Running as unit: rb-build-amd64_34-57545.service ==================================================================================== Thu Apr 24 15:21:15 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_34) on jenkins, called using "infom02-amd64 infom01-amd64" as arguments. Thu Apr 24 15:21:15 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-AwufI1qq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 15:21:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Thu Apr 24 15:21:15 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-7KxaZT' Thu Apr 24 15:21:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Apr 24 15:21:16 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-17sZv0' ok, let's check if barrnap is building anywhere yet… ok, barrnap is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of barrnap in trixie on amd64 on jenkins now. 1st build will be done on infom02-amd64.debian.net. 2nd build will be done on infom01-amd64.debian.net. ============================================================================= Thu Apr 24 15:21:21 UTC 2025 I: starting to build barrnap/trixie/amd64 on jenkins on '2025-04-24 15:21' Thu Apr 24 15:21:21 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_34/57545/console.log 1745508081 amd64 trixie barrnap Thu Apr 24 15:21:21 UTC 2025 I: Downloading source for trixie/barrnap=0.9+dfsg-4 --2025-04-24 15:21:21-- http://deb.debian.org/debian/pool/main/b/barrnap/barrnap_0.9%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2002 (2.0K) [text/prs.lines.tag] Saving to: ‘barrnap_0.9+dfsg-4.dsc’ 0K . 100% 315M=0s 2025-04-24 15:21:21 (315 MB/s) - ‘barrnap_0.9+dfsg-4.dsc’ saved [2002/2002] --2025-04-24 15:21:21-- http://deb.debian.org/debian/pool/main/b/barrnap/barrnap_0.9%2bdfsg-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2002 (2.0K) [text/prs.lines.tag] Saving to: ‘barrnap_0.9+dfsg-4.dsc’ 0K . 100% 315M=0s 2025-04-24 15:21:21 (315 MB/s) - ‘barrnap_0.9+dfsg-4.dsc’ saved [2002/2002] Thu Apr 24 15:21:21 UTC 2025 I: barrnap_0.9+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: http://www.vicbioinformatics.com/software.barrnap.shtml Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/barrnap Vcs-Git: https://salsa.debian.org/med-team/barrnap.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools Package-List: barrnap deb science optional arch=all Checksums-Sha1: c90352d95316d96f016540d1540ec198ecf3beb2 5783936 barrnap_0.9+dfsg.orig.tar.xz f81f6b438cf54cc5dbf4a2e1a69e6ddb0b311e01 702800 barrnap_0.9+dfsg-4.debian.tar.xz Checksums-Sha256: b780182b0154cf44915279bb57c1207b9b0aeb24e779fcd6de1a2b6779e89cc8 5783936 barrnap_0.9+dfsg.orig.tar.xz a6d6b925c2a6667433cc70b76e59e257b7d2792bbff541b68f03c57ae1f715d4 702800 barrnap_0.9+dfsg-4.debian.tar.xz Files: 944eaecec9c2fe9bdf344f6f33071ea6 5783936 barrnap_0.9+dfsg.orig.tar.xz d2ba201aafebc15283958e23556cb1b8 702800 barrnap_0.9+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUFyCcACgkQPCZ2P2xn 5uJhmhAAjWrsPjrGxxym404LHnL0+iVEXONqACrAt7NuhhmUsXo94ljMx38pLQ8V OBjQ5VoKM14jJOs30Cb2+lBDsz9GzLATNJwJFbbi9ZbYSj21vw7dgsWsR9TxhNYn pfw4ggRFRHFnWa1GmG9+1ULdV3pnQqGZsEd8BEwXvvCtDtQILvP/6xRkFP6r9Mus SaI8SboiNsTkO8NNtI7ZpFnmWffleHeU4n3WXwedesEfToNSmeE0RJrZqlIS0JxW eeSfAS32JHeiQPokGBvO34GAX2ZvvQ8Lg0aZiqyu1VykF5kJE9QRA4KugtFvTfTt AVIP0Ll/FlIErskzXhFsCkvRB6jeERQYR0MxcdB+jknKNNw8j3jF8k3XPrrlGD+d B9qX2ZZQzZSjhXTbzUp7ZcUnu47Qpqx3CVvFx6BnhZ9LMghroSxlbO4JMsdA+Iag SCxc5cTdl0gusXCK7HRICPSa+w56pHgXBpZLtRIQOZPulrkXtvr7BFgHIempbc5B 1Pd8oM3OBZhCeBr2oM/hp5CVDM6Ci3CDn8cSldkIlhd9vBUjrq1O/1CnFlUXvIWs DzRmNZ3GFfkYqwLmFGCQOzZf0XskxV/XkckUuS41YHwpB1787ZlI1/RrJWYQtMvV SWC5hLNCMcecE2iOfB0o0LF/XI/rXM1a0mWdueay5sESP8gUBPo= =ekhv -----END PGP SIGNATURE----- Thu Apr 24 15:21:21 UTC 2025 I: Checking whether the package is not for us Thu Apr 24 15:21:21 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Thu Apr 24 15:21:21 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Thu Apr 24 15:21:21 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Thu Apr 24 15:21:21 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-1Ov8tC' ==================================================================================== Wed May 27 21:44:22 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "1 barrnap trixie /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch 0.9+dfsg-4" as arguments. Wed May 27 21:44:22 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-jrBlAPKY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed May 27 21:44:22 UTC 2026 I: Downloading source for trixie/barrnap=0.9+dfsg-4 Reading package lists... NOTICE: 'barrnap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/barrnap.git Please use: git clone https://salsa.debian.org/med-team/barrnap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6489 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (dsc) [2002 B] Get:2 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (tar) [5784 kB] Get:3 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (diff) [703 kB] Fetched 6489 kB in 1s (7954 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'barrnap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/barrnap.git Please use: git clone https://salsa.debian.org/med-team/barrnap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6489 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (dsc) [2002 B] Get:2 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (tar) [5784 kB] Get:3 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (diff) [703 kB] Fetched 6489 kB in 1s (7954 kB/s) Download complete and in download only mode ============================================================================= Building barrnap in trixie on amd64 on infom02-amd64 now. Date: Wed May 27 21:44:23 UTC 2026 Date UTC: Wed May 27 21:44:23 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 09:44:23 -12 2026 I: pbuilder-time-stamp: 1779918263 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barrnap_0.9+dfsg-4.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update_dbs dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4b695007abe741a592ba3b1e971663df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2413814' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_MyV9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1 --logfile b1/build.log barrnap_0.9+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hmmer{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdivsufsort3{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After unpacking 52.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 lua5.1 amd64 5.1.5-11 [103 kB] Fetched 13.3 MB in 0s (37.4 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../25-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../31-libdivsufsort3_2.0.1-6+b1_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-6+b1) ... Selecting previously unselected package hmmer. Preparing to unpack .../32-hmmer_3.4+dfsg-2_amd64.deb ... Unpacking hmmer (3.4+dfsg-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../33-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package lua5.1. Preparing to unpack .../34-lua5.1_5.1.5-11_amd64.deb ... Unpacking lua5.1 (5.1.5-11) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up hmmer (3.4+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up lua5.1 (5.1.5-11) ... update-alternatives: using /usr/bin/lua5.1 to provide /usr/bin/lua (lua-interpreter) in auto mode update-alternatives: using /usr/bin/luac5.1 to provide /usr/bin/luac (lua-compiler) in auto mode Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 0.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' rm -f *~ core foo DEADJOE make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' ./bin/barrnap examples/small.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /build/reproducible-path/barrnap-0.9+dfsg/bin/../binaries/linux to end of PATH [barrnap] Checking for dependencies: [barrnap] Found nhmmer - /usr/bin/nhmmer [barrnap] Found bedtools - /usr/bin/bedtools [barrnap] Will use 1 threads [barrnap] Setting evalue cutoff to 1e-06 [barrnap] Will tag genes < 0.8 of expected length. [barrnap] Will reject genes < 0.25 of expected length. [barrnap] Using database: /build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm [barrnap] Scanning examples/small.fna for bac rRNA genes... please wait [barrnap] Command: nhmmer --cpu 1 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm' 'examples/small.fna' [barrnap] Found: 16S_rRNA P.marinus L=1480/1585 353314..354793 + 16S ribosomal RNA [barrnap] Found: 23S_rRNA P.marinus L=2871/3232 355464..358334 + 23S ribosomal RNA [barrnap] Found: 5S_rRNA P.marinus L=113/119 358433..358545 + 5S ribosomal RNA [barrnap] Found 3 ribosomal RNA features. [barrnap] Sorting features and outputting GFF3... [barrnap] Done. ##gff-version 3 P.marinus barrnap:0.9 rRNA 353314 354793 0 + . Name=16S_rRNA;product=16S ribosomal RNA P.marinus barrnap:0.9 rRNA 355464 358334 0 + . Name=23S_rRNA;product=23S ribosomal RNA P.marinus barrnap:0.9 rRNA 358433 358545 1.4e-12 + . Name=5S_rRNA;product=5S ribosomal RNA make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package barrnap: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'barrnap' in '../barrnap_0.9+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../barrnap_0.9+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../barrnap_0.9+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2413814 and its subdirectories I: Current time: Wed May 27 09:45:25 -12 2026 I: pbuilder-time-stamp: 1779918325 Wed May 27 21:45:25 UTC 2026 I: Signing ./b1/barrnap_0.9+dfsg-4_amd64.buildinfo as barrnap_0.9+dfsg-4_amd64.buildinfo.asc Wed May 27 21:45:25 UTC 2026 I: Signed ./b1/barrnap_0.9+dfsg-4_amd64.buildinfo as ./b1/barrnap_0.9+dfsg-4_amd64.buildinfo.asc Wed May 27 21:45:25 UTC 2026 - build #1 for barrnap/trixie/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Wed May 27 21:45:25 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-jrBlAPKY, removing. /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 15:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 15:21 b2 -rw-r--r-- 1 jenkins jenkins 2002 Sep 16 2023 barrnap_0.9+dfsg-4.dsc -rw------- 1 jenkins jenkins 3117 Apr 24 15:21 rbuildlog.aO65Ep1 /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1: total 1256 -rw-r--r-- 1 jenkins jenkins 702800 Apr 24 15:22 barrnap_0.9+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2002 Apr 24 15:22 barrnap_0.9+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 525908 Apr 24 15:22 barrnap_0.9+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 4757 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5639 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1471 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1661 Apr 24 15:22 barrnap_0.9+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 22196 Apr 24 15:22 build.log /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2: total 0 Thu Apr 24 15:22:25 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 09:44:23 -12 2026 I: pbuilder-time-stamp: 1779918263 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barrnap_0.9+dfsg-4.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update_dbs dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='4b695007abe741a592ba3b1e971663df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2413814' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_MyV9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1 --logfile b1/build.log barrnap_0.9+dfsg-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hmmer{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdivsufsort3{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After unpacking 52.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 lua5.1 amd64 5.1.5-11 [103 kB] Fetched 13.3 MB in 0s (37.4 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../25-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../31-libdivsufsort3_2.0.1-6+b1_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-6+b1) ... Selecting previously unselected package hmmer. Preparing to unpack .../32-hmmer_3.4+dfsg-2_amd64.deb ... Unpacking hmmer (3.4+dfsg-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../33-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package lua5.1. Preparing to unpack .../34-lua5.1_5.1.5-11_amd64.deb ... Unpacking lua5.1 (5.1.5-11) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up hmmer (3.4+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up lua5.1 (5.1.5-11) ... update-alternatives: using /usr/bin/lua5.1 to provide /usr/bin/lua (lua-interpreter) in auto mode update-alternatives: using /usr/bin/luac5.1 to provide /usr/bin/luac (lua-compiler) in auto mode Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 0.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' rm -f *~ core foo DEADJOE make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' ./bin/barrnap examples/small.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /build/reproducible-path/barrnap-0.9+dfsg/bin/../binaries/linux to end of PATH [barrnap] Checking for dependencies: [barrnap] Found nhmmer - /usr/bin/nhmmer [barrnap] Found bedtools - /usr/bin/bedtools [barrnap] Will use 1 threads [barrnap] Setting evalue cutoff to 1e-06 [barrnap] Will tag genes < 0.8 of expected length. [barrnap] Will reject genes < 0.25 of expected length. [barrnap] Using database: /build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm [barrnap] Scanning examples/small.fna for bac rRNA genes... please wait [barrnap] Command: nhmmer --cpu 1 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm' 'examples/small.fna' [barrnap] Found: 16S_rRNA P.marinus L=1480/1585 353314..354793 + 16S ribosomal RNA [barrnap] Found: 23S_rRNA P.marinus L=2871/3232 355464..358334 + 23S ribosomal RNA [barrnap] Found: 5S_rRNA P.marinus L=113/119 358433..358545 + 5S ribosomal RNA [barrnap] Found 3 ribosomal RNA features. [barrnap] Sorting features and outputting GFF3... [barrnap] Done. ##gff-version 3 P.marinus barrnap:0.9 rRNA 353314 354793 0 + . Name=16S_rRNA;product=16S ribosomal RNA P.marinus barrnap:0.9 rRNA 355464 358334 0 + . Name=23S_rRNA;product=23S ribosomal RNA P.marinus barrnap:0.9 rRNA 358433 358545 1.4e-12 + . Name=5S_rRNA;product=5S ribosomal RNA make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package barrnap: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'barrnap' in '../barrnap_0.9+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../barrnap_0.9+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../barrnap_0.9+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2413814 and its subdirectories I: Current time: Wed May 27 09:45:25 -12 2026 I: pbuilder-time-stamp: 1779918325 Thu Apr 24 15:22:26 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Thu Apr 24 15:22:26 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Thu Apr 24 15:22:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Apr 24 15:22:26 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-mXo2Y0' ==================================================================================== Thu Apr 24 15:22:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "2 barrnap trixie /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch 0.9+dfsg-4" as arguments. Thu Apr 24 15:22:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-1RPQV2aF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 15:22:27 UTC 2025 I: Downloading source for trixie/barrnap=0.9+dfsg-4 Reading package lists... NOTICE: 'barrnap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/barrnap.git Please use: git clone https://salsa.debian.org/med-team/barrnap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6489 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (dsc) [2002 B] Get:2 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (tar) [5784 kB] Get:3 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (diff) [703 kB] Fetched 6489 kB in 0s (45.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'barrnap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/barrnap.git Please use: git clone https://salsa.debian.org/med-team/barrnap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 6489 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (dsc) [2002 B] Get:2 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (tar) [5784 kB] Get:3 http://deb.debian.org/debian trixie/main barrnap 0.9+dfsg-4 (diff) [703 kB] Fetched 6489 kB in 0s (45.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building barrnap in trixie on amd64 on infom01-amd64 now. Date: Thu Apr 24 15:22:27 UTC 2025 Date UTC: Thu Apr 24 15:22:27 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_Zxt6 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' barrnap = debian-installer -o barrnap = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' barrnap = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_Zxt6 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2 --logfile b2/build.log barrnap_0.9+dfsg-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 25 05:22:28 +14 2025 I: pbuilder-time-stamp: 1745508148 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [barrnap_0.9+dfsg-4.dsc] I: copying [./barrnap_0.9+dfsg.orig.tar.xz] I: copying [./barrnap_0.9+dfsg-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./barrnap_0.9+dfsg-4.dsc: unsupported subcommand dpkg-source: info: extracting barrnap in barrnap-0.9+dfsg dpkg-source: info: unpacking barrnap_0.9+dfsg.orig.tar.xz dpkg-source: info: unpacking barrnap_0.9+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update_dbs dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 24 15:22 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=80a4cb99c3f44b31a1ae534ee21ed0f6 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3813015 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_Zxt6 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2 --logfile b2/build.log barrnap_0.9+dfsg-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), hmmer, lua5.1, bedtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on hmmer; however: Package hmmer is not installed. pbuilder-satisfydepends-dummy depends on lua5.1; however: Package lua5.1 is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hmmer{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libdivsufsort3{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} lua5.1{a} m4{a} man-db{a} po-debconf{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After unpacking 52.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 bedtools amd64 2.31.1+dfsg-2 [678 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 24 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 lua5.1 amd64 5.1.5-11 [103 kB] Fetched 13.3 MB in 0s (73.1 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_amd64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../09-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package bedtools. Preparing to unpack .../16-bedtools_2.31.1+dfsg-2_amd64.deb ... Unpacking bedtools (2.31.1+dfsg-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../23-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../25-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../26-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../31-libdivsufsort3_2.0.1-6+b1_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-6+b1) ... Selecting previously unselected package hmmer. Preparing to unpack .../32-hmmer_3.4+dfsg-2_amd64.deb ... Unpacking hmmer (3.4+dfsg-2) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../33-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package lua5.1. Preparing to unpack .../34-lua5.1_5.1.5-11_amd64.deb ... Unpacking lua5.1 (5.1.5-11) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up bedtools (2.31.1+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up hmmer (3.4+dfsg-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up lua5.1 (5.1.5-11) ... update-alternatives: using /usr/bin/lua5.1 to provide /usr/bin/lua (lua-interpreter) in auto mode update-alternatives: using /usr/bin/luac5.1 to provide /usr/bin/luac (lua-compiler) in auto mode Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 0.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' rm -f *~ core foo DEADJOE make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' ./bin/barrnap examples/small.fna [barrnap] This is barrnap 0.9 [barrnap] Written by Torsten Seemann [barrnap] Obtained from https://github.com/tseemann/barrnap [barrnap] Detected operating system: linux [barrnap] Adding /build/reproducible-path/barrnap-0.9+dfsg/bin/../binaries/linux to end of PATH [barrnap] Checking for dependencies: [barrnap] Found nhmmer - /usr/bin/nhmmer [barrnap] Found bedtools - /usr/bin/bedtools [barrnap] Will use 1 threads [barrnap] Setting evalue cutoff to 1e-06 [barrnap] Will tag genes < 0.8 of expected length. [barrnap] Will reject genes < 0.25 of expected length. [barrnap] Using database: /build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm [barrnap] Scanning examples/small.fna for bac rRNA genes... please wait [barrnap] Command: nhmmer --cpu 1 -E 1e-06 --w_length 3878 -o /dev/null --tblout /dev/stdout '/build/reproducible-path/barrnap-0.9+dfsg/bin/../db/bac.hmm' 'examples/small.fna' [barrnap] Found: 16S_rRNA P.marinus L=1480/1585 353314..354793 + 16S ribosomal RNA [barrnap] Found: 23S_rRNA P.marinus L=2871/3232 355464..358334 + 23S ribosomal RNA [barrnap] Found: 5S_rRNA P.marinus L=113/119 358433..358545 + 5S ribosomal RNA [barrnap] Found 3 ribosomal RNA features. [barrnap] Sorting features and outputting GFF3... [barrnap] Done. ##gff-version 3 P.marinus barrnap:0.9 rRNA 353314 354793 0 + . Name=16S_rRNA;product=16S ribosomal RNA P.marinus barrnap:0.9 rRNA 355464 358334 0 + . Name=23S_rRNA;product=23S ribosomal RNA P.marinus barrnap:0.9 rRNA 358433 358545 1.4e-12 + . Name=5S_rRNA;product=5S ribosomal RNA make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/barrnap-0.9+dfsg' # pass make[1]: Leaving directory '/build/reproducible-path/barrnap-0.9+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package barrnap: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'barrnap' in '../barrnap_0.9+dfsg-4_all.deb'. dpkg-genbuildinfo --build=binary -O../barrnap_0.9+dfsg-4_amd64.buildinfo dpkg-genchanges --build=binary -O../barrnap_0.9+dfsg-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3813015 and its subdirectories I: Current time: Fri Apr 25 05:23:02 +14 2025 I: pbuilder-time-stamp: 1745508182 + false + set +x Thu Apr 24 15:23:02 UTC 2025 I: Signing ./b2/barrnap_0.9+dfsg-4_amd64.buildinfo as barrnap_0.9+dfsg-4_amd64.buildinfo.asc Thu Apr 24 15:23:02 UTC 2025 I: Signed ./b2/barrnap_0.9+dfsg-4_amd64.buildinfo as ./b2/barrnap_0.9+dfsg-4_amd64.buildinfo.asc Thu Apr 24 15:23:02 UTC 2025 - build #2 for barrnap/trixie/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Thu Apr 24 15:23:02 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-1RPQV2aF, removing. /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 15:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 15:23 b2 -rw-r--r-- 1 jenkins jenkins 2002 Sep 16 2023 barrnap_0.9+dfsg-4.dsc -rw------- 1 jenkins jenkins 25602 Apr 24 15:22 rbuildlog.aO65Ep1 /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1: total 1264 -rw-r--r-- 1 jenkins jenkins 702800 Apr 24 15:22 barrnap_0.9+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2002 Apr 24 15:22 barrnap_0.9+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 525908 Apr 24 15:22 barrnap_0.9+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 4757 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5639 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1471 Apr 24 15:22 barrnap_0.9+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1661 Apr 24 15:22 barrnap_0.9+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 22196 Apr 24 15:22 build.log /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2: total 1256 -rw-r--r-- 1 jenkins jenkins 702800 Apr 24 15:23 barrnap_0.9+dfsg-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2002 Apr 24 15:23 barrnap_0.9+dfsg-4.dsc -rw-r--r-- 1 jenkins jenkins 525908 Apr 24 15:23 barrnap_0.9+dfsg-4_all.deb -rw-r--r-- 1 jenkins jenkins 4752 Apr 24 15:23 barrnap_0.9+dfsg-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5634 Apr 24 15:23 barrnap_0.9+dfsg-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1471 Apr 24 15:23 barrnap_0.9+dfsg-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1661 Apr 24 15:23 barrnap_0.9+dfsg-4_source.changes -rw-r--r-- 1 jenkins jenkins 24123 Apr 24 15:23 build.log Thu Apr 24 15:23:02 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Thu Apr 24 15:23:03 UTC 2025 I: barrnap_0.9+dfsg-4_amd64.changes: Format: 1.8 Date: Sat, 16 Sep 2023 16:36:40 +0200 Source: barrnap Binary: barrnap Architecture: all Version: 0.9+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: barrnap - rapid ribosomal RNA prediction Changes: barrnap (0.9+dfsg-4) unstable; urgency=medium . * Team upload. * d/patches/use_both_hmmsets: not needed since before 0.7+dfsg-1 * d/tests/control: hmmer is now available on arm64/armhf; test there as well. * d/patches/update_dbs: refresh the databases using the latest SILVA database which is DFSG compliant (CC-BY-4.0). * d/copyright: document the provenance and licensing for d/patches/update_dbs; update homepage URL * d/patches/use_debian_dirs: document author, no need to forward upstream Checksums-Sha1: c447d819ce3e3e7c18df7c9ec9c1cae3d57a91bb 525908 barrnap_0.9+dfsg-4_all.deb 47d7ca3fdaa4780caa65a277e17bad462497307c 4757 barrnap_0.9+dfsg-4_amd64.buildinfo Checksums-Sha256: 6f1c68a498e4a407e0eb99b619760299741120b3856a6b60d6c307ac92564034 525908 barrnap_0.9+dfsg-4_all.deb 2103b8265474b04f9aa2524b7dd4f98e6d3a9cb0c0d9c0bf6ada2bc54a804b8b 4757 barrnap_0.9+dfsg-4_amd64.buildinfo Files: 5c40cf562d19381e96be68d0bcdddeaf 525908 science optional barrnap_0.9+dfsg-4_all.deb 369d74e5ac9ac8da6b41ddda002e8da0 4757 science optional barrnap_0.9+dfsg-4_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/barrnap_0.9+dfsg-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/barrnap_0.9+dfsg-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/barrnap_0.9+dfsg-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/barrnap_0.9+dfsg-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/barrnap_0.9+dfsg-4_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/barrnap_0.9+dfsg-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-24 15:22:25.886229828 +0000 +++ b2/build.log 2025-04-24 15:23:02.889445606 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed May 27 09:44:23 -12 2026 -I: pbuilder-time-stamp: 1779918263 +I: Current time: Fri Apr 25 05:22:28 +14 2025 +I: pbuilder-time-stamp: 1745508148 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,51 +25,83 @@ dpkg-source: info: applying use_debian_dirs I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 24 15:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='4b695007abe741a592ba3b1e971663df' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2413814' - PS1='# ' - PS2='> ' + INVOCATION_ID=80a4cb99c3f44b31a1ae534ee21ed0f6 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3813015 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_MyV9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1 --logfile b1/build.log barrnap_0.9+dfsg-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/pbuilderrc_Zxt6 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2 --logfile b2/build.log barrnap_0.9+dfsg-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2413814/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -146,7 +178,7 @@ Get: 33 http://deb.debian.org/debian trixie/main amd64 hmmer amd64 3.4+dfsg-2 [1062 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 lua5.1 amd64 5.1.5-11 [103 kB] -Fetched 13.3 MB in 0s (37.4 MB/s) +Fetched 13.3 MB in 0s (73.1 MB/s) Preconfiguring packages ... Selecting previously unselected package readline-common. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) @@ -307,7 +339,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/barrnap-0.9+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../barrnap_0.9+dfsg-4_source.changes dpkg-buildpackage: info: source package barrnap dpkg-buildpackage: info: source version 0.9+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -390,12 +426,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3813015/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2413814 and its subdirectories -I: Current time: Wed May 27 09:45:25 -12 2026 -I: pbuilder-time-stamp: 1779918325 +I: removing directory /srv/workspace/pbuilder/3813015 and its subdirectories +I: Current time: Fri Apr 25 05:23:02 +14 2025 +I: pbuilder-time-stamp: 1745508182 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/barrnap_0.9+dfsg-4.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/barrnap_0.9+dfsg-4.diff.gz b2/build.log: 74.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.1% -- replaced with stdout Thu Apr 24 15:23:04 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_barrnap_trixie_amd64_1745508184 + touch /var/log/reproducible-builds/diffoscope_stamp_barrnap_trixie_amd64_1745508184 + RESULT=0 + systemd-run '--description=diffoscope on barrnap/0.9+dfsg-4 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_34-57545 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch --run-session -c jenkins-reproducible-trixie-diffoscope-45e2c723-82c2-47fb-a7b1-3276d0078c32 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/dbd-tmp-g5XdqJ1 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1/barrnap_0.9+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2/barrnap_0.9+dfsg-4_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_34-57545.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/barrnap_0.9+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b1/barrnap_0.9+dfsg-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.nqRprPch/b2/barrnap_0.9+dfsg-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 224ms CPU time consumed: 225ms _ | |__ __ _ _ __ _ __ _ __ __ _ _ __ | '_ \ / _` | '__| '__| '_ \ / _` | '_ \ | |_) | (_| | | | | | | | | (_| | |_) | |_.__/ \__,_|_| |_| |_| |_|\__,_| .__/ |_| Thu Apr 24 15:23:04 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 24 15:23:04 UTC 2025 I: barrnap from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-24 15:23:05] INFO: Starting at 2025-04-24 15:23:05.563265 [2025-04-24 15:23:05] INFO: Generating the pages of 1 package(s) [2025-04-24 15:23:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/barrnap_0.9+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/barrnap_0.9+dfsg-4.diff.gz is missing [2025-04-24 15:23:06] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/barrnap didn't produce a buildlog, even though it has been built. [2025-04-24 15:23:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/barrnap_0.9+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/barrnap_0.9+dfsg-4.diff.gz is missing [2025-04-24 15:23:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/barrnap_0.9+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/barrnap_0.9+dfsg-3.diff.gz is missing [2025-04-24 15:23:06] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/barrnap_0.9+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/barrnap_0.9+dfsg-3.diff.gz is missing [2025-04-24 15:23:07] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/barrnap_0.9+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/barrnap_0.9+dfsg-2.diff.gz is missing [2025-04-24 15:23:07] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/barrnap_0.9+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/barrnap_0.9+dfsg-2.diff.gz is missing [2025-04-24 15:23:07] INFO: Finished at 2025-04-24 15:23:07.031162, took: 0:00:01.467901 Thu Apr 24 15:23:07 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/barrnap.html Thu Apr 24 15:23:07 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Apr 24 15:23:07 UTC 2025 I: Submitting 8.0K b1/barrnap_0.9+dfsg-4_amd64.buildinfo.asc https://buildinfo.debian.net/47d7ca3fdaa4780caa65a277e17bad462497307c/barrnap_0.9+dfsg-4_all Thu Apr 24 15:23:34 UTC 2025 I: Submitting 8.0K b2/barrnap_0.9+dfsg-4_amd64.buildinfo.asc https://buildinfo.debian.net/27f749264ce8452f4e0a7cb39ae4794097f9e345/barrnap_0.9+dfsg-4_all Thu Apr 24 15:23:59 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 24 15:23:59 UTC 2025 I: Done submitting .buildinfo files. Thu Apr 24 15:23:59 UTC 2025 I: Removing signed barrnap_0.9+dfsg-4_amd64.buildinfo.asc files: removed './b1/barrnap_0.9+dfsg-4_amd64.buildinfo.asc' removed './b2/barrnap_0.9+dfsg-4_amd64.buildinfo.asc' 1745508239 amd64 trixie barrnap Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/barrnap_0.9+dfsg-4.rbuild.log: 71.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/barrnap_0.9+dfsg-4.rbuild.log.gz [2025-04-24 15:24:00] INFO: Starting at 2025-04-24 15:24:00.194257 [2025-04-24 15:24:00] INFO: Generating the pages of 1 package(s) [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/barrnap_0.9+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/barrnap_0.9+dfsg-4.diff.gz is missing [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/barrnap_0.9+dfsg-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/barrnap_0.9+dfsg-4.diff.gz is missing [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/barrnap_0.9+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/barrnap_0.9+dfsg-3.diff.gz is missing [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/barrnap_0.9+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/barrnap_0.9+dfsg-3.diff.gz is missing [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/barrnap_0.9+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/barrnap_0.9+dfsg-2.diff.gz is missing [2025-04-24 15:24:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/barrnap_0.9+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/barrnap_0.9+dfsg-2.diff.gz is missing [2025-04-24 15:24:01] INFO: Finished at 2025-04-24 15:24:01.657363, took: 0:00:01.463111 All cleanup done. Thu Apr 24 15:24:01 UTC 2025 - total duration: 0h 1m 50s. Thu Apr 24 15:24:01 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-AwufI1qq, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 46.293s CPU time consumed: 8.741s