Running as unit: rb-build-amd64_33-58403.service ==================================================================================== Thu Apr 24 07:59:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_33) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Thu Apr 24 07:59:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ZBh2YaD5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 07:59:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Apr 24 07:59:54 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-mJuLwc' Thu Apr 24 07:59:55 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Thu Apr 24 07:59:55 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-QpR6xB' ok, let's check if nim-hts is building anywhere yet… ok, nim-hts is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of nim-hts in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Thu Apr 24 08:00:14 UTC 2025 I: starting to build nim-hts/unstable/amd64 on jenkins on '2025-04-24 07:59' Thu Apr 24 08:00:14 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/58403/console.log 1745481614 amd64 unstable nim-hts Thu Apr 24 08:00:14 UTC 2025 I: Downloading source for unstable/nim-hts=0.3.25+ds-2 --2025-04-24 08:00:14-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.25%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2226 (2.2K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.25+ds-2.dsc’ 0K .. 100% 287M=0s 2025-04-24 08:00:15 (287 MB/s) - ‘nim-hts_0.3.25+ds-2.dsc’ saved [2226/2226] --2025-04-24 08:00:14-- http://deb.debian.org/debian/pool/main/n/nim-hts/nim-hts_0.3.25%2bds-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2226 (2.2K) [text/prs.lines.tag] Saving to: ‘nim-hts_0.3.25+ds-2.dsc’ 0K .. 100% 287M=0s 2025-04-24 08:00:15 (287 MB/s) - ‘nim-hts_0.3.25+ds-2.dsc’ saved [2226/2226] Thu Apr 24 08:00:15 UTC 2025 I: nim-hts_0.3.25+ds-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nim-hts Binary: nim-hts-dev, nim-hts-examples Architecture: all Version: 0.3.25+ds-2 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra , Debian Nim Team Homepage: https://github.com/brentp/hts-nim Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/nim-hts Vcs-Git: https://salsa.debian.org/med-team/nim-hts.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libhts-dev Build-Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools Package-List: nim-hts-dev deb libs optional arch=all nim-hts-examples deb libs optional arch=all Checksums-Sha1: d9eaec99c030759b9cbe77c14520a880a2d1ae93 527888 nim-hts_0.3.25+ds.orig.tar.xz ae54a52ac9817794accffab12ca1756ea85223d5 341344 nim-hts_0.3.25+ds-2.debian.tar.xz Checksums-Sha256: b588277375a83d45fc96a3c08be69da0783a805ecaf0945083e8390936ee0f63 527888 nim-hts_0.3.25+ds.orig.tar.xz 91ef6f42d48f8cc84596081eb641dd815349d26aab575f731be8a80b0fc83b52 341344 nim-hts_0.3.25+ds-2.debian.tar.xz Files: 5a5ff42d622f2c3e997812fce01d6030 527888 nim-hts_0.3.25+ds.orig.tar.xz eb1ead192ef4d6a25162dbbc3db7b591 341344 nim-hts_0.3.25+ds-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdO5UkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGCmBAAmwHKO+w4jCnMG8Yj2M2Xd8BPJ+XrRadv ZKeXYiYDzybnvad7f+11/t+HZ9/Qqdt5xTzsHiropgNxLl70bFgymX14Q5TsEtCY wD2nx7xwRa0kzLbEiWZY9hO/MPeMagAnnJKfmNlD94IBGuPVHeiEo3elVA35Xsbu SuyGQnFz7BNCR3MMvLpEOSPHbKlcRXYPAmxnVuPCLnfr4f+MhYd9jhTmhO7If4bJ 2weaBFB5AmcRKbdlS23Ca2T7Q4lnVzD7tTfzWTvpfVFg97lo0lL1DRzsFQPKHjxp CYI/QQ2JSHyPY2JTjndpPbTXKTXCIPrVhFyCNtcU0Nc+Wb0r/lfSZA2+0byY5JVj VfCzCpz/4Kg5214/a/tMLBmFaQe0ItuC9uhl1PsAdHjwl5H+dgOjyqZ1ajl1rCp8 5z9x7hPqTa1juNg5d1pP1PpWR1B8allvURtjrx2iQvpIvLTy0i/JnvjFSNgzPYn1 IamGiljN1LLWe9ekfh3E7uANI8A+SV3E/C7T7mlHR102QKdzkaRD2PDsl6ujlKT9 fAiEln1P0wwqc7xZBEXz71lE2EdRCEWlsee+K3yN3+b2cUVq1JeKacEPh00zjvtU /aZvv5z1log31NCVj8KgLniahJSQIS430lCZxuv7edtPkflyjzoQ1GPyvdiOxxR8 0MUmkEyCPvQ= =F6D+ -----END PGP SIGNATURE----- Thu Apr 24 08:00:15 UTC 2025 I: Checking whether the package is not for us Thu Apr 24 08:00:15 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Thu Apr 24 08:00:15 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Thu Apr 24 08:00:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Apr 24 08:00:15 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-BockoV' ==================================================================================== Thu Apr 24 08:00:16 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 nim-hts unstable /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7 0.3.25+ds-2" as arguments. Thu Apr 24 08:00:16 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-LjpxGqDb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 08:00:16 UTC 2025 I: Downloading source for unstable/nim-hts=0.3.25+ds-2 Reading package lists... NOTICE: 'nim-hts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nim-hts.git Please use: git clone https://salsa.debian.org/med-team/nim-hts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 871 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (dsc) [2226 B] Get:2 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (tar) [528 kB] Get:3 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (diff) [341 kB] Fetched 871 kB in 0s (3292 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'nim-hts' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/nim-hts.git Please use: git clone https://salsa.debian.org/med-team/nim-hts.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 871 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (dsc) [2226 B] Get:2 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (tar) [528 kB] Get:3 http://deb.debian.org/debian unstable/main nim-hts 0.3.25+ds-2 (diff) [341 kB] Fetched 871 kB in 0s (3292 kB/s) Download complete and in download only mode ============================================================================= Building nim-hts in unstable on amd64 on infom01-amd64 now. Date: Thu Apr 24 08:00:16 UTC 2025 Date UTC: Thu Apr 24 08:00:16 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 23 20:00:17 -12 2025 I: pbuilder-time-stamp: 1745481617 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.25+ds-2.dsc] I: copying [./nim-hts_0.3.25+ds.orig.tar.xz] I: copying [./nim-hts_0.3.25+ds-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.25+ds-2.dsc: unsupported subcommand dpkg-source: info: extracting nim-hts in nim-hts-0.3.25+ds dpkg-source: info: unpacking nim-hts_0.3.25+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.25+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch dpkg-source: info: applying no-incompatible-pointer-types.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/477604/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='58259a03850e4c01a652857f7719f85c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='477604' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/pbuilderrc_sim5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/b1 --logfile b1/build.log nim-hts_0.3.25+ds-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/477604/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 117 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: nim but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 117 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/477604 and its subdirectories Starting cleanup. All cleanup done. Thu Apr 24 08:00:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-LjpxGqDb, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 08:00 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 08:00 b2 -rw-r--r-- 1 jenkins jenkins 2226 Dec 3 11:10 nim-hts_0.3.25+ds-2.dsc -rw------- 1 jenkins jenkins 3350 Apr 24 08:00 rbuildlog.2ucgNxQ /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/b1: total 12 -rw-r--r-- 1 jenkins jenkins 9787 Apr 24 08:00 build.log /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/b2: total 0 Thu Apr 24 08:00:50 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 23 20:00:17 -12 2025 I: pbuilder-time-stamp: 1745481617 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nim-hts_0.3.25+ds-2.dsc] I: copying [./nim-hts_0.3.25+ds.orig.tar.xz] I: copying [./nim-hts_0.3.25+ds-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./nim-hts_0.3.25+ds-2.dsc: unsupported subcommand dpkg-source: info: extracting nim-hts in nim-hts-0.3.25+ds dpkg-source: info: unpacking nim-hts_0.3.25+ds.orig.tar.xz dpkg-source: info: unpacking nim-hts_0.3.25+ds-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying dontDoNestedTests.patch dpkg-source: info: applying disable-test-with-sourceless-file.patch dpkg-source: info: applying fix-version-comparision.patch dpkg-source: info: applying no-incompatible-pointer-types.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/477604/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='58259a03850e4c01a652857f7719f85c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='477604' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/pbuilderrc_sim5 --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6N0p7sn7/b1 --logfile b1/build.log nim-hts_0.3.25+ds-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/477604/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), nim, libhts-dev, samtools, tabix, bcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19839 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on nim; however: Package nim is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on tabix; however: Package tabix is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 117 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: nim but it is not installable Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} samtools{a} sensible-utils{a} tabix{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix python3-gffutils python3-matplotlib wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 32.9 MB of archives. After unpacking 117 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/477604 and its subdirectories nim-hts failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.25+ds-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.25+ds-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nim-hts_0.3.25+ds-2.build1.log.gz' Thu Apr 24 08:00:51 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 69.5% -- replaced with stdout Thu Apr 24 08:00:51 UTC 2025 W: Downloading the build dependencies failed Thu Apr 24 08:00:51 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Thu Apr 24 08:00:51 UTC 2025 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-24 08:00:52] INFO: Starting at 2025-04-24 08:00:52.366602 [2025-04-24 08:00:52] INFO: Generating the pages of 1 package(s) [2025-04-24 08:00:52] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/nim-hts didn't produce a buildlog, even though it has been built. [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/nim-hts_0.3.14+ds-1.diff.gz is missing [2025-04-24 08:00:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/nim-hts_0.3.14+ds-1.diff.gz is missing [2025-04-24 08:00:52] INFO: Finished at 2025-04-24 08:00:52.772599, took: 0:00:00.406003 Thu Apr 24 08:00:52 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/nim-hts.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.25+ds-2.rbuild.log: 64.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/nim-hts_0.3.25+ds-2.rbuild.log.gz [2025-04-24 08:00:53] INFO: Starting at 2025-04-24 08:00:53.173852 [2025-04-24 08:00:53] INFO: Generating the pages of 1 package(s) [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/nim-hts_0.3.25+ds-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/nim-hts_0.3.25+ds-2.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/nim-hts_0.3.19+ds-1.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/nim-hts_0.3.19+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/nim-hts_0.3.19+ds-1.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/nim-hts_0.3.14+ds-1.diff.gz is missing [2025-04-24 08:00:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/nim-hts_0.3.14+ds-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/nim-hts_0.3.14+ds-1.diff.gz is missing [2025-04-24 08:00:53] INFO: Finished at 2025-04-24 08:00:53.559465, took: 0:00:00.385616 All cleanup done. Thu Apr 24 08:00:53 UTC 2025 - total duration: 0h 0m 57s. Thu Apr 24 08:00:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ZBh2YaD5, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 59.142s CPU time consumed: 4.957s