Running as unit: rb-build-amd64_33-88226.service; invocation ID: 14105f1fba414d3bb651172c1df9bdcc ==================================================================================== Fri Oct 31 11:05:18 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_33) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Fri Oct 31 11:05:18 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-mghHO7DZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 11:05:18 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Fri Oct 31 11:05:18 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-bDEgb2' Fri Oct 31 11:05:19 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Fri Oct 31 11:05:19 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-xxkBZD' ok, let's check if veryfasttree is building anywhere yet… ok, veryfasttree is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of veryfasttree in forky on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Fri Oct 31 11:05:36 UTC 2025 I: starting to build veryfasttree/forky/amd64 on jenkins on '2025-10-31 11:05' Fri Oct 31 11:05:36 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_33/88226/console.log 1761908736 amd64 forky veryfasttree Fri Oct 31 11:05:36 UTC 2025 I: Downloading source for forky/veryfasttree=4.0.5+dfsg-2 --2025-10-31 11:05:36-- http://deb.debian.org/debian/pool/main/v/veryfasttree/veryfasttree_4.0.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2260 (2.2K) [text/prs.lines.tag] Saving to: ‘veryfasttree_4.0.5+dfsg-2.dsc’ 0K .. 100% 303M=0s 2025-10-31 11:05:36 (303 MB/s) - ‘veryfasttree_4.0.5+dfsg-2.dsc’ saved [2260/2260] --2025-10-31 11:05:36-- http://deb.debian.org/debian/pool/main/v/veryfasttree/veryfasttree_4.0.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2260 (2.2K) [text/prs.lines.tag] Saving to: ‘veryfasttree_4.0.5+dfsg-2.dsc’ 0K .. 100% 303M=0s 2025-10-31 11:05:36 (303 MB/s) - ‘veryfasttree_4.0.5+dfsg-2.dsc’ saved [2260/2260] Fri Oct 31 11:05:36 UTC 2025 I: veryfasttree_4.0.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: veryfasttree Binary: veryfasttree Architecture: any Version: 4.0.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: César Pomar Homepage: https://github.com/citiususc/veryfasttree Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/veryfasttree Vcs-Git: https://salsa.debian.org/med-team/veryfasttree.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev Package-List: veryfasttree deb science optional arch=any Checksums-Sha1: 17b31111fae120fed9db942c127ea663242a5c92 164184 veryfasttree_4.0.5+dfsg.orig.tar.xz dfc40b755461d2d5167e819a2b82288d42327251 30260 veryfasttree_4.0.5+dfsg-2.debian.tar.xz Checksums-Sha256: a37c239c27c562c0dd57c263306dfd676ff53ede3d21d1521170f34cf3f1c1aa 164184 veryfasttree_4.0.5+dfsg.orig.tar.xz 8cc7c52d63b3b98966818f630eb91add585b7b724330df71e2a8271992c68d24 30260 veryfasttree_4.0.5+dfsg-2.debian.tar.xz Files: b17ed1803582db689c1f3995bc7567f7 164184 veryfasttree_4.0.5+dfsg.orig.tar.xz c6421389f0e0c63789db3fdd9970b14c 30260 veryfasttree_4.0.5+dfsg-2.debian.tar.xz Dgit: 264893a3c287548b3827f6c731f59973f96eec91 debian archive/debian/4.0.5+dfsg-2 https://git.dgit.debian.org/veryfasttree -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmj7y+cUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrnKA//Rvp3wsjJQ6zG/jnCLYejSus9onkV /tf1uCf9pP32PRmuuf0tW0G0aOh5+DnXlWaq3r/mu//0Fyti9CgMNmAzMw4eIlVx PXrza2rLg3+HyfWApUbkqJHzc+BBjcInIU8A7h/EBEjFM7FStc6sBnN39qHTZkdS ZyHF0ij/5U9bIYCuwmBvqo/+nBYnRNB7hWvLdfGecrOJkiv40DSg9uMwW59uzwyL EHF4U/tuAPREdQ8i51tLUVLI5Xnv0kmrbucbI/UhdklLJGHU5WuGl4LgcSqIkiFl OogxHnrLAl8jm2LvEI6h16Ft30g+LWE7GksrTPb7ETd7Ql4Q97bXwDRJnvE/lqXY th2MBv8hQhAjGuh0dRh41Nm9xBjzP0TLE1rTOgkxptOjVDd5t6/yu7f67wQw/UFF L19PI2Vrv1/Sw9vFlphO7BayAHtO/klzSNZGsWW5aIDAJjSQdAdFINwixecMirJC 7KLh5F68ELRLco93TLpur86mbOTyT5mvmGVWUEJ6S68wekO4IfL9WVOLt27JgW8M nfc0btC+yOJRVsYlAz5PLf/Jx9VGPM+nZ1QkqsVYqAS4RPNbjHqCNSSt4bqlsRlL E5YRvNG9CssFKatlDKGpmDzqLUNG5jAaC/uKxLjSEUbfL3Q0+VpuczBbE0GRyqUM W12KRS0xh+BCYJQ= =bj2s -----END PGP SIGNATURE----- Fri Oct 31 11:05:36 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 11:05:36 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Fri Oct 31 11:05:36 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Fri Oct 31 11:05:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Fri Oct 31 11:05:36 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-DQ0aWn' ==================================================================================== Fri Oct 31 11:05:37 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 veryfasttree forky /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9 4.0.5+dfsg-2" as arguments. Fri Oct 31 11:05:37 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-vWzN3txK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 11:05:37 UTC 2025 I: Downloading source for forky/veryfasttree=4.0.5+dfsg-2 Reading package lists... NOTICE: 'veryfasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/veryfasttree.git Please use: git clone https://salsa.debian.org/med-team/veryfasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 197 kB of source archives. Get:1 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (dsc) [2260 B] Get:2 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (tar) [164 kB] Get:3 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (diff) [30.3 kB] Fetched 197 kB in 0s (1296 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'veryfasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/veryfasttree.git Please use: git clone https://salsa.debian.org/med-team/veryfasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 197 kB of source archives. Get:1 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (dsc) [2260 B] Get:2 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (tar) [164 kB] Get:3 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (diff) [30.3 kB] Fetched 197 kB in 0s (1296 kB/s) Download complete and in download only mode ============================================================================= Building veryfasttree in forky on amd64 on infom01-amd64 now. Date: Fri Oct 31 11:05:37 UTC 2025 Date UTC: Fri Oct 31 11:05:37 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 23:05:37 -12 2025 I: pbuilder-time-stamp: 1761908737 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [veryfasttree_4.0.5+dfsg-2.dsc] I: copying [./veryfasttree_4.0.5+dfsg.orig.tar.xz] I: copying [./veryfasttree_4.0.5+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./veryfasttree_4.0.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting veryfasttree in veryfasttree-4.0.5+dfsg dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying robin_map.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9b3004d0ad96408ea16c93647243eded' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1287835' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_WMAk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1 --logfile b1/build.log veryfasttree_4.0.5+dfsg-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on robin-map-dev; however: Package robin-map-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} libxxhash-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} robin-map-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 48.9 MB of archives. After unpacking 321 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-10 [52.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-10 [2670 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-10 [2674 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 66 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 67 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.4.0-2 [29.6 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 48.9 MB in 2s (27.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. 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Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libxxhash-dev:amd64 (0.8.3-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.4.0-2) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libgcc-14-dev:amd64 (14.3.0-10) ... Setting up libstdc++-14-dev:amd64 (14.3.0-10) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:amd64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_auto_clean rm -Rf build_* make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for i in "sse2 SEE2" "sse4_1 SEE4" "avx AVX" "avx2 AVX2" "avx512f AVX512" ; do \ set -- ${i} ; \ dh_auto_configure --builddirectory build_${1} -- \ -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_${2}=ON ; \ done cd build_sse2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 cd build_sse4_1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE4=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.9s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 cd build_avx512f && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX512=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for SIMD in avx512f avx2 avx sse4_1 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done cd build_avx512f && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' cd build_avx2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' cd build_sse4_1 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o [ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o 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-O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' cd build_sse2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' [ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o [ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' mkdir -p build_simd cp debian/bin/VeryFastTree-simd build_simd/VeryFastTree make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_install build_*/VeryFastTree-* /usr/libexec/VeryFastTree/ dh_install build_*/VeryFastTree /usr/bin/ make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'veryfasttree' in '../veryfasttree_4.0.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1287835 and its subdirectories I: Current time: Thu Oct 30 23:12:38 -12 2025 I: pbuilder-time-stamp: 1761909158 Fri Oct 31 11:12:38 UTC 2025 I: Signing ./b1/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo as veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc Fri Oct 31 11:12:38 UTC 2025 I: Signed ./b1/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo as ./b1/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc Fri Oct 31 11:12:38 UTC 2025 - build #1 for veryfasttree/forky/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Fri Oct 31 11:12:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-vWzN3txK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 11:12 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 11:05 b2 -rw------- 1 jenkins jenkins 3418 Oct 31 11:05 rbuildlog.gcMNvr6 -rw-rw-r-- 1 jenkins jenkins 2260 Oct 24 19:10 veryfasttree_4.0.5+dfsg-2.dsc /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1: total 72792 -rw-r--r-- 1 jenkins jenkins 220366 Oct 31 11:12 build.log -rw-r--r-- 1 jenkins jenkins 71767652 Oct 31 11:12 veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 30260 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2260 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 6235 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7117 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1699 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2484340 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1523 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2: total 0 Fri Oct 31 11:12:40 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Oct 30 23:05:37 -12 2025 I: pbuilder-time-stamp: 1761908737 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [veryfasttree_4.0.5+dfsg-2.dsc] I: copying [./veryfasttree_4.0.5+dfsg.orig.tar.xz] I: copying [./veryfasttree_4.0.5+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./veryfasttree_4.0.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting veryfasttree in veryfasttree-4.0.5+dfsg dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying robin_map.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9b3004d0ad96408ea16c93647243eded' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1287835' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_WMAk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1 --logfile b1/build.log veryfasttree_4.0.5+dfsg-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on robin-map-dev; however: Package robin-map-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} libxxhash-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} robin-map-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 48.9 MB of archives. After unpacking 321 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-10 [52.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-10 [2670 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-10 [2674 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 66 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 67 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.4.0-2 [29.6 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 48.9 MB in 2s (27.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../21-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../22-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... 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Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../44-libcurl4t64_8.17.0~rc2-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.17.0~rc2-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../45-libjsoncpp26_1.9.6-4_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-4) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../46-librhash1_1.4.6-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../47-libuv1t64_1.51.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../48-cmake_4.1.1+really3.31.6-2_amd64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../49-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../50-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../51-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../52-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../53-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../54-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. 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Unpacking gcc-14-base:amd64 (14.3.0-10) ... Selecting previously unselected package libgcc-14-dev:amd64. Preparing to unpack .../62-libgcc-14-dev_14.3.0-10_amd64.deb ... Unpacking libgcc-14-dev:amd64 (14.3.0-10) ... Selecting previously unselected package libstdc++-14-dev:amd64. Preparing to unpack .../63-libstdc++-14-dev_14.3.0-10_amd64.deb ... Unpacking libstdc++-14-dev:amd64 (14.3.0-10) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../64-libboost1.83-dev_1.83.0-5_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-5) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../65-libboost-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../66-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libxxhash-dev:amd64. Preparing to unpack .../67-libxxhash-dev_0.8.3-2_amd64.deb ... Unpacking libxxhash-dev:amd64 (0.8.3-2) ... Selecting previously unselected package robin-map-dev. Preparing to unpack .../68-robin-map-dev_1.4.0-2_all.deb ... Unpacking robin-map-dev (1.4.0-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../69-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:amd64 (14.3.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libxxhash-dev:amd64 (0.8.3-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.4.0-2) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libgcc-14-dev:amd64 (14.3.0-10) ... Setting up libstdc++-14-dev:amd64 (14.3.0-10) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:amd64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... 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Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_auto_clean rm -Rf build_* make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for i in "sse2 SEE2" "sse4_1 SEE4" "avx AVX" "avx2 AVX2" "avx512f AVX512" ; do \ set -- ${i} ; \ dh_auto_configure --builddirectory build_${1} -- \ -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_${2}=ON ; \ done cd build_sse2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 cd build_sse4_1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE4=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.9s) -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 cd build_avx512f && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX512=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for SIMD in avx512f avx2 avx sse4_1 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done cd build_avx512f && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' cd build_avx2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o [ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp [ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o 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/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' cd build_sse2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg 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-DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF 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ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' mkdir -p build_simd cp debian/bin/VeryFastTree-simd build_simd/VeryFastTree make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_install build_*/VeryFastTree-* /usr/libexec/VeryFastTree/ dh_install build_*/VeryFastTree /usr/bin/ make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'veryfasttree' in '../veryfasttree_4.0.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1287835 and its subdirectories I: Current time: Thu Oct 30 23:12:38 -12 2025 I: pbuilder-time-stamp: 1761909158 Fri Oct 31 11:12:40 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Fri Oct 31 11:12:40 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Fri Oct 31 11:12:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Fri Oct 31 11:12:40 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-g9GTNM' ==================================================================================== Thu Dec 3 17:35:41 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 veryfasttree forky /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9 4.0.5+dfsg-2" as arguments. Thu Dec 3 17:35:41 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-XBrKnvm7" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 3 17:35:41 UTC 2026 I: Downloading source for forky/veryfasttree=4.0.5+dfsg-2 Reading package lists... NOTICE: 'veryfasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/veryfasttree.git Please use: git clone https://salsa.debian.org/med-team/veryfasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 197 kB of source archives. Get:1 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (dsc) [2260 B] Get:2 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (tar) [164 kB] Get:3 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (diff) [30.3 kB] Fetched 197 kB in 0s (2165 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'veryfasttree' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/veryfasttree.git Please use: git clone https://salsa.debian.org/med-team/veryfasttree.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 197 kB of source archives. Get:1 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (dsc) [2260 B] Get:2 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (tar) [164 kB] Get:3 http://deb.debian.org/debian forky/main veryfasttree 4.0.5+dfsg-2 (diff) [30.3 kB] Fetched 197 kB in 0s (2165 kB/s) Download complete and in download only mode ============================================================================= Re-Building veryfasttree in forky on amd64 on infom02-amd64 now. Date: Thu Dec 3 17:35:41 UTC 2026 Date UTC: Thu Dec 3 17:35:41 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_YqhV + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' veryfasttree = debian-installer -o veryfasttree = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' veryfasttree = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_YqhV --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2 --logfile b2/build.log veryfasttree_4.0.5+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 07:35:41 +14 2026 I: pbuilder-time-stamp: 1796319341 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [veryfasttree_4.0.5+dfsg-2.dsc] I: copying [./veryfasttree_4.0.5+dfsg.orig.tar.xz] I: copying [./veryfasttree_4.0.5+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./veryfasttree_4.0.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting veryfasttree in veryfasttree-4.0.5+dfsg dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg.orig.tar.xz dpkg-source: info: unpacking veryfasttree_4.0.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying robin_map.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 3 17:35 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=a0c3f76439d54522b03bcbd747182a3b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1538089 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_YqhV --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2 --logfile b2/build.log veryfasttree_4.0.5+dfsg-2.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-dev, libbz2-dev, robin-map-dev, libxxhash-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on robin-map-dev; however: Package robin-map-dev is not installed. pbuilder-satisfydepends-dummy depends on libxxhash-dev; however: Package libxxhash-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} libxxhash-dev{a} m4{a} man-db{a} po-debconf{a} procps{a} robin-map-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 48.9 MB of archives. After unpacking 321 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-2 [325 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.18.1-2 [877 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.6+dfsg-0.1 [651 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 29 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.9-2 [443 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.10-3 [1493 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.17.0~rc2-1 [408 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB] Get: 50 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-7 [540 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 56 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 debhelper all 13.28 [941 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 gcc-14-base amd64 14.3.0-10 [52.4 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libgcc-14-dev amd64 14.3.0-10 [2670 kB] Get: 64 http://deb.debian.org/debian forky/main amd64 libstdc++-14-dev amd64 14.3.0-10 [2674 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 66 http://deb.debian.org/debian forky/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 67 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.4.0-2 [29.6 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 48.9 MB in 1s (78.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_amd64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_amd64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../19-libxml2-16_2.14.6+dfsg-0.1_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../21-libnghttp3-9_1.12.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../22-libngtcp2-16_1.16.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.16.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../23-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../24-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../25-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../30-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../31-libidn2-0_2.3.8-4_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:amd64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ... Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../38-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../39-libp11-kit0_0.25.9-2_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../40-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../41-libgnutls30t64_3.8.10-3_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.10-3) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../42-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../43-libssh2-1t64_1.11.1-1_amd64.deb ... 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Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ... Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.12.0-1) ... Setting up libxxhash-dev:amd64 (0.8.3-2) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up robin-map-dev (1.4.0-2) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libgcc-14-dev:amd64 (14.3.0-10) ... Setting up libstdc++-14-dev:amd64 (14.3.0-10) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:amd64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:amd64 (0.25.9-2) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libgnutls30t64:amd64 (3.8.10-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:amd64 (8.17.0~rc2-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_auto_clean rm -Rf build_* make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for i in "sse2 SEE2" "sse4_1 SEE4" "avx AVX" "avx2 AVX2" "avx512f AVX512" ; do \ set -- ${i} ; \ dh_auto_configure --builddirectory build_${1} -- \ -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_${2}=ON ; \ done cd build_sse2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 cd build_sse4_1 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_SEE4=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 cd build_avx && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx cd build_avx2 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX2=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 cd build_avx512f && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DUSE_NATIVE=OFF -DUSE_SHARED=ON -DUSE_AVX512=ON .. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' for SIMD in avx512f avx2 avx sse4_1 sse2 ; do \ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done cd build_avx512f && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' cd build_avx && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp [ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp [ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp [ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp [ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp [ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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-DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' cd build_sse2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/depend make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles/VeryFastTree.dir/DependInfo.cmake "--color=" make[4]: Leaving directory 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-DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp [ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o [ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o [ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o [ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_start(long int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:70:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 70 | register int t,j; | ^ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, from /usr/include/c++/15/bits/locale_classes.h:42, from /usr/include/c++/15/bits/ios_base.h:43, from /usr/include/c++/15/ios:46, from /usr/include/c++/15/bits/ostream.h:43, from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ [100%] Linking CXX executable VeryFastTree /usr/bin/cmake -E cmake_link_script CMakeFiles/VeryFastTree.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/VeryFastTree.dir/link.d CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o CMakeFiles/VeryFastTree.dir/main.cpp.o -o VeryFastTree -lz -lbz2 /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' [100%] Built target VeryFastTree make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' mkdir -p build_simd cp debian/bin/VeryFastTree-simd build_simd/VeryFastTree make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_install build_*/VeryFastTree-* /usr/libexec/VeryFastTree/ dh_install build_*/VeryFastTree /usr/bin/ make[1]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'veryfasttree-dbgsym' in '../veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb'. dpkg-deb: building package 'veryfasttree' in '../veryfasttree_4.0.5+dfsg-2_amd64.deb'. dpkg-genbuildinfo --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.buildinfo dpkg-genchanges --build=binary -O../veryfasttree_4.0.5+dfsg-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1538089 and its subdirectories I: Current time: Fri Dec 4 07:41:06 +14 2026 I: pbuilder-time-stamp: 1796319666 + false + set +x Thu Dec 3 17:41:06 UTC 2026 I: Signing ./b2/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo as veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc Thu Dec 3 17:41:06 UTC 2026 I: Signed ./b2/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo as ./b2/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc Thu Dec 3 17:41:06 UTC 2026 - build #2 for veryfasttree/forky/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Thu Dec 3 17:41:06 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-XBrKnvm7, removing. /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9: total 236 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 11:12 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 11:18 b2 -rw------- 1 jenkins jenkins 224073 Oct 31 11:12 rbuildlog.gcMNvr6 -rw-rw-r-- 1 jenkins jenkins 2260 Oct 24 19:10 veryfasttree_4.0.5+dfsg-2.dsc /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1: total 72876 -rw-r--r-- 1 jenkins jenkins 220366 Oct 31 11:12 build.log -rw-r--r-- 1 jenkins jenkins 71767652 Oct 31 11:12 veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 30260 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2260 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 6235 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7117 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1699 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2484340 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 1523 Oct 31 11:12 veryfasttree_4.0.5+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2: total 72796 -rw-rw-r-- 1 jenkins jenkins 222287 Oct 31 11:18 build.log -rw-r--r-- 1 jenkins jenkins 71767652 Oct 31 11:18 veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb -rw-r--r-- 1 jenkins jenkins 30260 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2260 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2.dsc -rw-rw-r-- 1 jenkins jenkins 6229 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7111 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1699 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2_amd64.changes -rw-r--r-- 1 jenkins jenkins 2484340 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1523 Oct 31 11:18 veryfasttree_4.0.5+dfsg-2_source.changes Fri Oct 31 11:18:07 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Fri Oct 31 11:18:08 UTC 2025 I: veryfasttree_4.0.5+dfsg-2_amd64.changes: Format: 1.8 Date: Fri, 24 Oct 2025 20:37:22 +0200 Source: veryfasttree Binary: veryfasttree veryfasttree-dbgsym Architecture: amd64 Version: 4.0.5+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: veryfasttree - Speeding up the estimation of phylogenetic trees from sequences Closes: 1118378 Changes: veryfasttree (4.0.5+dfsg-2) unstable; urgency=medium . * Team upload. * robin_map.patch: new: bump to stdc++17. This fixes build failure with robin_map 1.4.0. (Closes: #1118378) * d/watch: convert to Github template for watch file v5. * d/control: drop redundant Rules-Requires-Root: no. Checksums-Sha1: eb61dd75cbdb8cd62f88985bb97c2985dc3fc20d 71767652 veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb 7d832a7fef10f138b018b3674a7d324d88d67c25 6235 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo add5020390c2d5700c23cf38eeeb048c7711bc4c 2484340 veryfasttree_4.0.5+dfsg-2_amd64.deb Checksums-Sha256: ec4a792d4d0b591d7758ee311be8fe86ffc5e303a9764b32936922d07d20f99f 71767652 veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb fc97b2aa5b79bd867e79a5e3e0669ca13f3abf0c21148d1e2421d658d24d2ca3 6235 veryfasttree_4.0.5+dfsg-2_amd64.buildinfo 0a92c361734dc29b2f08eb00cd2724cdbdfcc3b01aadada8dcb2a6a75e4f1d8d 2484340 veryfasttree_4.0.5+dfsg-2_amd64.deb Files: 63e63ff20002a280ec3dd52cff290421 71767652 debug optional veryfasttree-dbgsym_4.0.5+dfsg-2_amd64.deb 3ecf083f270b5038499724654dff53e4 6235 science optional veryfasttree_4.0.5+dfsg-2_amd64.buildinfo ccc0969126a95cfea276bbc92888464c 2484340 science optional veryfasttree_4.0.5+dfsg-2_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/veryfasttree_4.0.5+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/veryfasttree_4.0.5+dfsg-2.rbuild.log.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 11:12:39.359460468 +0000 +++ b2/build.log 2025-10-31 11:18:07.059830186 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 23:05:37 -12 2025 -I: pbuilder-time-stamp: 1761908737 +I: Current time: Fri Dec 4 07:35:41 +14 2026 +I: pbuilder-time-stamp: 1796319341 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying robin_map.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 17:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9b3004d0ad96408ea16c93647243eded' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1287835' - PS1='# ' - PS2='> ' + INVOCATION_ID=a0c3f76439d54522b03bcbd747182a3b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1538089 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_WMAk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1 --logfile b1/build.log veryfasttree_4.0.5+dfsg-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_YqhV --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2 --logfile b2/build.log veryfasttree_4.0.5+dfsg-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +219,7 @@ Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.4.0-2 [29.6 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 48.9 MB in 2s (27.2 MB/s) +Fetched 48.9 MB in 1s (78.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -488,7 +520,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -530,7 +566,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.9s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -561,7 +597,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.5s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -592,8 +628,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.9s) --- Generating done (0.2s) +-- Configuring done (1.1s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -623,7 +659,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.7s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -654,7 +690,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.6s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -676,7 +712,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done - cd build_avx512f && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx512f && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f//CMakeFiles/progress.marks @@ -688,30 +724,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f 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/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT 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CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 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CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -729,12 +771,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -745,22 +781,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -803,22 +839,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -832,22 +868,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -861,22 +897,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -890,22 +926,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -919,22 +955,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -948,22 +984,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -975,7 +1011,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' - cd build_avx2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2//CMakeFiles/progress.marks @@ -987,30 +1023,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o +[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 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CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1028,12 +1070,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1073,22 +1109,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1102,22 +1138,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1131,22 +1167,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1189,22 +1225,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1216,7 +1252,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' - cd build_avx && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx//CMakeFiles/progress.marks @@ -1228,30 +1264,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF 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Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp +[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong 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-O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp -[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1269,12 +1311,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1285,22 +1321,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1372,22 +1408,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1401,22 +1437,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1430,22 +1466,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1457,7 +1493,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' - cd build_sse4_1 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse4_1 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1//CMakeFiles/progress.marks @@ -1469,30 +1505,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o +[ 37%] Building CXX object 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object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp +[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 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/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp [ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp -[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1510,12 +1552,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1526,22 +1562,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1555,22 +1591,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1584,22 +1620,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1613,22 +1649,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1640,7 +1676,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' - cd build_sse2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2//CMakeFiles/progress.marks @@ -1652,32 +1688,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' -[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp -[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 56%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp +/usr/bin/c++ 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp +[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o +[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o +[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp -[ 75%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1695,10 +1735,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1859,12 +1895,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1287835 and its subdirectories -I: Current time: Thu Oct 30 23:12:38 -12 2025 -I: pbuilder-time-stamp: 1761909158 +I: removing directory /srv/workspace/pbuilder/1538089 and its subdirectories +I: Current time: Fri Dec 4 07:41:06 +14 2026 +I: pbuilder-time-stamp: 1796319666 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/veryfasttree_4.0.5+dfsg-2.diff: 94.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/veryfasttree_4.0.5+dfsg-2.diff.gz b2/build.log: 93.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 93.4% -- replaced with stdout Fri Oct 31 11:18:08 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_veryfasttree_forky_amd64_1761909488 + touch /var/log/reproducible-builds/diffoscope_stamp_veryfasttree_forky_amd64_1761909488 + RESULT=0 + systemd-run '--description=diffoscope on veryfasttree/4.0.5+dfsg-2 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_33-88226 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9 --run-session -c jenkins-reproducible-forky-diffoscope-040c4f15-63d4-4a4f-a6c8-b6f9710b08af -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/dbd-tmp-PDNTtfo ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1/veryfasttree_4.0.5+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2/veryfasttree_4.0.5+dfsg-2_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_33-88226.service; invocation ID: 59f8adbaa1804be2b0104218e8cebff8 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/veryfasttree_4.0.5+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1/veryfasttree_4.0.5+dfsg-2_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2/veryfasttree_4.0.5+dfsg-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 209ms CPU time consumed: 171ms Memory peak: 18M (swap: 0B) __ _ _ __ _____ _ __ _ _ / _| __ _ ___| |_| |_ _ __ ___ ___ \ \ / / _ \ '__| | | | |_ / _` / __| __| __| '__/ _ \/ _ \ \ V / __/ | | |_| | _| (_| \__ \ |_| |_| | | __/ __/ \_/ \___|_| \__, |_| \__,_|___/\__|\__|_| \___|\___| |___/ Fri Oct 31 11:18:09 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 11:18:09 UTC 2025 I: veryfasttree from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 11:18:09] INFO: Starting at 2025-10-31 11:18:09.835820 [2025-10-31 11:18:09] INFO: Generating the pages of 1 package(s) [2025-10-31 11:18:10] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/veryfasttree didn't produce a buildlog, even though it has been built. [2025-10-31 11:18:10] INFO: Finished at 2025-10-31 11:18:10.036098, took: 0:00:00.200280 Fri Oct 31 11:18:10 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/veryfasttree.html Fri Oct 31 11:18:10 UTC 2025 I: Removing signed veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc files: removed './b1/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc' removed './b2/veryfasttree_4.0.5+dfsg-2_amd64.buildinfo.asc' 1761909490 amd64 forky veryfasttree Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/veryfasttree_4.0.5+dfsg-2.rbuild.log: 92.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/veryfasttree_4.0.5+dfsg-2.rbuild.log.gz [2025-10-31 11:18:10] INFO: Starting at 2025-10-31 11:18:10.358720 [2025-10-31 11:18:10] INFO: Generating the pages of 1 package(s) [2025-10-31 11:18:10] INFO: Finished at 2025-10-31 11:18:10.552779, took: 0:00:00.194062 All cleanup done. Fri Oct 31 11:18:10 UTC 2025 - total duration: 0h 12m 51s. Fri Oct 31 11:18:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-mghHO7DZ, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 12min 51.939s CPU time consumed: 4.079s Memory peak: 184.2M (swap: 0B)