Running as unit: rb-build-amd64_33-81142.service; invocation ID: 460d614a30ae474f86a9e768d1a3d223 ==================================================================================== Mon Sep 15 02:47:55 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_33) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Mon Sep 15 02:47:55 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-i6iHyHlF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 02:47:55 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Sep 15 02:47:55 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-68EB0o' Mon Sep 15 02:47:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Sep 15 02:47:56 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-fkLvto' ok, let's check if python-freesasa is building anywhere yet… ok, python-freesasa is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-freesasa in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Mon Sep 15 02:48:18 UTC 2025 I: starting to build python-freesasa/unstable/amd64 on jenkins on '2025-09-15 02:47' Mon Sep 15 02:48:18 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/81142/console.log 1757904498 amd64 unstable python-freesasa Mon Sep 15 02:48:18 UTC 2025 I: Downloading source for unstable/python-freesasa=2.1.0-3 --2025-09-15 02:48:18-- http://deb.debian.org/debian/pool/main/p/python-freesasa/python-freesasa_2.1.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2325 (2.3K) [text/prs.lines.tag] Saving to: ‘python-freesasa_2.1.0-3.dsc’ 0K .. 100% 268M=0s 2025-09-15 02:48:18 (268 MB/s) - ‘python-freesasa_2.1.0-3.dsc’ saved [2325/2325] --2025-09-15 02:48:18-- http://deb.debian.org/debian/pool/main/p/python-freesasa/python-freesasa_2.1.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2325 (2.3K) [text/prs.lines.tag] Saving to: ‘python-freesasa_2.1.0-3.dsc’ 0K .. 100% 268M=0s 2025-09-15 02:48:18 (268 MB/s) - ‘python-freesasa_2.1.0-3.dsc’ saved [2325/2325] Mon Sep 15 02:48:18 UTC 2025 I: python-freesasa_2.1.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-freesasa Binary: python-freesasa-doc, python3-freesasa Architecture: any all Version: 2.1.0-3 Maintainer: Debian Python Team Uploaders: Andrius Merkys , Homepage: https://freesasa.github.io/python/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/python-team/packages/python-freesasa Vcs-Git: https://salsa.debian.org/python-team/packages/python-freesasa.git Testsuite: autopkgtest Testsuite-Triggers: freesasa, python3-all, python3-pytest Build-Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest Package-List: python-freesasa-doc deb doc optional arch=all python3-freesasa deb python optional arch=any Checksums-Sha1: a3e6ea5f9b77a6e89c4adc30261996217c712d03 26680 python-freesasa_2.1.0.orig.tar.gz 54234e88bdb4d1071ad18aa3abd54a469dee48ba 6164 python-freesasa_2.1.0-3.debian.tar.xz Checksums-Sha256: 1babf5f5e6a8ee636b098e894a1fad8df7a93b0ac8145b028c95b632c9d02ac4 26680 python-freesasa_2.1.0.orig.tar.gz 514f942b8725e0a1559ac1f8a2d921e427023fe0ffff81b1b48899c28858832f 6164 python-freesasa_2.1.0-3.debian.tar.xz Files: e7645133cad48235ed6d01b29c6c1e3a 26680 python-freesasa_2.1.0.orig.tar.gz d683d24d6ad7e019066a56b26fd521fd 6164 python-freesasa_2.1.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEd8lhnEnWos3N8v+qQoMEoXSNzHoFAmOM3gUACgkQQoMEoXSN zHqyyA/8Cv10Hi1FqT083cR6Zq6NWhmiC35wqGEFX1Gtd2/k5B/pg8Q2eRXlRzVY ta+O+8tR8AQ3QMtkdx+toLhYdTZ9jpe8avBT0puA5xMO/5XNl2qi2QrB4i6j5MpZ VeQ7Nmk91SJHufrIGzvOaF9YXU9tGAc2v6W914mTpS/iyx9cs9r03RpSUaPeV/Ak vrv04kPOaa4BbSp6K6bjfmaUxAqNegGcvdBu+El7O+7MSHGUFTM4oGEd3PiyHJ9G 0Qlix0xKlKTWicC4F0vAdFa3oidpWi8Iu8fifWLxYVpAmCq+XNh3kk1IrZNQNBPc ieJQHfCPKv+lzFf1dIU8Rh/uO9PUPde8u6NdrImDR7tw6xWGPpK+pjedkLXqp1wo 23CGXn2s2uX6ox+gRgBoL4VgWeUnj/2pYdhw+lsbPuoE6tr/w15VaQvdNpQtuIqt Pk3CrTMfs98+0Kge0aj6Eqff1r8tOHvsATAZmSt8kEQM4emA8XDy+skMzPa8NhMY tzgIoYxaqeuNqOIb+cxOtAoQComKDSBzpd6i1mmnOdFS2sjpuMC6xdo1zpENkJxj rMW/e3j10hRGJobBlTbiojlRtc5zbq+zCmaOzMpJPzrMw3EbWcOskO9nL8CYeQj7 RrDQ8qA9phRHEyFVapRic4hgNKjyCErhMSbC5nwK4tFx+w/F3Zw= =fpRO -----END PGP SIGNATURE----- Mon Sep 15 02:48:18 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 02:48:18 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Mon Sep 15 02:48:18 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Mon Sep 15 02:48:18 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Sep 15 02:48:18 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-tFKop0' ==================================================================================== Mon Sep 15 02:48:19 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 python-freesasa unstable /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli 2.1.0-3" as arguments. Mon Sep 15 02:48:19 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-Z5vb5cjp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 02:48:19 UTC 2025 I: Downloading source for unstable/python-freesasa=2.1.0-3 Reading package lists... NOTICE: 'python-freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-freesasa.git Please use: git clone https://salsa.debian.org/python-team/packages/python-freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.2 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (dsc) [2325 B] Get:2 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (tar) [26.7 kB] Get:3 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (diff) [6164 B] Fetched 35.2 kB in 0s (503 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-freesasa.git Please use: git clone https://salsa.debian.org/python-team/packages/python-freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.2 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (dsc) [2325 B] Get:2 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (tar) [26.7 kB] Get:3 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (diff) [6164 B] Fetched 35.2 kB in 0s (503 kB/s) Download complete and in download only mode ============================================================================= Building python-freesasa in unstable on amd64 on infom01-amd64 now. Date: Mon Sep 15 02:48:19 UTC 2025 Date UTC: Mon Sep 15 02:48:19 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 14:48:19 -12 2025 I: pbuilder-time-stamp: 1757904499 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freesasa_2.1.0-3.dsc] I: copying [./python-freesasa_2.1.0.orig.tar.gz] I: copying [./python-freesasa_2.1.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freesasa_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting python-freesasa in python-freesasa-2.1.0 dpkg-source: info: unpacking python-freesasa_2.1.0.orig.tar.gz dpkg-source: info: unpacking python-freesasa_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-privacy-breach.patch dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6cfe439c0dbd4046be2d4d98ed00d184' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2125833' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_cRkn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1 --logfile b1/build.log python-freesasa_2.1.0-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freesasa (>= 2.1.0-2); however: Package freesasa is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} freesasa{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libxml2-dev{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 freesasa amd64 2.1.2-4+b1 [500 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjson-c-dev amd64 0.18+ds-1 [74.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.1-1 [11.0 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-6 [477 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 48.7 MB in 1s (49.7 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package freesasa. Preparing to unpack .../39-freesasa_2.1.2-4+b1_amd64.deb ... Unpacking freesasa (2.1.2-4+b1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../40-libexpat1-dev_2.7.1-2_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.7.1-2) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../41-libjs-jquery_3.7.1+dfsg+~3.5.33-1_all.deb ... Unpacking libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../42-libjs-sphinxdoc_8.2.3-6_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-6) ... Selecting previously unselected package libjson-c-dev:amd64. Preparing to unpack .../43-libjson-c-dev_0.18+ds-1_amd64.deb ... Unpacking libjson-c-dev:amd64 (0.18+ds-1) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../44-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../45-liblzma-dev_5.8.1-1.1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1.1) ... Selecting previously unselected package libpython3.13:amd64. Preparing to unpack .../46-libpython3.13_3.13.7-1_amd64.deb ... Unpacking libpython3.13:amd64 (3.13.7-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../47-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:amd64. Preparing to unpack .../48-libpython3.13-dev_3.13.7-1_amd64.deb ... Unpacking libpython3.13-dev:amd64 (3.13.7-1) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../49-libpython3-dev_3.13.7-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.13.7-1) ... Selecting previously unselected package libpython3-all-dev:amd64. Preparing to unpack .../50-libpython3-all-dev_3.13.7-1_amd64.deb ... Unpacking libpython3-all-dev:amd64 (3.13.7-1) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../51-libxml2-dev_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../52-python-babel-localedata_2.17.0-1_all.deb ... Unpacking python-babel-localedata (2.17.0-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../53-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-all. Preparing to unpack .../54-python3-all_3.13.7-1_amd64.deb ... Unpacking python3-all (3.13.7-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../55-python3.13-dev_3.13.7-1_amd64.deb ... Unpacking python3.13-dev (3.13.7-1) ... 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Unpacking python3-sphinx (8.2.3-6) ... Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../91-sphinx-rtd-theme-common_3.0.2+dfsg-3_all.deb ... Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Selecting previously unselected package python3-sphinxcontrib.jquery. Preparing to unpack .../92-python3-sphinxcontrib.jquery_4.1-6_all.deb ... Unpacking python3-sphinxcontrib.jquery (4.1-6) ... Selecting previously unselected package python3-sphinx-rtd-theme. Preparing to unpack .../93-python3-sphinx-rtd-theme_3.0.2+dfsg-3_all.deb ... Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up fonts-lato (2.015-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 02:49:28 UTC 2025. Universal Time is now: Mon Sep 15 02:49:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.2-1) ... Setting up libjson-c5:amd64 (0.18+ds-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libjson-c-dev:amd64 (0.18+ds-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up freesasa (2.1.2-4+b1) ... Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Setting up sphinx-common (8.2.3-6) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (5.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-6) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes dpkg-buildpackage: info: source package python-freesasa dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Arias dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem pybuild --with python3,sphinxdoc dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_clean rm -rf docs/build freesasa.egg-info lib make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' debian/rules binary dh binary --buildsystem pybuild --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext building 'freesasa' extension creating build/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c /usr/bin/make --directory docs html make[2]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0/docs' /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build_ext building 'freesasa' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 creating build/lib.linux-x86_64-cpython-313 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c copying build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -> Running Sphinx v8.2.3 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: classes.rst, functions.rst, index.rst, intro.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 4 source files that are out of date updating environment: [new config] 4 added, 0 changed, 0 removed reading sources... [ 25%] classes reading sources... [ 50%] functions reading sources... [ 75%] index reading sources... [100%] intro looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 25%] classes writing output... [ 50%] functions writing output... [ 75%] index writing output... [100%] intro generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[2]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0/docs' make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build -O--buildsystem=pybuild -Npython-freesasa-doc I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: set -e; mkdir --parents /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests; ln -s /usr/share/freesasa/test-data /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests/data; ln -s /usr/share/freesasa /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/share; cp test.py /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; I: pybuild base:311: cd /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; python3.13 -m pytest test.py ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-freesasa-2.1.0 plugins: typeguard-4.4.4 collected 9 items test.py ......... [100%] ============================== 9 passed in 0.32s =============================== I: pybuild pybuild:334: rm -f /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/test.py; rm /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib -r create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/__pycache__/test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ running install_egg_info running egg_info creating freesasa.egg-info writing freesasa.egg-info/PKG-INFO writing dependency_links to freesasa.egg-info/dependency_links.txt writing top-level names to freesasa.egg-info/top_level.txt writing manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'freesasa.egg-info/SOURCES.txt' Copying freesasa.egg-info to /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/freesasa-2.1.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs dh_installdocs -p python-freesasa-doc --doc-main-package python3-freesasa docs/build/html make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs -O--buildsystem=pybuild -Npython-freesasa-doc dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python-freesasa-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-freesasa-dbgsym' in '../python3-freesasa-dbgsym_2.1.0-3_amd64.deb'. dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-deb: building package 'python3-freesasa' in '../python3-freesasa_2.1.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-freesasa_2.1.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-freesasa_2.1.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2125833 and its subdirectories I: Current time: Sun Sep 14 14:51:35 -12 2025 I: pbuilder-time-stamp: 1757904695 Mon Sep 15 02:51:35 UTC 2025 I: Signing ./b1/python-freesasa_2.1.0-3_amd64.buildinfo as python-freesasa_2.1.0-3_amd64.buildinfo.asc Mon Sep 15 02:51:35 UTC 2025 I: Signed ./b1/python-freesasa_2.1.0-3_amd64.buildinfo as ./b1/python-freesasa_2.1.0-3_amd64.buildinfo.asc Mon Sep 15 02:51:35 UTC 2025 - build #1 for python-freesasa/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Mon Sep 15 02:51:35 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Z5vb5cjp, removing. /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 02:51 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 02:48 b2 -rw-rw-r-- 1 jenkins jenkins 2325 Dec 4 2022 python-freesasa_2.1.0-3.dsc -rw------- 1 jenkins jenkins 3483 Sep 15 02:48 rbuildlog.oZ1PKTl /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1: total 768 -rw-r--r-- 1 jenkins jenkins 66027 Sep 15 02:51 build.log -rw-r--r-- 1 jenkins jenkins 30788 Sep 15 02:51 python-freesasa-doc_2.1.0-3_all.deb -rw-r--r-- 1 jenkins jenkins 6164 Sep 15 02:51 python-freesasa_2.1.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2325 Sep 15 02:51 python-freesasa_2.1.0-3.dsc -rw-r--r-- 1 jenkins jenkins 7793 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8675 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2141 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1596 Sep 15 02:51 python-freesasa_2.1.0-3_source.changes -rw-r--r-- 1 jenkins jenkins 481492 Sep 15 02:51 python3-freesasa-dbgsym_2.1.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 157328 Sep 15 02:51 python3-freesasa_2.1.0-3_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2: total 0 Mon Sep 15 02:51:36 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 14:48:19 -12 2025 I: pbuilder-time-stamp: 1757904499 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freesasa_2.1.0-3.dsc] I: copying [./python-freesasa_2.1.0.orig.tar.gz] I: copying [./python-freesasa_2.1.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freesasa_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting python-freesasa in python-freesasa-2.1.0 dpkg-source: info: unpacking python-freesasa_2.1.0.orig.tar.gz dpkg-source: info: unpacking python-freesasa_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-privacy-breach.patch dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6cfe439c0dbd4046be2d4d98ed00d184' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2125833' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_cRkn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1 --logfile b1/build.log python-freesasa_2.1.0-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freesasa (>= 2.1.0-2); however: Package freesasa is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} freesasa{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libxml2-dev{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 freesasa amd64 2.1.2-4+b1 [500 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjson-c-dev amd64 0.18+ds-1 [74.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.1-1 [11.0 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-6 [477 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 48.7 MB in 1s (49.7 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20277 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21292 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. 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Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up python-babel-localedata (2.17.0-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 02:49:28 UTC 2025. Universal Time is now: Mon Sep 15 02:49:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.5) ... Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.2-1) ... Setting up libjson-c5:amd64 (0.18+ds-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libjson-c-dev:amd64 (0.18+ds-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up freesasa (2.1.2-4+b1) ... Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Setting up sphinx-common (8.2.3-6) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (5.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-6) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes dpkg-buildpackage: info: source package python-freesasa dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Arias dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem pybuild --with python3,sphinxdoc dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_clean rm -rf docs/build freesasa.egg-info lib make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' debian/rules binary dh binary --buildsystem pybuild --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext building 'freesasa' extension creating build/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c /usr/bin/make --directory docs html make[2]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0/docs' /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build_ext building 'freesasa' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 creating build/lib.linux-x86_64-cpython-313 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c copying build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -> Running Sphinx v8.2.3 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: classes.rst, functions.rst, index.rst, intro.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 4 source files that are out of date updating environment: [new config] 4 added, 0 changed, 0 removed reading sources... [ 25%] classes reading sources... [ 50%] functions reading sources... [ 75%] index reading sources... [100%] intro looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 25%] classes writing output... [ 50%] functions writing output... [ 75%] index writing output... [100%] intro generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[2]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0/docs' make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build -O--buildsystem=pybuild -Npython-freesasa-doc I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: set -e; mkdir --parents /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests; ln -s /usr/share/freesasa/test-data /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests/data; ln -s /usr/share/freesasa /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/share; cp test.py /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; I: pybuild base:311: cd /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; python3.13 -m pytest test.py ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-freesasa-2.1.0 plugins: typeguard-4.4.4 collected 9 items test.py ......... [100%] ============================== 9 passed in 0.32s =============================== I: pybuild pybuild:334: rm -f /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/test.py; rm /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib -r create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/__pycache__/test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ running install_egg_info running egg_info creating freesasa.egg-info writing freesasa.egg-info/PKG-INFO writing dependency_links to freesasa.egg-info/dependency_links.txt writing top-level names to freesasa.egg-info/top_level.txt writing manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'freesasa.egg-info/SOURCES.txt' Copying freesasa.egg-info to /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/freesasa-2.1.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs dh_installdocs -p python-freesasa-doc --doc-main-package python3-freesasa docs/build/html make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs -O--buildsystem=pybuild -Npython-freesasa-doc dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python-freesasa-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-freesasa-dbgsym' in '../python3-freesasa-dbgsym_2.1.0-3_amd64.deb'. dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-deb: building package 'python3-freesasa' in '../python3-freesasa_2.1.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../python-freesasa_2.1.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-freesasa_2.1.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2125833 and its subdirectories I: Current time: Sun Sep 14 14:51:35 -12 2025 I: pbuilder-time-stamp: 1757904695 Mon Sep 15 02:51:36 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Mon Sep 15 02:51:36 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Mon Sep 15 02:51:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Sep 15 02:51:36 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-adtqW7' ==================================================================================== Sun Oct 18 09:14:37 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 python-freesasa unstable /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli 2.1.0-3" as arguments. Sun Oct 18 09:14:37 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-jHxzCv5N" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 09:14:37 UTC 2026 I: Downloading source for unstable/python-freesasa=2.1.0-3 Reading package lists... NOTICE: 'python-freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-freesasa.git Please use: git clone https://salsa.debian.org/python-team/packages/python-freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.2 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (dsc) [2325 B] Get:2 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (tar) [26.7 kB] Get:3 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (diff) [6164 B] Fetched 35.2 kB in 0s (651 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/python-team/packages/python-freesasa.git Please use: git clone https://salsa.debian.org/python-team/packages/python-freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.2 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (dsc) [2325 B] Get:2 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (tar) [26.7 kB] Get:3 http://deb.debian.org/debian unstable/main python-freesasa 2.1.0-3 (diff) [6164 B] Fetched 35.2 kB in 0s (651 kB/s) Download complete and in download only mode ============================================================================= Re-Building python-freesasa in unstable on amd64 on infom02-amd64 now. Date: Sun Oct 18 09:14:37 UTC 2026 Date UTC: Sun Oct 18 09:14:37 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_BgJI + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-freesasa = debian-installer -o python-freesasa = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-freesasa = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_BgJI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2 --logfile b2/build.log python-freesasa_2.1.0-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 23:14:37 +14 2026 I: pbuilder-time-stamp: 1792314877 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freesasa_2.1.0-3.dsc] I: copying [./python-freesasa_2.1.0.orig.tar.gz] I: copying [./python-freesasa_2.1.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freesasa_2.1.0-3.dsc: no acceptable signature found dpkg-source: info: extracting python-freesasa in python-freesasa-2.1.0 dpkg-source: info: unpacking python-freesasa_2.1.0.orig.tar.gz dpkg-source: info: unpacking python-freesasa_2.1.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-privacy-breach.patch dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 09:14 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=5e44be2326d44ebb8f6baec7041226e3 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2498776 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_BgJI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2 --logfile b2/build.log python-freesasa_2.1.0-3.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cython3, debhelper-compat (= 13), dh-python, freesasa (>= 2.1.0-2), libjson-c-dev, libxml2-dev, python3-all, python3-all-dev, python3-setuptools, python3-sphinx, python3-sphinx-rtd-theme, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on freesasa (>= 2.1.0-2); however: Package freesasa is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} freesasa{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-jquery{a} libjs-sphinxdoc{a} libjson-c-dev{a} libjson-c5{a} libjson-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libxml2-dev{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pygments{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-roman-numerals{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-rtd-theme{a} python3-sphinxcontrib.jquery{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-rtd-theme-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjson-xs-perl libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After unpacking 202 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 cython3 amd64 3.0.11+dfsg-2+b1 [2504 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 40 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 freesasa amd64 2.1.2-4+b1 [500 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libjson-c-dev amd64 0.18+ds-1 [74.8 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 66 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.17.0-1 [6050 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 70 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.17.0-1 [117 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.3-1 [131 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-roman all 5.1-1 [11.0 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b3 [14.0 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 25.0-1 [56.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.4.2-1 [266 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.5.0-1 [116 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.5+dfsg-1 [72.4 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-roman-numerals all 3.1.0-2 [8740 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 3.0.1-1 [63.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.2.3-6 [477 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] Fetched 48.7 MB in 1s (92.3 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20277 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up sgml-base (1.31+nmu1) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up openssl (3.5.2-1) ... Setting up libjson-c5:amd64 (0.18+ds-1) ... Setting up readline-common (8.3-3) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (3.0.2+dfsg-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libjson-c-dev:amd64 (0.18+ds-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up freesasa (2.1.2-4+b1) ... Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Setting up sphinx-common (8.2.3-6) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (5.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-packaging (25.0-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-snowballstemmer (3.0.1-1) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up python3-idna (3.10-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-urllib3 (2.5.0-1) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-roman-numerals (3.1.0-2) ... Setting up python3-imagesize (1.4.1-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-babel (2.17.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-defusedxml (0.7.1-3) ... Setting up python3-charset-normalizer (3.4.3-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.4.2-1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-requests (2.32.5+dfsg-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (8.2.3-6) ... Setting up python3-sphinxcontrib.jquery (4.1-6) ... Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-3) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes dpkg-buildpackage: info: source package python-freesasa dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Arias dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem pybuild --with python3,sphinxdoc dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_clean rm -rf docs/build freesasa.egg-info lib make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' debian/rules binary dh binary --buildsystem pybuild --with python3,sphinxdoc dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-freesasa-2.1.0/src/freesasa.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/freesasa.pyx because it changed. [1/1] Cythonizing src/freesasa.pyx /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext building 'freesasa' extension creating build/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c /usr/bin/make --directory docs html make[2]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0/docs' /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build_ext building 'freesasa' extension x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ilib/src -I. -I/usr/include/python3.13 -c src/freesasa.c -o build/temp.linux-x86_64-cpython-313/src/freesasa.o -DHAVE_CONFIG_H -std=gnu99 creating build/lib.linux-x86_64-cpython-313 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-freesasa-2.1.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/src/freesasa.o -L/usr/lib/x86_64-linux-gnu -o build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -lfreesasa -lxml2 -ljson-c copying build/lib.linux-x86_64-cpython-313/freesasa.cpython-313-x86_64-linux-gnu.so -> Running Sphinx v8.2.3 WARNING: Invalid configuration value found: 'language = None'. Update your configuration to a valid language code. Falling back to 'en' (English). loading translations [en]... done making output directory... done WARNING: html_static_path entry '_static' does not exist Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. [autosummary] generating autosummary for: classes.rst, functions.rst, index.rst, intro.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 4 source files that are out of date updating environment: [new config] 4 added, 0 changed, 0 removed reading sources... [ 25%] classes reading sources... [ 50%] functions reading sources... [ 75%] index reading sources... [100%] intro looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 25%] classes writing output... [ 50%] functions writing output... [ 75%] index writing output... [100%] intro generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 2 warnings. The HTML pages are in build/html. make[2]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0/docs' make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_auto_build -O--buildsystem=pybuild -Npython-freesasa-doc I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_ext dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: set -e; mkdir --parents /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests; ln -s /usr/share/freesasa/test-data /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/tests/data; ln -s /usr/share/freesasa /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib/share; cp test.py /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; I: pybuild base:311: cd /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build; python3.13 -m pytest test.py ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/python-freesasa-2.1.0 plugins: typeguard-4.4.4 collected 9 items test.py ......... [100%] ============================== 9 passed in 0.18s =============================== I: pybuild pybuild:334: rm -f /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/test.py; rm /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib -r create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_ext running install_lib creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/freesasa.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ copying /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/__pycache__/test.cpython-313-pytest-8.4.2.pyc -> /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/__pycache__ running install_egg_info running egg_info creating freesasa.egg-info writing freesasa.egg-info/PKG-INFO writing dependency_links to freesasa.egg-info/dependency_links.txt writing top-level names to freesasa.egg-info/top_level.txt writing manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest file 'freesasa.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'freesasa.egg-info/SOURCES.txt' Copying freesasa.egg-info to /build/reproducible-path/python-freesasa-2.1.0/debian/python3-freesasa/usr/lib/python3.13/dist-packages/freesasa-2.1.0.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs dh_installdocs -p python-freesasa-doc --doc-main-package python3-freesasa docs/build/html make[1]: Leaving directory '/build/reproducible-path/python-freesasa-2.1.0' dh_installdocs -O--buildsystem=pybuild -Npython-freesasa-doc dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python-freesasa-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-freesasa-dbgsym' in '../python3-freesasa-dbgsym_2.1.0-3_amd64.deb'. dpkg-deb: building package 'python3-freesasa' in '../python3-freesasa_2.1.0-3_amd64.deb'. dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-freesasa_2.1.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-freesasa_2.1.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2498776 and its subdirectories I: Current time: Sun Oct 18 23:16:40 +14 2026 I: pbuilder-time-stamp: 1792315000 + false + set +x Sun Oct 18 09:16:40 UTC 2026 I: Signing ./b2/python-freesasa_2.1.0-3_amd64.buildinfo as python-freesasa_2.1.0-3_amd64.buildinfo.asc Sun Oct 18 09:16:40 UTC 2026 I: Signed ./b2/python-freesasa_2.1.0-3_amd64.buildinfo as ./b2/python-freesasa_2.1.0-3_amd64.buildinfo.asc Sun Oct 18 09:16:40 UTC 2026 - build #2 for python-freesasa/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 09:16:40 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-jHxzCv5N, removing. /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli: total 88 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 02:51 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 02:53 b2 -rw-rw-r-- 1 jenkins jenkins 2325 Dec 4 2022 python-freesasa_2.1.0-3.dsc -rw------- 1 jenkins jenkins 69799 Sep 15 02:51 rbuildlog.oZ1PKTl /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1: total 780 -rw-r--r-- 1 jenkins jenkins 66027 Sep 15 02:51 build.log -rw-r--r-- 1 jenkins jenkins 30788 Sep 15 02:51 python-freesasa-doc_2.1.0-3_all.deb -rw-r--r-- 1 jenkins jenkins 6164 Sep 15 02:51 python-freesasa_2.1.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2325 Sep 15 02:51 python-freesasa_2.1.0-3.dsc -rw-r--r-- 1 jenkins jenkins 7793 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8675 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2141 Sep 15 02:51 python-freesasa_2.1.0-3_amd64.changes -rw-r--r-- 1 jenkins jenkins 1596 Sep 15 02:51 python-freesasa_2.1.0-3_source.changes -rw-r--r-- 1 jenkins jenkins 481492 Sep 15 02:51 python3-freesasa-dbgsym_2.1.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 157328 Sep 15 02:51 python3-freesasa_2.1.0-3_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2: total 768 -rw-rw-r-- 1 jenkins jenkins 67951 Sep 15 02:53 build.log -rw-r--r-- 1 jenkins jenkins 30788 Sep 15 02:53 python-freesasa-doc_2.1.0-3_all.deb -rw-r--r-- 1 jenkins jenkins 6164 Sep 15 02:53 python-freesasa_2.1.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2325 Sep 15 02:53 python-freesasa_2.1.0-3.dsc -rw-rw-r-- 1 jenkins jenkins 7787 Sep 15 02:53 python-freesasa_2.1.0-3_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 8669 Sep 15 02:53 python-freesasa_2.1.0-3_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 2141 Sep 15 02:53 python-freesasa_2.1.0-3_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1596 Sep 15 02:53 python-freesasa_2.1.0-3_source.changes -rw-r--r-- 1 jenkins jenkins 481492 Sep 15 02:53 python3-freesasa-dbgsym_2.1.0-3_amd64.deb -rw-r--r-- 1 jenkins jenkins 157328 Sep 15 02:53 python3-freesasa_2.1.0-3_amd64.deb Mon Sep 15 02:53:40 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Mon Sep 15 02:53:41 UTC 2025 I: python-freesasa_2.1.0-3_amd64.changes: Format: 1.8 Date: Sun, 04 Dec 2022 17:19:35 +0000 Source: python-freesasa Binary: python-freesasa-doc python3-freesasa python3-freesasa-dbgsym Architecture: all amd64 Version: 2.1.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Python Team Changed-By: Emmanuel Arias Description: python-freesasa-doc - Python bindings for FreeSASA (common documentation) python3-freesasa - Python bindings for FreeSASA (Python 3) Changes: python-freesasa (2.1.0-3) unstable; urgency=medium . [ Emmanuel Arias ] * Team upload * d/rules: Stop using 'python3 setup.py test' to run test suite. Use pytest instead. * d/control: Add python3-pytest as Build-Depends. . [ Jeroen Ploemen ] * Tests: rewrite autopkgtest, loop over all supported Python versions. * Control: remove Testsuite: autopkgtest-pkg-python, package comes with a non-trivial autopkgtest. Checksums-Sha1: 1cf1f1e1c2d996728a027d8e091a630b147ff3e3 30788 python-freesasa-doc_2.1.0-3_all.deb b371c44cfa15c501ef47a9dce4974a5e6ab5a8ad 7793 python-freesasa_2.1.0-3_amd64.buildinfo 686f0cae90e075eb464da439e2effff408e30876 481492 python3-freesasa-dbgsym_2.1.0-3_amd64.deb 8a86a0acb6620ca3f3e25f22e7062fe6ee15175d 157328 python3-freesasa_2.1.0-3_amd64.deb Checksums-Sha256: 325cfa84e6b59e027e8e9b63e7caf0f4b0bc271c073cb994650ad4ecfa59fb00 30788 python-freesasa-doc_2.1.0-3_all.deb 134804f91627aa7ae95083d2d10af6de58ab7e88914236df72fd5313262730a3 7793 python-freesasa_2.1.0-3_amd64.buildinfo 5102eae6377e412f480e0a52ba008c6ada4b32e2b325a713d96b44eba125f9ee 481492 python3-freesasa-dbgsym_2.1.0-3_amd64.deb 10de83d719f413eb26237c7c6f16e0d5706af2ae3caaaec90798694be142847c 157328 python3-freesasa_2.1.0-3_amd64.deb Files: 4a759b1074614a294f7111e59411e5c1 30788 doc optional python-freesasa-doc_2.1.0-3_all.deb 790c722951a63094c6ab3e3f646fda72 7793 python optional python-freesasa_2.1.0-3_amd64.buildinfo 95fb472bbbd0327456ef137e5ec30c24 481492 debug optional python3-freesasa-dbgsym_2.1.0-3_amd64.deb 02890e4b01a46173545bbf2751d809df 157328 python optional python3-freesasa_2.1.0-3_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-freesasa_2.1.0-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-freesasa_2.1.0-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/python-freesasa_2.1.0-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/python-freesasa_2.1.0-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/python-freesasa_2.1.0-3_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-freesasa_2.1.0-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-15 02:51:35.914074147 +0000 +++ b2/build.log 2025-09-15 02:53:40.646234587 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 14:48:19 -12 2025 -I: pbuilder-time-stamp: 1757904499 +I: Current time: Sun Oct 18 23:14:37 +14 2026 +I: pbuilder-time-stamp: 1792314877 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying build.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 09:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='6cfe439c0dbd4046be2d4d98ed00d184' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2125833' - PS1='# ' - PS2='> ' + INVOCATION_ID=5e44be2326d44ebb8f6baec7041226e3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2498776 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_cRkn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1 --logfile b1/build.log python-freesasa_2.1.0-3.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/pbuilderrc_BgJI --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2 --logfile b2/build.log python-freesasa_2.1.0-3.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2125833/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -236,7 +268,7 @@ Get: 106 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-3 [1023 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-sphinxcontrib.jquery all 4.1-6 [7496 B] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-3 [29.7 kB] -Fetched 48.7 MB in 1s (49.7 MB/s) +Fetched 48.7 MB in 1s (92.3 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -590,8 +622,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Sep 15 02:49:28 UTC 2025. -Universal Time is now: Mon Sep 15 02:49:28 UTC 2025. +Local time is now: Sun Oct 18 09:15:44 UTC 2026. +Universal Time is now: Sun Oct 18 09:15:44 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -705,7 +737,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-freesasa-2.1.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freesasa_2.1.0-3_source.changes dpkg-buildpackage: info: source package python-freesasa dpkg-buildpackage: info: source version 2.1.0-3 dpkg-buildpackage: info: source distribution unstable @@ -881,8 +917,8 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/documentation_options.js +Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-freesasa-2.1.0/docs/build/html/_static/js/versions.js copying static files: done @@ -943,7 +979,7 @@ test.py ......... [100%] -============================== 9 passed in 0.32s =============================== +============================== 9 passed in 0.18s =============================== I: pybuild pybuild:334: rm -f /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/test.py; rm /build/reproducible-path/python-freesasa-2.1.0/.pybuild/cpython3_3.13_freesasa/build/lib -r create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1032,14 +1068,14 @@ dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild -dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dpkg-gencontrol: warning: package python-freesasa-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined +dpkg-gencontrol: warning: Provides field of package python3-freesasa: substitution variable ${python3:Provides} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-freesasa-dbgsym' in '../python3-freesasa-dbgsym_2.1.0-3_amd64.deb'. -dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-deb: building package 'python3-freesasa' in '../python3-freesasa_2.1.0-3_amd64.deb'. +dpkg-deb: building package 'python-freesasa-doc' in '../python-freesasa-doc_2.1.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-freesasa_2.1.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-freesasa_2.1.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1047,12 +1083,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2498776/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2125833 and its subdirectories -I: Current time: Sun Sep 14 14:51:35 -12 2025 -I: pbuilder-time-stamp: 1757904695 +I: removing directory /srv/workspace/pbuilder/2498776 and its subdirectories +I: Current time: Sun Oct 18 23:16:40 +14 2026 +I: pbuilder-time-stamp: 1792315000 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-freesasa_2.1.0-3.diff: 69.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/python-freesasa_2.1.0-3.diff.gz b2/build.log: 82.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.4% -- replaced with stdout Mon Sep 15 02:53:41 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-freesasa_unstable_amd64_1757904821 + touch /var/log/reproducible-builds/diffoscope_stamp_python-freesasa_unstable_amd64_1757904821 + RESULT=0 + systemd-run '--description=diffoscope on python-freesasa/2.1.0-3 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_33-81142 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli --run-session -c jenkins-reproducible-unstable-diffoscope-f07a1d20-a4a4-407f-af05-78c857bc9f46 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/dbd-tmp-8hw1XH0 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1/python-freesasa_2.1.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2/python-freesasa_2.1.0-3_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_33-81142.service; invocation ID: 9cca107a7f0a4d3a9133b1198ffde420 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/python-freesasa_2.1.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b1/python-freesasa_2.1.0-3_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.tV4hRyli/b2/python-freesasa_2.1.0-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 201ms CPU time consumed: 167ms Memory peak: 17.7M (swap: 0B) _ _ __ _ __ _ _| |_| |__ ___ _ __ / _|_ __ ___ ___ ___ __ _ ___ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| |_| '__/ _ \/ _ \/ __|/ _` / __| | |_) | |_| | |_| | | | (_) | | | |_____| _| | | __/ __/\__ \ (_| \__ \ | .__/ \__, |\__|_| |_|\___/|_| |_| |_| |_| \___|\___||___/\__,_|___/ |_| |___/ __ _ / _` | | (_| | \__,_| Mon Sep 15 02:53:42 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 15 02:53:42 UTC 2025 I: python-freesasa from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 02:53:42] INFO: Starting at 2025-09-15 02:53:42.579274 [2025-09-15 02:53:42] INFO: Generating the pages of 1 package(s) [2025-09-15 02:53:42] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/python-freesasa didn't produce a buildlog, even though it has been built. [2025-09-15 02:53:42] INFO: Finished at 2025-09-15 02:53:42.788999, took: 0:00:00.209728 Mon Sep 15 02:53:42 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-freesasa.html Mon Sep 15 02:53:42 UTC 2025 I: Removing signed python-freesasa_2.1.0-3_amd64.buildinfo.asc files: removed './b1/python-freesasa_2.1.0-3_amd64.buildinfo.asc' removed './b2/python-freesasa_2.1.0-3_amd64.buildinfo.asc' 1757904822 amd64 unstable python-freesasa Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-freesasa_2.1.0-3.rbuild.log: 80.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/python-freesasa_2.1.0-3.rbuild.log.gz [2025-09-15 02:53:43] INFO: Starting at 2025-09-15 02:53:43.097618 [2025-09-15 02:53:43] INFO: Generating the pages of 1 package(s) [2025-09-15 02:53:43] INFO: Finished at 2025-09-15 02:53:43.307899, took: 0:00:00.210284 All cleanup done. Mon Sep 15 02:53:43 UTC 2025 - total duration: 0h 5m 47s. Mon Sep 15 02:53:43 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-i6iHyHlF, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 5min 47.516s CPU time consumed: 3.011s Memory peak: 42M (swap: 0B)