Running as unit: rb-build-amd64_32-62496.service; invocation ID: 8157dd8fa6064e2e81d0d868dd4771be ==================================================================================== Thu Oct 30 23:48:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_32) on jenkins, called using "ionos5-amd64 ionos11-amd64" as arguments. Thu Oct 30 23:48:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-a1ojORrj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 23:48:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Oct 30 23:48:21 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-og61gI' Thu Oct 30 23:48:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Oct 30 23:48:21 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-BXuBz3' ok, let's check if metaphlan is building anywhere yet… ok, metaphlan is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metaphlan in unstable on amd64 on jenkins now. 1st build will be done on ionos5-amd64.debian.net. 2nd build will be done on ionos11-amd64.debian.net. ============================================================================= Thu Oct 30 23:48:39 UTC 2025 I: starting to build metaphlan/unstable/amd64 on jenkins on '2025-10-30 23:48' Thu Oct 30 23:48:39 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_32/62496/console.log 1761868119 amd64 unstable metaphlan Thu Oct 30 23:48:39 UTC 2025 I: Downloading source for unstable/metaphlan=4.0.4+ds-1 --2025-10-30 23:48:39-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2553 (2.5K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4+ds-1.dsc’ 0K .. 100% 315M=0s 2025-10-30 23:48:39 (315 MB/s) - ‘metaphlan_4.0.4+ds-1.dsc’ saved [2553/2553] --2025-10-30 23:48:39-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4%2bds-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2553 (2.5K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4+ds-1.dsc’ 0K .. 100% 315M=0s 2025-10-30 23:48:39 (315 MB/s) - ‘metaphlan_4.0.4+ds-1.dsc’ saved [2553/2553] Thu Oct 30 23:48:39 UTC 2025 I: metaphlan_4.0.4+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biobakery/MetaPhlAn Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Testsuite: autopkgtest Testsuite-Triggers: bowtie Build-Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython Package-List: metaphlan deb science optional arch=all Checksums-Sha1: 80115b4a61f31d4f0516d091630cb8a4fe5e599d 7185747 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz d14430b31ef0ad445f01547fa9586b391f5cf178 1891119 metaphlan_4.0.4+ds.orig.tar.gz 3d3fe95ca36427c8a3de235012119e7cae22f4ce 459488 metaphlan_4.0.4+ds-1.debian.tar.xz Checksums-Sha256: db1bafe483318ca1ce8399a76491a906c3d52ba9d9eaee6f47ff09ba3637f753 7185747 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz f68917d97397bcc6a3daa17772e560e65a852e734162a55842bd0636c6f1185a 1891119 metaphlan_4.0.4+ds.orig.tar.gz a8347f911f4c725808d8c6d0314446f62d1d813e419ad90606e1daba34c38ad5 459488 metaphlan_4.0.4+ds-1.debian.tar.xz Files: 31de0733e33528623679a01f8f180a3a 7185747 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz e5da0f667669237875c2504ddf1edf88 1891119 metaphlan_4.0.4+ds.orig.tar.gz 187e77b218f602d844eba0fd11182c89 459488 metaphlan_4.0.4+ds-1.debian.tar.xz Dgit: 397b310edcda384623bbd1b3106d9bef2aac5cc6 debian archive/debian/4.0.4+ds-1 https://git.dgit.debian.org/metaphlan -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmg2KEIUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoUJRAAll76tWZwpgOLhKvNJiWJcI9r5SsX K+N5pxEsmSsWwrsGiD9HqvoL6wZ6fwSEeHm6IS+ZWjrpVkeETztk652oCnR3GYwh MKALncC6ZONni2dLKSBDgHgMaJ/t8A1dFfh3h9Ll5JMdcEMsnf6xrOwe2LPlp3Hs sNzZsZjkFevP7gFt7OWFm2Pxnt9T980SSjzducTKH6gEIwQWkST0JiYp59uwukEk esxT42MDD062ix7RUj7EpNkZSoe+HY0pZ7k8ebkTklLqD+eCF1dOsM97GaMoh31d vDpzNQZxll0TBgjpbbIL9S4CwFicyxjv5KbCdXghnkY78EGnGNdPhPcrTGcjppuy 6J+WJuZ/d85liXSBcT23Ai1izmo7Lxym86bXTYMgDyqj0MvEFaHDf/9bA0d65V+E neJFKqu7axVjYrkJk+Ryz26dpqAjyauU/9+hwM9nbEEkDS6LEaJPyoAE/q24VCCL ndSp1a3hciyX6hkrO1Lu94RB7Vtf4ojV+1UBDBFo1Kl2MfpIvxluO/TznLbcxjsx wkKWsjVe7teQMxnOlemCOC4KZtaVnPFwTe1B/qgrlnyvE4Vob+hY5CuvH9WWulSU cIOHBq7ITHselc31L0P5KgXdyxbuCOVQY2Ml8NEMBUGfMb/GQcLnHknOITzEe3yX M2NcjjM6tmJwnXE= =VcpM -----END PGP SIGNATURE----- Thu Oct 30 23:48:39 UTC 2025 I: Checking whether the package is not for us Thu Oct 30 23:48:39 UTC 2025 I: Starting 1st build on remote node ionos5-amd64.debian.net. Thu Oct 30 23:48:39 UTC 2025 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Thu Oct 30 23:48:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos5-amd64.debian.net is marked as down. Thu Oct 30 23:48:40 UTC 2025 - checking via ssh if ionos5-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LgoHHk' ==================================================================================== Thu Dec 3 06:11:40 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos5-amd64, called using "1 metaphlan unstable /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw 4.0.4+ds-1" as arguments. Thu Dec 3 06:11:40 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-oqTmZvPt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 3 06:11:40 UTC 2026 I: Downloading source for unstable/metaphlan=4.0.4+ds-1 Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9539 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (dsc) [2553 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [7186 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [1891 kB] Get:4 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (diff) [459 kB] Fetched 9539 kB in 0s (134 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9539 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (dsc) [2553 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [7186 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [1891 kB] Get:4 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (diff) [459 kB] Fetched 9539 kB in 0s (134 MB/s) Download complete and in download only mode ============================================================================= Building metaphlan in unstable on amd64 on ionos5-amd64 now. Date: Thu Dec 3 06:11:40 UTC 2026 Date UTC: Thu Dec 3 06:11:40 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 2 18:11:40 -12 2026 I: pbuilder-time-stamp: 1796278300 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4+ds-1.dsc] I: copying [./metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz] I: copying [./metaphlan_4.0.4+ds.orig.tar.gz] I: copying [./metaphlan_4.0.4+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4+ds dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaging-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='01a5340a7b664818ace9e74bd9cec743' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2729067' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_UrtE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1 --logfile b1/build.log metaphlan_4.0.4+ds-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxrender1{a} libyaml-0-2{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-charset-normalizer{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 89.5 MB of archives. After unpacking 413 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.4+ds-2 [5092 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 61 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-5 [976 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.8-1 [146 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-4 [26.4 MB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 12.0.0-1 [534 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.4-2 [1170 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.86+dfsg-1 [1612 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 89.5 MB in 14s (6495 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:amd64 (3.13.9-1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20196 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21211 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. 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Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 3 06:13:35 UTC 2026. Universal Time is now: Thu Dec 3 06:13:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.3.4+ds-2) ... Setting up autopoint (0.23.1-2) ... 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Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1+b1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up pandoc (3.1.11.1+ds-4) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metaphlan-4.0.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4+ds-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/consensus_markers.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/util_fun.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/external_exec.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/database_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/parallelisation.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-313.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan2krona.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strain_transmission.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/extract_markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sgb_to_gtdb_profile.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/add_metadata_tree.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/read_fastx.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strainphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/run_treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sample2markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/merge_metaphlan_tables.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/plot_tree_graphlan.py I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; find debian/metaphlan -name "calculate_diversity.R" \ -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2729067 and its subdirectories I: Current time: Wed Dec 2 18:15:05 -12 2026 I: pbuilder-time-stamp: 1796278505 Thu Dec 3 06:15:05 UTC 2026 I: Signing ./b1/metaphlan_4.0.4+ds-1_amd64.buildinfo as metaphlan_4.0.4+ds-1_amd64.buildinfo.asc Thu Dec 3 06:15:05 UTC 2026 I: Signed ./b1/metaphlan_4.0.4+ds-1_amd64.buildinfo as ./b1/metaphlan_4.0.4+ds-1_amd64.buildinfo.asc Thu Dec 3 06:15:05 UTC 2026 - build #1 for metaphlan/unstable/amd64 on ionos5-amd64 done. Starting cleanup. All cleanup done. Thu Dec 3 06:15:05 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-oqTmZvPt, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 23:52 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 23:48 b2 -rw-rw-r-- 1 jenkins jenkins 2553 May 27 21:11 metaphlan_4.0.4+ds-1.dsc -rw------- 1 jenkins jenkins 3684 Oct 30 23:48 rbuildlog.xcQ57zh /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1: total 11424 -rw-r--r-- 1 jenkins jenkins 108289 Oct 30 23:52 build.log -rw-r--r-- 1 jenkins jenkins 459488 Oct 30 23:52 metaphlan_4.0.4+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2553 Oct 30 23:52 metaphlan_4.0.4+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 2009428 Oct 30 23:52 metaphlan_4.0.4+ds-1_all.deb -rw-r--r-- 1 jenkins jenkins 7351 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8233 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1614 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 2408 Oct 30 23:52 metaphlan_4.0.4+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 7185747 Oct 30 23:52 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz -rw-r--r-- 1 jenkins jenkins 1891119 Oct 30 23:52 metaphlan_4.0.4+ds.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2: total 0 Thu Oct 30 23:52:06 UTC 2025 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 2 18:11:40 -12 2026 I: pbuilder-time-stamp: 1796278300 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4+ds-1.dsc] I: copying [./metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz] I: copying [./metaphlan_4.0.4+ds.orig.tar.gz] I: copying [./metaphlan_4.0.4+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4+ds dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaging-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='01a5340a7b664818ace9e74bd9cec743' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2729067' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_UrtE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1 --logfile b1/build.log metaphlan_4.0.4+ds-1.dsc' SUDO_GID='110' SUDO_HOME='/var/lib/jenkins' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxrender1{a} libyaml-0-2{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-charset-normalizer{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 89.5 MB of archives. After unpacking 413 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.4+ds-2 [5092 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 61 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-5 [976 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.8-1 [146 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-4 [26.4 MB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 12.0.0-1 [534 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.4-2 [1170 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.86+dfsg-1 [1612 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 89.5 MB in 14s (6495 kB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Unpacking libaom3:amd64 (3.13.1-2) ... Selecting previously unselected package libdav1d7:amd64. Preparing to unpack .../050-libdav1d7_1.5.1-1_amd64.deb ... Unpacking libdav1d7:amd64 (1.5.1-1) ... Selecting previously unselected package libgav1-1:amd64. Preparing to unpack .../051-libgav1-1_0.19.0-3+b1_amd64.deb ... Unpacking libgav1-1:amd64 (0.19.0-3+b1) ... Selecting previously unselected package librav1e0.8:amd64. Preparing to unpack .../052-librav1e0.8_0.8.1-5_amd64.deb ... Unpacking librav1e0.8:amd64 (0.8.1-5) ... Selecting previously unselected package libsvtav1enc2:amd64. Preparing to unpack .../053-libsvtav1enc2_2.3.0+dfsg-1_amd64.deb ... Unpacking libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../054-libjpeg62-turbo_1%3a2.1.5-4_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:2.1.5-4) ... Selecting previously unselected package libyuv0:amd64. 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metaphlan-4.0.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4+ds-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/consensus_markers.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/util_fun.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/external_exec.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/database_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/parallelisation.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-313.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan2krona.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strain_transmission.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/extract_markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sgb_to_gtdb_profile.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/add_metadata_tree.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/read_fastx.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strainphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/run_treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sample2markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/merge_metaphlan_tables.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/plot_tree_graphlan.py I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; find debian/metaphlan -name "calculate_diversity.R" \ -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2729067 and its subdirectories I: Current time: Wed Dec 2 18:15:05 -12 2026 I: pbuilder-time-stamp: 1796278505 Thu Oct 30 23:52:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Thu Oct 30 23:52:07 UTC 2025 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Thu Oct 30 23:52:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if ionos11-amd64.debian.net is marked as down. Thu Oct 30 23:52:07 UTC 2025 - checking via ssh if ionos11-amd64.debian.net is up. removed '/tmp/read-only-fs-test-QSfYG7' ==================================================================================== Thu Oct 30 23:52:08 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on ionos11-amd64, called using "2 metaphlan unstable /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw 4.0.4+ds-1" as arguments. Thu Oct 30 23:52:08 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-IWH2Bdfg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 30 23:52:08 UTC 2025 I: Downloading source for unstable/metaphlan=4.0.4+ds-1 Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9539 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (dsc) [2553 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [7186 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [1891 kB] Get:4 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (diff) [459 kB] Fetched 9539 kB in 0s (118 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 9539 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (dsc) [2553 B] Get:2 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [7186 kB] Get:3 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (tar) [1891 kB] Get:4 http://deb.debian.org/debian unstable/main metaphlan 4.0.4+ds-1 (diff) [459 kB] Fetched 9539 kB in 0s (118 MB/s) Download complete and in download only mode ============================================================================= Re-Building metaphlan in unstable on amd64 on ionos11-amd64 now. Date: Thu Oct 30 23:52:08 UTC 2025 Date UTC: Thu Oct 30 23:52:08 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_mS7N + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' metaphlan = debian-installer -o metaphlan = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' metaphlan = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_mS7N --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2 --logfile b2/build.log metaphlan_4.0.4+ds-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 13:52:08 +14 2025 I: pbuilder-time-stamp: 1761868328 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4+ds-1.dsc] I: copying [./metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz] I: copying [./metaphlan_4.0.4+ds.orig.tar.gz] I: copying [./metaphlan_4.0.4+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4+ds dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-packaging-version.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 30 23:52 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f6acd51a0094473fb26e182c99bb99ae LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3696252 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_mS7N --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2 --logfile b2/build.log metaphlan_4.0.4+ds-1.dsc' SUDO_GID=111 SUDO_HOME=/var/lib/jenkins SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libraqm0{a} librav1e0.8{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtiff6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxrender1{a} libyaml-0-2{a} libyuv0{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-charset-normalizer{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-numpy-dev{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 89.5 MB of archives. After unpacking 413 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.3.4+ds-2 [138 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-7 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.3.4+ds-2 [5092 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 bowtie2 amd64 2.5.4-1+b2 [1505 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 42 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-0.3 [640 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 61 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libabsl20240722 amd64 20240722.0-4 [492 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.13.1-2 [1906 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.1-1 [559 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-3+b1 [353 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librav1e0.8 amd64 0.8.1-5 [976 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2489 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1919.20250919-1 [175 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.3.0-1+b1 [137 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.46.4-1 [259 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-3 [26.6 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.1-1 [1546 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-11 [76.7 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 12.1.0-1 [530 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 4.4.0-3 [251 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.8-1 [146 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2.1 [204 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.3-1 [14.0 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.1-1 [361 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-4 [26.4 MB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 12.0.0-1 [534 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-4 [10.1 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.4.4-2 [1170 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.86+dfsg-1 [1612 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 89.5 MB in 6s (14.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_amd64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Selecting previously unselected package gettext. Preparing to unpack .../032-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../033-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../034-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../035-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package dh-python. Preparing to unpack .../036-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../037-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../038-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:amd64. Preparing to unpack .../039-libfontenc1_1%3a1.1.8-1+b2_amd64.deb ... Unpacking libfontenc1:amd64 (1:1.1.8-1+b2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../040-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../041-libpng16-16t64_1.6.50-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../042-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../043-x11-common_1%3a7.7+26_all.deb ... Unpacking x11-common (1:7.7+26) ... 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Current default time zone: 'Etc/UTC' Local time is now: Thu Oct 30 23:55:25 UTC 2025. Universal Time is now: Thu Oct 30 23:55:25 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... Setting up autotools-dev (20240727.1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:amd64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.16-3) ... Setting up libimagequant0:amd64 (4.4.0-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up python3-numpy-dev:amd64 (1:2.3.4+ds-2) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:amd64 (0.19.0-3+b1) ... Setting up libgfortran5:amd64 (15.2.0-7) ... Setting up autoconf (2.72-3.1) ... Setting up libwebp7:amd64 (1.5.0-0.1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up dwz (0.16-2) ... Setting up libdav1d7:amd64 (1.5.1-1) ... Setting up sensible-utils (0.0.26) ... Setting up libtiff6:amd64 (4.7.1-1) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up liblua5.4-0:amd64 (5.4.8-1) ... Setting up libopenjp2-7:amd64 (2.5.3-2.1) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up pandoc-data (3.1.11.1-3) ... Setting up libwebpmux3:amd64 (1.5.0-0.1) ... Setting up libyuv0:amd64 (0.0.1919.20250919-1) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libavif16:amd64 (1.3.0-1+b1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libtool (2.5.4-7) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libglib2.0-0t64:amd64 (2.86.1-1) ... No schema files found: doing nothing. Setting up pandoc (3.1.11.1+ds-4) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (12.1.0-1) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up bowtie2 (2.5.4-1+b2) ... Setting up libraqm0:amd64 (0.10.3-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.3.4+ds-2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-cairo (1.27.0-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up python3-pil:amd64 (12.0.0-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-rlpycairo (0.3.0-4) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.4-2) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.86+dfsg-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/metaphlan-4.0.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaphlan_4.0.4+ds-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/metaphlan-4.0.4+ds/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build; python3.13 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/external_exec.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/util_fun.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/database_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/parallelisation.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/consensus_markers.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__init__.py to __init__.cpython-313.pyc /usr/lib/python3.13/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-313.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strain_transmission.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strainphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/run_treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/read_fastx.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sample2markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sgb_to_gtdb_profile.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/extract_markers.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/merge_metaphlan_tables.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan2krona.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/plot_tree_graphlan.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/treeshrink.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/add_metadata_tree.py I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; find debian/metaphlan -name "calculate_diversity.R" \ -exec chmod +x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4+ds-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3696252 and its subdirectories I: Current time: Fri Oct 31 13:56:43 +14 2025 I: pbuilder-time-stamp: 1761868603 + false + set +x Thu Oct 30 23:56:43 UTC 2025 I: Signing ./b2/metaphlan_4.0.4+ds-1_amd64.buildinfo as metaphlan_4.0.4+ds-1_amd64.buildinfo.asc Thu Oct 30 23:56:43 UTC 2025 I: Signed ./b2/metaphlan_4.0.4+ds-1_amd64.buildinfo as ./b2/metaphlan_4.0.4+ds-1_amd64.buildinfo.asc Thu Oct 30 23:56:43 UTC 2025 - build #2 for metaphlan/unstable/amd64 on ionos11-amd64 done. Starting cleanup. All cleanup done. Thu Oct 30 23:56:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-IWH2Bdfg, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw: total 128 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 23:52 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 30 23:56 b2 -rw-rw-r-- 1 jenkins jenkins 2553 May 27 21:11 metaphlan_4.0.4+ds-1.dsc -rw------- 1 jenkins jenkins 112261 Oct 30 23:52 rbuildlog.xcQ57zh /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1: total 11452 -rw-r--r-- 1 jenkins jenkins 108289 Oct 30 23:52 build.log -rw-r--r-- 1 jenkins jenkins 459488 Oct 30 23:52 metaphlan_4.0.4+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2553 Oct 30 23:52 metaphlan_4.0.4+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 2009428 Oct 30 23:52 metaphlan_4.0.4+ds-1_all.deb -rw-r--r-- 1 jenkins jenkins 7351 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8233 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1614 Oct 30 23:52 metaphlan_4.0.4+ds-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 2408 Oct 30 23:52 metaphlan_4.0.4+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 7185747 Oct 30 23:52 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz -rw-r--r-- 1 jenkins jenkins 1891119 Oct 30 23:52 metaphlan_4.0.4+ds.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2: total 11424 -rw-rw-r-- 1 jenkins jenkins 110215 Oct 30 23:56 build.log -rw-r--r-- 1 jenkins jenkins 459488 Oct 30 23:56 metaphlan_4.0.4+ds-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2553 Oct 30 23:56 metaphlan_4.0.4+ds-1.dsc -rw-r--r-- 1 jenkins jenkins 2009428 Oct 30 23:56 metaphlan_4.0.4+ds-1_all.deb -rw-rw-r-- 1 jenkins jenkins 7351 Oct 30 23:56 metaphlan_4.0.4+ds-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8233 Oct 30 23:56 metaphlan_4.0.4+ds-1_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1614 Oct 30 23:56 metaphlan_4.0.4+ds-1_amd64.changes -rw-rw-r-- 1 jenkins jenkins 2408 Oct 30 23:56 metaphlan_4.0.4+ds-1_source.changes -rw-r--r-- 1 jenkins jenkins 7185747 Oct 30 23:56 metaphlan_4.0.4+ds.orig-debian-tests-data.tar.gz -rw-r--r-- 1 jenkins jenkins 1891119 Oct 30 23:56 metaphlan_4.0.4+ds.orig.tar.gz Thu Oct 30 23:56:44 UTC 2025 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Thu Oct 30 23:56:45 UTC 2025 I: metaphlan_4.0.4+ds-1_amd64.changes: Format: 1.8 Date: Thu, 22 May 2025 22:30:27 +0200 Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Étienne Mollier <emollier@debian.org> Description: metaphlan - Metagenomic Phylogenetic Analysis Closes: 1035175 Changes: metaphlan (4.0.4+ds-1) unstable; urgency=medium . * Team upload. . [ Harish chavre ] * patch added Replace distutils.version with packaging.version for Python 3.12+ compatibility * Add autopkgtest for metaphlan Closes: #1035175 * Add copyright info for autopkgtest data in debian/copyright * created gbp.conf to embed the test data * move large test data to separate debian-tests-data component . [ Étienne Mollier ] * d/rules: fix calculate_diversity.R script not executable. * d/control: metaphlan depends on r-base-core. * d/control: declare compliance to standards version 4.7.2. Checksums-Sha1: 1fb4c4e16768f77607df734f8a1e41d9526a68b0 2009428 metaphlan_4.0.4+ds-1_all.deb f1ed9408183e4f2beff758401dd38f88c691a732 7351 metaphlan_4.0.4+ds-1_amd64.buildinfo Checksums-Sha256: baa6094b3c2b467a4049dc762312ed834fb63f40c42ab5748d332668bacbac9b 2009428 metaphlan_4.0.4+ds-1_all.deb 872248205ed6700d22a7dc77867dd1d1e2dfc0211b64a11101730dd7a2bd098e 7351 metaphlan_4.0.4+ds-1_amd64.buildinfo Files: 1c817cb3b7c31d344a896b0d90e94157 2009428 science optional metaphlan_4.0.4+ds-1_all.deb 2cedbc01f10007912deb664769f045b1 7351 science optional metaphlan_4.0.4+ds-1_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metaphlan_4.0.4+ds-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metaphlan_4.0.4+ds-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/metaphlan_4.0.4+ds-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/metaphlan_4.0.4+ds-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/metaphlan_4.0.4+ds-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metaphlan_4.0.4+ds-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-30 23:52:06.774737221 +0000 +++ b2/build.log 2025-10-30 23:56:44.355066744 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 2 18:11:40 -12 2026 -I: pbuilder-time-stamp: 1796278300 +I: Current time: Fri Oct 31 13:52:08 +14 2025 +I: pbuilder-time-stamp: 1761868328 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying use-packaging-version.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 30 23:52 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='01a5340a7b664818ace9e74bd9cec743' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2729067' - PS1='# ' - PS2='> ' + INVOCATION_ID=f6acd51a0094473fb26e182c99bb99ae + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3696252 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_UrtE --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1 --logfile b1/build.log metaphlan_4.0.4+ds-1.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/pbuilderrc_mS7N --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2 --logfile b2/build.log metaphlan_4.0.4+ds-1.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2729067/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -244,7 +276,7 @@ Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 89.5 MB in 14s (6495 kB/s) +Fetched 89.5 MB in 6s (14.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -664,8 +696,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Dec 3 06:13:35 UTC 2026. -Universal Time is now: Thu Dec 3 06:13:35 UTC 2026. +Local time is now: Thu Oct 30 23:55:25 UTC 2025. +Universal Time is now: Thu Oct 30 23:55:25 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -773,7 +805,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metaphlan-4.0.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4+ds-1_source.changes +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metaphlan-4.0.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaphlan_4.0.4+ds-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -808,107 +844,107 @@ running build running build_py creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan -copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan +copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases -copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils -copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils +copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink -copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink +copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS -copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS -copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS +copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS +copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo -creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R +creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data +copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html -creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data -copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data -creating /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. @@ -948,152 +984,152 @@ running install_lib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/external_exec.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/util_fun.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/database_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/parallelisation.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/consensus_markers.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/consensus_markers.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/util_fun.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/external_exec.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/database_controller.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/__pycache__/parallelisation.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan -creating /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4+ds/.pybuild/cpython3_3.13/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__init__.py to __init__.cpython-313.pyc +/usr/lib/python3.13/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-313.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-313.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/__init__.py to __init__.cpython-313.pyc -/usr/lib/python3.13/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' -byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-313.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4+ds/debian/metaphlan/usr/lib/python3.13/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-313.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info @@ -1128,19 +1164,19 @@ make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4+ds' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan2krona.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strain_transmission.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/extract_markers.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sgb_to_gtdb_profile.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/treeshrink.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/add_metadata_tree.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/read_fastx.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/strainphlan I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/run_treeshrink.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/read_fastx.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sample2markers.py -I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/merge_metaphlan_tables.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/sgb_to_gtdb_profile.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/extract_markers.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/merge_metaphlan_tables.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/metaphlan2krona.py I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/plot_tree_graphlan.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/treeshrink.py +I: dh_python3 tools:114: replacing shebang in debian/metaphlan/usr/bin/add_metadata_tree.py I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. @@ -1170,12 +1206,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3696252/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2729067 and its subdirectories -I: Current time: Wed Dec 2 18:15:05 -12 2026 -I: pbuilder-time-stamp: 1796278505 +I: removing directory /srv/workspace/pbuilder/3696252 and its subdirectories +I: Current time: Fri Oct 31 13:56:43 +14 2025 +I: pbuilder-time-stamp: 1761868603 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metaphlan_4.0.4+ds-1.diff: 92.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/metaphlan_4.0.4+ds-1.diff.gz b2/build.log: 87.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.5% -- replaced with stdout Thu Oct 30 23:56:46 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_metaphlan_unstable_amd64_1761868606 + touch /var/log/reproducible-builds/diffoscope_stamp_metaphlan_unstable_amd64_1761868606 + RESULT=0 + systemd-run '--description=diffoscope on metaphlan/4.0.4+ds-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_32-62496 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw --run-session -c jenkins-reproducible-unstable-diffoscope-a71302f9-ee0c-49ce-b7af-012813431ca5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/dbd-tmp-532Cs10 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1/metaphlan_4.0.4+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2/metaphlan_4.0.4+ds-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_32-62496.service; invocation ID: dcf7c5dde1774fe9a47d3dc744b231a2 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/metaphlan_4.0.4+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b1/metaphlan_4.0.4+ds-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cXc7K4lw/b2/metaphlan_4.0.4+ds-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 323ms CPU time consumed: 245ms Memory peak: 17M (swap: 0B) _ _ _ _ __ ___ ___| |_ __ _ _ __ | |__ | | __ _ _ __ | '_ ` _ \ / _ \ __/ _` | '_ \| '_ \| |/ _` | '_ \ | | | | | | __/ || (_| | |_) | | | | | (_| | | | | |_| |_| |_|\___|\__\__,_| .__/|_| |_|_|\__,_|_| |_| |_| Thu Oct 30 23:56:47 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Oct 30 23:56:47 UTC 2025 I: metaphlan from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-30 23:56:48] INFO: Starting at 2025-10-30 23:56:48.045489 [2025-10-30 23:56:48] INFO: Generating the pages of 1 package(s) [2025-10-30 23:56:48] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/metaphlan didn't produce a buildlog, even though it has been built. [2025-10-30 23:56:48] INFO: Finished at 2025-10-30 23:56:48.484667, took: 0:00:00.439184 Thu Oct 30 23:56:48 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/metaphlan.html Thu Oct 30 23:56:48 UTC 2025 I: Removing signed metaphlan_4.0.4+ds-1_amd64.buildinfo.asc files: removed './b1/metaphlan_4.0.4+ds-1_amd64.buildinfo.asc' removed './b2/metaphlan_4.0.4+ds-1_amd64.buildinfo.asc' 1761868608 amd64 unstable metaphlan Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metaphlan_4.0.4+ds-1.rbuild.log: 85.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/metaphlan_4.0.4+ds-1.rbuild.log.gz [2025-10-30 23:56:48] INFO: Starting at 2025-10-30 23:56:48.986039 [2025-10-30 23:56:49] INFO: Generating the pages of 1 package(s) [2025-10-30 23:56:49] INFO: Finished at 2025-10-30 23:56:49.425585, took: 0:00:00.439553 All cleanup done. Thu Oct 30 23:56:49 UTC 2025 - total duration: 0h 8m 26s. Thu Oct 30 23:56:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-a1ojORrj, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 8min 28.471s CPU time consumed: 4.673s Memory peak: 60.9M (swap: 0B)