Running as unit: rb-build-amd64_32-58175.service ==================================================================================== Tue Sep 16 14:51:00 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_32) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Tue Sep 16 14:51:00 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-qBncpkpq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 16 14:51:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Tue Sep 16 14:51:00 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-G89ZQY' Tue Sep 16 14:51:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Sep 16 14:51:00 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-NX1xjL' ok, let's check if andi is building anywhere yet… ok, andi is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of andi in forky on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Tue Sep 16 14:51:11 UTC 2025 I: starting to build andi/forky/amd64 on jenkins on '2025-09-16 14:51' Tue Sep 16 14:51:11 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/58175/console.log 1758034271 amd64 forky andi Tue Sep 16 14:51:11 UTC 2025 I: Downloading source for forky/andi=0.14-3 --2025-09-16 14:51:12-- http://deb.debian.org/debian/pool/main/a/andi/andi_0.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘andi_0.14-3.dsc’ 0K .. 100% 194M=0s 2025-09-16 14:51:12 (194 MB/s) - ‘andi_0.14-3.dsc’ saved [2134/2134] --2025-09-16 14:51:12-- http://deb.debian.org/debian/pool/main/a/andi/andi_0.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘andi_0.14-3.dsc’ 0K .. 100% 194M=0s 2025-09-16 14:51:12 (194 MB/s) - ‘andi_0.14-3.dsc’ saved [2134/2134] Tue Sep 16 14:51:12 UTC 2025 I: andi_0.14-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.14-3 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper Package-List: andi deb science optional arch=any Checksums-Sha1: e0db2f63dffadb9c39083d4ee3baf27d9185a51b 539526 andi_0.14.orig.tar.gz aafacef8abb5e91631a51df361919f0e4cf7ddb6 11748 andi_0.14-3.debian.tar.xz Checksums-Sha256: 2c9e11524f38e74fe3f981e6acd9527c1a1ca30994a30c5e86808ba5165a25b7 539526 andi_0.14.orig.tar.gz bd713784cd911c1baddefb0048f4ff21a3679b8513438f144fd9257b7e82cfad 11748 andi_0.14-3.debian.tar.xz Files: 8e42393fa97f726880480f4d3cc9542e 539526 andi_0.14.orig.tar.gz d01434621e2b4bd82dd7df06de734b05 11748 andi_0.14-3.debian.tar.xz Dgit: 33e7c37b34d8f2d9deba4a184c0bd6fa455abf1c debian archive/debian/0.14-3 https://git.dgit.debian.org/andi -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWP+hcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoUyw//e54q3sxmPXO44JhboGUEs4okgYET nAZye9VdYoG5b+YHuFFzGw1XBxtNJl9d+vk6kg5pxl9gd6Y9StPEwR4Ovv0ewpFg Rf//QaK24CjSeSXSLw+4qLAjrQ4xB1hKDXV+SjwTEmvqUHtwVlzuqZimRY9cmR7q dkdajH2vn1mGP+EnreWONkMcjAeDHbFu3N006H4aj1Gzu4f581t0IftCqH25MH2c /2ZRjQTE3JK21OW/m9j9HHahd0YImhH9dt+wjbe9U/DwCI2O5NSFnfrCtzYPnl2U hGKGBdfrdzFc/ElRA8NEs38nFRbYBoEe1GuTf91LeFfbdSOvfc0bmis/Y9MGh2oi wWrnoVIxbDpPdKSxEIkcob6WZPus7C+AzKka9XLzz/GVcHCc+3oEBzyV24o1WZgw ZYA7w1KECqhNHJ5Jp1eH6NotF7dcq7+/tdiUex4SZaOiY4eTqKTwVh9gU2Upi6/w K228wmCfGYb60VQOzxXqARxcm03oH4L60EaF25Yot7sEEeK2LX6MgB29RG6KSGiP VXL1G3wgBKhkXfWO6iE/1ORjK04Is/5/ugmnls99ei4j5CKtGripTQJ+CkeT+8Kv Ysae2+x4qs4+m+hh5Nx/3Q3QAIopp/SUHc9McsHXrbeKNe6Geyfp5oJRGs1qVT/L /OVWXNAyKWlp3C8= =02BR -----END PGP SIGNATURE----- Tue Sep 16 14:51:12 UTC 2025 I: Checking whether the package is not for us Tue Sep 16 14:51:12 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Sep 16 14:51:12 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Sep 16 14:51:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Tue Sep 16 14:51:12 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Y7w6fz' ==================================================================================== Mon Oct 19 21:14:12 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 andi forky /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI 0.14-3" as arguments. Mon Oct 19 21:14:12 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-lSormCrQ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Oct 19 21:14:12 UTC 2026 I: Downloading source for forky/andi=0.14-3 Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian forky/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian forky/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian forky/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (4545 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian forky/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian forky/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian forky/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (4545 kB/s) Download complete and in download only mode ============================================================================= Building andi in forky on amd64 on ionos5-amd64 now. Date: Mon Oct 19 21:14:13 UTC 2026 Date UTC: Mon Oct 19 21:14:13 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 19 09:14:13 -12 2026 I: pbuilder-time-stamp: 1792444453 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f3f6a0193a72463788e86cb49edcb1f2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='733154' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_Z1Wg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1 --logfile b1/build.log andi_0.14-3.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 29.1 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 native-architecture all 0.2.6 [2264 B] Get: 45 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libgirepository-2.0-0 amd64 2.84.4-3 [143 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 girepository-tools amd64 2.84.4-3 [150 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-3 [50.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libblkid-dev amd64 2.41.1-3 [230 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi-dev amd64 3.5.2-2 [63.7 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libmount-dev amd64 2.41.1-3 [30.8 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libsysprof-capture-4-dev amd64 49~rc-1 [53.3 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev amd64 2.84.4-3 [1688 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev-bin amd64 2.84.4-3 [166 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.84.4-3 [1286 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libglib2.0-bin amd64 2.84.4-3 [130 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev-bin amd64 2.84.4-3 [54.7 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev amd64 2.84.4-3 [55.5 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Fetched 29.1 MB in 9s (3271 kB/s) Preconfiguring packages ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cr libpfasta.a libpfasta_a-pfasta.o ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cr libcompat.a ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j42 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_amd64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_amd64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/733154 and its subdirectories I: Current time: Mon Oct 19 09:16:46 -12 2026 I: pbuilder-time-stamp: 1792444606 Mon Oct 19 21:16:46 UTC 2026 I: Signing ./b1/andi_0.14-3_amd64.buildinfo as andi_0.14-3_amd64.buildinfo.asc Mon Oct 19 21:16:46 UTC 2026 I: Signed ./b1/andi_0.14-3_amd64.buildinfo as ./b1/andi_0.14-3_amd64.buildinfo.asc Mon Oct 19 21:16:46 UTC 2026 - build #1 for andi/forky/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Mon Oct 19 21:16:46 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-lSormCrQ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI: total 16 -rw-rw-r-- 1 jenkins jenkins 2134 Dec 30 2023 andi_0.14-3.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 14:53 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 14:51 b2 -rw------- 1 jenkins jenkins 3202 Sep 16 14:51 rbuildlog.NaUzAsq /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1: total 632 -rw-r--r-- 1 jenkins jenkins 56580 Sep 16 14:53 andi-dbgsym_0.14-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 11748 Sep 16 14:53 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 16 14:53 andi_0.14-3.dsc -rw-r--r-- 1 jenkins jenkins 6197 Sep 16 14:53 andi_0.14-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7079 Sep 16 14:53 andi_0.14-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1503 Sep 16 14:53 andi_0.14-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 474264 Sep 16 14:53 andi_0.14-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1374 Sep 16 14:53 andi_0.14-3_source.changes -rw-r--r-- 1 jenkins jenkins 61418 Sep 16 14:53 build.log /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2: total 0 Tue Sep 16 14:53:47 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 19 09:14:13 -12 2026 I: pbuilder-time-stamp: 1792444453 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f3f6a0193a72463788e86cb49edcb1f2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='733154' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_Z1Wg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1 --logfile b1/build.log andi_0.14-3.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 29.1 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 native-architecture all 0.2.6 [2264 B] Get: 45 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libgirepository-2.0-0 amd64 2.84.4-3 [143 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 girepository-tools amd64 2.84.4-3 [150 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-3 [50.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libblkid-dev amd64 2.41.1-3 [230 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi-dev amd64 3.5.2-2 [63.7 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libmount-dev amd64 2.41.1-3 [30.8 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libsysprof-capture-4-dev amd64 49~rc-1 [53.3 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev amd64 2.84.4-3 [1688 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev-bin amd64 2.84.4-3 [166 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.84.4-3 [1286 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libglib2.0-bin amd64 2.84.4-3 [130 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev-bin amd64 2.84.4-3 [54.7 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev amd64 2.84.4-3 [55.5 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Fetched 29.1 MB in 9s (3271 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j42 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cr libpfasta.a libpfasta_a-pfasta.o ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cr libcompat.a ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j42 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_amd64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_amd64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/733154 and its subdirectories I: Current time: Mon Oct 19 09:16:46 -12 2026 I: pbuilder-time-stamp: 1792444606 Tue Sep 16 14:53:47 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Sep 16 14:53:47 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Sep 16 14:53:47 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Tue Sep 16 14:53:47 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ABydh9' ==================================================================================== Tue Sep 16 14:53:47 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 andi forky /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI 0.14-3" as arguments. Tue Sep 16 14:53:47 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-ycZCsaVz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Sep 16 14:53:47 UTC 2025 I: Downloading source for forky/andi=0.14-3 Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian forky/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian forky/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian forky/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (16.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian forky/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian forky/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian forky/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (16.8 MB/s) Download complete and in download only mode ============================================================================= Re-Building andi in forky on amd64 on ionos11-amd64 now. Date: Tue Sep 16 14:53:47 UTC 2025 Date UTC: Tue Sep 16 14:53:47 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_qLSX + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' andi = debian-installer -o andi = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' andi = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_qLSX --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2 --logfile b2/build.log andi_0.14-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 04:53:48 +14 2025 I: pbuilder-time-stamp: 1758034428 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 16 14:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=757594c508b8487ab4464b05f16e947a LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3013544 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_qLSX --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2 --logfile b2/build.log andi_0.14-3.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 74 newly installed, 0 to remove and 0 not upgraded. Need to get 29.1 MB of archives. After unpacking 120 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 native-architecture all 0.2.6 [2264 B] Get: 45 http://deb.debian.org/debian forky/main amd64 libglib2.0-0t64 amd64 2.84.4-3 [1518 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libgirepository-2.0-0 amd64 2.84.4-3 [143 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 girepository-tools amd64 2.84.4-3 [150 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 uuid-dev amd64 2.41.1-3 [50.4 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libblkid-dev amd64 2.41.1-3 [230 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libffi-dev amd64 3.5.2-2 [63.7 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libpcre2-16-0 amd64 10.46-1 [281 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 libpcre2-32-0 amd64 10.46-1 [268 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 libpcre2-posix3 amd64 10.46-1 [63.9 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 libpcre2-dev amd64 10.46-1 [853 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 libmount-dev amd64 2.41.1-3 [30.8 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 libsysprof-capture-4-dev amd64 49~rc-1 [53.3 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev amd64 2.84.4-3 [1688 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libgio-2.0-dev-bin amd64 2.84.4-3 [166 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libglib2.0-data all 2.84.4-3 [1286 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libglib2.0-bin amd64 2.84.4-3 [130 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev-bin amd64 2.84.4-3 [54.7 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 libglib2.0-dev amd64 2.84.4-3 [55.5 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Fetched 29.1 MB in 7s (4106 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. 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Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibility. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j40 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cr libpfasta.a libpfasta_a-pfasta.o ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cr libcompat.a ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j40 check "TESTSUITEFLAGS=-j40 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j40 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_amd64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_amd64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3013544 and its subdirectories I: Current time: Wed Sep 17 04:56:54 +14 2025 I: pbuilder-time-stamp: 1758034614 + false + set +x Tue Sep 16 14:56:54 UTC 2025 I: Signing ./b2/andi_0.14-3_amd64.buildinfo as andi_0.14-3_amd64.buildinfo.asc Tue Sep 16 14:56:54 UTC 2025 I: Signed ./b2/andi_0.14-3_amd64.buildinfo as ./b2/andi_0.14-3_amd64.buildinfo.asc Tue Sep 16 14:56:54 UTC 2025 - build #2 for andi/forky/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Tue Sep 16 14:56:54 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ycZCsaVz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI: total 80 -rw-rw-r-- 1 jenkins jenkins 2134 Dec 30 2023 andi_0.14-3.dsc drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 14:53 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 16 14:56 b2 -rw------- 1 jenkins jenkins 64908 Sep 16 14:53 rbuildlog.NaUzAsq /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1: total 632 -rw-r--r-- 1 jenkins jenkins 56580 Sep 16 14:53 andi-dbgsym_0.14-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 11748 Sep 16 14:53 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 16 14:53 andi_0.14-3.dsc -rw-r--r-- 1 jenkins jenkins 6197 Sep 16 14:53 andi_0.14-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7079 Sep 16 14:53 andi_0.14-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1503 Sep 16 14:53 andi_0.14-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 474264 Sep 16 14:53 andi_0.14-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 1374 Sep 16 14:53 andi_0.14-3_source.changes -rw-r--r-- 1 jenkins jenkins 61418 Sep 16 14:53 build.log /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2: total 624 -rw-r--r-- 1 jenkins jenkins 56580 Sep 16 14:56 andi-dbgsym_0.14-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 11748 Sep 16 14:56 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Sep 16 14:56 andi_0.14-3.dsc -rw-rw-r-- 1 jenkins jenkins 6197 Sep 16 14:56 andi_0.14-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7079 Sep 16 14:56 andi_0.14-3_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1503 Sep 16 14:56 andi_0.14-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 474264 Sep 16 14:56 andi_0.14-3_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1374 Sep 16 14:56 andi_0.14-3_source.changes -rw-rw-r-- 1 jenkins jenkins 63346 Sep 16 14:56 build.log Tue Sep 16 14:56:54 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Sep 16 14:56:55 UTC 2025 I: andi_0.14-3_amd64.changes: Format: 1.8 Date: Sat, 30 Dec 2023 12:02:01 +0100 Source: andi Binary: andi andi-dbgsym Architecture: amd64 Version: 0.14-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: andi - Efficient Estimation of Evolutionary Distances Closes: 1043772 Changes: andi (0.14-3) unstable; urgency=medium . * Team upload. * d/clean: new: cleanup leftover ChangeLog file. (Closes: #1043772) * remove-signedcompare-warning.patch: dep3 header. Also the patch has been forwarded upstream. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 413a42399a06fd2fa9739ce6bc2e1084bb1532ec 56580 andi-dbgsym_0.14-3_amd64.deb 28545b9a510c0bdea39f16584f46f114123fe91e 6197 andi_0.14-3_amd64.buildinfo 27a8e34665b4533f3d5b6ad0972618dd153bd533 474264 andi_0.14-3_amd64.deb Checksums-Sha256: f56e265e299f2d161a9e19569f67021116914cb2da9d9a3071f82c39b5f6af93 56580 andi-dbgsym_0.14-3_amd64.deb b4ab2af82fbca3c9bc2fbce51fe97ee06d574285e086e71b16a49fa1a0beb986 6197 andi_0.14-3_amd64.buildinfo 473c0049a2204fa8a19905673df3b666dbd1efb5b54d2d344796f028b1541752 474264 andi_0.14-3_amd64.deb Files: b0c466ae60f3e460f7cda52b63d54d00 56580 debug optional andi-dbgsym_0.14-3_amd64.deb 485107f7e8b3da998f250821f7bba331 6197 science optional andi_0.14-3_amd64.buildinfo 8588a8ea75c3db7e298b87d36b3bb25e 474264 science optional andi_0.14-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/andi_0.14-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/andi_0.14-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/andi_0.14-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/andi_0.14-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/andi_0.14-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/andi_0.14-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-16 14:53:46.992224068 +0000 +++ b2/build.log 2025-09-16 14:56:54.824454391 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Oct 19 09:14:13 -12 2026 -I: pbuilder-time-stamp: 1792444453 +I: Current time: Wed Sep 17 04:53:48 +14 2025 +I: pbuilder-time-stamp: 1758034428 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,53 +24,85 @@ dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 16 14:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f3f6a0193a72463788e86cb49edcb1f2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='733154' - PS1='# ' - PS2='> ' + INVOCATION_ID=757594c508b8487ab4464b05f16e947a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3013544 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_Z1Wg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1 --logfile b1/build.log andi_0.14-3.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/pbuilderrc_qLSX --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2 --logfile b2/build.log andi_0.14-3.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/733154/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -190,7 +222,7 @@ Get: 72 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] -Fetched 29.1 MB in 9s (3271 kB/s) +Fetched 29.1 MB in 7s (4106 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -443,8 +475,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Oct 19 21:16:09 UTC 2026. -Universal Time is now: Mon Oct 19 21:16:09 UTC 2026. +Local time is now: Tue Sep 16 14:56:10 UTC 2025. +Universal Time is now: Tue Sep 16 14:56:10 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:amd64 (49~rc-1) ... @@ -514,7 +546,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable @@ -656,7 +692,7 @@ config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build - make -j42 + make -j40 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' @@ -751,7 +787,7 @@ make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test - make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1 + make -j40 check "TESTSUITEFLAGS=-j40 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' @@ -809,7 +845,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ - make -j42 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no + make -j40 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' @@ -883,12 +919,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3013544/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/733154 and its subdirectories -I: Current time: Mon Oct 19 09:16:46 -12 2026 -I: pbuilder-time-stamp: 1792444606 +I: removing directory /srv/workspace/pbuilder/3013544 and its subdirectories +I: Current time: Wed Sep 17 04:56:54 +14 2025 +I: pbuilder-time-stamp: 1758034614 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/andi_0.14-3.diff: 67.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/andi_0.14-3.diff.gz b2/build.log: 82.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.3% -- replaced with stdout Tue Sep 16 14:56:55 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_andi_forky_amd64_1758034615 + touch /var/log/reproducible-builds/diffoscope_stamp_andi_forky_amd64_1758034615 + RESULT=0 + systemd-run '--description=diffoscope on andi/0.14-3 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_32-58175 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI --run-session -c jenkins-reproducible-forky-diffoscope-f2c8df09-4e90-489a-8bb4-dedc8e7d0d2e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/dbd-tmp-85nzDbn ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1/andi_0.14-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2/andi_0.14-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_32-58175.service; invocation ID: e30f540c3cec4836a787a3efa2a2b4ea # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/andi_0.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b1/andi_0.14-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YzV2rQqI/b2/andi_0.14-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 211ms CPU time consumed: 177ms Memory peak: 18.8M (swap: 0B) _ _ __ _ _ __ __| (_) / _` | '_ \ / _` | | | (_| | | | | (_| | | \__,_|_| |_|\__,_|_| Tue Sep 16 14:58:54 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 16 14:58:54 UTC 2025 I: andi from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-16 14:58:54] INFO: Starting at 2025-09-16 14:58:54.685017 [2025-09-16 14:58:54] INFO: Generating the pages of 1 package(s) [2025-09-16 14:58:55] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/andi didn't produce a buildlog, even though it has been built. [2025-09-16 14:58:55] INFO: Finished at 2025-09-16 14:58:55.236276, took: 0:00:00.551266 Tue Sep 16 14:58:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/andi.html Tue Sep 16 14:58:55 UTC 2025 I: Removing signed andi_0.14-3_amd64.buildinfo.asc files: removed './b1/andi_0.14-3_amd64.buildinfo.asc' removed './b2/andi_0.14-3_amd64.buildinfo.asc' 1758034735 amd64 forky andi Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/andi_0.14-3.rbuild.log: 80.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/andi_0.14-3.rbuild.log.gz [2025-09-16 14:58:55] INFO: Starting at 2025-09-16 14:58:55.819109 [2025-09-16 14:58:56] INFO: Generating the pages of 1 package(s) [2025-09-16 14:58:56] INFO: Finished at 2025-09-16 14:58:56.248928, took: 0:00:00.429824 All cleanup done. Tue Sep 16 14:58:56 UTC 2025 - total duration: 0h 7m 54s. Tue Sep 16 14:58:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qBncpkpq, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 7min 56.335s CPU time consumed: 3.975s Memory peak: 39.8M (swap: 0B)