Running as unit: rb-build-amd64_34-36828.service ==================================================================================== Sun Nov 24 16:26:47 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_34) on jenkins, called using "infom02-amd64 infom01-amd64" as arguments. Sun Nov 24 16:26:47 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-f057LB6v" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 16:26:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 16:26:47 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-s0u2GQ' Sun Nov 24 16:26:48 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 16:26:48 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-22gLdF' ok, let's check if metaphlan is building anywhere yet… ok, metaphlan is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of metaphlan in trixie on amd64 on jenkins now. 1st build will be done on infom02-amd64.debian.net. 2nd build will be done on infom01-amd64.debian.net. ============================================================================= Sun Nov 24 16:26:56 UTC 2024 I: starting to build metaphlan/trixie/amd64 on jenkins on '2024-11-24 16:26' Sun Nov 24 16:26:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/36828/console.log 1732465616 amd64 trixie metaphlan Sun Nov 24 16:26:56 UTC 2024 I: Downloading source for trixie/metaphlan=4.0.4-1 --2024-11-24 16:26:56-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 291M=0s 2024-11-24 16:26:56 (291 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] --2024-11-24 16:26:56-- http://deb.debian.org/debian/pool/main/m/metaphlan/metaphlan_4.0.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2047 (2.0K) [text/prs.lines.tag] Saving to: ‘metaphlan_4.0.4-1.dsc’ 0K . 100% 291M=0s 2024-11-24 16:26:56 (291 MB/s) - ‘metaphlan_4.0.4-1.dsc’ saved [2047/2047] Sun Nov 24 16:26:56 UTC 2024 I: metaphlan_4.0.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/biobakery/MetaPhlAn Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/metaphlan Vcs-Git: https://salsa.debian.org/med-team/metaphlan.git Build-Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython Package-List: metaphlan deb science optional arch=all Checksums-Sha1: 6155334673fac2ac7b4957019f7f59438e5c0042 1891888 metaphlan_4.0.4.orig.tar.gz 42359168a4bd3c44441da28cad4ce600270bc190 458252 metaphlan_4.0.4-1.debian.tar.xz Checksums-Sha256: 3eccd2d76fd137cd113fb35700452aa215b5f0af32f4e1173c1db6366d0ac304 1891888 metaphlan_4.0.4.orig.tar.gz e70a8a0acf7e032cf217dadf9b8312ba40b4be3f344daae1fc80b8bb3fadb2a7 458252 metaphlan_4.0.4-1.debian.tar.xz Files: 3d9fb1e382d01e6f95879a05f449d364 1891888 metaphlan_4.0.4.orig.tar.gz 43d9caf26dd36d38b5653efd77be7d54 458252 metaphlan_4.0.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPadA8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGfeA//eiKVPU5YiIy5zNhXLGq0ZALV2Uw/vwdq xY7TBN8EAuI3bVDamCRceM6UWYy0Hl+f1SY+NJ6CWHw87G9q7TAwDRHk0lFuAC6s GsjdcvxPM0xGu3ViUsVgiOGYVQS5Z4Rh1ZDJjaowU6JGW7yh7qGbS+zFh/WHUQRS xpkjviaQTK/0ZpTU/2pFtnsG4E9qZ7O1MC08oKByMxPsozTtYHA/hdSx5+iu/pl6 S1/WQ0qknq0FvozW1ts1IaY+D9+viAX+NKnOxz04n8Gnp8TQOIH97b/MKUGPc/bK +gUJ03qH4iOSReCJYHwi7Wz8+Cg8r0HIMhO9LaoWi/OpHXZLAI8FbFxkUwpl6fFq 7T0U7T6wbhMOedtNviXG/pM9Trvy8RoFmCfMwwFjnutzaL9XLqEoErCHcQKji/sk OBa+kIOTnSE7SFFDw+muKgBViF1HIwJ9zIUeVrKwIbvIeAXloQzuvYy2KdCZm9LR D9jw+ZhKyVjlDvfQ0BgRbkwqY/gMDiC7ffJ4KqWzE/sKDBmY6FwTQxo42BXnImmv tqM/DMsXjOUxDO8yCDl8GbEQttZc91oeQY7BtL4jMjgqIP6RqSc7/7vU6DKsyQUv cyLh0Ei86Cov1UUBwSLHHJx4Xi9HMXI6ljbveGefmaaKKuzxrsyWPsf2qh+c9Equ gRgrrCFC7yI= =Uzhz -----END PGP SIGNATURE----- Sun Nov 24 16:26:56 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 16:26:56 UTC 2024 I: Starting 1st build on remote node infom02-amd64.debian.net. Sun Nov 24 16:26:56 UTC 2024 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Sun Nov 24 16:26:56 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 16:26:56 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-qJvJT7' ==================================================================================== Sat Dec 27 22:49:57 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "1 metaphlan trixie /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9 4.0.4-1" as arguments. Sat Dec 27 22:49:57 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-rz4gh7Nf" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Dec 27 22:49:58 UTC 2025 I: Downloading source for trixie/metaphlan=4.0.4-1 Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (12.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (12.8 MB/s) Download complete and in download only mode ============================================================================= Building metaphlan in trixie on amd64 on infom02-amd64 now. Date: Sat Dec 27 22:49:58 UTC 2025 Date UTC: Sat Dec 27 22:49:58 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 27 10:49:58 -12 2025 I: pbuilder-time-stamp: 1766875798 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='13b0ac0b4ec84ae48f280cd41286a4ec' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3470391' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_5AQl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 90.0 MB of archives. After unpacking 433 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.4-1 [1510 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b2 [147 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 90.0 MB in 1s (77.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21351 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../007-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../010-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../015-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../016-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package bowtie2. Preparing to unpack .../017-bowtie2_2.5.4-1_amd64.deb ... Unpacking bowtie2 (2.5.4-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../024-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... 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Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 27 22:51:22 UTC 2025. Universal Time is now: Sat Dec 27 22:51:22 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... 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Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up bowtie2 (2.5.4-1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12 creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/external_exec.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/util_fun.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/consensus_markers.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/parallelisation.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/database_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-312.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3470391 and its subdirectories I: Current time: Sat Dec 27 10:52:56 -12 2025 I: pbuilder-time-stamp: 1766875976 Sat Dec 27 22:52:56 UTC 2025 I: Signing ./b1/metaphlan_4.0.4-1_amd64.buildinfo as metaphlan_4.0.4-1_amd64.buildinfo.asc Sat Dec 27 22:52:56 UTC 2025 I: Signed ./b1/metaphlan_4.0.4-1_amd64.buildinfo as ./b1/metaphlan_4.0.4-1_amd64.buildinfo.asc Sat Dec 27 22:52:56 UTC 2025 - build #1 for metaphlan/trixie/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sat Dec 27 22:52:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-rz4gh7Nf, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:29 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:26 b2 -rw-r--r-- 1 jenkins jenkins 2047 Feb 1 2023 metaphlan_4.0.4-1.dsc -rw------- 1 jenkins jenkins 3159 Nov 24 16:26 rbuildlog.bASS0T6 /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1: total 4396 -rw-r--r-- 1 jenkins jenkins 105807 Nov 24 16:29 build.log -rw-r--r-- 1 jenkins jenkins 458252 Nov 24 16:29 metaphlan_4.0.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2047 Nov 24 16:29 metaphlan_4.0.4-1.dsc -rw-r--r-- 1 jenkins jenkins 2009128 Nov 24 16:29 metaphlan_4.0.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 7545 Nov 24 16:29 metaphlan_4.0.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8427 Nov 24 16:29 metaphlan_4.0.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1060 Nov 24 16:29 metaphlan_4.0.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1506 Nov 24 16:29 metaphlan_4.0.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 1891888 Nov 24 16:29 metaphlan_4.0.4.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2: total 0 Sun Nov 24 16:29:57 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Dec 27 10:49:58 -12 2025 I: pbuilder-time-stamp: 1766875798 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='13b0ac0b4ec84ae48f280cd41286a4ec' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3470391' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_5AQl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 90.0 MB of archives. After unpacking 433 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.4-1 [1510 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b2 [147 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 90.0 MB in 1s (77.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21351 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. 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Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 27 22:51:22 UTC 2025. Universal Time is now: Sat Dec 27 22:51:22 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. 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Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up bowtie2 (2.5.4-1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12 creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/external_exec.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/util_fun.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/consensus_markers.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/parallelisation.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/database_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-312.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3470391 and its subdirectories I: Current time: Sat Dec 27 10:52:56 -12 2025 I: pbuilder-time-stamp: 1766875976 Sun Nov 24 16:29:58 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Sun Nov 24 16:29:58 UTC 2024 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Sun Nov 24 16:29:58 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 16:29:58 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-YfjtGz' ==================================================================================== Sun Nov 24 16:29:59 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "2 metaphlan trixie /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9 4.0.4-1" as arguments. Sun Nov 24 16:29:59 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-JfTuADLK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 16:29:59 UTC 2024 I: Downloading source for trixie/metaphlan=4.0.4-1 Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (15.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'metaphlan' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/metaphlan.git Please use: git clone https://salsa.debian.org/med-team/metaphlan.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2352 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (dsc) [2047 B] Get:2 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (tar) [1892 kB] Get:3 http://deb.debian.org/debian trixie/main metaphlan 4.0.4-1 (diff) [458 kB] Fetched 2352 kB in 0s (15.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building metaphlan in trixie on amd64 on infom01-amd64 now. Date: Sun Nov 24 16:29:59 UTC 2024 Date UTC: Sun Nov 24 16:29:59 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_6hxF + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' metaphlan = debian-installer -o metaphlan = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' metaphlan = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_6hxF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2 --logfile b2/build.log metaphlan_4.0.4-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 25 06:30:00 +14 2024 I: pbuilder-time-stamp: 1732465800 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [metaphlan_4.0.4-1.dsc] I: copying [./metaphlan_4.0.4.orig.tar.gz] I: copying [./metaphlan_4.0.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Feb 1 14:15:43 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./metaphlan_4.0.4-1.dsc: no acceptable signature found dpkg-source: info: extracting metaphlan in metaphlan-4.0.4 dpkg-source: info: unpacking metaphlan_4.0.4.orig.tar.gz dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 24 16:30 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=f2462cdd233848ec9b2fcfbf164efb18 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=155087 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_6hxF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2 --logfile b2/build.log metaphlan_4.0.4-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org> Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, dh-python, pandoc, bowtie2, python3-setuptools, python3-biopython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bowtie2{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} liblerc4{a} liblua5.4-0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libnuma1{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxrender1{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} pandoc{a} pandoc-data{a} po-debconf{a} python3{a} python3-autocommand{a} python3-biopython{a} python3-cairo{a} python3-chardet{a} python3-freetype{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-rlpycairo{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} tzdata{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra krb5-locales libarchive-cpio-perl libglib2.0-data libltdl-dev libmail-sendmail-perl lynx ncbi-blast+ python-biopython-doc python3-olefile shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 90.0 MB of archives. After unpacking 433 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 bowtie2 amd64 2.5.4-1 [1510 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 46 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 60 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 74.1.2-2 [736 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20241024 [109 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libfontenc1 amd64 1:1.1.8-1+b1 [23.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 75 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.0-3+b1 [152 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 86 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 libcairo2 amd64 1.18.2-2 [535 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.82.2-2 [1501 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.0-3+b1 [2450 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 101 http://deb.debian.org/debian trixie/main amd64 liblua5.4-0 amd64 5.4.6-3+b2 [147 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.0-2+b4 [199 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.4.0-0.1+b1 [111 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.4.0-0.1+b1 [123 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 112 http://deb.debian.org/debian trixie/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-12 [4738 kB] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 10.4.0-1+b1 [522 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-cairo amd64 1.26.1-2+b1 [130 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-reportlab all 4.2.5-1 [1117 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] Fetched 90.0 MB in 1s (70.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20289 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_amd64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21351 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_amd64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sgml-base. 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Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:amd64 (1.3.14-2+b1) ... Setting up liblcms2-2:amd64 (2.16-2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libsharpyuv0:amd64 (1.4.0-0.1+b1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1+b2) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libdeflate0:amd64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:amd64 (2.1-6.1+b2) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 24 16:31:37 UTC 2024. Universal Time is now: Sun Nov 24 16:31:37 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:amd64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:amd64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libjpeg62-turbo:amd64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:amd64 (1.0.15-1) ... Setting up libimagequant0:amd64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.44-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libgfortran5:amd64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libwebp7:amd64 (1.4.0-0.1+b1) ... Setting up libnuma1:amd64 (2.0.18-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:amd64 (4.5.1+git230720-5) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... 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Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:amd64 (1.4.0-0.1+b1) ... Setting up libxext6:amd64 (2:1.3.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libharfbuzz0b:amd64 (10.0.1-1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xfonts-utils (1:7.7+7) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:amd64 (1.18.2-2) ... Setting up libraqm0:amd64 (0.10.1-1+b2) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up fonts-urw-base35 (20200910-8) ... Setting up libpython3-stdlib:amd64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-freetype (2.5.1-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up bowtie2 (2.5.4-1) ... Setting up python3-pil:amd64 (10.4.0-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-cairo (1.26.1-2+b1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-reportlab (4.2.5-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.84+dfsg-4+b1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/155087/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/155087/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running clean removing '/build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/metaphlan-4.0.4/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_build I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. Defaulting to 'README' as the title. To specify a title, use 'title' in metadata or --metadata title="...". make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build; python3.12 -m unittest discover -v /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' sys.stderr.write('\n\Downloading and uncompressing indexes\n') ---------------------------------------------------------------------- Ran 0 tests in 0.000s NO TESTS RAN create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/metaphlan/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12 creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/database_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/util_fun.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/consensus_markers.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/external_exec.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/parallelisation.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' running install_egg_info running egg_info creating MetaPhlAn.egg-info writing MetaPhlAn.egg-info/PKG-INFO writing dependency_links to MetaPhlAn.egg-info/dependency_links.txt writing entry points to MetaPhlAn.egg-info/entry_points.txt writing requirements to MetaPhlAn.egg-info/requires.txt writing top-level names to MetaPhlAn.egg-info/top_level.txt writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' reading manifest file 'MetaPhlAn.egg-info/SOURCES.txt' writing manifest file 'MetaPhlAn.egg-info/SOURCES.txt' Copying MetaPhlAn.egg-info to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/MetaPhlAn-4.0.4.egg-info Skipping SOURCES.txt running install_scripts Installing add_metadata_tree.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing extract_markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing merge_metaphlan_tables.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing metaphlan2krona.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing plot_tree_graphlan.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing read_fastx.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing run_treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sample2markers.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing sgb_to_gtdb_profile.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strain_transmission.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing strainphlan script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin Installing treeshrink.py script to /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/bin dh_installdocs -O--buildsystem=pybuild debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_installchangelogs CHANGELOG.md make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides cmseq. Please add package that provides it to Build-Depends or add "cmseq python3-cmseq" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides hclust2. Please add package that provides it to Build-Depends or add "hclust2 python3-hclust2" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides phylophlan. Please add package that provides it to Build-Depends or add "phylophlan python3-phylophlan" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/metaphlan-4.0.4' dh_fixperms find debian/metaphlan -name "*.txt" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/metaphlan-4.0.4' dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'metaphlan' in '../metaphlan_4.0.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../metaphlan_4.0.4-1_amd64.buildinfo dpkg-genchanges --build=binary -O../metaphlan_4.0.4-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/155087/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/155087/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/155087 and its subdirectories I: Current time: Mon Nov 25 06:33:24 +14 2024 I: pbuilder-time-stamp: 1732466004 + false + set +x Sun Nov 24 16:33:24 UTC 2024 I: Signing ./b2/metaphlan_4.0.4-1_amd64.buildinfo as metaphlan_4.0.4-1_amd64.buildinfo.asc Sun Nov 24 16:33:24 UTC 2024 I: Signed ./b2/metaphlan_4.0.4-1_amd64.buildinfo as ./b2/metaphlan_4.0.4-1_amd64.buildinfo.asc Sun Nov 24 16:33:24 UTC 2024 - build #2 for metaphlan/trixie/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sun Nov 24 16:33:24 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-JfTuADLK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9: total 124 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:29 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 16:33 b2 -rw-r--r-- 1 jenkins jenkins 2047 Feb 1 2023 metaphlan_4.0.4-1.dsc -rw------- 1 jenkins jenkins 109255 Nov 24 16:29 rbuildlog.bASS0T6 /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1: total 4412 -rw-r--r-- 1 jenkins jenkins 105807 Nov 24 16:29 build.log -rw-r--r-- 1 jenkins jenkins 458252 Nov 24 16:29 metaphlan_4.0.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2047 Nov 24 16:29 metaphlan_4.0.4-1.dsc -rw-r--r-- 1 jenkins jenkins 2009128 Nov 24 16:29 metaphlan_4.0.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 7545 Nov 24 16:29 metaphlan_4.0.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8427 Nov 24 16:29 metaphlan_4.0.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1060 Nov 24 16:29 metaphlan_4.0.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1506 Nov 24 16:29 metaphlan_4.0.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 1891888 Nov 24 16:29 metaphlan_4.0.4.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2: total 4400 -rw-r--r-- 1 jenkins jenkins 107726 Nov 24 16:33 build.log -rw-r--r-- 1 jenkins jenkins 458252 Nov 24 16:33 metaphlan_4.0.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2047 Nov 24 16:33 metaphlan_4.0.4-1.dsc -rw-r--r-- 1 jenkins jenkins 2009128 Nov 24 16:33 metaphlan_4.0.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 7542 Nov 24 16:33 metaphlan_4.0.4-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8424 Nov 24 16:33 metaphlan_4.0.4-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1060 Nov 24 16:33 metaphlan_4.0.4-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1506 Nov 24 16:33 metaphlan_4.0.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 1891888 Nov 24 16:33 metaphlan_4.0.4.orig.tar.gz Sun Nov 24 16:33:25 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. Sun Nov 24 16:33:25 UTC 2024 I: metaphlan_4.0.4-1_amd64.changes: Format: 1.8 Date: Wed, 01 Feb 2023 15:09:53 +0100 Source: metaphlan Binary: metaphlan Architecture: all Version: 4.0.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Changed-By: Andreas Tille <tille@debian.org> Description: metaphlan - Metagenomic Phylogenetic Analysis Changes: metaphlan (4.0.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 2dccef24780897b5c50f26505553ee26d53ba714 2009128 metaphlan_4.0.4-1_all.deb b8d477922fe71fafa0ed975b3e7340182262ddc6 7545 metaphlan_4.0.4-1_amd64.buildinfo Checksums-Sha256: 07e06c70b030c8161419fede8fcec7113c87de5c2e00d78bcf7305028ed43ec5 2009128 metaphlan_4.0.4-1_all.deb 78dd9ed4dabd6043b3e3b808f5bf35b5c0914bfa056f50670811a23408f3ba5f 7545 metaphlan_4.0.4-1_amd64.buildinfo Files: 62c316f7a72351718403f29a66e2a914 2009128 science optional metaphlan_4.0.4-1_all.deb 3066ec64c241e75a5c395f84d0d740ec 7545 science optional metaphlan_4.0.4-1_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/metaphlan_4.0.4-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/metaphlan_4.0.4-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/metaphlan_4.0.4-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/metaphlan_4.0.4-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/metaphlan_4.0.4-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/metaphlan_4.0.4-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 16:29:57.479020261 +0000 +++ b2/build.log 2024-11-24 16:33:24.873634933 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Dec 27 10:49:58 -12 2025 -I: pbuilder-time-stamp: 1766875798 +I: Current time: Mon Nov 25 06:30:00 +14 2024 +I: pbuilder-time-stamp: 1732465800 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,51 +26,83 @@ dpkg-source: info: unpacking metaphlan_4.0.4-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 24 16:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='13b0ac0b4ec84ae48f280cd41286a4ec' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3470391' - PS1='# ' - PS2='> ' + INVOCATION_ID=f2462cdd233848ec9b2fcfbf164efb18 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=155087 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_5AQl --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1 --logfile b1/build.log metaphlan_4.0.4-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/pbuilderrc_6hxF --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2 --logfile b2/build.log metaphlan_4.0.4-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3470391/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -240,7 +272,7 @@ Get: 120 http://deb.debian.org/debian trixie/main amd64 xml-core all 0.19 [20.1 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-biopython amd64 1.84+dfsg-4+b1 [1651 kB] -Fetched 90.0 MB in 1s (77.5 MB/s) +Fetched 90.0 MB in 1s (70.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -657,8 +689,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Dec 27 22:51:22 UTC 2025. -Universal Time is now: Sat Dec 27 22:51:22 UTC 2025. +Local time is now: Sun Nov 24 16:31:37 UTC 2024. +Universal Time is now: Sun Nov 24 16:31:37 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b1) ... @@ -763,7 +795,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/metaphlan-4.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../metaphlan_4.0.4-1_source.changes dpkg-buildpackage: info: source package metaphlan dpkg-buildpackage: info: source version 4.0.4-1 dpkg-buildpackage: info: source distribution unstable @@ -799,107 +835,107 @@ running build_py creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan -copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan copying metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan +copying metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases copying metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases -copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils -copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils copying metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils +copying metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink copying metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts copying metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts -copying metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts +copying metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts -copying metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts +copying metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS -copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS -copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS +copying metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS +copying metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS copying metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R -copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R +creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo +copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo +creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html +copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html +copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data copying metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data -creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta +creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc +creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R +copying metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help -copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help +copying metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help copying metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help -creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo -copying metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo -creating /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html -copying metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html -copying metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html +copying metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help pandoc -s --from markdown --to html README.md | \ sed -e 's#"https://bitbucket.org/repo/r[Mm]969[Kk]/images#"images#' > README.html [WARNING] This document format requires a nonempty <title> element. @@ -942,152 +978,152 @@ creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12 creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/util_fun.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/pyphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/run_treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/INDEX -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/CITATION -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS -creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2 -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/parallelisation.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/read_fastx.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/database_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sgb_to_gtdb_profile.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/extract_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/strain_transmission.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_d.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/R_scripts +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/util_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/decompose_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filemgr.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/alignment.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/filter_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/Tree_extend.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/tree_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/scripts/sequence_lib.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/treeshrink/treeshrink.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/external_exec.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/metaphlan2krona.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/phylophlan_controller.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/merge_metaphlan_tables.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/add_metadata_tree.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_bug.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/sample2markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/calculate_diversity.R -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/consensus_markers.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/external_exec.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/database_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/util_fun.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/consensus_markers.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/external_exec.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/parallelisation.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/database_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/__pycache__/phylophlan_controller.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__pycache__ -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/plot_tree_graphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils -copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils +creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan_databases/README.txt -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan_databases +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/strainphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/metaphlan.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan +copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__init__.py -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan creating /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ copying /build/reproducible-path/metaphlan-4.0.4/.pybuild/cpython3_3.12/build/metaphlan/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__pycache__ -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/util_fun.py to util_fun.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/pyphlan.py to pyphlan.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py to util_lib.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py to optimal_filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py to decompose_lib.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py to alignment.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py to filter_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py to Tree_extend.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py to filemgr.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py to run_treeshrink.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py to tree_lib.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py to sequence_lib.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/treeshrink/treeshrink.py to treeshrink.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/parallelisation.py to parallelisation.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/read_fastx.py to read_fastx.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/database_controller.py to database_controller.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py to sgb_to_gtdb_profile.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/extract_markers.py to extract_markers.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/strain_transmission.py to strain_transmission.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/__init__.py to __init__.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/external_exec.py to external_exec.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/metaphlan2krona.py to metaphlan2krona.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/phylophlan_controller.py to phylophlan_controller.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/merge_metaphlan_tables.py to merge_metaphlan_tables.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/add_metadata_tree.py to add_metadata_tree.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/consensus_markers.py to consensus_markers.cpython-312.pyc -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_tree_graphlan.py to plot_tree_graphlan.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/plot_bug.py to plot_bug.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/utils/sample2markers.py to sample2markers.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/strainphlan.py to strainphlan.cpython-312.pyc +byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-312.pyc byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/__init__.py to __init__.cpython-312.pyc /usr/lib/python3.12/dist-packages/metaphlan/__init__.py:150: SyntaxWarning: invalid escape sequence '\D' -byte-compiling /build/reproducible-path/metaphlan-4.0.4/debian/metaphlan/usr/lib/python3.12/dist-packages/metaphlan/metaphlan.py to metaphlan.cpython-312.pyc running install_egg_info running egg_info creating MetaPhlAn.egg-info @@ -1149,12 +1185,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/155087/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3470391 and its subdirectories -I: Current time: Sat Dec 27 10:52:56 -12 2025 -I: pbuilder-time-stamp: 1766875976 +I: removing directory /srv/workspace/pbuilder/155087 and its subdirectories +I: Current time: Mon Nov 25 06:33:24 +14 2024 +I: pbuilder-time-stamp: 1732466004 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/metaphlan_4.0.4-1.diff: 92.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/metaphlan_4.0.4-1.diff.gz b2/build.log: 86.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 87.3% -- replaced with stdout Sun Nov 24 16:33:27 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_metaphlan_trixie_amd64_1732466007 + touch /var/log/reproducible-builds/diffoscope_stamp_metaphlan_trixie_amd64_1732466007 + RESULT=0 + systemd-run '--description=diffoscope on metaphlan/4.0.4-1 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_34-36828 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9 --run-session -c jenkins-reproducible-trixie-diffoscope-afa62dce-0fb2-48a1-ae01-a9ce8e549ad2 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/dbd-tmp-YUEjR2b ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1/metaphlan_4.0.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2/metaphlan_4.0.4-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_34-36828.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/metaphlan_4.0.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b1/metaphlan_4.0.4-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Qr1yi3y9/b2/metaphlan_4.0.4-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.774s) 0.774s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.068s) 0.068s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.122s CPU time consumed: 983ms _ _ _ _ __ ___ ___| |_ __ _ _ __ | |__ | | __ _ _ __ | '_ ` _ \ / _ \ __/ _` | '_ \| '_ \| |/ _` | '_ \ | | | | | | __/ || (_| | |_) | | | | | (_| | | | | |_| |_| |_|\___|\__\__,_| .__/|_| |_|_|\__,_|_| |_| |_| Sun Nov 24 16:33:29 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 16:33:29 UTC 2024 I: metaphlan from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 16:33:30] INFO: Starting at 2024-11-24 16:33:30.205346 [2024-11-24 16:33:30] INFO: Generating the pages of 1 package(s) [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/metaphlan didn't produce a buildlog, even though it has been built. [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:30] INFO: Finished at 2024-11-24 16:33:30.588753, took: 0:00:00.383413 Sun Nov 24 16:33:30 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/metaphlan.html Sun Nov 24 16:33:30 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 16:33:30 UTC 2024 I: Submitting 12K b1/metaphlan_4.0.4-1_amd64.buildinfo.asc https://buildinfo.debian.net/b8d477922fe71fafa0ed975b3e7340182262ddc6/metaphlan_4.0.4-1_all Sun Nov 24 16:33:31 UTC 2024 I: Submitting 12K b2/metaphlan_4.0.4-1_amd64.buildinfo.asc https://buildinfo.debian.net/24cbdef4545d0d92f40fe7bd18438c534047d6d4/metaphlan_4.0.4-1_all Sun Nov 24 16:33:32 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 16:33:32 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 16:33:32 UTC 2024 I: Removing signed metaphlan_4.0.4-1_amd64.buildinfo.asc files: removed './b1/metaphlan_4.0.4-1_amd64.buildinfo.asc' removed './b2/metaphlan_4.0.4-1_amd64.buildinfo.asc' 1732466012 amd64 trixie metaphlan Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/metaphlan_4.0.4-1.rbuild.log: 85.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/metaphlan_4.0.4-1.rbuild.log.gz [2024-11-24 16:33:32] INFO: Starting at 2024-11-24 16:33:32.832743 [2024-11-24 16:33:32] INFO: Generating the pages of 1 package(s) [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/metaphlan_4.0.4-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/metaphlan_4.0.4-1.diff.gz is missing [2024-11-24 16:33:33] INFO: Finished at 2024-11-24 16:33:33.248631, took: 0:00:00.415894 All cleanup done. Sun Nov 24 16:33:33 UTC 2024 - total duration: 0h 6m 42s. Sun Nov 24 16:33:33 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-f057LB6v, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 45.494s CPU time consumed: 8.579s