Running as unit: rb-build-amd64_33-81248.service; invocation ID: a4e7e60754be412ab2a01b68dba2716b ==================================================================================== Mon Sep 15 11:42:22 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_33) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Mon Sep 15 11:42:22 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-tmULtcGU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 11:42:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Sep 15 11:42:22 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Wbwrsx' Mon Sep 15 11:42:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Sep 15 11:42:23 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-RckHKL' ok, let's check if kmc is building anywhere yet… ok, kmc is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of kmc in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Mon Sep 15 11:42:44 UTC 2025 I: starting to build kmc/unstable/amd64 on jenkins on '2025-09-15 11:42' Mon Sep 15 11:42:44 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/81248/console.log 1757936564 amd64 unstable kmc Mon Sep 15 11:42:44 UTC 2025 I: Downloading source for unstable/kmc=3.2.4+dfsg-1 --2025-09-15 11:42:44-- http://deb.debian.org/debian/pool/main/k/kmc/kmc_3.2.4%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘kmc_3.2.4+dfsg-1.dsc’ 0K .. 100% 255M=0s 2025-09-15 11:42:44 (255 MB/s) - ‘kmc_3.2.4+dfsg-1.dsc’ saved [2234/2234] --2025-09-15 11:42:44-- http://deb.debian.org/debian/pool/main/k/kmc/kmc_3.2.4%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘kmc_3.2.4+dfsg-1.dsc’ 0K .. 100% 255M=0s 2025-09-15 11:42:44 (255 MB/s) - ‘kmc_3.2.4+dfsg-1.dsc’ saved [2234/2234] Mon Sep 15 11:42:44 UTC 2025 I: kmc_3.2.4+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kmc Binary: kmc, libkmc-dev Architecture: any Version: 3.2.4+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Jorge Soares , Sascha Steinbiss , Kevin Murray , Étienne Mollier Homepage: https://sun.aei.polsl.pl/kmc Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/kmc Vcs-Git: https://salsa.debian.org/med-team/kmc.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper Package-List: kmc deb science optional arch=any libkmc-dev deb libdevel optional arch=any Checksums-Sha1: 9c02956aeb8f9534ba9911c79ec9457e9e70c897 408640 kmc_3.2.4+dfsg.orig.tar.xz 48ef15ed4f22a2613367b8635927affcdc08b7b6 33888 kmc_3.2.4+dfsg-1.debian.tar.xz Checksums-Sha256: c3c662ed458eefe75d718a8b9c7c2d1c46853a5215694202e9e7f044eae70859 408640 kmc_3.2.4+dfsg.orig.tar.xz ee1347f791fac3abe653cd2dc9094a0683002a1eca7fc27a51d03e54ce6b6ac0 33888 kmc_3.2.4+dfsg-1.debian.tar.xz Files: d158fcb576dfb86b7746b6b54aadcfa6 408640 kmc_3.2.4+dfsg.orig.tar.xz 89dc9336e6f2b933f3f23a3b5e7e1542 33888 kmc_3.2.4+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmXQvVsACgkQ6NN64vCf SHLSFw//amGp5aW8uZL6hrntmiJX+m2JqsYR3PpX07JqMGndcZkNxPwqZOBJYQKv MmOTBGue4r/pjux6faqTgJhq5ia6UP1n9726fJ83zuTRcqrcFRlq+eIZltHT1aJc c6XzpnWpYDfketOg/9UZzBILM9w6ZPtT0IIWjdbxxN7/+5FWDR8PWCKycne0HjOt fgiRMqHwcB5Vxn9OOa+elFYeDKJH3AtT1JGeGepmn4jXc5Um0rbXzZeL4jgq3cv2 z9uzXQUxL7yGP/IrW2EWmC+oGgvwW1x3fxhxpE0+/AMBCZIaBhxc0af6an9eP7q2 E9mZqrtVALwj65F45qe78WiZ2L/gytzhv0avStL0XFy8lxjh8JBMrdSWRqJhw7kx Z/w5Gva46Yw8r4nOTJv7Cf+dTBvrOxd/Re3757KVXKa39OW6zrd4I2Ss4TJBU44u aRk1xVmOI/KLY/yaUojxieRxUk45zrBvcRg9GUBTIxo4qHjDI+b7v+UKothdcM7n /p1zytawj78F3PnOBjHwkf1cmvWxOCyWBt+V2sv7tZibYhripQnWJwBd8SjHUk70 /IcijvpEew5mfmU1g8Hz7rlmgpxKaksrHfjsNMzpqxXITWaHcjGpt23VZcATFHEc OpebeIek8bzUh7a6fTf2O0WF6Mr99e8keXOZ+tHjDAl+qGCCzy4= =tJeU -----END PGP SIGNATURE----- Mon Sep 15 11:42:44 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 11:42:44 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Mon Sep 15 11:42:44 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Mon Sep 15 11:42:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Sep 15 11:42:44 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-t1B7MN' ==================================================================================== Mon Sep 15 11:42:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 kmc unstable /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB 3.2.4+dfsg-1" as arguments. Mon Sep 15 11:42:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-12rSk8Ny" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 11:42:45 UTC 2025 I: Downloading source for unstable/kmc=3.2.4+dfsg-1 Reading package lists... NOTICE: 'kmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmc.git Please use: git clone https://salsa.debian.org/med-team/kmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 445 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (dsc) [2234 B] Get:2 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (tar) [409 kB] Get:3 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (diff) [33.9 kB] Fetched 445 kB in 2s (227 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmc.git Please use: git clone https://salsa.debian.org/med-team/kmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 445 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (dsc) [2234 B] Get:2 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (tar) [409 kB] Get:3 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (diff) [33.9 kB] Fetched 445 kB in 2s (227 kB/s) Download complete and in download only mode ============================================================================= Building kmc in unstable on amd64 on infom01-amd64 now. Date: Mon Sep 15 11:42:47 UTC 2025 Date UTC: Mon Sep 15 11:42:47 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 23:42:47 -12 2025 I: pbuilder-time-stamp: 1757936567 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmc_3.2.4+dfsg-1.dsc] I: copying [./kmc_3.2.4+dfsg.orig.tar.xz] I: copying [./kmc_3.2.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmc_3.2.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting kmc in kmc-3.2.4+dfsg dpkg-source: info: unpacking kmc_3.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking kmc_3.2.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-shared-libs dpkg-source: info: applying makefile.patch dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying disable-python-bindings.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying simde dpkg-source: info: applying support-mixed-march.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4f2a446504d2420d8de6ddeb3515c8c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2298204' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_nA4f --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1 --logfile b1/build.log kmc_3.2.4+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libruby{a} libruby3.3{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl fonts-lato libarchive-cpio-perl libjs-jquery libltdl-dev libmail-sendmail-perl lynx ruby-sdbm wget zip 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 92.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.7 MB in 1s (32.6 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.5.2-1) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.19) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Setting up rake (13.2.1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: git: No such file or directory rm -f kmc_core/*.o rm -f kmc_api/*.o rm -f kmc_dump/*.o rm -f kmc_tools/*.o rm -f py_kmc_api/*.o rm -f py_kmc_api/*.so rm -rf bin rm -rf include rm -f libkmc.a make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_build -- SIMD=1 make -j12 "INSTALL=install --strip-program=true" SIMD=1 make[2]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[2]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/rev_byte.cpp -o kmc_core/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_writer.cpp -o kmc_core/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/timer.cpp -o kmc_core/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/develop.cpp -o kmc_core/develop.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmer.cpp -o kmc_core/kmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/splitter.cpp -o kmc_core/splitter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse2 -c kmc_core/raduls_sse2.cpp -o kmc_core/raduls_sse2.o kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_CLI/kmc.cpp:6: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_sse2.cpp:20: kmc_core/raduls_impl.h:769:2: warning: #warning "building raduls radix sort for sse2" [-Wcpp] 769 | #warning "building raduls radix sort for sse2" | ^~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/bkb_reader.h:15, from kmc_core/bkb_reader.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/bkb_writer.h:14, from kmc_core/bkb_writer.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/develop.cpp:3: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/develop.h:4, from kmc_core/develop.cpp:2: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_completer.h:14, from kmc_core/kb_completer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_completer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/fastq_reader.h:15, from kmc_core/fastq_reader.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_storer.h:15, from kmc_core/kb_storer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/fastq_reader.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_storer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/splitter.h:16, from kmc_core/splitter.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/splitter.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/kb_collector.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kb_collector.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kmc.h:15, from kmc_core/kmc_runner.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kmc.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_sse41.cpp:17: kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] 763 | #warning "building raduls radix sort for sse4.1" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_avx2.cpp:11: kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] 757 | #warning "building raduls radix sort for avx2" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o In file included from kmc_core/raduls_avx.cpp:14: kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] 760 | #warning "building raduls radix sort for avx" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kff_writer.cpp -o kmc_core/kff_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o kmc_tools/kmc_tools.cpp:613:9: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 613 | ~CApplication<1>() | ^ kmc_tools/kmc_tools.cpp:613:9: note: remove the '< >' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': kmc_tools/kff_info_reader.cpp:35:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:40:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 40 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:46:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fread(footer_size_str, 1, 12, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:55:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:68:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:77:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:90:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:93:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:97:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:100:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:106:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:112:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 112 | fread(tmp.data(), 1, sizeof(free_size), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:137:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:142:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 142 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:151:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 151 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:155:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:162:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 162 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:174:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 174 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:183:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:208:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 208 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:215:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': kmc_tools/kff_info_reader.cpp:254:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 254 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': kmc_tools/kff_info_reader.cpp:289:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:291:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 291 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o In file included from kmc_tools/kff_info_reader.cpp:1: In copy constructor 'CKFFVariables::CKFFVariables(const CKFFVariables&)', inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:233:34: kmc_tools/kff_info_reader.h:40:8: warning: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct CKFFVariables | ^~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:210:23: note: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' was declared here 210 | CKFFVariables section; | ^~~~~~~ In file included from kmc_tools/db_reader_factory.h:8, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, from kmc_tools/kmc_tools.cpp:17: kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 8]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/kmc_tools.cpp:16: kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 7]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 6]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 5]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 4]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 3]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 2]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:17: kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(&kmc_version, sizeof(uint32), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&header_offset, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(&sig_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(raw, 1, 4, file); | ~~~~~^~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 1]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -lz mkdir -p include cp kmc_core/kmc_runner.h include/kmc_runner.h mkdir -p bin ar rcs bin/libkmc_core.a kmc_core/mem_disk_file.o kmc_core/rev_byte.o kmc_core/bkb_writer.o kmc_core/cpu_info.o kmc_core/bkb_reader.o kmc_core/fastq_reader.o kmc_core/timer.o kmc_core/develop.o kmc_core/kb_completer.o kmc_core/kb_storer.o kmc_core/kmer.o kmc_core/splitter.o kmc_core/kb_collector.o kmc_core/kmc_runner.o kmc_core/raduls_sse2.o kmc_core/raduls_sse41.o kmc_core/raduls_avx2.o kmc_core/raduls_avx.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc kmc_CLI/kmc.o bin/libkmc_core.a -lz make[2]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-2jfcsjF2 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/kmc-3.2.4\+dfsg/debian/tmp dh_install install -m0755 -d debian/kmc/usr/bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc/usr/bin/ install -m0755 -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h debian/libkmc-dev/usr/include/kmc/ install -m0755 -d debian/libkmc-dev/usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./bin/libkmc_core.a ./libkmc.a debian/libkmc-dev/usr/lib/x86_64-linux-gnu/ dh_installdocs install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/TODO debian/kmc/usr/share/doc/kmc/TODO.Debian install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' mkdir -p /build/reproducible-path/kmc-3.2.4+dfsg/debian/man /build/reproducible-path/kmc-3.2.4+dfsg/debian/usage_to_man Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.adoc cp /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.? /build/reproducible-path/kmc-3.2.4+dfsg/debian/man dh_installman -- install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/reproducible-path/kmc-3.2.4+dfsg' cd '/build/reproducible-path/kmc-3.2.4+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -- debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug debian/kmc/usr/bin/kmc install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/kmc/usr/lib/debug install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym install -m0755 -d debian/.debhelper/kmc dh_makeshlibs -a rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump dh_installdeb install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " install -m0755 -d debian/kmc/DEBIAN echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-3), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=02f403fdaf100e8e2730719d187da0a2493c07ff 1d4f91c850cd0b23efecb939d95ce68aad54336e bf0f01bfd9f0b90538542a3de75c63ec70eaecef" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libkmc-dev/DEBIAN echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -cdebian/control -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.8.2-3), " dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_md5sums install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.2.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.4+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2298204 and its subdirectories I: Current time: Sun Sep 14 23:46:36 -12 2025 I: pbuilder-time-stamp: 1757936796 Mon Sep 15 11:46:36 UTC 2025 I: Signing ./b1/kmc_3.2.4+dfsg-1_amd64.buildinfo as kmc_3.2.4+dfsg-1_amd64.buildinfo.asc Mon Sep 15 11:46:36 UTC 2025 I: Signed ./b1/kmc_3.2.4+dfsg-1_amd64.buildinfo as ./b1/kmc_3.2.4+dfsg-1_amd64.buildinfo.asc Mon Sep 15 11:46:36 UTC 2025 - build #1 for kmc/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Mon Sep 15 11:46:36 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-12rSk8Ny, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 11:46 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 11:42 b2 -rw-rw-r-- 1 jenkins jenkins 2234 Feb 17 2024 kmc_3.2.4+dfsg-1.dsc -rw------- 1 jenkins jenkins 3335 Sep 15 11:42 rbuildlog.yHdDCVQ /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1: total 25132 -rw-r--r-- 1 jenkins jenkins 109336 Sep 15 11:46 build.log -rw-r--r-- 1 jenkins jenkins 23330628 Sep 15 11:46 kmc-dbgsym_3.2.4+dfsg-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 33888 Sep 15 11:46 kmc_3.2.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Sep 15 11:46 kmc_3.2.4+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 6205 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7087 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1655 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1026968 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1443 Sep 15 11:46 kmc_3.2.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 408640 Sep 15 11:46 kmc_3.2.4+dfsg.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 790496 Sep 15 11:46 libkmc-dev_3.2.4+dfsg-1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2: total 0 Mon Sep 15 11:46:37 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 23:42:47 -12 2025 I: pbuilder-time-stamp: 1757936567 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmc_3.2.4+dfsg-1.dsc] I: copying [./kmc_3.2.4+dfsg.orig.tar.xz] I: copying [./kmc_3.2.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmc_3.2.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting kmc in kmc-3.2.4+dfsg dpkg-source: info: unpacking kmc_3.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking kmc_3.2.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-shared-libs dpkg-source: info: applying makefile.patch dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying disable-python-bindings.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying simde dpkg-source: info: applying support-mixed-march.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4f2a446504d2420d8de6ddeb3515c8c1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2298204' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_nA4f --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1 --logfile b1/build.log kmc_3.2.4+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libruby{a} libruby3.3{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl fonts-lato libarchive-cpio-perl libjs-jquery libltdl-dev libmail-sendmail-perl lynx ruby-sdbm wget zip 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 92.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.7 MB in 1s (32.6 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Selecting previously unselected package libffi8:amd64. Preparing to unpack .../21-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../22-libyaml-0-2_0.2.5-2_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-2) ... Selecting previously unselected package libruby3.3:amd64. Preparing to unpack .../23-libruby3.3_3.3.8-2_amd64.deb ... Unpacking libruby3.3:amd64 (3.3.8-2) ... Selecting previously unselected package ruby3.3. Preparing to unpack .../24-ruby3.3_3.3.8-2_amd64.deb ... Unpacking ruby3.3 (3.3.8-2) ... Selecting previously unselected package libruby:amd64. Preparing to unpack .../25-libruby_1%3a3.3+b1_amd64.deb ... Unpacking libruby:amd64 (1:3.3+b1) ... Selecting previously unselected package ruby-rubygems. Preparing to unpack .../26-ruby-rubygems_3.6.7-2_all.deb ... Unpacking ruby-rubygems (3.6.7-2) ... Selecting previously unselected package ruby. 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Unpacking libsimde-dev (0.8.2-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../53-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up ruby-csv (3.3.4-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.5.2-1) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.19) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Setting up rake (13.2.1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: git: No such file or directory rm -f kmc_core/*.o rm -f kmc_api/*.o rm -f kmc_dump/*.o rm -f kmc_tools/*.o rm -f py_kmc_api/*.o rm -f py_kmc_api/*.so rm -rf bin rm -rf include rm -f libkmc.a make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_build -- SIMD=1 make -j12 "INSTALL=install --strip-program=true" SIMD=1 make[2]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[2]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/rev_byte.cpp -o kmc_core/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_writer.cpp -o kmc_core/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/timer.cpp -o kmc_core/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/develop.cpp -o kmc_core/develop.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmer.cpp -o kmc_core/kmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/splitter.cpp -o kmc_core/splitter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse2 -c kmc_core/raduls_sse2.cpp -o kmc_core/raduls_sse2.o kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_CLI/kmc.cpp:6: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_sse2.cpp:20: kmc_core/raduls_impl.h:769:2: warning: #warning "building raduls radix sort for sse2" [-Wcpp] 769 | #warning "building raduls radix sort for sse2" | ^~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/bkb_reader.h:15, from kmc_core/bkb_reader.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/bkb_writer.h:14, from kmc_core/bkb_writer.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/develop.cpp:3: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/develop.h:4, from kmc_core/develop.cpp:2: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_completer.h:14, from kmc_core/kb_completer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_completer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/fastq_reader.h:15, from kmc_core/fastq_reader.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_storer.h:15, from kmc_core/kb_storer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/fastq_reader.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_storer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/splitter.h:16, from kmc_core/splitter.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/splitter.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/kb_collector.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kb_collector.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kmc.h:15, from kmc_core/kmc_runner.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kmc.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_sse41.cpp:17: kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] 763 | #warning "building raduls radix sort for sse4.1" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_avx2.cpp:11: kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] 757 | #warning "building raduls radix sort for avx2" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o In file included from kmc_core/raduls_avx.cpp:14: kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] 760 | #warning "building raduls radix sort for avx" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kff_writer.cpp -o kmc_core/kff_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o kmc_tools/kmc_tools.cpp:613:9: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 613 | ~CApplication<1>() | ^ kmc_tools/kmc_tools.cpp:613:9: note: remove the '< >' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': kmc_tools/kff_info_reader.cpp:35:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:40:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 40 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:46:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fread(footer_size_str, 1, 12, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:55:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:68:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:77:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:90:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:93:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:97:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:100:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:106:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:112:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 112 | fread(tmp.data(), 1, sizeof(free_size), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:137:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:142:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 142 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:151:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 151 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:155:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:162:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 162 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:174:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 174 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:183:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:208:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 208 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:215:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': kmc_tools/kff_info_reader.cpp:254:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 254 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': kmc_tools/kff_info_reader.cpp:289:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:291:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 291 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o In file included from kmc_tools/kff_info_reader.cpp:1: In copy constructor 'CKFFVariables::CKFFVariables(const CKFFVariables&)', inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:233:34: kmc_tools/kff_info_reader.h:40:8: warning: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct CKFFVariables | ^~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:210:23: note: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' was declared here 210 | CKFFVariables section; | ^~~~~~~ In file included from kmc_tools/db_reader_factory.h:8, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, from kmc_tools/kmc_tools.cpp:17: kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 8]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/kmc_tools.cpp:16: kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 7]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 6]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 5]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 4]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 3]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 2]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:17: kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(&kmc_version, sizeof(uint32), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&header_offset, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(&sig_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(raw, 1, 4, file); | ~~~~~^~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 1]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -lz mkdir -p include cp kmc_core/kmc_runner.h include/kmc_runner.h mkdir -p bin ar rcs bin/libkmc_core.a kmc_core/mem_disk_file.o kmc_core/rev_byte.o kmc_core/bkb_writer.o kmc_core/cpu_info.o kmc_core/bkb_reader.o kmc_core/fastq_reader.o kmc_core/timer.o kmc_core/develop.o kmc_core/kb_completer.o kmc_core/kb_storer.o kmc_core/kmer.o kmc_core/splitter.o kmc_core/kb_collector.o kmc_core/kmc_runner.o kmc_core/raduls_sse2.o kmc_core/raduls_sse41.o kmc_core/raduls_avx2.o kmc_core/raduls_avx.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc kmc_CLI/kmc.o bin/libkmc_core.a -lz make[2]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-2jfcsjF2 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/kmc-3.2.4\+dfsg/debian/tmp dh_install install -m0755 -d debian/kmc/usr/bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc/usr/bin/ install -m0755 -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h debian/libkmc-dev/usr/include/kmc/ install -m0755 -d debian/libkmc-dev/usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./bin/libkmc_core.a ./libkmc.a debian/libkmc-dev/usr/lib/x86_64-linux-gnu/ dh_installdocs install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/TODO debian/kmc/usr/share/doc/kmc/TODO.Debian install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' mkdir -p /build/reproducible-path/kmc-3.2.4+dfsg/debian/man /build/reproducible-path/kmc-3.2.4+dfsg/debian/usage_to_man Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.adoc cp /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.? /build/reproducible-path/kmc-3.2.4+dfsg/debian/man dh_installman -- install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/reproducible-path/kmc-3.2.4+dfsg' cd '/build/reproducible-path/kmc-3.2.4+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -- debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug debian/kmc/usr/bin/kmc install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/kmc/usr/lib/debug install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym install -m0755 -d debian/.debhelper/kmc dh_makeshlibs -a rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump dh_installdeb install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " install -m0755 -d debian/kmc/DEBIAN echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-3), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=02f403fdaf100e8e2730719d187da0a2493c07ff 1d4f91c850cd0b23efecb939d95ce68aad54336e bf0f01bfd9f0b90538542a3de75c63ec70eaecef" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libkmc-dev/DEBIAN echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -cdebian/control -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.8.2-3), " dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_md5sums install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.2.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.4+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2298204 and its subdirectories I: Current time: Sun Sep 14 23:46:36 -12 2025 I: pbuilder-time-stamp: 1757936796 Mon Sep 15 11:46:38 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Mon Sep 15 11:46:38 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Mon Sep 15 11:46:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Sep 15 11:46:38 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Vv7ZkH' ==================================================================================== Sun Oct 18 18:09:38 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 kmc unstable /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB 3.2.4+dfsg-1" as arguments. Sun Oct 18 18:09:38 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-PpsWUEnO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 18:09:38 UTC 2026 I: Downloading source for unstable/kmc=3.2.4+dfsg-1 Reading package lists... NOTICE: 'kmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmc.git Please use: git clone https://salsa.debian.org/med-team/kmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 445 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (dsc) [2234 B] Get:2 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (tar) [409 kB] Get:3 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (diff) [33.9 kB] Fetched 445 kB in 0s (4736 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kmc' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmc.git Please use: git clone https://salsa.debian.org/med-team/kmc.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 445 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (dsc) [2234 B] Get:2 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (tar) [409 kB] Get:3 http://deb.debian.org/debian unstable/main kmc 3.2.4+dfsg-1 (diff) [33.9 kB] Fetched 445 kB in 0s (4736 kB/s) Download complete and in download only mode ============================================================================= Re-Building kmc in unstable on amd64 on infom02-amd64 now. Date: Sun Oct 18 18:09:39 UTC 2026 Date UTC: Sun Oct 18 18:09:39 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_rXNT + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' kmc = debian-installer -o kmc = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' kmc = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_rXNT --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2 --logfile b2/build.log kmc_3.2.4+dfsg-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 19 08:09:39 +14 2026 I: pbuilder-time-stamp: 1792346979 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmc_3.2.4+dfsg-1.dsc] I: copying [./kmc_3.2.4+dfsg.orig.tar.xz] I: copying [./kmc_3.2.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmc_3.2.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting kmc in kmc-3.2.4+dfsg dpkg-source: info: unpacking kmc_3.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking kmc_3.2.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-shared-libs dpkg-source: info: applying makefile.patch dpkg-source: info: applying 0005-Add-static-library-target-to-makefile.patch dpkg-source: info: applying disable-python-bindings.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying simde dpkg-source: info: applying support-mixed-march.patch dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 18:09 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=7b9e67e4325c4a7a9aa4bfd1a8e04aab LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1297240 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_rXNT --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2 --logfile b2/build.log kmc_3.2.4+dfsg-1.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, help2man, asciidoctor, d-shlibs, libsimde-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on asciidoctor; however: Package asciidoctor is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev; however: Package libsimde-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: asciidoctor{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbz2-dev{a} libdebhelper-perl{a} libelf1t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libruby{a} libruby3.3{a} libsimde-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} po-debconf{a} rake{a} ruby{a} ruby-asciidoctor{a} ruby-csv{a} ruby-did-you-mean{a} ruby-net-telnet{a} ruby-ruby2-keywords{a} ruby-rubygems{a} ruby-webrick{a} ruby-xmlrpc{a} ruby3.3{a} rubygems-integration{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl fonts-lato libarchive-cpio-perl libjs-jquery libltdl-dev libmail-sendmail-perl lynx ruby-sdbm wget zip 0 packages upgraded, 54 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 92.1 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.2-1 [1493 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 rubygems-integration all 1.19 [5488 B] Get: 15 http://deb.debian.org/debian unstable/main amd64 rake all 13.2.1-1 [65.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 ruby-csv all 3.3.4-1 [42.2 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 ruby-did-you-mean all 1.6.3-2 [20.9 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 ruby-net-telnet all 0.2.0-1 [13.1 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 ruby-ruby2-keywords all 0.0.5-1 [4300 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 ruby-webrick all 1.9.1-1 [59.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 ruby-xmlrpc all 0.3.3-2 [24.4 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libruby3.3 amd64 3.3.8-2 [6301 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 ruby3.3 amd64 3.3.8-2 [834 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libruby amd64 1:3.3+b1 [5440 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 ruby-rubygems all 3.6.7-2 [407 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 ruby amd64 1:3.3+b1 [6560 B] Get: 29 http://deb.debian.org/debian unstable/main amd64 ruby-asciidoctor all 2.0.23-1 [214 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 asciidoctor all 2.0.23-1 [88.7 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 43 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 22.7 MB in 3s (7497 kB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.2-1_amd64.deb ... Unpacking openssl (3.5.2-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package rubygems-integration. Preparing to unpack .../13-rubygems-integration_1.19_all.deb ... Unpacking rubygems-integration (1.19) ... Selecting previously unselected package rake. Preparing to unpack .../14-rake_13.2.1-1_all.deb ... 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Unpacking libsimde-dev (0.8.2-3) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../53-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up ruby-ruby2-keywords (0.0.5-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up ruby-net-telnet (0.2.0-1) ... Setting up ruby-csv (3.3.4-1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up autoconf (2.72-3.1) ... Setting up ruby-webrick (1.9.1-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up ruby-did-you-mean (1.6.3-2) ... Setting up openssl (3.5.2-1) ... Setting up ruby-xmlrpc (0.3.3-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (21) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up rubygems-integration (1.19) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Setting up rake (13.2.1-1) ... Setting up libruby3.3:amd64 (3.3.8-2) ... Setting up ruby-rubygems (3.6.7-2) ... Setting up ruby3.3 (3.3.8-2) ... Setting up libruby:amd64 (1:3.3+b1) ... Setting up ruby (1:3.3+b1) ... Setting up ruby-asciidoctor (2.0.23-1) ... Setting up asciidoctor (2.0.23-1) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: git: No such file or directory rm -f kmc_core/*.o rm -f kmc_api/*.o rm -f kmc_dump/*.o rm -f kmc_tools/*.o rm -f py_kmc_api/*.o rm -f py_kmc_api/*.so rm -rf bin rm -rf include rm -f libkmc.a make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars debian/files rm -fr -- debian/kmc/ debian/tmp/ debian/libkmc-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_build -- SIMD=1 make -j16 "INSTALL=install --strip-program=true" SIMD=1 make[2]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[2]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/mem_disk_file.cpp -o kmc_core/mem_disk_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/rev_byte.cpp -o kmc_core/rev_byte.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_writer.cpp -o kmc_core/bkb_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/cpu_info.cpp -o kmc_core/cpu_info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/bkb_reader.cpp -o kmc_core/bkb_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/fastq_reader.cpp -o kmc_core/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/timer.cpp -o kmc_core/timer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/develop.cpp -o kmc_core/develop.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_completer.cpp -o kmc_core/kb_completer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_storer.cpp -o kmc_core/kb_storer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmer.cpp -o kmc_core/kmer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/splitter.cpp -o kmc_core/splitter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse2 -c kmc_core/raduls_sse2.cpp -o kmc_core/raduls_sse2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o In file included from kmc_core/raduls_sse2.cpp:20: kmc_core/raduls_impl.h:769:2: warning: #warning "building raduls radix sort for sse2" [-Wcpp] 769 | #warning "building raduls radix sort for sse2" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o In file included from kmc_core/raduls_sse41.cpp:17: kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] 763 | #warning "building raduls radix sort for sse4.1" | ^~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o In file included from kmc_core/params.h:16, from kmc_core/bkb_writer.h:14, from kmc_core/bkb_writer.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_completer.h:14, from kmc_core/kb_completer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_completer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/bkb_reader.h:15, from kmc_core/bkb_reader.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/params.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_avx2.cpp:11: kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] 757 | #warning "building raduls radix sort for avx2" | ^~~~~~~ kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_CLI/kmc.cpp:6: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/develop.cpp:3: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/develop.h:4, from kmc_core/develop.cpp:2: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/fastq_reader.h:15, from kmc_core/fastq_reader.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/fastq_reader.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_storer.h:15, from kmc_core/kb_storer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_storer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kmc.h:15, from kmc_core/kmc_runner.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kmc.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/splitter.h:16, from kmc_core/splitter.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/splitter.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/raduls_avx.cpp:14: kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] 760 | #warning "building raduls radix sort for avx" | ^~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, from kmc_core/kb_collector.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, from kmc_core/kb_collector.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, from kmc_core/raduls_impl.h:19: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kff_writer.cpp -o kmc_core/kff_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/nc_utils.cpp -o kmc_dump/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o ranlib libkmc.a mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_tools/kmc_tools.cpp:613:9: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 613 | ~CApplication<1>() | ^ kmc_tools/kmc_tools.cpp:613:9: note: remove the '< >' kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': kmc_tools/kff_info_reader.cpp:35:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:40:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 40 | fread(marker, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:46:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 46 | fread(footer_size_str, 1, 12, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:55:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:68:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 68 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:77:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:90:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 90 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:93:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 93 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:97:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:100:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 100 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:106:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:112:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 112 | fread(tmp.data(), 1, sizeof(free_size), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:137:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:142:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 142 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:151:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 151 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:155:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 155 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:162:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 162 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:174:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 174 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:183:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 183 | fread(tmp.data(), 1, 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:208:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 208 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:215:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 215 | fread(tmp.data(), 1, sizeof(uint64_t), file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadRawSection()': kmc_tools/kff_info_reader.cpp:254:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 254 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadMinimizerSection()': kmc_tools/kff_info_reader.cpp:289:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 289 | fread(data_section.minimizer.data(), 1, minimizer_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp:291:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 291 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/kff_info_reader.cpp:1: In copy constructor 'CKFFVariables::CKFFVariables(const CKFFVariables&)', inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/new_allocator.h:191:4, inlined from 'static void std::allocator_traits >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/alloc_traits.h:674:17, inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {const CKFFVariables&}; _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/vector.tcc:586:26, inlined from 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = CKFFVariables; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_vector.h:1427:21, inlined from 'void CKFFInfoReader::ReadVariableSection()' at kmc_tools/kff_info_reader.cpp:233:34: kmc_tools/kff_info_reader.h:40:8: warning: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' may be used uninitialized [-Wmaybe-uninitialized] 40 | struct CKFFVariables | ^~~~~~~~~~~~~ kmc_tools/kff_info_reader.cpp: In member function 'void CKFFInfoReader::ReadVariableSection()': kmc_tools/kff_info_reader.cpp:210:23: note: '*(unsigned char*)((char*)§ion + offsetof(CKFFVariables, CKFFVariables::ordered))' was declared here 210 | CKFFVariables section; | ^~~~~~~ In file included from kmc_tools/db_reader_factory.h:8, from kmc_tools/expression_node.h:19, from kmc_tools/parser.h:14, from kmc_tools/kmc_tools.cpp:17: kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 8]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_tools/kmc_tools.cpp:16: kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 8]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 7]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 7]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 6]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 6]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 5]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 5]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 4]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 4]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 3]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 3]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kmc_core/params.h:17: kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 62 | fread(&kmc_version, sizeof(uint32), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 72 | fread(&header_offset, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 77 | fread(&sig_len, sizeof(uint32_t), 1, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 106 | fread(raw, 1, 4, file); | ~~~~~^~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 2]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 2]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 1]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In member function 'void CKmerCheck::get_lower_upper(uint64, CKmer&, uint64&, uint64&) [with unsigned int SIZE = 1]': kmc_tools/check_kmer.h:97:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 97 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:101:38: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 101 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:131:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 131 | fread(&prefix_array, sizeof(uint32), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:136:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 136 | fread(&lower, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h:137:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 137 | fread(&upper, sizeof(uint64), 1, prefix_file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:53:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 53 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ kmc_tools/check_kmer.h: In lambda function: kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_tools kmc_tools/kmer_file_header.o kmc_tools/kmc_tools.o kmc_tools/nc_utils.o kmc_tools/parameters_parser.o kmc_tools/parser.o kmc_tools/tokenizer.o kmc_tools/fastq_filter.o kmc_tools/fastq_reader.o kmc_tools/fastq_writer.o kmc_tools/percent_progress.o kmc_tools/kff_info_reader.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o -lz mkdir -p include cp kmc_core/kmc_runner.h include/kmc_runner.h mkdir -p bin ar rcs bin/libkmc_core.a kmc_core/mem_disk_file.o kmc_core/rev_byte.o kmc_core/bkb_writer.o kmc_core/cpu_info.o kmc_core/bkb_reader.o kmc_core/fastq_reader.o kmc_core/timer.o kmc_core/develop.o kmc_core/kb_completer.o kmc_core/kb_storer.o kmc_core/kmer.o kmc_core/splitter.o kmc_core/kb_collector.o kmc_core/kmc_runner.o kmc_core/raduls_sse2.o kmc_core/raduls_sse41.o kmc_core/raduls_avx2.o kmc_core/raduls_avx.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_core/kff_writer.o mkdir -p bin g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc kmc_CLI/kmc.o bin/libkmc_core.a -lz make[2]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_test rm -fr -- /tmp/dh-xdg-rundir-IqjcgWP8 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars rm -fr -- debian/.debhelper/generated/kmc/ debian/kmc/ debian/tmp/ debian/.debhelper/generated/libkmc-dev/ debian/libkmc-dev/ dh_auto_install install -m0755 -d /build/reproducible-path/kmc-3.2.4\+dfsg/debian/tmp dh_install install -m0755 -d debian/kmc/usr/bin cp --reflink=auto -a ./bin/kmc ./bin/kmc_dump ./bin/kmc_tools debian/kmc/usr/bin/ install -m0755 -d debian/libkmc-dev/usr/include/kmc cp --reflink=auto -a ./kmc_api/kmc_file.h ./kmc_api/kmer_api.h ./kmc_api/kmer_defs.h ./kmc_api/mmer.h debian/libkmc-dev/usr/include/kmc/ install -m0755 -d debian/libkmc-dev/usr/lib/x86_64-linux-gnu cp --reflink=auto -a ./bin/libkmc_core.a ./libkmc.a debian/libkmc-dev/usr/lib/x86_64-linux-gnu/ dh_installdocs install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/TODO debian/kmc/usr/share/doc/kmc/TODO.Debian install -p -m0644 debian/copyright debian/kmc/usr/share/doc/kmc/copyright install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' mkdir -p /build/reproducible-path/kmc-3.2.4+dfsg/debian/man /build/reproducible-path/kmc-3.2.4+dfsg/debian/usage_to_man Creating manpages Manpage creation complete Manpage creation complete asciidoctor -a docdate='' -b manpage /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.adoc cp /build/reproducible-path/kmc-3.2.4+dfsg/debian/man_src/*.? /build/reproducible-path/kmc-3.2.4+dfsg/debian/man dh_installman -- install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc.1 debian/kmc/usr/share/man/man1/kmc.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./man/kmc_dump.1 debian/kmc/usr/share/man/man1/kmc_dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-compact.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-complex.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-dump.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-filter.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-histogram.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-kmers_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-sort.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-union.1 mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/kmc cd debian/libkmc-dev chmod a-x usr/share/doc/libkmc-dev/changelog.Debian chmod a-x usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 gzip -9nf usr/share/doc/libkmc-dev/changelog.Debian gzip -9nf usr/share/doc/kmc/changelog.Debian usr/share/man/man1/kmc.1 usr/share/man/man1/kmc_dump.1 usr/share/man/man1/kmc_tools-compact.1 usr/share/man/man1/kmc_tools-complex.1 usr/share/man/man1/kmc_tools-counters_subtract.1 usr/share/man/man1/kmc_tools-dump.1 usr/share/man/man1/kmc_tools-filter.1 usr/share/man/man1/kmc_tools-histogram.1 usr/share/man/man1/kmc_tools-intersect.1 usr/share/man/man1/kmc_tools-kmers_subtract.1 usr/share/man/man1/kmc_tools-sort.1 usr/share/man/man1/kmc_tools-union.1 usr/share/man/man1/kmc_tools.1 cd '/build/reproducible-path/kmc-3.2.4+dfsg' cd '/build/reproducible-path/kmc-3.2.4+dfsg' dh_fixperms find debian/kmc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libkmc-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/kmc/usr/share/doc -type f -a -true -a ! -regex 'debian/kmc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libkmc-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libkmc-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/kmc/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libkmc-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/kmc/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/libkmc-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_dwz -a install -m0755 -d debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -mdebian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug -- debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug dh_strip -a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc_core.a install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug debian/kmc/usr/bin/kmc_tools install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug debian/kmc/usr/bin/kmc install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/kmc/usr/lib/debug install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/share/doc ln -s kmc debian/.debhelper/kmc/dbgsym-root/usr/share/doc/kmc-dbgsym install -m0755 -d debian/.debhelper/kmc dh_makeshlibs -a rm -f debian/kmc/DEBIAN/shlibs rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc dh_installdeb install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.8.2-3), " install -m0755 -d debian/kmc/DEBIAN echo misc:Depends= >> debian/kmc.substvars echo misc:Pre-Depends= >> debian/kmc.substvars install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/.debhelper/kmc/dbgsym-root "-Vsimde:Built-Using=simde (= 0.8.2-3), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=kmc-dbgsym "-DDepends=kmc (= \${binary:Version})" "-DDescription=debug symbols for kmc" "-DBuild-Ids=02f403fdaf100e8e2730719d187da0a2493c07ff 1d4f91c850cd0b23efecb939d95ce68aad54336e bf0f01bfd9f0b90538542a3de75c63ec70eaecef" -DSection=debug -UMulti-Arch -UReplaces -UBreaks install -m0755 -d debian/libkmc-dev/DEBIAN echo misc:Depends= >> debian/libkmc-dev.substvars echo misc:Pre-Depends= >> debian/libkmc-dev.substvars dpkg-gencontrol -plibkmc-dev -ldebian/changelog -Tdebian/libkmc-dev.substvars -cdebian/control -Pdebian/libkmc-dev "-Vsimde:Built-Using=simde (= 0.8.2-3), " dpkg-gencontrol: warning: Depends field of package libkmc-dev: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libkmc-dev/DEBIAN/control chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/control dpkg-gencontrol -pkmc -ldebian/changelog -Tdebian/kmc.substvars -cdebian/control -Pdebian/kmc "-Vsimde:Built-Using=simde (= 0.8.2-3), " chmod 0644 -- debian/kmc/DEBIAN/control make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_md5sums install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libkmc-dev .. dpkg-deb: building package 'kmc' in '../kmc_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.4+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1297240 and its subdirectories I: Current time: Mon Oct 19 08:13:38 +14 2026 I: pbuilder-time-stamp: 1792347218 + false + set +x Sun Oct 18 18:13:38 UTC 2026 I: Signing ./b2/kmc_3.2.4+dfsg-1_amd64.buildinfo as kmc_3.2.4+dfsg-1_amd64.buildinfo.asc Sun Oct 18 18:13:38 UTC 2026 I: Signed ./b2/kmc_3.2.4+dfsg-1_amd64.buildinfo as ./b2/kmc_3.2.4+dfsg-1_amd64.buildinfo.asc Sun Oct 18 18:13:38 UTC 2026 - build #2 for kmc/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 18:13:38 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-PpsWUEnO, removing. /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB: total 128 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 11:46 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 11:50 b2 -rw-rw-r-- 1 jenkins jenkins 2234 Feb 17 2024 kmc_3.2.4+dfsg-1.dsc -rw------- 1 jenkins jenkins 112960 Sep 15 11:46 rbuildlog.yHdDCVQ /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1: total 25176 -rw-r--r-- 1 jenkins jenkins 109336 Sep 15 11:46 build.log -rw-r--r-- 1 jenkins jenkins 23330628 Sep 15 11:46 kmc-dbgsym_3.2.4+dfsg-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 33888 Sep 15 11:46 kmc_3.2.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Sep 15 11:46 kmc_3.2.4+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 6205 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7087 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1655 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1026968 Sep 15 11:46 kmc_3.2.4+dfsg-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 1443 Sep 15 11:46 kmc_3.2.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 408640 Sep 15 11:46 kmc_3.2.4+dfsg.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 790496 Sep 15 11:46 libkmc-dev_3.2.4+dfsg-1_amd64.deb /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2: total 25136 -rw-rw-r-- 1 jenkins jenkins 111620 Sep 15 11:50 build.log -rw-r--r-- 1 jenkins jenkins 23330628 Sep 15 11:50 kmc-dbgsym_3.2.4+dfsg-1_amd64.deb -rw-r--r-- 1 jenkins jenkins 33888 Sep 15 11:50 kmc_3.2.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Sep 15 11:50 kmc_3.2.4+dfsg-1.dsc -rw-rw-r-- 1 jenkins jenkins 6199 Sep 15 11:50 kmc_3.2.4+dfsg-1_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7081 Sep 15 11:50 kmc_3.2.4+dfsg-1_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1655 Sep 15 11:50 kmc_3.2.4+dfsg-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1026968 Sep 15 11:50 kmc_3.2.4+dfsg-1_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1443 Sep 15 11:50 kmc_3.2.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 408640 Sep 15 11:50 kmc_3.2.4+dfsg.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 790496 Sep 15 11:50 libkmc-dev_3.2.4+dfsg-1_amd64.deb Mon Sep 15 11:50:39 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Mon Sep 15 11:50:39 UTC 2025 I: kmc_3.2.4+dfsg-1_amd64.changes: Format: 1.8 Date: Sat, 17 Feb 2024 15:01:25 +0100 Source: kmc Binary: kmc kmc-dbgsym libkmc-dev Architecture: amd64 Version: 3.2.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: kmc - count kmers in genomic sequences libkmc-dev - library to access KMC k-mer count files Changes: kmc (3.2.4+dfsg-1) unstable; urgency=medium . * New upstream version. Checksums-Sha1: d6ff468a8f411a9d2f5f14fffc963c90566a8b52 23330628 kmc-dbgsym_3.2.4+dfsg-1_amd64.deb 5065abbee6c3343232230b88d3fb3a48626be8a4 6205 kmc_3.2.4+dfsg-1_amd64.buildinfo fb575588141404a5f5b3de47c7c98cd17390b548 1026968 kmc_3.2.4+dfsg-1_amd64.deb 0404a3b594ed1bb30a37a6197811a19a700f831e 790496 libkmc-dev_3.2.4+dfsg-1_amd64.deb Checksums-Sha256: 6033ab62983850ef6e1982437cac5ee06f6e5eab2f305301d53444d0b74b8921 23330628 kmc-dbgsym_3.2.4+dfsg-1_amd64.deb 1f9f2f9568059d3ec5d90054b937beead8617bcc7a92379471c13ef41763d41c 6205 kmc_3.2.4+dfsg-1_amd64.buildinfo 92421852a45680ee6894dcd1824e4972ffef8e607807445fe1c80bc6d72055e5 1026968 kmc_3.2.4+dfsg-1_amd64.deb e350e0ba7d0467ff295a351abeb119e57c34a6cc187783ab415b74e759c92782 790496 libkmc-dev_3.2.4+dfsg-1_amd64.deb Files: 9184984662ff44f8e8f7a8d9cc933496 23330628 debug optional kmc-dbgsym_3.2.4+dfsg-1_amd64.deb 9738f4131926064b19a33c5e4d7374f4 6205 science optional kmc_3.2.4+dfsg-1_amd64.buildinfo f30c3ffb2a71d2703ac1b0d7d9fd0c65 1026968 science optional kmc_3.2.4+dfsg-1_amd64.deb 402d5d4816e4d1698ab8fbeef8848049 790496 libdevel optional libkmc-dev_3.2.4+dfsg-1_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kmc_3.2.4+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kmc_3.2.4+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/kmc_3.2.4+dfsg-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/kmc_3.2.4+dfsg-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/kmc_3.2.4+dfsg-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kmc_3.2.4+dfsg-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-15 11:46:37.398029178 +0000 +++ b2/build.log 2025-09-15 11:50:38.982335786 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 23:42:47 -12 2025 -I: pbuilder-time-stamp: 1757936567 +I: Current time: Mon Oct 19 08:09:39 +14 2026 +I: pbuilder-time-stamp: 1792346979 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying gcc-13.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 18:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4f2a446504d2420d8de6ddeb3515c8c1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2298204' - PS1='# ' - PS2='> ' + INVOCATION_ID=7b9e67e4325c4a7a9aa4bfd1a8e04aab + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1297240 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_nA4f --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1 --logfile b1/build.log kmc_3.2.4+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/pbuilderrc_rXNT --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2 --logfile b2/build.log kmc_3.2.4+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2298204/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -180,7 +212,7 @@ Get: 52 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsimde-dev all 0.8.2-3 [467 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 22.7 MB in 1s (32.6 MB/s) +Fetched 22.7 MB in 3s (7497 kB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -418,7 +450,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kmc-3.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmc_3.2.4+dfsg-1_source.changes dpkg-buildpackage: info: source package kmc dpkg-buildpackage: info: source version 3.2.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -428,7 +464,7 @@ debian/rules clean dh clean dh_auto_clean - make -j12 clean + make -j16 clean make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: git: No such file or directory rm -f kmc_core/*.o @@ -462,7 +498,7 @@ debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_build -- SIMD=1 - make -j12 "INSTALL=install --strip-program=true" SIMD=1 + make -j16 "INSTALL=install --strip-program=true" SIMD=1 make[2]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[2]: git: No such file or directory g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_CLI/kmc.cpp -o kmc_CLI/kmc.o @@ -481,22 +517,21 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kb_collector.cpp -o kmc_core/kb_collector.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_core/kmc_runner.cpp -o kmc_core/kmc_runner.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse2 -c kmc_core/raduls_sse2.cpp -o kmc_core/raduls_sse2.o -kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': -kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/15/algorithm:63, - from kmc_CLI/kmc.cpp:6: -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o In file included from kmc_core/raduls_sse2.cpp:20: kmc_core/raduls_impl.h:769:2: warning: #warning "building raduls radix sort for sse2" [-Wcpp] 769 | #warning "building raduls radix sort for sse2" | ^~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o +In file included from kmc_core/raduls_sse41.cpp:17: +kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] + 763 | #warning "building raduls radix sort for sse4.1" + | ^~~~~~~ +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o In file included from kmc_core/params.h:16, - from kmc_core/bkb_reader.h:15, - from kmc_core/bkb_reader.cpp:11: + from kmc_core/bkb_writer.h:14, + from kmc_core/bkb_writer.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -509,21 +544,20 @@ 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/bkb_writer.h:14, - from kmc_core/bkb_writer.cpp:11: + from kmc_core/kb_completer.h:14, + from kmc_core/kb_completer.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, - from /usr/include/c++/15/ext/algorithm:65, - from kmc_core/defs.h:112, - from kmc_core/params.h:14: + from kmc_core/kb_completer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/develop.cpp:3: + from kmc_core/bkb_reader.h:15, + from kmc_core/bkb_reader.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -531,20 +565,34 @@ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, - from kmc_core/develop.h:4, - from kmc_core/develop.cpp:2: + from kmc_core/params.h:14: +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +In file included from kmc_core/raduls_avx2.cpp:11: +kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] + 757 | #warning "building raduls radix sort for avx2" + | ^~~~~~~ +kmc_CLI/kmc.cpp: In function 'bool parse_parameters(int, char**, Params&)': +kmc_CLI/kmc.cpp:267:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<__cxx11::basic_string*, vector<__cxx11::basic_string > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 267 | std::random_shuffle(input_file_names.begin(), input_file_names.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/15/algorithm:63, + from kmc_CLI/kmc.cpp:6: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/kb_completer.h:14, - from kmc_core/kb_completer.cpp:12: + from kmc_core/develop.cpp:3: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, - from kmc_core/kb_completer.cpp:10: + from /usr/include/c++/15/ext/algorithm:65, + from kmc_core/defs.h:112, + from kmc_core/develop.h:4, + from kmc_core/develop.cpp:2: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ @@ -555,6 +603,11 @@ kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/15/algorithm:63, + from kmc_core/fastq_reader.cpp:10: +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_storer.h:15, from kmc_core/kb_storer.cpp:12: @@ -563,19 +616,13 @@ 593 | random_shuffle(random_bins.begin(), random_bins.end()); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/algorithm:63, - from kmc_core/fastq_reader.cpp:10: -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -In file included from /usr/include/c++/15/algorithm:63, from kmc_core/kb_storer.cpp:10: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/kb_collector.h:15, - from kmc_core/splitter.h:16, - from kmc_core/splitter.cpp:11: + from kmc_core/kmc.h:15, + from kmc_core/kmc_runner.cpp:12: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -583,13 +630,14 @@ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, - from kmc_core/splitter.h:14: + from kmc_core/kmc.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ In file included from kmc_core/params.h:16, from kmc_core/kb_collector.h:15, - from kmc_core/kb_collector.cpp:11: + from kmc_core/splitter.h:16, + from kmc_core/splitter.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -597,11 +645,10 @@ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, - from kmc_core/kb_collector.h:14: + from kmc_core/splitter.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -msse4.1 -c kmc_core/raduls_sse41.cpp -o kmc_core/raduls_sse41.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': @@ -613,9 +660,13 @@ /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ +In file included from kmc_core/raduls_avx.cpp:14: +kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] + 760 | #warning "building raduls radix sort for avx" + | ^~~~~~~ In file included from kmc_core/params.h:16, - from kmc_core/kmc.h:15, - from kmc_core/kmc_runner.cpp:12: + from kmc_core/kb_collector.h:15, + from kmc_core/kb_collector.cpp:11: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': kmc_core/queues.h:593:31: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 593 | random_shuffle(random_bins.begin(), random_bins.end()); @@ -623,15 +674,10 @@ In file included from /usr/include/c++/15/algorithm:63, from /usr/include/c++/15/ext/algorithm:65, from kmc_core/defs.h:112, - from kmc_core/kmc.h:14: + from kmc_core/kb_collector.h:14: /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -In file included from kmc_core/raduls_sse41.cpp:17: -kmc_core/raduls_impl.h:763:2: warning: #warning "building raduls radix sort for sse4.1" [-Wcpp] - 763 | #warning "building raduls radix sort for sse4.1" - | ^~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx2 -c kmc_core/raduls_avx2.cpp -o kmc_core/raduls_avx2.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': @@ -643,11 +689,8 @@ /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -In file included from kmc_core/raduls_avx2.cpp:11: -kmc_core/raduls_impl.h:757:2: warning: #warning "building raduls radix sort for avx2" [-Wcpp] - 757 | #warning "building raduls radix sort for avx2" - | ^~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -mavx -c kmc_core/raduls_avx.cpp -o kmc_core/raduls_avx.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': @@ -659,13 +702,6 @@ /usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/mmer.cpp -o kmc_api/mmer.o -In file included from kmc_core/raduls_avx.cpp:14: -kmc_core/raduls_impl.h:760:2: warning: #warning "building raduls radix sort for avx" [-Wcpp] - 760 | #warning "building raduls radix sort for avx" - | ^~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmc_file.cpp -o kmc_api/kmc_file.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_api/kmer_api.cpp -o kmc_api/kmer_api.o In file included from kmc_core/first_dispatch.h:13, from kmc_core/raduls_impl.h:24: kmc_core/queues.h: In member function 'void CBinDesc::init_random()': @@ -682,6 +718,9 @@ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_dump/kmc_dump.cpp -o kmc_dump/kmc_dump.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmer_file_header.cpp -o kmc_tools/kmer_file_header.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kmc_tools.cpp -o kmc_tools/kmc_tools.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o kmc_tools/kmer_file_header.cpp: In member function 'bool CKmerFileHeader::is_kff_file(std::string&)': kmc_tools/kmer_file_header.cpp:117:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 117 | fread(marker_start, 1, 3, file); @@ -689,19 +728,20 @@ kmc_tools/kmer_file_header.cpp:120:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 120 | fread(marker_end, 1, 3, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/nc_utils.cpp -o kmc_tools/nc_utils.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parameters_parser.cpp -o kmc_tools/parameters_parser.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/parser.cpp -o kmc_tools/parser.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/tokenizer.cpp -o kmc_tools/tokenizer.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_filter.cpp -o kmc_tools/fastq_filter.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_reader.cpp -o kmc_tools/fastq_reader.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/fastq_writer.cpp -o kmc_tools/fastq_writer.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o +ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o +ranlib libkmc.a +mkdir -p bin +g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o kmc_tools/kmc_tools.cpp:613:9: warning: template-id not allowed for destructor in C++20 [-Wtemplate-id-cdtor] 613 | ~CApplication<1>() | ^ kmc_tools/kmc_tools.cpp:613:9: note: remove the '< >' -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/percent_progress.cpp -o kmc_tools/percent_progress.o -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -c kmc_tools/kff_info_reader.cpp -o kmc_tools/kff_info_reader.o kmc_tools/kff_info_reader.cpp: In constructor 'CKFFInfoReader::CKFFInfoReader(const std::string&)': kmc_tools/kff_info_reader.cpp:35:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 35 | fread(marker, 1, 3, file); @@ -784,10 +824,6 @@ kmc_tools/kff_info_reader.cpp:291:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 291 | fread(tmp.data(), 1, 8, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -ar rcs libkmc.a kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o -ranlib libkmc.a -mkdir -p bin -g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/kmc-3.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -fsigned-char -std=c++14 -Wl,-z,relro -Wl,-z,now -lm -O3 -std=c++14 -lz -o bin/kmc_dump kmc_dump/nc_utils.o kmc_dump/kmc_dump.o kmc_api/mmer.o kmc_api/kmc_file.o kmc_api/kmer_api.o In file included from kmc_tools/kff_info_reader.cpp:1: In copy constructor 'CKFFVariables::CKFFVariables(const CKFFVariables&)', inlined from 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = CKFFVariables; _Args = {const CKFFVariables&}; _Tp = CKFFVariables]' at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -975,6 +1011,23 @@ kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from kmc_core/params.h:17: +kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': +kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 62 | fread(&kmc_version, sizeof(uint32), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 72 | fread(&header_offset, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 77 | fread(&sig_len, sizeof(uint32_t), 1, file); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 106 | fread(raw, 1, 4, file); + | ~~~~~^~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 2]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); @@ -1003,23 +1056,6 @@ kmc_tools/check_kmer.h:273:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 273 | fread(tmp, 1, record_size, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from kmc_core/params.h:17: -kmc_core/s_mapper.h: In member function 'void CSignatureMapper::InitKMC(const std::string&)': -kmc_core/s_mapper.h:62:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 62 | fread(&kmc_version, sizeof(uint32), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:72:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 72 | fread(&header_offset, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:76:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 76 | fread(&lut_prefix_len, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:77:22: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 77 | fread(&sig_len, sizeof(uint32_t), 1, file); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -kmc_core/s_mapper.h:106:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 106 | fread(raw, 1, 4, file); - | ~~~~~^~~~~~~~~~~~~~~~~ kmc_tools/kff_db_reader.h: In member function 'bool CKFFDbReaderSeq::reload_buff() [with unsigned int SIZE = 1]': kmc_tools/kff_db_reader.h:1377:30: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1377 | fread(buff, 1, buff_bytes, file); @@ -1059,7 +1095,7 @@ make[2]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_auto_test - rm -fr -- /tmp/dh-xdg-rundir-2jfcsjF2 + rm -fr -- /tmp/dh-xdg-rundir-IqjcgWP8 create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/kmc.substvars debian/libkmc-dev.substvars @@ -1080,10 +1116,10 @@ install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev install -p -m0644 debian/copyright debian/libkmc-dev/usr/share/doc/libkmc-dev/copyright dh_installchangelogs - install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev - install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian install -m0755 -d debian/kmc/usr/share/doc/kmc install -p -m0644 debian/.debhelper/generated/kmc/dh_installchangelogs.dch.trimmed debian/kmc/usr/share/doc/kmc/changelog.Debian + install -m0755 -d debian/libkmc-dev/usr/share/doc/libkmc-dev + install -p -m0644 debian/.debhelper/generated/libkmc-dev/dh_installchangelogs.dch.trimmed debian/libkmc-dev/usr/share/doc/libkmc-dev/changelog.Debian rm -f debian/kmc.debhelper.log debian/libkmc-dev.debhelper.log debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/kmc-3.2.4+dfsg' @@ -1121,33 +1157,45 @@ install -p -m0644 ./debian/man/kmc_tools-union.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 install -m0755 -d debian/kmc/usr/share/man/man1/ install -p -m0644 ./debian/man/kmc_tools.1 debian/kmc/usr/share/man/man1/kmc_tools.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 man-recode --to-code UTF-8 --suffix .dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 - mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 - mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 debian/kmc/usr/share/man/man1/kmc_dump.1 mv debian/kmc/usr/share/man/man1/kmc_tools-compact.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-compact.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 mv debian/kmc/usr/share/man/man1/kmc_tools-complex.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-compact.1 debian/kmc/usr/share/man/man1/kmc_tools-complex.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 debian/kmc/usr/share/man/man1/kmc_tools-union.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-complex.1 + mv debian/kmc/usr/share/man/man1/kmc.1.dh-new debian/kmc/usr/share/man/man1/kmc.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc.1 + mv debian/kmc/usr/share/man/man1/kmc_dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_dump.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-filter.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-filter.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-kmers_subtract.1 mv debian/kmc/usr/share/man/man1/kmc_tools-histogram.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-filter.1 debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 - mv debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-histogram.1 + mv debian/kmc/usr/share/man/man1/kmc_tools.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools.1 mv debian/kmc/usr/share/man/man1/kmc_tools-dump.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-dump.1 - chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-counters_subtract.1 debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-dump.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-union.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-union.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-union.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-sort.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-sort.1 + mv debian/kmc/usr/share/man/man1/kmc_tools-intersect.1.dh-new debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 + chmod 0644 -- debian/kmc/usr/share/man/man1/kmc_tools-intersect.1 make[1]: Leaving directory '/build/reproducible-path/kmc-3.2.4+dfsg' dh_perl dh_link @@ -1181,10 +1229,15 @@ objcopy --compress-debug-sections debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug chmod 0644 -- debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu/kmc.debug dh_strip -a - strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc_core.a + install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d + objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug + chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug + strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump + objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02 objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_tools debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug + strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/libkmc-dev/usr/lib/x86_64-linux-gnu/libkmc.a chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_tools objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/02/f403fdaf100e8e2730719d187da0a2493c07ff.debug debian/kmc/usr/bin/kmc_tools @@ -1193,11 +1246,6 @@ chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/bf/0f01bfd9f0b90538542a3de75c63ec70eaecef.debug debian/kmc/usr/bin/kmc - install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d - objcopy --only-keep-debug --compress-debug-sections debian/kmc/usr/bin/kmc_dump debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug - chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug - strip --remove-section=.comment --remove-section=.note debian/kmc/usr/bin/kmc_dump - objcopy --add-gnu-debuglink debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.build-id/1d/4f91c850cd0b23efecb939d95ce68aad54336e.debug debian/kmc/usr/bin/kmc_dump install -m0755 -d debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/kmc/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/kmc/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/kmc/usr/lib/debug/.dwz @@ -1210,7 +1258,7 @@ rm -f debian/libkmc-dev/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/kmc/DEBIAN - dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc debian/kmc/usr/bin/kmc_dump + dpkg-shlibdeps -Tdebian/kmc.substvars debian/kmc/usr/bin/kmc_dump debian/kmc/usr/bin/kmc_tools debian/kmc/usr/bin/kmc dh_installdeb install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN @@ -1236,20 +1284,20 @@ dh_md5sums install -m0755 -d debian/kmc/DEBIAN install -m0755 -d debian/libkmc-dev/DEBIAN - cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/kmc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + cd debian/libkmc-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums + chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/kmc/DEBIAN/md5sums install -m0755 -d debian/.debhelper/kmc/dbgsym-root/DEBIAN cd debian/.debhelper/kmc/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums - chmod 0644 -- debian/libkmc-dev/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/kmc/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/kmc .. dpkg-deb --root-owner-group --build debian/.debhelper/kmc/dbgsym-root .. dpkg-deb --root-owner-group --build debian/libkmc-dev .. -dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_amd64.deb'. -dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'kmc' in '../kmc_3.2.4+dfsg-1_amd64.deb'. +dpkg-deb: building package 'kmc-dbgsym' in '../kmc-dbgsym_3.2.4+dfsg-1_amd64.deb'. +dpkg-deb: building package 'libkmc-dev' in '../libkmc-dev_3.2.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../kmc_3.2.4+dfsg-1_amd64.buildinfo dpkg-genchanges --build=binary -O../kmc_3.2.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1257,12 +1305,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1297240/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2298204 and its subdirectories -I: Current time: Sun Sep 14 23:46:36 -12 2025 -I: pbuilder-time-stamp: 1757936796 +I: removing directory /srv/workspace/pbuilder/1297240 and its subdirectories +I: Current time: Mon Oct 19 08:13:38 +14 2026 +I: pbuilder-time-stamp: 1792347218 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kmc_3.2.4+dfsg-1.diff: 86.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/kmc_3.2.4+dfsg-1.diff.gz b2/build.log: 88.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 88.6% -- replaced with stdout Mon Sep 15 11:50:40 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_kmc_unstable_amd64_1757937040 + touch /var/log/reproducible-builds/diffoscope_stamp_kmc_unstable_amd64_1757937040 + RESULT=0 + systemd-run '--description=diffoscope on kmc/3.2.4+dfsg-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_33-81248 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB --run-session -c jenkins-reproducible-unstable-diffoscope-f006f830-dd16-41eb-8684-6b3c7aa3cb17 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/dbd-tmp-rYIzegU ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1/kmc_3.2.4+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2/kmc_3.2.4+dfsg-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_33-81248.service; invocation ID: 85ac201ed4e142e8b49e862da4639f76 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/kmc_3.2.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b1/kmc_3.2.4+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.2QE4jMfB/b2/kmc_3.2.4+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 222ms CPU time consumed: 174ms Memory peak: 17.3M (swap: 0B) _ | | ___ __ ___ ___ | |/ / '_ ` _ \ / __| | <| | | | | | (__ |_|\_\_| |_| |_|\___| Mon Sep 15 11:50:40 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Mon Sep 15 11:50:40 UTC 2025 I: kmc from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-15 11:50:41] INFO: Starting at 2025-09-15 11:50:41.205293 [2025-09-15 11:50:41] INFO: Generating the pages of 1 package(s) [2025-09-15 11:50:41] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/kmc didn't produce a buildlog, even though it has been built. [2025-09-15 11:50:41] INFO: Finished at 2025-09-15 11:50:41.492455, took: 0:00:00.287165 Mon Sep 15 11:50:41 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/kmc.html Mon Sep 15 11:50:41 UTC 2025 I: Removing signed kmc_3.2.4+dfsg-1_amd64.buildinfo.asc files: removed './b1/kmc_3.2.4+dfsg-1_amd64.buildinfo.asc' removed './b2/kmc_3.2.4+dfsg-1_amd64.buildinfo.asc' 1757937041 amd64 unstable kmc Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kmc_3.2.4+dfsg-1.rbuild.log: 86.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/kmc_3.2.4+dfsg-1.rbuild.log.gz [2025-09-15 11:50:41] INFO: Starting at 2025-09-15 11:50:41.822721 [2025-09-15 11:50:41] INFO: Generating the pages of 1 package(s) [2025-09-15 11:50:42] INFO: Finished at 2025-09-15 11:50:42.095523, took: 0:00:00.272806 All cleanup done. Mon Sep 15 11:50:42 UTC 2025 - total duration: 0h 8m 18s. Mon Sep 15 11:50:42 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-tmULtcGU, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 8min 19.424s CPU time consumed: 3.541s Memory peak: 90.3M (swap: 0B)