Running as unit: rb-build-amd64_33-81570.service; invocation ID: 7ae4e0e6a2a946018b34bf9481ef8e8a ==================================================================================== Wed Sep 17 21:30:39 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_33) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Wed Sep 17 21:30:39 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-yX6OgdXi" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 17 21:30:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Wed Sep 17 21:30:39 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-WiQ7WZ' Wed Sep 17 21:30:39 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Wed Sep 17 21:30:39 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-lZIPV0' ok, let's check if libfastahack is building anywhere yet… ok, libfastahack is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libfastahack in forky on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Wed Sep 17 21:30:57 UTC 2025 I: starting to build libfastahack/forky/amd64 on jenkins on '2025-09-17 21:30' Wed Sep 17 21:30:57 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/81570/console.log 1758144657 amd64 forky libfastahack Wed Sep 17 21:30:57 UTC 2025 I: Downloading source for forky/libfastahack=1.0.0+dfsg-11 --2025-09-17 21:30:57-- http://deb.debian.org/debian/pool/main/libf/libfastahack/libfastahack_1.0.0%2bdfsg-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2357 (2.3K) [text/prs.lines.tag] Saving to: ‘libfastahack_1.0.0+dfsg-11.dsc’ 0K .. 100% 258M=0s 2025-09-17 21:30:57 (258 MB/s) - ‘libfastahack_1.0.0+dfsg-11.dsc’ saved [2357/2357] --2025-09-17 21:30:57-- http://deb.debian.org/debian/pool/main/libf/libfastahack/libfastahack_1.0.0%2bdfsg-11.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2357 (2.3K) [text/prs.lines.tag] Saving to: ‘libfastahack_1.0.0+dfsg-11.dsc’ 0K .. 100% 258M=0s 2025-09-17 21:30:57 (258 MB/s) - ‘libfastahack_1.0.0+dfsg-11.dsc’ saved [2357/2357] Wed Sep 17 21:30:57 UTC 2025 I: libfastahack_1.0.0+dfsg-11.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libfastahack Binary: libfastahack0, libfastahack-dev, fastahack Architecture: any Version: 1.0.0+dfsg-11 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/ekg/fastahack Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/libfastahack Vcs-Git: https://salsa.debian.org/med-team/libfastahack.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man Package-List: fastahack deb science optional arch=any libfastahack-dev deb libdevel optional arch=any libfastahack0 deb libs optional arch=any Checksums-Sha1: 3e89fea6a55b5a312a980d1d493a77f64dfb5d9a 9088 libfastahack_1.0.0+dfsg.orig.tar.xz 5d1fe0d92795b53d0164a877bfdf0b2acc5f5bf3 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Checksums-Sha256: 41e512b34158564ae83355a1e11a5ae366f3ca9ac4a31ef80f3f26f3438a91af 9088 libfastahack_1.0.0+dfsg.orig.tar.xz aec68f5790fe2b9b7ac7557b1182987bf1a3a61b9f24bba99d6f7a5a5270ce23 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Files: ef74d8e313b8f84e6454baa07b9a0026 9088 libfastahack_1.0.0+dfsg.orig.tar.xz bca7f6fe5e00c467fba6f584598a006f 7624 libfastahack_1.0.0+dfsg-11.debian.tar.xz Dgit: b4338c5619bc20a2328953e66c5a1610a31491b0 debian archive/debian/1.0.0+dfsg-11 https://git.dgit.debian.org/libfastahack -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmVvSfMUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrqChAAp5p5VWNXF8eBMCWjPVlBMiU+GWC0 +NLK7yZz0JG5CDtP9x8wjl5yl3jS4MB8cG12f4JwKgv/1FOHhge0bBvstKFBxqSv 7R3eLJjQLNSoPj9b8DkqLEfQ8OXq7BEJvfWl1BTNICtBjp9uJPHL8hAsWU4aYk4y aBc/DeNgzjvA7YP+87X8CWCqKZhYtAXviUlxDh6ILAZQ7cnI2aNKRhHGvjN9zUj0 ps64dmsYAsAnFCwnK3ArQ+igz+F89HwCq8RPw/Rpf3FyOUvf0Sa+PPgfR3cXgQFb z+ZDYY16+P3aL8oHRNLd+Xv40g59owgWq68MS0ROPH36C6BZALX/825vuS5YVYkw yisLK+gvkBNA60kMWHosDOI7Bh3BE7qaN3SwmZSiBtyZ1HutZXK1BpK05+LWU5XJ Beuw8hKUeNTbPJa5X9yyN0e9A42HRvBZ49PAEpfwOB73Zi8CvucFn5pOAPwHLcQH hXRyDDleN/NUrzKkO6fXO9pSq4oCgt0JLjh83YxBjg51jvMlnLfr3Dog+D7A3CcS LipkEatvgFR3zSnyynjEswiDf/zFUB8xHNsX6ici2AYJZzs1wh8k7vA8qZBGqyUh HZObOTiQ417b7QWPM/AvNLjYDV0Dxj9E3XTrgd7kHDRumKY+S+X/k92PcD792KFn RrYlLaVIBYZhb/M= =/Hub -----END PGP SIGNATURE----- Wed Sep 17 21:30:57 UTC 2025 I: Checking whether the package is not for us Wed Sep 17 21:30:57 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Wed Sep 17 21:30:57 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Wed Sep 17 21:30:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Wed Sep 17 21:30:57 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YtNrL3' ==================================================================================== Wed Sep 17 21:30:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 libfastahack forky /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv 1.0.0+dfsg-11" as arguments. Wed Sep 17 21:30:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-lZzr1faO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 17 21:30:58 UTC 2025 I: Downloading source for forky/libfastahack=1.0.0+dfsg-11 Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (131 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (131 kB/s) Download complete and in download only mode ============================================================================= Building libfastahack in forky on amd64 on infom01-amd64 now. Date: Wed Sep 17 21:30:58 UTC 2025 Date UTC: Wed Sep 17 21:30:58 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 09:30:59 -12 2025 I: pbuilder-time-stamp: 1758144659 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3309038/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c7f9c45008444ac8946cee7ba359c36a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3309038' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_qjDG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3309038/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After unpacking 43.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get: 34 http://deb.debian.org/debian forky/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Fetched 11.5 MB in 2s (7252 kB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 18474: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbols2DRX19 2025-09-17 21:33:01.984086863 +0000 @@ -32,28 +32,36 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg - (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg - (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.0.0+dfsg - (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvT_S9_@Base 1.0.0+dfsg + _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 1.0.0+dfsg-11 + _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.0.0+dfsg-11 + _ZNSt19_UninitDestroyGuardIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEvED1Ev@Base 1.0.0+dfsg-11 + _ZNSt19_UninitDestroyGuardIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEvED2Ev@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED1Ev@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE15FastaIndexEntryED2Ev@Base 1.0.0+dfsg + _ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_appendIJRKS0_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.0.0+dfsg-11 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructILb1EEEvPKcm@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 1.0.0+dfsg - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg - (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg (optional)_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3309038 and its subdirectories I: Current time: Wed Sep 17 09:33:06 -12 2025 I: pbuilder-time-stamp: 1758144786 Wed Sep 17 21:33:06 UTC 2025 I: Signing ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Sep 17 21:33:06 UTC 2025 I: Signed ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Sep 17 21:33:06 UTC 2025 - build #1 for libfastahack/forky/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Wed Sep 17 21:33:06 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-lZzr1faO, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:33 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:30 b2 -rw-rw-r-- 1 jenkins jenkins 2357 Dec 5 2023 libfastahack_1.0.0+dfsg-11.dsc -rw------- 1 jenkins jenkins 3523 Sep 17 21:30 rbuildlog.Qdsoy6T /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1: total 468 -rw-r--r-- 1 jenkins jenkins 45702 Sep 17 21:33 build.log -rw-r--r-- 1 jenkins jenkins 76788 Sep 17 21:33 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 12572 Sep 17 21:33 fastahack_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 27588 Sep 17 21:33 libfastahack-dev_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 238156 Sep 17 21:33 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 26124 Sep 17 21:33 libfastahack0_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 7624 Sep 17 21:33 libfastahack_1.0.0+dfsg-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2357 Sep 17 21:33 libfastahack_1.0.0+dfsg-11.dsc -rw-r--r-- 1 jenkins jenkins 6398 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7280 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3021 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1762 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b2: total 0 Wed Sep 17 21:33:06 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 09:30:59 -12 2025 I: pbuilder-time-stamp: 1758144659 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3309038/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c7f9c45008444ac8946cee7ba359c36a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3309038' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_qjDG --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3309038/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After unpacking 43.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get: 34 http://deb.debian.org/debian forky/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Fetched 11.5 MB in 2s (7252 kB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../16-d-shlibs_0.109_all.deb ... Unpacking d-shlibs (0.109) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../25-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../26-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. 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Preparing to unpack .../33-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 18474: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbols2DRX19 2025-09-17 21:33:01.984086863 +0000 @@ -32,28 +32,36 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - 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_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_appendIJRKS0_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.0.0+dfsg-11 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# 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(optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 1.0.0+dfsg - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg - (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg (optional)_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3309038 and its subdirectories I: Current time: Wed Sep 17 09:33:06 -12 2025 I: pbuilder-time-stamp: 1758144786 Wed Sep 17 21:33:07 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Wed Sep 17 21:33:07 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Wed Sep 17 21:33:07 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Wed Sep 17 21:33:07 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-XMXAB3' ==================================================================================== Wed Oct 21 03:56:07 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 libfastahack forky /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv 1.0.0+dfsg-11" as arguments. Wed Oct 21 03:56:07 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-GiEW3NHn" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Oct 21 03:56:07 UTC 2026 I: Downloading source for forky/libfastahack=1.0.0+dfsg-11 Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (191 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (191 kB/s) Download complete and in download only mode ============================================================================= Re-Building libfastahack in forky on amd64 on infom02-amd64 now. Date: Wed Oct 21 03:56:08 UTC 2026 Date UTC: Wed Oct 21 03:56:08 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_clIf + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libfastahack = debian-installer -o libfastahack = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libfastahack = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_clIf --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b2 --logfile b2/build.log libfastahack_1.0.0+dfsg-11.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 17:56:08 +14 2026 I: pbuilder-time-stamp: 1792554968 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 21 03:56 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a2f50e0ed3fb488faf73947408378b62 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2612471 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_clIf --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b2 --logfile b2/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After unpacking 43.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get: 34 http://deb.debian.org/debian forky/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Fetched 11.5 MB in 1s (20.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. 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Preparing to unpack .../33-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '2222' is supported by ustar format... yes checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 18474: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j16 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/sh ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/sh ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/sh ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/sh ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbolsAdRn1N 2026-10-21 03:57:31.672850035 +0000 @@ -32,28 +32,36 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - 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0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg - (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg (optional)_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2612471/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2612471 and its subdirectories I: Current time: Wed Oct 21 17:57:36 +14 2026 I: pbuilder-time-stamp: 1792555056 + false + set +x Wed Oct 21 03:57:36 UTC 2026 I: Signing ./b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Oct 21 03:57:36 UTC 2026 I: Signed ./b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as ./b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Oct 21 03:57:36 UTC 2026 - build #2 for libfastahack/forky/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Wed Oct 21 03:57:36 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-GiEW3NHn, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv: total 68 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:33 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:34 b2 -rw-rw-r-- 1 jenkins jenkins 2357 Dec 5 2023 libfastahack_1.0.0+dfsg-11.dsc -rw------- 1 jenkins jenkins 49514 Sep 17 21:33 rbuildlog.Qdsoy6T /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1: total 476 -rw-r--r-- 1 jenkins jenkins 45702 Sep 17 21:33 build.log -rw-r--r-- 1 jenkins jenkins 76788 Sep 17 21:33 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 12572 Sep 17 21:33 fastahack_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 27588 Sep 17 21:33 libfastahack-dev_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 238156 Sep 17 21:33 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 26124 Sep 17 21:33 libfastahack0_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 7624 Sep 17 21:33 libfastahack_1.0.0+dfsg-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2357 Sep 17 21:33 libfastahack_1.0.0+dfsg-11.dsc -rw-r--r-- 1 jenkins jenkins 6398 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7280 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3021 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1762 Sep 17 21:33 libfastahack_1.0.0+dfsg-11_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b2: total 472 -rw-rw-r-- 1 jenkins jenkins 47475 Sep 17 21:34 build.log -rw-r--r-- 1 jenkins jenkins 76808 Sep 17 21:34 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 12896 Sep 17 21:34 fastahack_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 29312 Sep 17 21:34 libfastahack-dev_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 238168 Sep 17 21:34 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 27732 Sep 17 21:34 libfastahack0_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 7624 Sep 17 21:34 libfastahack_1.0.0+dfsg-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2357 Sep 17 21:34 libfastahack_1.0.0+dfsg-11.dsc -rw-rw-r-- 1 jenkins jenkins 6392 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7274 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 3021 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1762 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_source.changes Wed Sep 17 21:34:36 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Wed Sep 17 21:34:37 UTC 2025 I: libfastahack_1.0.0+dfsg-11_amd64.changes: Format: 1.8 Date: Tue, 05 Dec 2023 16:59:42 +0100 Source: libfastahack Binary: fastahack fastahack-dbgsym libfastahack-dev libfastahack0 libfastahack0-dbgsym Architecture: amd64 Version: 1.0.0+dfsg-11 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: fastahack - utility for indexing and sequence extraction from FASTA files libfastahack-dev - library for indexing and sequence extraction from FASTA files (de libfastahack0 - library for indexing and sequence extraction from FASTA files (li Closes: 1015486 Changes: libfastahack (1.0.0+dfsg-11) unstable; urgency=medium . * d/libfastahack0.symbols: mark optional symbols. The compiler is leaking a certain number of functions to the library's symbols table. They are variable depending on compiler version, and build options such as link time optimization tend to clean them up, but in both cases this tends to interfere with the existing list. (Closes: #1015486) * autoconf.patch: mark forwarding unneeded. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: fe633b1febbd9d59d6ab41373dc0405271167959 76788 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb 5ca98995610db007262f7da587de0030a03c8e30 12572 fastahack_1.0.0+dfsg-11_amd64.deb be55eb755aea1385b1f6ed538f20bf4f929e9eca 27588 libfastahack-dev_1.0.0+dfsg-11_amd64.deb d3ea6e93f5b49f037e16a879f5ac8df1558f7647 238156 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb 53db7a9a29eaf88a78be0311e2d74b61b9c4fcdc 26124 libfastahack0_1.0.0+dfsg-11_amd64.deb e0930cfe1a9de102cd115c3149ef115f50244581 6398 libfastahack_1.0.0+dfsg-11_amd64.buildinfo Checksums-Sha256: 5f98183397b66b8242d6253e09402592315e9b755f41812e467e29f7c538299e 76788 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb 3ffe6fa1708360ee9366e0bc31a77f7954906b8509a4d3968c6e33ba3ef45417 12572 fastahack_1.0.0+dfsg-11_amd64.deb e3077a64ecfa883e7727fe7f3d8c491b6a1a389774ff04ac223245b342fb39a3 27588 libfastahack-dev_1.0.0+dfsg-11_amd64.deb 8a78addcfef1d857d8a58d57d5f3756c90001af1aaa2477e531509417797bb03 238156 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb ee3bc3cf696069bd700dd82f09fb3ddefb239e462253b29402690066df1280bb 26124 libfastahack0_1.0.0+dfsg-11_amd64.deb 2510e55f01319d5c1feb425f542db083331a580e69e8113058900f535a092575 6398 libfastahack_1.0.0+dfsg-11_amd64.buildinfo Files: 5a4162b1ebd70f672fdee7496072040a 76788 debug optional fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb 3be2d9d231851f3c4befa7be69dce9ec 12572 science optional fastahack_1.0.0+dfsg-11_amd64.deb c9c7a8b923ca5c2e3debcf2c00841dfe 27588 libdevel optional libfastahack-dev_1.0.0+dfsg-11_amd64.deb 537bb1fd6697a3e9f6d638aea968a59d 238156 debug optional libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb 757220f5f3561083cefcc16e77aa84bc 26124 libs optional libfastahack0_1.0.0+dfsg-11_amd64.deb 0e6c0f0ac90f9b15068a287ea9c54e59 6398 science optional libfastahack_1.0.0+dfsg-11_amd64.buildinfo 20,21c20,21 < cpp-15 (= 15.2.0-4), < cpp-15-x86-64-linux-gnu (= 15.2.0-4), --- > cpp-15 (= 15.2.0-3), > cpp-15-x86-64-linux-gnu (= 15.2.0-3), 38,39c38,39 < g++-15 (= 15.2.0-4), < g++-15-x86-64-linux-gnu (= 15.2.0-4), --- > g++-15 (= 15.2.0-3), > g++-15-x86-64-linux-gnu (= 15.2.0-3), 42,44c42,44 < gcc-15 (= 15.2.0-4), < gcc-15-base (= 15.2.0-4), < gcc-15-x86-64-linux-gnu (= 15.2.0-4), --- > gcc-15 (= 15.2.0-3), > gcc-15-base (= 15.2.0-3), > gcc-15-x86-64-linux-gnu (= 15.2.0-3), 58,59c58,59 < libasan8 (= 15.2.0-4), < libatomic1 (= 15.2.0-4), --- > libasan8 (= 15.2.0-3), > libatomic1 (= 15.2.0-3), 73c73 < libcc1-0 (= 15.2.0-4), --- > libcc1-0 (= 15.2.0-3), 86,87c86,87 < libgcc-15-dev (= 15.2.0-4), < libgcc-s1 (= 15.2.0-4), --- > libgcc-15-dev (= 15.2.0-3), > libgcc-s1 (= 15.2.0-3), 91c91 < libgomp1 (= 15.2.0-4), --- > libgomp1 (= 15.2.0-3), 94c94 < libhwasan0 (= 15.2.0-4), --- > libhwasan0 (= 15.2.0-3), 96c96 < libitm1 (= 15.2.0-4), --- > libitm1 (= 15.2.0-3), 100c100 < liblsan0 (= 15.2.0-4), --- > liblsan0 (= 15.2.0-3), 117c117 < libquadmath0 (= 15.2.0-4), --- > libquadmath0 (= 15.2.0-3), 127,128c127,128 < libstdc++-15-dev (= 15.2.0-4), < libstdc++6 (= 15.2.0-4), --- > libstdc++-15-dev (= 15.2.0-3), > libstdc++6 (= 15.2.0-3), 132,133c132,133 < libtsan2 (= 15.2.0-4), < libubsan1 (= 15.2.0-4), --- > libtsan2 (= 15.2.0-3), > libubsan1 (= 15.2.0-3), ============================================================================= Wed Sep 17 21:34:37 UTC 2025 - The installed build depends vary according to the two .buildinfo files, probably due to mirror updates. Doing the first build on infom01-amd64.debian.net again. ============================================================================= Wed Sep 17 21:34:37 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Wed Sep 17 21:34:37 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Wed Sep 17 21:34:37 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-dxgJu0' ==================================================================================== Wed Sep 17 21:34:37 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 libfastahack forky /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv 1.0.0+dfsg-11" as arguments. Wed Sep 17 21:34:37 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-hDisdc5w" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 17 21:34:38 UTC 2025 I: Downloading source for forky/libfastahack=1.0.0+dfsg-11 Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (98.3 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libfastahack' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libfastahack.git Please use: git clone https://salsa.debian.org/med-team/libfastahack.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.1 kB of source archives. Get:1 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (dsc) [2357 B] Get:2 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (tar) [9088 B] Get:3 http://deb.debian.org/debian forky/main libfastahack 1.0.0+dfsg-11 (diff) [7624 B] Fetched 19.1 kB in 0s (98.3 kB/s) Download complete and in download only mode ============================================================================= Building libfastahack in forky on amd64 on infom01-amd64 now. Date: Wed Sep 17 21:34:38 UTC 2025 Date UTC: Wed Sep 17 21:34:38 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 09:34:38 -12 2025 I: pbuilder-time-stamp: 1758144878 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3331592/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5b4655fa4185434aa88ba1296ade08e1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3331592' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_TJVi --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3331592/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After unpacking 43.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get: 34 http://deb.debian.org/debian forky/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Fetched 11.5 MB in 1s (10.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... 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Preparing to unpack .../33-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up d-shlibs (0.109) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 18474: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbolsf842E7 2025-09-17 21:36:08.036997348 +0000 @@ -32,28 +32,36 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - 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_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_appendIJRKS0_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.0.0+dfsg-11 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# 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(optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg - (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg (optional)_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3331592 and its subdirectories I: Current time: Wed Sep 17 09:36:13 -12 2025 I: pbuilder-time-stamp: 1758144973 Wed Sep 17 21:36:13 UTC 2025 I: Signing ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Sep 17 21:36:13 UTC 2025 I: Signed ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo as ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc Wed Sep 17 21:36:13 UTC 2025 - build #1 for libfastahack/forky/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Wed Sep 17 21:36:13 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hDisdc5w, removing. /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv: total 84 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:36 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 17 21:34 b2 -rw-rw-r-- 1 jenkins jenkins 2357 Dec 5 2023 libfastahack_1.0.0+dfsg-11.dsc -rw------- 1 jenkins jenkins 52784 Sep 17 21:34 rbuildlog.Qdsoy6T -rw------- 1 jenkins jenkins 4375 Sep 17 21:34 tmp.LnPd5NzLCg -rw------- 1 jenkins jenkins 4375 Sep 17 21:34 tmp.MNjq6CNbyQ /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1: total 476 -rw-r--r-- 1 jenkins jenkins 45702 Sep 17 21:36 build.log -rw-r--r-- 1 jenkins jenkins 76788 Sep 17 21:36 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 12572 Sep 17 21:36 fastahack_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 27588 Sep 17 21:36 libfastahack-dev_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 238156 Sep 17 21:36 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 26124 Sep 17 21:36 libfastahack0_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 7624 Sep 17 21:36 libfastahack_1.0.0+dfsg-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2357 Sep 17 21:36 libfastahack_1.0.0+dfsg-11.dsc -rw-r--r-- 1 jenkins jenkins 6398 Sep 17 21:36 libfastahack_1.0.0+dfsg-11_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7280 Sep 17 21:36 libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 3021 Sep 17 21:36 libfastahack_1.0.0+dfsg-11_amd64.changes -rw-r--r-- 1 jenkins jenkins 1762 Sep 17 21:36 libfastahack_1.0.0+dfsg-11_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b2: total 480 -rw-rw-r-- 1 jenkins jenkins 47475 Sep 17 21:34 build.log -rw-r--r-- 1 jenkins jenkins 76808 Sep 17 21:34 fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 12896 Sep 17 21:34 fastahack_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 29312 Sep 17 21:34 libfastahack-dev_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 238168 Sep 17 21:34 libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 27732 Sep 17 21:34 libfastahack0_1.0.0+dfsg-11_amd64.deb -rw-r--r-- 1 jenkins jenkins 7624 Sep 17 21:34 libfastahack_1.0.0+dfsg-11.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2357 Sep 17 21:34 libfastahack_1.0.0+dfsg-11.dsc -rw-rw-r-- 1 jenkins jenkins 6392 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7274 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 3021 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1762 Sep 17 21:34 libfastahack_1.0.0+dfsg-11_source.changes Wed Sep 17 21:36:14 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 17 09:34:38 -12 2025 I: pbuilder-time-stamp: 1758144878 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libfastahack_1.0.0+dfsg-11.dsc] I: copying [./libfastahack_1.0.0+dfsg.orig.tar.xz] I: copying [./libfastahack_1.0.0+dfsg-11.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libfastahack_1.0.0+dfsg-11.dsc: no acceptable signature found dpkg-source: info: extracting libfastahack in libfastahack-1.0.0+dfsg dpkg-source: info: unpacking libfastahack_1.0.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libfastahack_1.0.0+dfsg-11.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3331592/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5b4655fa4185434aa88ba1296ade08e1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3331592' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/pbuilderrc_TJVi --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/b1 --logfile b1/build.log libfastahack_1.0.0+dfsg-11.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3331592/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on libdisorder-dev; however: Package libdisorder-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdisorder-dev{a} libdisorder0{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 11.5 MB of archives. After unpacking 43.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 d-shlibs all 0.109 [11.1 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 help2man amd64 1.49.3 [198 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get: 34 http://deb.debian.org/debian forky/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Fetched 11.5 MB in 1s (10.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libfastahack-1.0.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libfastahack_1.0.0+dfsg-11_source.changes dpkg-buildpackage: info: source package libfastahack dpkg-buildpackage: info: source version 1.0.0+dfsg-11 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro 'AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by gcc... /usr/bin/x86_64-linux-gnu-ld checking if the linker (/usr/bin/x86_64-linux-gnu-ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/x86_64-linux-gnu-ld option to reload object files... -r checking for file... file checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ranlib... ranlib checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/x86_64-linux-gnu-ld -m elf_x86_64 checking if the linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/x86_64-linux-gnu-ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 18474: AX_CXXFLAGS: command not found checking for egrep... (cached) /usr/bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make all-am make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-Fasta.lo `test -f 'Fasta.cpp' || echo './'`Fasta.cpp /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o libfastahack_la-split.lo `test -f 'split.cpp' || echo './'`split.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -fPIC -DPIC -o .libs/libfastahack_la-split.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -fPIC -DPIC -o .libs/libfastahack_la-Fasta.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c split.cpp -o libfastahack_la-split.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c Fasta.cpp -o libfastahack_la-Fasta.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libfastahack.la -rpath /usr/lib/x86_64-linux-gnu libfastahack_la-Fasta.lo libfastahack_la-split.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/15/crtbeginS.o .libs/libfastahack_la-Fasta.o .libs/libfastahack_la-split.o -L/usr/lib/gcc/x86_64-linux-gnu/15 -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/15/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/15/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/15/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libfastahack.so.0 -o .libs/libfastahack.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libfastahack.so.0" && ln -s "libfastahack.so.0.0.0" "libfastahack.so.0") libtool: link: (cd ".libs" && rm -f "libfastahack.so" && ln -s "libfastahack.so.0.0.0" "libfastahack.so") libtool: link: ar cr .libs/libfastahack.a libfastahack_la-Fasta.o libfastahack_la-split.o libtool: link: ranlib .libs/libfastahack.a libtool: link: ( cd ".libs" && rm -f "libfastahack.la" && ln -s "../libfastahack.la" "libfastahack.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o libfastahack.la -ldisorder libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libfastahack-1.0.0+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fastahack FastaHack.o ./.libs/libfastahack.so -ldisorder make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' ./fastahack tests/correct.fasta 2>&1 | grep -v ERROR index file tests/correct.fasta.fai not found, generating... ./fastahack tests/crlf.fasta 2>&1 | grep -v ERROR index file tests/crlf.fasta.fai not found, generating... ./fastahack tests/embedded_newline.fasta 2>&1 | grep 'ERROR: embedded newline' ERROR: embedded newline at line 20 within sequence 2 ./fastahack tests/mismatched_lines.fasta 2>&1 | grep 'ERROR: mismatched line lengths' ERROR: mismatched line lengths at line 27 within sequence 3 ./fastahack tests/trailing_newlines.fasta 2>&1 | grep -v ERROR index file tests/trailing_newlines.fasta.fai not found, generating... rm tests/*.fai make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j1 install DESTDIR=/build/reproducible-path/libfastahack-1.0.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[2]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libfastahack.la '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfastahack.so.0.0.0 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so.0 || { rm -f libfastahack.so.0 && ln -s libfastahack.so.0.0.0 libfastahack.so.0; }; }) libtool: install: (cd /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libfastahack.so.0.0.0 libfastahack.so || { rm -f libfastahack.so && ln -s libfastahack.so.0.0.0 libfastahack.so; }; }) libtool: install: /usr/bin/install -c .libs/libfastahack.lai /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.la libtool: install: /usr/bin/install -c .libs/libfastahack.a /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: chmod 644 /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: install: ranlib /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c fastahack '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin' libtool: warning: 'libfastahack.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/fastahack /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/bin/fastahack /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/install -c -m 644 Fasta.h LargeFileSupport.h Region.h split.h '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/include/fastahack' /usr/bin/mkdir -p '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libfastahack.pc '/build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[2]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.a debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so debian/libfastahack-dev/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu mv /build/reproducible-path/libfastahack-1.0.0+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libfastahack.so.0.0.0 debian/libfastahack0/usr/lib/x86_64-linux-gnu PKGDEV=libfastahack-dev PKGSHL=libfastahack0 install -d -m 755 debian/libfastahack-dev/usr/include mv debian/tmp/usr/include/fastahack debian/libfastahack-dev/usr/include install -d -m 755 debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libfastahack-dev/usr/lib/x86_64-linux-gnu/pkgconfig find debian -name libfastahack.la -delete make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_installdocs dh_installchangelogs debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' help2man --no-discard-stderr --no-info --version-string=1.0.0+dfsg-11 \ --name="fastahack - indexing and extracting sequences and subsequences from FASTA files" \ ./fastahack > debian/fastahack.1 dh_installman make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' echo "On architecture amd64 symbols file is provided" On architecture amd64 symbols file is provided dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libfastahack0/DEBIAN/symbols doesn't match completely debian/libfastahack0.symbols --- debian/libfastahack0.symbols (libfastahack0_1.0.0+dfsg-11_amd64) +++ dpkg-gensymbolsf842E7 2025-09-17 21:36:08.036997348 +0000 @@ -32,28 +32,36 @@ _ZN15FastaIndexEntryD1Ev@Base 0.0+git20160702.bbc645f _ZN15FastaIndexEntryD2Ev@Base 0.0+git20160702.bbc645f (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 0.0+git20160702.bbc645f - 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_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_appendIJRKS0_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorI15FastaIndexEntrySaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJRKS5_EEEvDpOT_@Base 1.0.0+dfsg-11 + _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_appendIJS5_EEEvDpOT_@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 1.0.0+dfsg (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 0.0+git20160702.bbc645f (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f + _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE12_M_constructILb1EEEvPKcm@Base 1.0.0+dfsg-11 +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE17_M_emplace_uniqueIJS6_IS5_S8_EEEES6_ISt17_Rb_tree_iteratorIS9_EbEDpOT_@Base 0.0+git20160702.bbc645f (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 1.0.0+dfsg - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f - (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_15FastaIndexEntryESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__push_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops14_Iter_comp_valIPFbS2_S2_EEEEvT_T0_SE_T1_RT2_@Base 0.0+git20160702.bbc645f +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt11__remove_ifIPcN9__gnu_cxx5__ops16_Iter_equals_valIKcEEET_S6_S6_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__adjust_heapIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElS2_NS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_T0_SE_T1_T2_@Base 0.0+git20160702.bbc645f (optional)_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_T0_@Base 1.0.0+dfsg - (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt16__do_uninit_copyIPK15FastaIndexEntryPS0_ET0_T_S5_S4_@Base 1.0.0+dfsg (optional)_ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_@Base 0.0+git20160702.bbc645f (optional)_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEElNS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_T0_T1_@Base 0.0+git20160702.bbc645f - (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg +#MISSING: 1.0.0+dfsg-11# (optional)_ZSt22__move_median_to_firstIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_comp_iterIPFbS2_S2_EEEEvT_SD_SD_SD_T0_@Base 1.0.0+dfsg (optional)_ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP15FastaIndexEntrySt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_comp_iterIPFbS2_S2_EEEEvT_T0_@Base 0.0+git20160702.bbc645f _ZlsRSoR10FastaIndex@Base 0.0+git20160702.bbc645f _ZlsRSoRK15FastaIndexEntry@Base 0.0+git20160702.bbc645f echo "dh_makeshlibs for architecture amd64 including symbols done" dh_makeshlibs for architecture amd64 including symbols done make[1]: Leaving directory '/build/reproducible-path/libfastahack-1.0.0+dfsg' dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libfastahack0' in '../libfastahack0_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack0-dbgsym' in '../libfastahack0-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'libfastahack-dev' in '../libfastahack-dev_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack' in '../fastahack_1.0.0+dfsg-11_amd64.deb'. dpkg-deb: building package 'fastahack-dbgsym' in '../fastahack-dbgsym_1.0.0+dfsg-11_amd64.deb'. dpkg-genbuildinfo --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.buildinfo dpkg-genchanges --build=binary -O../libfastahack_1.0.0+dfsg-11_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3331592 and its subdirectories I: Current time: Wed Sep 17 09:36:13 -12 2025 I: pbuilder-time-stamp: 1758144973 20,21c20,21 < cpp-15 (= 15.2.0-4), < cpp-15-x86-64-linux-gnu (= 15.2.0-4), --- > cpp-15 (= 15.2.0-3), > cpp-15-x86-64-linux-gnu (= 15.2.0-3), 38,39c38,39 < g++-15 (= 15.2.0-4), < g++-15-x86-64-linux-gnu (= 15.2.0-4), --- > g++-15 (= 15.2.0-3), > g++-15-x86-64-linux-gnu (= 15.2.0-3), 42,44c42,44 < gcc-15 (= 15.2.0-4), < gcc-15-base (= 15.2.0-4), < gcc-15-x86-64-linux-gnu (= 15.2.0-4), --- > gcc-15 (= 15.2.0-3), > gcc-15-base (= 15.2.0-3), > gcc-15-x86-64-linux-gnu (= 15.2.0-3), 58,59c58,59 < libasan8 (= 15.2.0-4), < libatomic1 (= 15.2.0-4), --- > libasan8 (= 15.2.0-3), > libatomic1 (= 15.2.0-3), 73c73 < libcc1-0 (= 15.2.0-4), --- > libcc1-0 (= 15.2.0-3), 86,87c86,87 < libgcc-15-dev (= 15.2.0-4), < libgcc-s1 (= 15.2.0-4), --- > libgcc-15-dev (= 15.2.0-3), > libgcc-s1 (= 15.2.0-3), 91c91 < libgomp1 (= 15.2.0-4), --- > libgomp1 (= 15.2.0-3), 94c94 < libhwasan0 (= 15.2.0-4), --- > libhwasan0 (= 15.2.0-3), 96c96 < libitm1 (= 15.2.0-4), --- > libitm1 (= 15.2.0-3), 100c100 < liblsan0 (= 15.2.0-4), --- > liblsan0 (= 15.2.0-3), 117c117 < libquadmath0 (= 15.2.0-4), --- > libquadmath0 (= 15.2.0-3), 127,128c127,128 < libstdc++-15-dev (= 15.2.0-4), < libstdc++6 (= 15.2.0-4), --- > libstdc++-15-dev (= 15.2.0-3), > libstdc++6 (= 15.2.0-3), 132,133c132,133 < libtsan2 (= 15.2.0-4), < libubsan1 (= 15.2.0-4), --- > libtsan2 (= 15.2.0-3), > libubsan1 (= 15.2.0-3), UPDATE 1 Wed Sep 17 21:36:14 UTC 2025 - https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/81570/console.log encountered a problem: different packages were installed in the 1st+2nd builds and also in the 2nd+3rd build. -rw-r--r-- 1 jenkins jenkins 6398 Sep 17 21:36 ./b1/libfastahack_1.0.0+dfsg-11_amd64.buildinfo on infom01-amd64.debian.net -rw-rw-r-- 1 jenkins jenkins 6392 Sep 17 21:34 ./b2/libfastahack_1.0.0+dfsg-11_amd64.buildinfo on infom02-amd64.debian.net Starting cleanup. /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/rbuildlog.Qdsoy6T: 78.3% -- replaced with /srv/reproducible-results/rbuild-debian/r-b-build.wZHBEtfv/rbuildlog.Qdsoy6T.gz [2025-09-17 21:36:14] INFO: Starting at 2025-09-17 21:36:14.966772 [2025-09-17 21:36:15] INFO: Generating the pages of 1 package(s) [2025-09-17 21:36:15] INFO: Finished at 2025-09-17 21:36:15.241780, took: 0:00:00.275011 All cleanup done. Wed Sep 17 21:36:15 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-yX6OgdXi, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 5min 35.976s CPU time consumed: 1.738s Memory peak: 40.3M (swap: 0B)