Running as unit: rb-build-amd64_35-35584.service ==================================================================================== Sun Nov 24 12:55:43 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_35) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Sun Nov 24 12:55:43 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-y7JHcBWb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 12:55:43 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 12:55:43 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZTEOTX' Sun Nov 24 12:55:44 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 12:55:44 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-UuB8Z4' ok, let's check if libbio-mage-perl is building anywhere yet… ok, libbio-mage-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbio-mage-perl in trixie on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Sun Nov 24 12:55:56 UTC 2024 I: starting to build libbio-mage-perl/trixie/amd64 on jenkins on '2024-11-24 12:55' Sun Nov 24 12:55:56 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/35584/console.log 1732452956 amd64 trixie libbio-mage-perl Sun Nov 24 12:55:56 UTC 2024 I: Downloading source for trixie/libbio-mage-perl=20030502.3-6 --2024-11-24 12:55:57-- http://deb.debian.org/debian/pool/main/libb/libbio-mage-perl/libbio-mage-perl_20030502.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2158 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-mage-perl_20030502.3-6.dsc’ 0K .. 100% 318M=0s 2024-11-24 12:55:57 (318 MB/s) - ‘libbio-mage-perl_20030502.3-6.dsc’ saved [2158/2158] --2024-11-24 12:55:57-- http://deb.debian.org/debian/pool/main/libb/libbio-mage-perl/libbio-mage-perl_20030502.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2158 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-mage-perl_20030502.3-6.dsc’ 0K .. 100% 318M=0s 2024-11-24 12:55:57 (318 MB/s) - ‘libbio-mage-perl_20030502.3-6.dsc’ saved [2158/2158] Sun Nov 24 12:55:57 UTC 2024 I: libbio-mage-perl_20030502.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-mage-perl Binary: libbio-mage-perl Architecture: all Version: 20030502.3-6 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://mged.sourceforge.net/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-mage-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-mage-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: libtie-ixhash-perl Package-List: libbio-mage-perl deb perl optional arch=all Checksums-Sha1: a400c1645d42f163d28f8e2fbb9f6f8b01a5ac66 957614 libbio-mage-perl_20030502.3.orig.tar.gz d3c66f64f9569c659e57145350067277cfeb9af4 3880 libbio-mage-perl_20030502.3-6.debian.tar.xz Checksums-Sha256: d6c1a8d24649b5bc835a8518fd26b68685acbdd8c419e802e51693fc4e3c1c8c 957614 libbio-mage-perl_20030502.3.orig.tar.gz 014a7c9e2b6873eb5fb86706be8bce8a714d13ecf1b7f1851d9b738afc655da5 3880 libbio-mage-perl_20030502.3-6.debian.tar.xz Files: fd2bd02e50e2df16c0c3955a1c5be33b 957614 libbio-mage-perl_20030502.3.orig.tar.gz 8e6c59bcbde5898b2355b61d393ad001 3880 libbio-mage-perl_20030502.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/A2AsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEoYw//dGCilVzyW36UHWw6FUsH1/axHOlQpieF qehd827x7Xli2Qep+aoyWoJrjiA3cnXnF20PKPMD8z6EfVHu3NEN7Znl1xNKTbVv tJOK3vcmTbaPFyEC/lVVc9nVBEqXP0zg/sYPvQUt29wF4BFpUGKq9Tn31Tca6040 B5UzvlbbtSdiGj8Lywqun5MwTHNv4LxrwUn19Z0GmnGWH3jN4gQ08MtlwY9h2Gad AnYlFYRLEd/lsGWMx2BOq6haBYDrA08y8uMnJDOia2yUtsSJLqZfa5asMLxVl8dh ++ndcYZzM0PnVJTwAOU/JVj9BpLi4ymd5JqqK+lHoGU8p+ij1Zxj79mMkAzL1V3G PfSvROlkmcr8YaKVEdreSF/qTGYtLMyxqk+p7VcCjh41JmN66Mx9PhEReMd0toeP B9bVGcY3T63P5HjaLcvsRY0pBfqeLDyp29vZTgMPzcKvyXJys2yNvOdayMsqlHEz QCQWipnBY4IAn4CDAW0pUMDWiFiwXF5GX0yt9CyabZcXTbl0nZt1wN3IftWwrBrK Sb8XYMicM+fAUHjXmOWovCHgcIIRqM11Rhh7tzXi45XtK6OOhzm/e5zg9Z0iN59t FgR3foXW2thQyjMl2Tr3cHoHxsu6vNnBUOyCNP3L8BXjwCTuO7lMj8x3WVWGxN7i WyRc8gE4bu0= =CzSc -----END PGP SIGNATURE----- Sun Nov 24 12:55:57 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 12:55:57 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Sun Nov 24 12:55:57 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Nov 24 12:55:57 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 12:55:57 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Q3x7Cg' ==================================================================================== Sun Nov 24 12:55:58 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 libbio-mage-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf 20030502.3-6" as arguments. Sun Nov 24 12:55:58 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-7q67nDHE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 12:55:58 UTC 2024 I: Downloading source for trixie/libbio-mage-perl=20030502.3-6 Reading package lists... NOTICE: 'libbio-mage-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-mage-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-mage-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 964 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (dsc) [2158 B] Get:2 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (tar) [958 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (diff) [3880 B] Fetched 964 kB in 0s (7746 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-mage-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-mage-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-mage-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 964 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (dsc) [2158 B] Get:2 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (tar) [958 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (diff) [3880 B] Fetched 964 kB in 0s (7746 kB/s) Download complete and in download only mode ============================================================================= Building libbio-mage-perl in trixie on amd64 on infom01-amd64 now. Date: Sun Nov 24 12:55:59 UTC 2024 Date UTC: Sun Nov 24 12:55:59 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 00:56:00 -12 2024 I: pbuilder-time-stamp: 1732452960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-mage-perl_20030502.3-6.dsc] I: copying [./libbio-mage-perl_20030502.3.orig.tar.gz] I: copying [./libbio-mage-perl_20030502.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 10:42:19 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-mage-perl_20030502.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-mage-perl in libbio-mage-perl-20030502.3 dpkg-source: info: unpacking libbio-mage-perl_20030502.3.orig.tar.gz dpkg-source: info: unpacking libbio-mage-perl_20030502.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0dfd5cb9156248c7b53ebb6abf560269' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3022037' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_z8Z3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1 --logfile b1/build.log libbio-mage-perl_20030502.3-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtie-ixhash-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtie-ixhash-perl; however: Package libtie-ixhash-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtie-ixhash-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Fetched 19.8 MB in 0s (72.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... 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Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes dpkg-buildpackage: info: source package libbio-mage-perl dpkg-buildpackage: info: source version 20030502.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::MAGE Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm cp MAGE/ArrayDesign/FeatureGroup.pm blib/lib/Bio/MAGE/ArrayDesign/FeatureGroup.pm cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm cp MAGE/Array/ManufactureLIMSBiomaterial.pm blib/lib/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm cp MAGE/Array/Fiducial.pm blib/lib/Bio/MAGE/Array/Fiducial.pm cp MAGE.pm blib/lib/Bio/MAGE.pm cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm cp MAGE/Base.pm blib/lib/Bio/MAGE/Base.pm cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm cp MAGE/Array/ArrayManufacture.pm blib/lib/Bio/MAGE/Array/ArrayManufacture.pm cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm cp MAGE/Array/FeatureDefect.pm blib/lib/Bio/MAGE/Array/FeatureDefect.pm cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm cp MAGE/Array/PositionDelta.pm blib/lib/Bio/MAGE/Array/PositionDelta.pm cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm cp MAGE/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData.pm cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm cp MAGE/BioAssay/BioAssayTreatment.pm blib/lib/Bio/MAGE/BioAssay/BioAssayTreatment.pm cp MAGE/BioAssayData/DesignElementDimension.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementDimension.pm cp MAGE/BioAssayData/FeatureDimension.pm blib/lib/Bio/MAGE/BioAssayData/FeatureDimension.pm cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm cp MAGE/BioAssayData/BioDataValues.pm blib/lib/Bio/MAGE/BioAssayData/BioDataValues.pm cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm cp MAGE/BioAssay/BioAssay.pm blib/lib/Bio/MAGE/BioAssay/BioAssay.pm cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm cp MAGE/BioAssayData/BioAssayDimension.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDimension.pm cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm cp MAGE/BioAssayData/DesignElementMapping.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMapping.pm cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm cp MAGE/BioAssayData/QuantitationTypeMap.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm cp MAGE/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial.pm cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm cp MAGE/BioSequence/SequencePosition.pm blib/lib/Bio/MAGE/BioSequence/SequencePosition.pm cp MAGE/Description/ExternalReference.pm blib/lib/Bio/MAGE/Description/ExternalReference.pm cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm cp MAGE/BioMaterial/BioSource.pm blib/lib/Bio/MAGE/BioMaterial/BioSource.pm cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm cp MAGE/Description/OntologyEntry.pm blib/lib/Bio/MAGE/Description/OntologyEntry.pm cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm cp MAGE/DesignElement/CompositeCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/CompositeCompositeMap.pm cp MAGE/Description/Description.pm blib/lib/Bio/MAGE/Description/Description.pm cp MAGE/DesignElement/CompositePosition.pm blib/lib/Bio/MAGE/DesignElement/CompositePosition.pm cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm cp MAGE/Description.pm blib/lib/Bio/MAGE/Description.pm cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm cp MAGE/Experiment.pm blib/lib/Bio/MAGE/Experiment.pm cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm cp MAGE/Experiment/FactorValue.pm blib/lib/Bio/MAGE/Experiment/FactorValue.pm cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm cp MAGE/DesignElement/ReporterPosition.pm blib/lib/Bio/MAGE/DesignElement/ReporterPosition.pm cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm cp MAGE/Experiment/Experiment.pm blib/lib/Bio/MAGE/Experiment/Experiment.pm cp MAGE/Measurement/Measurement.pm blib/lib/Bio/MAGE/Measurement/Measurement.pm cp MAGE/Identifiable.pm blib/lib/Bio/MAGE/Identifiable.pm cp MAGE/Measurement.pm blib/lib/Bio/MAGE/Measurement.pm cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm cp MAGE/DesignElement/Reporter.pm blib/lib/Bio/MAGE/DesignElement/Reporter.pm cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm cp MAGE/Measurement/MassUnit.pm blib/lib/Bio/MAGE/Measurement/MassUnit.pm cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm cp MAGE/QuantitationType/DerivedSignal.pm blib/lib/Bio/MAGE/QuantitationType/DerivedSignal.pm cp MAGE/Protocol/Parameter.pm blib/lib/Bio/MAGE/Protocol/Parameter.pm cp MAGE/QuantitationType/SpecializedQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm cp MAGE/QuantitationType/Failed.pm blib/lib/Bio/MAGE/QuantitationType/Failed.pm cp classes.pm blib/lib/Bio/classes.pm cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm cp MAGE/QuantitationType/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/QuantitationType.pm cp MAGE/Protocol/ProtocolApplication.pm blib/lib/Bio/MAGE/Protocol/ProtocolApplication.pm cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm cp MAGE/Protocol/Protocol.pm blib/lib/Bio/MAGE/Protocol/Protocol.pm cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm cp MAGE/NameValueType.pm blib/lib/Bio/MAGE/NameValueType.pm cp MAGE/QuantitationType/Error.pm blib/lib/Bio/MAGE/QuantitationType/Error.pm cp MAGE/Protocol/SoftwareApplication.pm blib/lib/Bio/MAGE/Protocol/SoftwareApplication.pm cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm cp MAGE/Protocol/HardwareApplication.pm blib/lib/Bio/MAGE/Protocol/HardwareApplication.pm Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/Array.t ........................ 1..170 ok 1 - use Bio::MAGE::Array::Array; ok 2 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - arrayXOrigin new ok 12 - arrayXOrigin getter/setter ok 13 - arrayXOrigin getter throws exception with argument ok 14 - arrayXOrigin setter throws exception with no argument ok 15 - arrayXOrigin setter throws exception with too many argument ok 16 - arrayXOrigin setter accepts undef ok 17 - arrayYOrigin new ok 18 - arrayYOrigin getter/setter ok 19 - arrayYOrigin getter throws exception with argument ok 20 - arrayYOrigin setter throws exception with no argument ok 21 - arrayYOrigin setter throws exception with too many argument ok 22 - arrayYOrigin setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - arrayIdentifier new ok 30 - arrayIdentifier getter/setter ok 31 - arrayIdentifier getter throws exception with argument ok 32 - arrayIdentifier setter throws exception with no argument ok 33 - arrayIdentifier setter throws exception with too many argument ok 34 - arrayIdentifier setter accepts undef ok 35 - originRelativeTo new ok 36 - originRelativeTo getter/setter ok 37 - originRelativeTo getter throws exception with argument ok 38 - originRelativeTo setter throws exception with no argument ok 39 - originRelativeTo setter throws exception with too many argument ok 40 - originRelativeTo setter accepts undef ok 41 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 42 - setArrayGroup returns value ok 43 - getArrayGroup fetches correct value ok 44 - setArrayGroup throws exception with bad argument ok 45 - getArrayGroup throws exception with argument ok 46 - setArrayGroup throws exception with no argument ok 47 - setArrayGroup throws exception with too many argument ok 48 - setArrayGroup accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - arrayGroup->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - arrayGroup->self() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 55 - setArrayDesign returns value ok 56 - getArrayDesign fetches correct value ok 57 - setArrayDesign throws exception with bad argument ok 58 - getArrayDesign throws exception with argument ok 59 - setArrayDesign throws exception with no argument ok 60 - setArrayDesign throws exception with too many argument ok 61 - setArrayDesign accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayDesign->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayDesign->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 68 - setInformation returns value ok 69 - getInformation fetches correct value ok 70 - setInformation throws exception with bad argument ok 71 - getInformation throws exception with argument ok 72 - setInformation throws exception with no argument ok 73 - setInformation throws exception with too many argument ok 74 - setInformation accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - information->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - information->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - descriptions set in new() ok 119 - setDescriptions returns correct value ok 120 - getDescriptions fetches correct value ok 121 - addDescriptions returns number of items in list ok 122 - addDescriptions adds correct value ok 123 - setDescriptions throws exception with non-array argument ok 124 - setDescriptions throws exception with bad argument array ok 125 - addDescriptions throws exception with no arguments ok 126 - addDescriptions throws exception with bad array ok 127 - setDescriptions accepts empty array ref ok 128 - getDescriptions throws exception with argument ok 129 - setDescriptions throws exception with no argument ok 130 - setDescriptions throws exception with too many argument ok 131 - setDescriptions accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - descriptions->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - descriptions->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 138 - setSecurity returns value ok 139 - getSecurity fetches correct value ok 140 - setSecurity throws exception with bad argument ok 141 - getSecurity throws exception with argument ok 142 - setSecurity throws exception with no argument ok 143 - setSecurity throws exception with too many argument ok 144 - setSecurity accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - security->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - security->self() is a valid Bio::MAGE::Association::End ok 150 - arrayManufactureDeviations set in new() ok 151 - setArrayManufactureDeviations returns correct value ok 152 - getArrayManufactureDeviations fetches correct value ok 153 - addArrayManufactureDeviations returns number of items in list ok 154 - addArrayManufactureDeviations adds correct value ok 155 - setArrayManufactureDeviations throws exception with non-array argument ok 156 - setArrayManufactureDeviations throws exception with bad argument array ok 157 - addArrayManufactureDeviations throws exception with no arguments ok 158 - addArrayManufactureDeviations throws exception with bad array ok 159 - setArrayManufactureDeviations accepts empty array ref ok 160 - getArrayManufactureDeviations throws exception with argument ok 161 - setArrayManufactureDeviations throws exception with no argument ok 162 - setArrayManufactureDeviations throws exception with too many argument ok 163 - setArrayManufactureDeviations accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - arrayManufactureDeviations->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - arrayManufactureDeviations->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 170 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok t/Array_package.t ................ 1..33 ok 1 - use Bio::MAGE::Array; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 4 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 5 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 6 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 7 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 8 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 9 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 10 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 11 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 12 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 13 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - arraygroup_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getArrayGroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getArrayGroup_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - array_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getArray_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getArray_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - arraymanufacture_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getArrayManufacture_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getArrayManufacture_list not empty ok t/ArrayDesign.t .................. 1..197 ok 1 - use Bio::MAGE::ArrayDesign::ArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - reporterGroups set in new() ok 49 - setReporterGroups returns correct value ok 50 - getReporterGroups fetches correct value ok 51 - addReporterGroups returns number of items in list ok 52 - addReporterGroups adds correct value ok 53 - setReporterGroups throws exception with non-array argument ok 54 - setReporterGroups throws exception with bad argument array ok 55 - addReporterGroups throws exception with no arguments ok 56 - addReporterGroups throws exception with bad array ok 57 - setReporterGroups accepts empty array ref ok 58 - getReporterGroups throws exception with argument ok 59 - setReporterGroups throws exception with no argument ok 60 - setReporterGroups throws exception with too many argument ok 61 - setReporterGroups accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 67 - featureGroups set in new() ok 68 - setFeatureGroups returns correct value ok 69 - getFeatureGroups fetches correct value ok 70 - addFeatureGroups returns number of items in list ok 71 - addFeatureGroups adds correct value ok 72 - setFeatureGroups throws exception with non-array argument ok 73 - setFeatureGroups throws exception with bad argument array ok 74 - addFeatureGroups throws exception with no arguments ok 75 - addFeatureGroups throws exception with bad array ok 76 - setFeatureGroups accepts empty array ref ok 77 - getFeatureGroups throws exception with argument ok 78 - setFeatureGroups throws exception with no argument ok 79 - setFeatureGroups throws exception with too many argument ok 80 - setFeatureGroups accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 86 - descriptions set in new() ok 87 - setDescriptions returns correct value ok 88 - getDescriptions fetches correct value ok 89 - addDescriptions returns number of items in list ok 90 - addDescriptions adds correct value ok 91 - setDescriptions throws exception with non-array argument ok 92 - setDescriptions throws exception with bad argument array ok 93 - addDescriptions throws exception with no arguments ok 94 - addDescriptions throws exception with bad array ok 95 - setDescriptions accepts empty array ref ok 96 - getDescriptions throws exception with argument ok 97 - setDescriptions throws exception with no argument ok 98 - setDescriptions throws exception with too many argument ok 99 - setDescriptions accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - descriptions->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - descriptions->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 106 - setSecurity returns value ok 107 - getSecurity fetches correct value ok 108 - setSecurity throws exception with bad argument ok 109 - getSecurity throws exception with argument ok 110 - setSecurity throws exception with no argument ok 111 - setSecurity throws exception with too many argument ok 112 - setSecurity accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - security->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - security->self() is a valid Bio::MAGE::Association::End ok 118 - auditTrail set in new() ok 119 - setAuditTrail returns correct value ok 120 - getAuditTrail fetches correct value ok 121 - addAuditTrail returns number of items in list ok 122 - addAuditTrail adds correct value ok 123 - setAuditTrail throws exception with non-array argument ok 124 - setAuditTrail throws exception with bad argument array ok 125 - addAuditTrail throws exception with no arguments ok 126 - addAuditTrail throws exception with bad array ok 127 - setAuditTrail accepts empty array ref ok 128 - getAuditTrail throws exception with argument ok 129 - setAuditTrail throws exception with no argument ok 130 - setAuditTrail throws exception with too many argument ok 131 - setAuditTrail accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 137 - propertySets set in new() ok 138 - setPropertySets returns correct value ok 139 - getPropertySets fetches correct value ok 140 - addPropertySets returns number of items in list ok 141 - addPropertySets adds correct value ok 142 - setPropertySets throws exception with non-array argument ok 143 - setPropertySets throws exception with bad argument array ok 144 - addPropertySets throws exception with no arguments ok 145 - addPropertySets throws exception with bad array ok 146 - setPropertySets accepts empty array ref ok 147 - getPropertySets throws exception with argument ok 148 - setPropertySets throws exception with no argument ok 149 - setPropertySets throws exception with too many argument ok 150 - setPropertySets accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - propertySets->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - propertySets->self() is a valid Bio::MAGE::Association::End ok 156 - compositeGroups set in new() ok 157 - setCompositeGroups returns correct value ok 158 - getCompositeGroups fetches correct value ok 159 - addCompositeGroups returns number of items in list ok 160 - addCompositeGroups adds correct value ok 161 - setCompositeGroups throws exception with non-array argument ok 162 - setCompositeGroups throws exception with bad argument array ok 163 - addCompositeGroups throws exception with no arguments ok 164 - addCompositeGroups throws exception with bad array ok 165 - setCompositeGroups accepts empty array ref ok 166 - getCompositeGroups throws exception with argument ok 167 - setCompositeGroups throws exception with no argument ok 168 - setCompositeGroups throws exception with too many argument ok 169 - setCompositeGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 175 - designProviders set in new() ok 176 - setDesignProviders returns correct value ok 177 - getDesignProviders fetches correct value ok 178 - addDesignProviders returns number of items in list ok 179 - addDesignProviders adds correct value ok 180 - setDesignProviders throws exception with non-array argument ok 181 - setDesignProviders throws exception with bad argument array ok 182 - addDesignProviders throws exception with no arguments ok 183 - addDesignProviders throws exception with bad array ok 184 - setDesignProviders accepts empty array ref ok 185 - getDesignProviders throws exception with argument ok 186 - setDesignProviders throws exception with no argument ok 187 - setDesignProviders throws exception with too many argument ok 188 - setDesignProviders accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - designProviders->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - designProviders->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 195 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 196 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 197 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok t/ArrayDesign_package.t .......... 1..32 ok 1 - use Bio::MAGE::ArrayDesign; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 4 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 5 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 6 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 7 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 8 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 9 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 10 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 11 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 12 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 13 - tagname ok 14 - xml_lists ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - reportergroup_list empty ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - getReporterGroup_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getReporterGroup_list not empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - compositegroup_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeGroup_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getCompositeGroup_list not empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - arraydesign_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getArrayDesign_list empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - getArrayDesign_list not empty ok t/ArrayGroup.t ................... 1..205 ok 1 - use Bio::MAGE::Array::ArrayGroup; ok 2 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 3 - package ok 4 - class_name ok 5 - arraySpacingY new ok 6 - arraySpacingY getter/setter ok 7 - arraySpacingY getter throws exception with argument ok 8 - arraySpacingY setter throws exception with no argument ok 9 - arraySpacingY setter throws exception with too many argument ok 10 - arraySpacingY setter accepts undef ok 11 - numArrays new ok 12 - numArrays getter/setter ok 13 - numArrays getter throws exception with argument ok 14 - numArrays setter throws exception with no argument ok 15 - numArrays setter throws exception with too many argument ok 16 - numArrays setter accepts undef ok 17 - width new ok 18 - width getter/setter ok 19 - width getter throws exception with argument ok 20 - width setter throws exception with no argument ok 21 - width setter throws exception with too many argument ok 22 - width setter accepts undef ok 23 - orientationMarkPosition new ok 24 - orientationMarkPosition getter/setter ok 25 - orientationMarkPosition getter throws exception with argument ok 26 - orientationMarkPosition setter throws exception with no argument ok 27 - orientationMarkPosition setter throws exception with too many argument ok 28 - orientationMarkPosition setter accepts undef ok 29 - orientationMarkPosition setter throws exception with bad argument ok 30 - orientationMarkPosition accepts top ok 31 - orientationMarkPosition accepts bottom ok 32 - orientationMarkPosition accepts left ok 33 - orientationMarkPosition accepts right ok 34 - arraySpacingX new ok 35 - arraySpacingX getter/setter ok 36 - arraySpacingX getter throws exception with argument ok 37 - arraySpacingX setter throws exception with no argument ok 38 - arraySpacingX setter throws exception with too many argument ok 39 - arraySpacingX setter accepts undef ok 40 - name new ok 41 - name getter/setter ok 42 - name getter throws exception with argument ok 43 - name setter throws exception with no argument ok 44 - name setter throws exception with too many argument ok 45 - name setter accepts undef ok 46 - barcode new ok 47 - barcode getter/setter ok 48 - barcode getter throws exception with argument ok 49 - barcode setter throws exception with no argument ok 50 - barcode setter throws exception with too many argument ok 51 - barcode setter accepts undef ok 52 - orientationMark new ok 53 - orientationMark getter/setter ok 54 - orientationMark getter throws exception with argument ok 55 - orientationMark setter throws exception with no argument ok 56 - orientationMark setter throws exception with too many argument ok 57 - orientationMark setter accepts undef ok 58 - identifier new ok 59 - identifier getter/setter ok 60 - identifier getter throws exception with argument ok 61 - identifier setter throws exception with no argument ok 62 - identifier setter throws exception with too many argument ok 63 - identifier setter accepts undef ok 64 - length new ok 65 - length getter/setter ok 66 - length getter throws exception with argument ok 67 - length setter throws exception with no argument ok 68 - length setter throws exception with too many argument ok 69 - length setter accepts undef ok 70 - arrays set in new() ok 71 - setArrays returns correct value ok 72 - getArrays fetches correct value ok 73 - addArrays returns number of items in list ok 74 - addArrays adds correct value ok 75 - setArrays throws exception with non-array argument ok 76 - setArrays throws exception with bad argument array ok 77 - addArrays throws exception with no arguments ok 78 - addArrays throws exception with bad array ok 79 - setArrays accepts empty array ref ok 80 - getArrays throws exception with argument ok 81 - setArrays throws exception with no argument ok 82 - setArrays throws exception with too many argument ok 83 - setArrays accepts undef ok 84 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - arrays->other() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - arrays->self() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 90 - setDistanceUnit returns value ok 91 - getDistanceUnit fetches correct value ok 92 - setDistanceUnit throws exception with bad argument ok 93 - getDistanceUnit throws exception with argument ok 94 - setDistanceUnit throws exception with no argument ok 95 - setDistanceUnit throws exception with too many argument ok 96 - setDistanceUnit accepts undef ok 97 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 102 - descriptions set in new() ok 103 - setDescriptions returns correct value ok 104 - getDescriptions fetches correct value ok 105 - addDescriptions returns number of items in list ok 106 - addDescriptions adds correct value ok 107 - setDescriptions throws exception with non-array argument ok 108 - setDescriptions throws exception with bad argument array ok 109 - addDescriptions throws exception with no arguments ok 110 - addDescriptions throws exception with bad array ok 111 - setDescriptions accepts empty array ref ok 112 - getDescriptions throws exception with argument ok 113 - setDescriptions throws exception with no argument ok 114 - setDescriptions throws exception with too many argument ok 115 - setDescriptions accepts undef ok 116 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->other() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - descriptions->self() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 122 - setSubstrateType returns value ok 123 - getSubstrateType fetches correct value ok 124 - setSubstrateType throws exception with bad argument ok 125 - getSubstrateType throws exception with argument ok 126 - setSubstrateType throws exception with no argument ok 127 - setSubstrateType throws exception with too many argument ok 128 - setSubstrateType accepts undef ok 129 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - substrateType->other() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - substrateType->self() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 135 - setSecurity returns value ok 136 - getSecurity fetches correct value ok 137 - setSecurity throws exception with bad argument ok 138 - getSecurity throws exception with argument ok 139 - setSecurity throws exception with no argument ok 140 - setSecurity throws exception with too many argument ok 141 - setSecurity accepts undef ok 142 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->other() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - security->self() is a valid Bio::MAGE::Association::End ok 147 - auditTrail set in new() ok 148 - setAuditTrail returns correct value ok 149 - getAuditTrail fetches correct value ok 150 - addAuditTrail returns number of items in list ok 151 - addAuditTrail adds correct value ok 152 - setAuditTrail throws exception with non-array argument ok 153 - setAuditTrail throws exception with bad argument array ok 154 - addAuditTrail throws exception with no arguments ok 155 - addAuditTrail throws exception with bad array ok 156 - setAuditTrail accepts empty array ref ok 157 - getAuditTrail throws exception with argument ok 158 - setAuditTrail throws exception with no argument ok 159 - setAuditTrail throws exception with too many argument ok 160 - setAuditTrail accepts undef ok 161 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 165 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 166 - propertySets set in new() ok 167 - setPropertySets returns correct value ok 168 - getPropertySets fetches correct value ok 169 - addPropertySets returns number of items in list ok 170 - addPropertySets adds correct value ok 171 - setPropertySets throws exception with non-array argument ok 172 - setPropertySets throws exception with bad argument array ok 173 - addPropertySets throws exception with no arguments ok 174 - addPropertySets throws exception with bad array ok 175 - setPropertySets accepts empty array ref ok 176 - getPropertySets throws exception with argument ok 177 - setPropertySets throws exception with no argument ok 178 - setPropertySets throws exception with too many argument ok 179 - setPropertySets accepts undef ok 180 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - propertySets->other() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 184 - propertySets->self() is a valid Bio::MAGE::Association::End ok 185 - fiducials set in new() ok 186 - setFiducials returns correct value ok 187 - getFiducials fetches correct value ok 188 - addFiducials returns number of items in list ok 189 - addFiducials adds correct value ok 190 - setFiducials throws exception with non-array argument ok 191 - setFiducials throws exception with bad argument array ok 192 - addFiducials throws exception with no arguments ok 193 - addFiducials throws exception with bad array ok 194 - setFiducials accepts empty array ref ok 195 - getFiducials throws exception with argument ok 196 - setFiducials throws exception with no argument ok 197 - setFiducials throws exception with too many argument ok 198 - setFiducials accepts undef ok 199 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 200 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 201 - fiducials->other() is a valid Bio::MAGE::Association::End ok 202 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 203 - fiducials->self() is a valid Bio::MAGE::Association::End ok 204 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 205 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufacture.t ............. 1..195 ok 1 - use Bio::MAGE::Array::ArrayManufacture; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - tolerance new ok 12 - tolerance getter/setter ok 13 - tolerance getter throws exception with argument ok 14 - tolerance setter throws exception with no argument ok 15 - tolerance setter throws exception with too many argument ok 16 - tolerance setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - manufacturingDate new ok 24 - manufacturingDate getter/setter ok 25 - manufacturingDate getter throws exception with argument ok 26 - manufacturingDate setter throws exception with no argument ok 27 - manufacturingDate setter throws exception with too many argument ok 28 - manufacturingDate setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - arrayManufacturers set in new() ok 49 - setArrayManufacturers returns correct value ok 50 - getArrayManufacturers fetches correct value ok 51 - addArrayManufacturers returns number of items in list ok 52 - addArrayManufacturers adds correct value ok 53 - setArrayManufacturers throws exception with non-array argument ok 54 - setArrayManufacturers throws exception with bad argument array ok 55 - addArrayManufacturers throws exception with no arguments ok 56 - addArrayManufacturers throws exception with bad array ok 57 - setArrayManufacturers accepts empty array ref ok 58 - getArrayManufacturers throws exception with argument ok 59 - setArrayManufacturers throws exception with no argument ok 60 - setArrayManufacturers throws exception with too many argument ok 61 - setArrayManufacturers accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayManufacturers->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayManufacturers->self() is a valid Bio::MAGE::Association::End ok 67 - featureLIMSs set in new() ok 68 - setFeatureLIMSs returns correct value ok 69 - getFeatureLIMSs fetches correct value ok 70 - addFeatureLIMSs returns number of items in list ok 71 - addFeatureLIMSs adds correct value ok 72 - setFeatureLIMSs throws exception with non-array argument ok 73 - setFeatureLIMSs throws exception with bad argument array ok 74 - addFeatureLIMSs throws exception with no arguments ok 75 - addFeatureLIMSs throws exception with bad array ok 76 - setFeatureLIMSs accepts empty array ref ok 77 - getFeatureLIMSs throws exception with argument ok 78 - setFeatureLIMSs throws exception with no argument ok 79 - setFeatureLIMSs throws exception with too many argument ok 80 - setFeatureLIMSs accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureLIMSs->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureLIMSs->self() is a valid Bio::MAGE::Association::End ok 86 - arrays set in new() ok 87 - setArrays returns correct value ok 88 - getArrays fetches correct value ok 89 - addArrays returns number of items in list ok 90 - addArrays adds correct value ok 91 - setArrays throws exception with non-array argument ok 92 - setArrays throws exception with bad argument array ok 93 - addArrays throws exception with no arguments ok 94 - addArrays throws exception with bad array ok 95 - setArrays accepts empty array ref ok 96 - getArrays throws exception with argument ok 97 - setArrays throws exception with no argument ok 98 - setArrays throws exception with too many argument ok 99 - setArrays accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - arrays->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - arrays->self() is a valid Bio::MAGE::Association::End ok 105 - descriptions set in new() ok 106 - setDescriptions returns correct value ok 107 - getDescriptions fetches correct value ok 108 - addDescriptions returns number of items in list ok 109 - addDescriptions adds correct value ok 110 - setDescriptions throws exception with non-array argument ok 111 - setDescriptions throws exception with bad argument array ok 112 - addDescriptions throws exception with no arguments ok 113 - addDescriptions throws exception with bad array ok 114 - setDescriptions accepts empty array ref ok 115 - getDescriptions throws exception with argument ok 116 - setDescriptions throws exception with no argument ok 117 - setDescriptions throws exception with too many argument ok 118 - setDescriptions accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - descriptions->self() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 125 - setSecurity returns value ok 126 - getSecurity fetches correct value ok 127 - setSecurity throws exception with bad argument ok 128 - getSecurity throws exception with argument ok 129 - setSecurity throws exception with no argument ok 130 - setSecurity throws exception with too many argument ok 131 - setSecurity accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - security->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - security->self() is a valid Bio::MAGE::Association::End ok 137 - auditTrail set in new() ok 138 - setAuditTrail returns correct value ok 139 - getAuditTrail fetches correct value ok 140 - addAuditTrail returns number of items in list ok 141 - addAuditTrail adds correct value ok 142 - setAuditTrail throws exception with non-array argument ok 143 - setAuditTrail throws exception with bad argument array ok 144 - addAuditTrail throws exception with no arguments ok 145 - addAuditTrail throws exception with bad array ok 146 - setAuditTrail accepts empty array ref ok 147 - getAuditTrail throws exception with argument ok 148 - setAuditTrail throws exception with no argument ok 149 - setAuditTrail throws exception with too many argument ok 150 - setAuditTrail accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 156 - propertySets set in new() ok 157 - setPropertySets returns correct value ok 158 - getPropertySets fetches correct value ok 159 - addPropertySets returns number of items in list ok 160 - addPropertySets adds correct value ok 161 - setPropertySets throws exception with non-array argument ok 162 - setPropertySets throws exception with bad argument array ok 163 - addPropertySets throws exception with no arguments ok 164 - addPropertySets throws exception with bad array ok 165 - setPropertySets accepts empty array ref ok 166 - getPropertySets throws exception with argument ok 167 - setPropertySets throws exception with no argument ok 168 - setPropertySets throws exception with too many argument ok 169 - setPropertySets accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - propertySets->self() is a valid Bio::MAGE::Association::End ok 175 - qualityControlStatistics set in new() ok 176 - setQualityControlStatistics returns correct value ok 177 - getQualityControlStatistics fetches correct value ok 178 - addQualityControlStatistics returns number of items in list ok 179 - addQualityControlStatistics adds correct value ok 180 - setQualityControlStatistics throws exception with non-array argument ok 181 - setQualityControlStatistics throws exception with bad argument array ok 182 - addQualityControlStatistics throws exception with no arguments ok 183 - addQualityControlStatistics throws exception with bad array ok 184 - setQualityControlStatistics accepts empty array ref ok 185 - getQualityControlStatistics throws exception with argument ok 186 - setQualityControlStatistics throws exception with no argument ok 187 - setQualityControlStatistics throws exception with too many argument ok 188 - setQualityControlStatistics accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 195 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufactureDeviation.t .... 1..63 ok 1 - use Bio::MAGE::Array::ArrayManufactureDeviation; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 3 - package ok 4 - class_name ok 5 - adjustments set in new() ok 6 - setAdjustments returns correct value ok 7 - getAdjustments fetches correct value ok 8 - addAdjustments returns number of items in list ok 9 - addAdjustments adds correct value ok 10 - setAdjustments throws exception with non-array argument ok 11 - setAdjustments throws exception with bad argument array ok 12 - addAdjustments throws exception with no arguments ok 13 - addAdjustments throws exception with bad array ok 14 - setAdjustments accepts empty array ref ok 15 - getAdjustments throws exception with argument ok 16 - setAdjustments throws exception with no argument ok 17 - setAdjustments throws exception with too many argument ok 18 - setAdjustments accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - adjustments->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - adjustments->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - featureDefects set in new() ok 44 - setFeatureDefects returns correct value ok 45 - getFeatureDefects fetches correct value ok 46 - addFeatureDefects returns number of items in list ok 47 - addFeatureDefects adds correct value ok 48 - setFeatureDefects throws exception with non-array argument ok 49 - setFeatureDefects throws exception with bad argument array ok 50 - addFeatureDefects throws exception with no arguments ok 51 - addFeatureDefects throws exception with bad array ok 52 - setFeatureDefects accepts empty array ref ok 53 - getFeatureDefects throws exception with argument ok 54 - setFeatureDefects throws exception with no argument ok 55 - setFeatureDefects throws exception with too many argument ok 56 - setFeatureDefects accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - featureDefects->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - featureDefects->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok t/Association.t .................. 1..8 ok 1 - CARD_1: testing full path ok 2 - CARD_1: testing import ok 3 - CARD_0_OR_1: testing full path ok 4 - CARD_0_OR_1: testing import ok 5 - CARD_1_TO_N: testing full path ok 6 - CARD_1_TO_N: testing import ok 7 - CARD_0_TO_N: testing full path ok 8 - CARD_0_TO_N: testing import ok t/Audit.t ........................ 1..104 ok 1 - use Bio::MAGE::AuditAndSecurity::Audit; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 3 - package ok 4 - class_name ok 5 - date new ok 6 - date getter/setter ok 7 - date getter throws exception with argument ok 8 - date setter throws exception with no argument ok 9 - date setter throws exception with too many argument ok 10 - date setter accepts undef ok 11 - action new ok 12 - action getter/setter ok 13 - action getter throws exception with argument ok 14 - action setter throws exception with no argument ok 15 - action setter throws exception with too many argument ok 16 - action setter accepts undef ok 17 - action setter throws exception with bad argument ok 18 - action accepts creation ok 19 - action accepts modification ok 20 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 21 - setPerformer returns value ok 22 - getPerformer fetches correct value ok 23 - setPerformer throws exception with bad argument ok 24 - getPerformer throws exception with argument ok 25 - setPerformer throws exception with no argument ok 26 - setPerformer throws exception with too many argument ok 27 - setPerformer accepts undef ok 28 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - performer->other() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 32 - performer->self() is a valid Bio::MAGE::Association::End ok 33 - descriptions set in new() ok 34 - setDescriptions returns correct value ok 35 - getDescriptions fetches correct value ok 36 - addDescriptions returns number of items in list ok 37 - addDescriptions adds correct value ok 38 - setDescriptions throws exception with non-array argument ok 39 - setDescriptions throws exception with bad argument array ok 40 - addDescriptions throws exception with no arguments ok 41 - addDescriptions throws exception with bad array ok 42 - setDescriptions accepts empty array ref ok 43 - getDescriptions throws exception with argument ok 44 - setDescriptions throws exception with no argument ok 45 - setDescriptions throws exception with too many argument ok 46 - setDescriptions accepts undef ok 47 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->other() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - descriptions->self() is a valid Bio::MAGE::Association::End ok 52 - auditTrail set in new() ok 53 - setAuditTrail returns correct value ok 54 - getAuditTrail fetches correct value ok 55 - addAuditTrail returns number of items in list ok 56 - addAuditTrail adds correct value ok 57 - setAuditTrail throws exception with non-array argument ok 58 - setAuditTrail throws exception with bad argument array ok 59 - addAuditTrail throws exception with no arguments ok 60 - addAuditTrail throws exception with bad array ok 61 - setAuditTrail accepts empty array ref ok 62 - getAuditTrail throws exception with argument ok 63 - setAuditTrail throws exception with no argument ok 64 - setAuditTrail throws exception with too many argument ok 65 - setAuditTrail accepts undef ok 66 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 72 - setSecurity returns value ok 73 - getSecurity fetches correct value ok 74 - setSecurity throws exception with bad argument ok 75 - getSecurity throws exception with argument ok 76 - setSecurity throws exception with no argument ok 77 - setSecurity throws exception with too many argument ok 78 - setSecurity accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - security->self() is a valid Bio::MAGE::Association::End ok 84 - propertySets set in new() ok 85 - setPropertySets returns correct value ok 86 - getPropertySets fetches correct value ok 87 - addPropertySets returns number of items in list ok 88 - addPropertySets adds correct value ok 89 - setPropertySets throws exception with non-array argument ok 90 - setPropertySets throws exception with bad argument array ok 91 - addPropertySets throws exception with no arguments ok 92 - addPropertySets throws exception with bad array ok 93 - setPropertySets accepts empty array ref ok 94 - getPropertySets throws exception with argument ok 95 - setPropertySets throws exception with no argument ok 96 - setPropertySets throws exception with too many argument ok 97 - setPropertySets accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - propertySets->self() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 104 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok t/AuditAndSecurity_package.t ..... 1..29 ok 1 - use Bio::MAGE::AuditAndSecurity; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 4 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 5 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 6 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 7 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 8 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 9 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 10 - tagname ok 11 - xml_lists ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - contact_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getContact_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getContact_list not empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - securitygroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getSecurityGroup_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getSecurityGroup_list not empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - security_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSecurity_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getSecurity_list not empty ok Attempt to call undefined import method with arguments ("use base qw(Base)") via package "Foo::Bar" (Perhaps you forgot to load the package?) at t/Base.t line 114. t/Base.t ......................... 1..32 ok 1 - use Bio::MAGE::Base; ok 2 - use Foo::Bar; ok 3 - An object of class 'Foo::Bar' isa 'Foo::Bar' ok 4 - Foo::Bar has 2 slots ok 5 - Foo::Bar has one attribute ok 6 - Foo::Bar has one association ok 7 - Foo::Bar has one subclass ok 8 - Foo::Bar has one superclass ok 9 - Foo::Bar class_name ok 10 - 'can set slots in new()' isa 'Foo::Bar' ok 11 - 'can retrieve foo value' isa 'HASH' ok 12 - foo has correct value ok 13 - 'can retrieve bar value' isa 'ARRAY' ok 14 - bar has correct count ok 15 - bar has correct value ok 16 - 'copy constructor works' isa 'Foo::Bar' ok 17 - 'copy constructor can retrieve foo value' isa 'HASH' ok 18 - copy constructor foo has correct value ok 19 - 'copy constructor can retrieve bar value' isa 'ARRAY' ok 20 - copy constructor bar has correct count ok 21 - copy constructor bar has correct value ok 22 - 'can set get/set slots in new()' isa 'Foo::Bar' ok 23 - 'can retrieve bar value' isa 'ARRAY' ok 24 - bar has correct count ok 25 - bar has correct value ok 26 - 'can set association/attribute slots in new()' isa 'Foo::Bar' ok 27 - attr1 has correct value ok 28 - assoc1 has correct value ok 29 - get_slot works ok 30 - get_slots works ok 31 - set_slot works ok 32 - set_slots works ok t/BibliographicReference.t ....... 1..174 ok 1 - use Bio::MAGE::BQS::BibliographicReference; ok 2 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 3 - package ok 4 - class_name ok 5 - authors new ok 6 - authors getter/setter ok 7 - authors getter throws exception with argument ok 8 - authors setter throws exception with no argument ok 9 - authors setter throws exception with too many argument ok 10 - authors setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - volume new ok 18 - volume getter/setter ok 19 - volume getter throws exception with argument ok 20 - volume setter throws exception with no argument ok 21 - volume setter throws exception with too many argument ok 22 - volume setter accepts undef ok 23 - issue new ok 24 - issue getter/setter ok 25 - issue getter throws exception with argument ok 26 - issue setter throws exception with no argument ok 27 - issue setter throws exception with too many argument ok 28 - issue setter accepts undef ok 29 - editor new ok 30 - editor getter/setter ok 31 - editor getter throws exception with argument ok 32 - editor setter throws exception with no argument ok 33 - editor setter throws exception with too many argument ok 34 - editor setter accepts undef ok 35 - title new ok 36 - title getter/setter ok 37 - title getter throws exception with argument ok 38 - title setter throws exception with no argument ok 39 - title setter throws exception with too many argument ok 40 - title setter accepts undef ok 41 - publication new ok 42 - publication getter/setter ok 43 - publication getter throws exception with argument ok 44 - publication setter throws exception with no argument ok 45 - publication setter throws exception with too many argument ok 46 - publication setter accepts undef ok 47 - publisher new ok 48 - publisher getter/setter ok 49 - publisher getter throws exception with argument ok 50 - publisher setter throws exception with no argument ok 51 - publisher setter throws exception with too many argument ok 52 - publisher setter accepts undef ok 53 - year new ok 54 - year getter/setter ok 55 - year getter throws exception with argument ok 56 - year setter throws exception with no argument ok 57 - year setter throws exception with too many argument ok 58 - year setter accepts undef ok 59 - pages new ok 60 - pages getter/setter ok 61 - pages getter throws exception with argument ok 62 - pages setter throws exception with no argument ok 63 - pages setter throws exception with too many argument ok 64 - pages setter accepts undef ok 65 - parameters set in new() ok 66 - setParameters returns correct value ok 67 - getParameters fetches correct value ok 68 - addParameters returns number of items in list ok 69 - addParameters adds correct value ok 70 - setParameters throws exception with non-array argument ok 71 - setParameters throws exception with bad argument array ok 72 - addParameters throws exception with no arguments ok 73 - addParameters throws exception with bad array ok 74 - setParameters accepts empty array ref ok 75 - getParameters throws exception with argument ok 76 - setParameters throws exception with no argument ok 77 - setParameters throws exception with too many argument ok 78 - setParameters accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - parameters->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - parameters->self() is a valid Bio::MAGE::Association::End ok 84 - accessions set in new() ok 85 - setAccessions returns correct value ok 86 - getAccessions fetches correct value ok 87 - addAccessions returns number of items in list ok 88 - addAccessions adds correct value ok 89 - setAccessions throws exception with non-array argument ok 90 - setAccessions throws exception with bad argument array ok 91 - addAccessions throws exception with no arguments ok 92 - addAccessions throws exception with bad array ok 93 - setAccessions accepts empty array ref ok 94 - getAccessions throws exception with argument ok 95 - setAccessions throws exception with no argument ok 96 - setAccessions throws exception with too many argument ok 97 - setAccessions accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - accessions->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - accessions->self() is a valid Bio::MAGE::Association::End ok 103 - descriptions set in new() ok 104 - setDescriptions returns correct value ok 105 - getDescriptions fetches correct value ok 106 - addDescriptions returns number of items in list ok 107 - addDescriptions adds correct value ok 108 - setDescriptions throws exception with non-array argument ok 109 - setDescriptions throws exception with bad argument array ok 110 - addDescriptions throws exception with no arguments ok 111 - addDescriptions throws exception with bad array ok 112 - setDescriptions accepts empty array ref ok 113 - getDescriptions throws exception with argument ok 114 - setDescriptions throws exception with no argument ok 115 - setDescriptions throws exception with too many argument ok 116 - setDescriptions accepts undef ok 117 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - descriptions->other() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->self() is a valid Bio::MAGE::Association::End ok 122 - auditTrail set in new() ok 123 - setAuditTrail returns correct value ok 124 - getAuditTrail fetches correct value ok 125 - addAuditTrail returns number of items in list ok 126 - addAuditTrail adds correct value ok 127 - setAuditTrail throws exception with non-array argument ok 128 - setAuditTrail throws exception with bad argument array ok 129 - addAuditTrail throws exception with no arguments ok 130 - addAuditTrail throws exception with bad array ok 131 - setAuditTrail accepts empty array ref ok 132 - getAuditTrail throws exception with argument ok 133 - setAuditTrail throws exception with no argument ok 134 - setAuditTrail throws exception with too many argument ok 135 - setAuditTrail accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 142 - setSecurity returns value ok 143 - getSecurity fetches correct value ok 144 - setSecurity throws exception with bad argument ok 145 - getSecurity throws exception with argument ok 146 - setSecurity throws exception with no argument ok 147 - setSecurity throws exception with too many argument ok 148 - setSecurity accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - security->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - security->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 174 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok t/BioAssay.t ..................... 1..132 ok 1 - use Bio::MAGE::BioAssay::BioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssayFactorValues set in new() ok 18 - setBioAssayFactorValues returns correct value ok 19 - getBioAssayFactorValues fetches correct value ok 20 - addBioAssayFactorValues returns number of items in list ok 21 - addBioAssayFactorValues adds correct value ok 22 - setBioAssayFactorValues throws exception with non-array argument ok 23 - setBioAssayFactorValues throws exception with bad argument array ok 24 - addBioAssayFactorValues throws exception with no arguments ok 25 - addBioAssayFactorValues throws exception with bad array ok 26 - setBioAssayFactorValues accepts empty array ref ok 27 - getBioAssayFactorValues throws exception with argument ok 28 - setBioAssayFactorValues throws exception with no argument ok 29 - setBioAssayFactorValues throws exception with too many argument ok 30 - setBioAssayFactorValues accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 36 - channels set in new() ok 37 - setChannels returns correct value ok 38 - getChannels fetches correct value ok 39 - addChannels returns number of items in list ok 40 - addChannels adds correct value ok 41 - setChannels throws exception with non-array argument ok 42 - setChannels throws exception with bad argument array ok 43 - addChannels throws exception with no arguments ok 44 - addChannels throws exception with bad array ok 45 - setChannels accepts empty array ref ok 46 - getChannels throws exception with argument ok 47 - setChannels throws exception with no argument ok 48 - setChannels throws exception with too many argument ok 49 - setChannels accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - channels->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - channels->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 126 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 127 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 128 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 129 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 130 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 131 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 132 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok t/BioAssay_package.t ............. 1..28 ok 1 - use Bio::MAGE::BioAssay; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 4 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 5 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 6 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 7 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 8 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 9 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 10 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 11 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 12 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 13 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 14 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 15 - tagname ok 16 - xml_lists ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - channel_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getChannel_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getChannel_list not empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - bioassay_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getBioAssay_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getBioAssay_list not empty ok t/BioAssayCreation.t ............. 1..154 ok 1 - use Bio::MAGE::BioAssay::BioAssayCreation; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 153 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 154 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioAssayData.t ................. 1..163 ok 1 - use Bio::MAGE::BioAssayData::BioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 133 - setBioDataValues returns value ok 134 - getBioDataValues fetches correct value ok 135 - setBioDataValues throws exception with bad argument ok 136 - getBioDataValues throws exception with argument ok 137 - setBioDataValues throws exception with no argument ok 138 - setBioDataValues throws exception with too many argument ok 139 - setBioDataValues accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 146 - setQuantitationTypeDimension returns value ok 147 - getQuantitationTypeDimension fetches correct value ok 148 - setQuantitationTypeDimension throws exception with bad argument ok 149 - getQuantitationTypeDimension throws exception with argument ok 150 - setQuantitationTypeDimension throws exception with no argument ok 151 - setQuantitationTypeDimension throws exception with too many argument ok 152 - setQuantitationTypeDimension accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 160 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 161 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 162 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 163 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok t/BioAssayData_package.t ......... 1..61 ok 1 - use Bio::MAGE::BioAssayData; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 4 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 5 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 6 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 7 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 8 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 9 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 10 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 11 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 12 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 13 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 14 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 15 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 16 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 19 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 20 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 21 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 22 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 23 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 24 - tagname ok 25 - xml_lists ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - bioassaydimension_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getBioAssayDimension_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getBioAssayDimension_list not empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - designelementdimension_list empty ok 34 - A reference of type 'ARRAY' isa 'ARRAY' ok 35 - getDesignElementDimension_list empty ok 36 - A reference of type 'ARRAY' isa 'ARRAY' ok 37 - getDesignElementDimension_list not empty ok 38 - A reference of type 'ARRAY' isa 'ARRAY' ok 39 - quantitationtypedimension_list empty ok 40 - A reference of type 'ARRAY' isa 'ARRAY' ok 41 - getQuantitationTypeDimension_list empty ok 42 - A reference of type 'ARRAY' isa 'ARRAY' ok 43 - getQuantitationTypeDimension_list not empty ok 44 - A reference of type 'ARRAY' isa 'ARRAY' ok 45 - bioassaymap_list empty ok 46 - A reference of type 'ARRAY' isa 'ARRAY' ok 47 - getBioAssayMap_list empty ok 48 - A reference of type 'ARRAY' isa 'ARRAY' ok 49 - getBioAssayMap_list not empty ok 50 - A reference of type 'ARRAY' isa 'ARRAY' ok 51 - quantitationtypemap_list empty ok 52 - A reference of type 'ARRAY' isa 'ARRAY' ok 53 - getQuantitationTypeMap_list empty ok 54 - A reference of type 'ARRAY' isa 'ARRAY' ok 55 - getQuantitationTypeMap_list not empty ok 56 - A reference of type 'ARRAY' isa 'ARRAY' ok 57 - bioassaydata_list empty ok 58 - A reference of type 'ARRAY' isa 'ARRAY' ok 59 - getBioAssayData_list empty ok 60 - A reference of type 'ARRAY' isa 'ARRAY' ok 61 - getBioAssayData_list not empty ok t/BioAssayDataCluster.t .......... 1..120 ok 1 - use Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - nodes set in new() ok 69 - setNodes returns correct value ok 70 - getNodes fetches correct value ok 71 - addNodes returns number of items in list ok 72 - addNodes adds correct value ok 73 - setNodes throws exception with non-array argument ok 74 - setNodes throws exception with bad argument array ok 75 - addNodes throws exception with no arguments ok 76 - addNodes throws exception with bad array ok 77 - setNodes accepts empty array ref ok 78 - getNodes throws exception with argument ok 79 - setNodes throws exception with no argument ok 80 - setNodes throws exception with too many argument ok 81 - setNodes accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - nodes->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - nodes->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 107 - setClusterBioAssayData returns value ok 108 - getClusterBioAssayData fetches correct value ok 109 - setClusterBioAssayData throws exception with bad argument ok 110 - getClusterBioAssayData throws exception with argument ok 111 - setClusterBioAssayData throws exception with no argument ok 112 - setClusterBioAssayData throws exception with too many argument ok 113 - setClusterBioAssayData accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - clusterBioAssayData->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - clusterBioAssayData->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 120 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok t/BioAssayDatum.t ................ 1..70 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDatum; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 12 - setQuantitationType returns value ok 13 - getQuantitationType fetches correct value ok 14 - setQuantitationType throws exception with bad argument ok 15 - getQuantitationType throws exception with argument ok 16 - setQuantitationType throws exception with no argument ok 17 - setQuantitationType throws exception with too many argument ok 18 - setQuantitationType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - quantitationType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - quantitationType->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 25 - setBioAssay returns value ok 26 - getBioAssay fetches correct value ok 27 - setBioAssay throws exception with bad argument ok 28 - getBioAssay throws exception with argument ok 29 - setBioAssay throws exception with no argument ok 30 - setBioAssay throws exception with too many argument ok 31 - setBioAssay accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - bioAssay->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - bioAssay->self() is a valid Bio::MAGE::Association::End ok 37 - propertySets set in new() ok 38 - setPropertySets returns correct value ok 39 - getPropertySets fetches correct value ok 40 - addPropertySets returns number of items in list ok 41 - addPropertySets adds correct value ok 42 - setPropertySets throws exception with non-array argument ok 43 - setPropertySets throws exception with bad argument array ok 44 - addPropertySets throws exception with no arguments ok 45 - addPropertySets throws exception with bad array ok 46 - setPropertySets accepts empty array ref ok 47 - getPropertySets throws exception with argument ok 48 - setPropertySets throws exception with no argument ok 49 - setPropertySets throws exception with too many argument ok 50 - setPropertySets accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - propertySets->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - propertySets->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 57 - setDesignElement returns value ok 58 - getDesignElement fetches correct value ok 59 - setDesignElement throws exception with bad argument ok 60 - getDesignElement throws exception with argument ok 61 - setDesignElement throws exception with no argument ok 62 - setDesignElement throws exception with too many argument ok 63 - setDesignElement accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - designElement->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - designElement->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok t/BioAssayDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssays set in new() ok 18 - setBioAssays returns correct value ok 19 - getBioAssays fetches correct value ok 20 - addBioAssays returns number of items in list ok 21 - addBioAssays adds correct value ok 22 - setBioAssays throws exception with non-array argument ok 23 - setBioAssays throws exception with bad argument array ok 24 - addBioAssays throws exception with no arguments ok 25 - addBioAssays throws exception with bad array ok 26 - setBioAssays accepts empty array ref ok 27 - getBioAssays throws exception with argument ok 28 - setBioAssays throws exception with no argument ok 29 - setBioAssays throws exception with too many argument ok 30 - setBioAssays accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok t/BioAssayMap.t .................. 1..139 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 56 - setBioAssayMapTarget returns value ok 57 - getBioAssayMapTarget fetches correct value ok 58 - setBioAssayMapTarget throws exception with bad argument ok 59 - getBioAssayMapTarget throws exception with argument ok 60 - setBioAssayMapTarget throws exception with no argument ok 61 - setBioAssayMapTarget throws exception with too many argument ok 62 - setBioAssayMapTarget accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bioAssayMapTarget->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bioAssayMapTarget->self() is a valid Bio::MAGE::Association::End ok 68 - sourceBioAssays set in new() ok 69 - setSourceBioAssays returns correct value ok 70 - getSourceBioAssays fetches correct value ok 71 - addSourceBioAssays returns number of items in list ok 72 - addSourceBioAssays adds correct value ok 73 - setSourceBioAssays throws exception with non-array argument ok 74 - setSourceBioAssays throws exception with bad argument array ok 75 - addSourceBioAssays throws exception with no arguments ok 76 - addSourceBioAssays throws exception with bad array ok 77 - setSourceBioAssays accepts empty array ref ok 78 - getSourceBioAssays throws exception with argument ok 79 - setSourceBioAssays throws exception with no argument ok 80 - setSourceBioAssays throws exception with too many argument ok 81 - setSourceBioAssays accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - sourceBioAssays->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - sourceBioAssays->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok t/BioAssayMapping.t .............. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - bioAssayMaps set in new() ok 25 - setBioAssayMaps returns correct value ok 26 - getBioAssayMaps fetches correct value ok 27 - addBioAssayMaps returns number of items in list ok 28 - addBioAssayMaps adds correct value ok 29 - setBioAssayMaps throws exception with non-array argument ok 30 - setBioAssayMaps throws exception with bad argument array ok 31 - addBioAssayMaps throws exception with no arguments ok 32 - addBioAssayMaps throws exception with bad array ok 33 - setBioAssayMaps accepts empty array ref ok 34 - getBioAssayMaps throws exception with argument ok 35 - setBioAssayMaps throws exception with no argument ok 36 - setBioAssayMaps throws exception with too many argument ok 37 - setBioAssayMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok t/BioAssayTreatment.t ............ 1..135 ok 1 - use Bio::MAGE::BioAssay::BioAssayTreatment; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 37 - setTarget returns value ok 38 - getTarget fetches correct value ok 39 - setTarget throws exception with bad argument ok 40 - getTarget throws exception with argument ok 41 - setTarget throws exception with no argument ok 42 - setTarget throws exception with too many argument ok 43 - setTarget accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - target->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - target->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 50 - setPhysicalBioAssay returns value ok 51 - getPhysicalBioAssay fetches correct value ok 52 - setPhysicalBioAssay throws exception with bad argument ok 53 - getPhysicalBioAssay throws exception with argument ok 54 - setPhysicalBioAssay throws exception with no argument ok 55 - setPhysicalBioAssay throws exception with too many argument ok 56 - setPhysicalBioAssay accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 133 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 134 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 135 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioDataCube.t .................. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataCube; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 3 - package ok 4 - class_name ok 5 - cube new ok 6 - cube getter/setter ok 7 - cube getter throws exception with argument ok 8 - cube setter throws exception with no argument ok 9 - cube setter throws exception with too many argument ok 10 - cube setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - order setter throws exception with bad argument ok 18 - order accepts BDQ ok 19 - order accepts BQD ok 20 - order accepts DBQ ok 21 - order accepts DQB ok 22 - order accepts QBD ok 23 - order accepts QDB ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataTuples.t ................ 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataTuples; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 3 - package ok 4 - class_name ok 5 - bioAssayTupleData set in new() ok 6 - setBioAssayTupleData returns correct value ok 7 - getBioAssayTupleData fetches correct value ok 8 - addBioAssayTupleData returns number of items in list ok 9 - addBioAssayTupleData adds correct value ok 10 - setBioAssayTupleData throws exception with non-array argument ok 11 - setBioAssayTupleData throws exception with bad argument array ok 12 - addBioAssayTupleData throws exception with no arguments ok 13 - addBioAssayTupleData throws exception with bad array ok 14 - setBioAssayTupleData accepts empty array ref ok 15 - getBioAssayTupleData throws exception with argument ok 16 - setBioAssayTupleData throws exception with no argument ok 17 - setBioAssayTupleData throws exception with too many argument ok 18 - setBioAssayTupleData accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - bioAssayTupleData->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - bioAssayTupleData->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataValues.t ................ 1..29 ok 1 - use Bio::MAGE::BioAssayData::BioDataValues; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 25 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 26 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 27 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 28 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 29 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok t/BioEvent.t ..................... 1..119 ok 1 - use Bio::MAGE::BioEvent::BioEvent; ok 2 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 107 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 108 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 109 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 110 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 111 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok 112 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 113 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 114 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 115 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok 116 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 117 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok t/BioEvent_package.t ............. 1..7 ok 1 - use Bio::MAGE::BioEvent; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 4 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 5 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 6 - tagname ok 7 - xml_lists ok t/BioMaterial.t .................. 1..164 ok 1 - use Bio::MAGE::BioMaterial::BioMaterial; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setMaterialType returns value ok 146 - getMaterialType fetches correct value ok 147 - setMaterialType throws exception with bad argument ok 148 - getMaterialType throws exception with argument ok 149 - setMaterialType throws exception with no argument ok 150 - setMaterialType throws exception with too many argument ok 151 - setMaterialType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - materialType->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - materialType->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 158 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 159 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 160 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 161 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 162 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 163 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 164 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok t/BioMaterial_package.t .......... 1..25 ok 1 - use Bio::MAGE::BioMaterial; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 4 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 5 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 6 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 7 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 8 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 9 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 10 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 11 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 12 - tagname ok 13 - xml_lists ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - compound_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getCompound_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getCompound_list not empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - biomaterial_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getBioMaterial_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getBioMaterial_list not empty ok t/BioMaterialMeasurement.t ....... 1..51 ok 1 - use Bio::MAGE::BioMaterial::BioMaterialMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 6 - setBioMaterial returns value ok 7 - getBioMaterial fetches correct value ok 8 - setBioMaterial throws exception with bad argument ok 9 - getBioMaterial throws exception with argument ok 10 - setBioMaterial throws exception with no argument ok 11 - setBioMaterial throws exception with too many argument ok 12 - setBioMaterial accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 19 - setMeasurement returns value ok 20 - getMeasurement fetches correct value ok 21 - setMeasurement throws exception with bad argument ok 22 - getMeasurement throws exception with argument ok 23 - setMeasurement throws exception with no argument ok 24 - setMeasurement throws exception with too many argument ok 25 - setMeasurement accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - measurement->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - measurement->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok t/BioSample.t .................... 1..171 ok 1 - use Bio::MAGE::BioMaterial::BioSample; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 158 - setMaterialType returns value ok 159 - getMaterialType fetches correct value ok 160 - setMaterialType throws exception with bad argument ok 161 - getMaterialType throws exception with argument ok 162 - setMaterialType throws exception with no argument ok 163 - setMaterialType throws exception with too many argument ok 164 - setMaterialType accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - materialType->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - materialType->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 171 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BioSequence.t .................. 1..208 ok 1 - use Bio::MAGE::BioSequence::BioSequence; ok 2 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 3 - package ok 4 - class_name ok 5 - length new ok 6 - length getter/setter ok 7 - length getter throws exception with argument ok 8 - length setter throws exception with no argument ok 9 - length setter throws exception with too many argument ok 10 - length setter accepts undef ok 11 - isApproximateLength new ok 12 - isApproximateLength getter/setter ok 13 - isApproximateLength getter throws exception with argument ok 14 - isApproximateLength setter throws exception with no argument ok 15 - isApproximateLength setter throws exception with too many argument ok 16 - isApproximateLength setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - sequence new ok 24 - sequence getter/setter ok 25 - sequence getter throws exception with argument ok 26 - sequence setter throws exception with no argument ok 27 - sequence setter throws exception with too many argument ok 28 - sequence setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - isCircular new ok 36 - isCircular getter/setter ok 37 - isCircular getter throws exception with argument ok 38 - isCircular setter throws exception with no argument ok 39 - isCircular setter throws exception with too many argument ok 40 - isCircular setter accepts undef ok 41 - sequenceDatabases set in new() ok 42 - setSequenceDatabases returns correct value ok 43 - getSequenceDatabases fetches correct value ok 44 - addSequenceDatabases returns number of items in list ok 45 - addSequenceDatabases adds correct value ok 46 - setSequenceDatabases throws exception with non-array argument ok 47 - setSequenceDatabases throws exception with bad argument array ok 48 - addSequenceDatabases throws exception with no arguments ok 49 - addSequenceDatabases throws exception with bad array ok 50 - setSequenceDatabases accepts empty array ref ok 51 - getSequenceDatabases throws exception with argument ok 52 - setSequenceDatabases throws exception with no argument ok 53 - setSequenceDatabases throws exception with too many argument ok 54 - setSequenceDatabases accepts undef ok 55 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 56 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 57 - sequenceDatabases->other() is a valid Bio::MAGE::Association::End ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - sequenceDatabases->self() is a valid Bio::MAGE::Association::End ok 60 - auditTrail set in new() ok 61 - setAuditTrail returns correct value ok 62 - getAuditTrail fetches correct value ok 63 - addAuditTrail returns number of items in list ok 64 - addAuditTrail adds correct value ok 65 - setAuditTrail throws exception with non-array argument ok 66 - setAuditTrail throws exception with bad argument array ok 67 - addAuditTrail throws exception with no arguments ok 68 - addAuditTrail throws exception with bad array ok 69 - setAuditTrail accepts empty array ref ok 70 - getAuditTrail throws exception with argument ok 71 - setAuditTrail throws exception with no argument ok 72 - setAuditTrail throws exception with too many argument ok 73 - setAuditTrail accepts undef ok 74 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 75 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 76 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 80 - setPolymerType returns value ok 81 - getPolymerType fetches correct value ok 82 - setPolymerType throws exception with bad argument ok 83 - getPolymerType throws exception with argument ok 84 - setPolymerType throws exception with no argument ok 85 - setPolymerType throws exception with too many argument ok 86 - setPolymerType accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - polymerType->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - polymerType->self() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 93 - setSpecies returns value ok 94 - getSpecies fetches correct value ok 95 - setSpecies throws exception with bad argument ok 96 - getSpecies throws exception with argument ok 97 - setSpecies throws exception with no argument ok 98 - setSpecies throws exception with too many argument ok 99 - setSpecies accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - species->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - species->self() is a valid Bio::MAGE::Association::End ok 105 - propertySets set in new() ok 106 - setPropertySets returns correct value ok 107 - getPropertySets fetches correct value ok 108 - addPropertySets returns number of items in list ok 109 - addPropertySets adds correct value ok 110 - setPropertySets throws exception with non-array argument ok 111 - setPropertySets throws exception with bad argument array ok 112 - addPropertySets throws exception with no arguments ok 113 - addPropertySets throws exception with bad array ok 114 - setPropertySets accepts empty array ref ok 115 - getPropertySets throws exception with argument ok 116 - setPropertySets throws exception with no argument ok 117 - setPropertySets throws exception with too many argument ok 118 - setPropertySets accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - propertySets->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->self() is a valid Bio::MAGE::Association::End ok 124 - ontologyEntries set in new() ok 125 - setOntologyEntries returns correct value ok 126 - getOntologyEntries fetches correct value ok 127 - addOntologyEntries returns number of items in list ok 128 - addOntologyEntries adds correct value ok 129 - setOntologyEntries throws exception with non-array argument ok 130 - setOntologyEntries throws exception with bad argument array ok 131 - addOntologyEntries throws exception with no arguments ok 132 - addOntologyEntries throws exception with bad array ok 133 - setOntologyEntries accepts empty array ref ok 134 - getOntologyEntries throws exception with argument ok 135 - setOntologyEntries throws exception with no argument ok 136 - setOntologyEntries throws exception with too many argument ok 137 - setOntologyEntries accepts undef ok 138 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - ontologyEntries->other() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - ontologyEntries->self() is a valid Bio::MAGE::Association::End ok 143 - descriptions set in new() ok 144 - setDescriptions returns correct value ok 145 - getDescriptions fetches correct value ok 146 - addDescriptions returns number of items in list ok 147 - addDescriptions adds correct value ok 148 - setDescriptions throws exception with non-array argument ok 149 - setDescriptions throws exception with bad argument array ok 150 - addDescriptions throws exception with no arguments ok 151 - addDescriptions throws exception with bad array ok 152 - setDescriptions accepts empty array ref ok 153 - getDescriptions throws exception with argument ok 154 - setDescriptions throws exception with no argument ok 155 - setDescriptions throws exception with too many argument ok 156 - setDescriptions accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - descriptions->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - descriptions->self() is a valid Bio::MAGE::Association::End ok 162 - seqFeatures set in new() ok 163 - setSeqFeatures returns correct value ok 164 - getSeqFeatures fetches correct value ok 165 - addSeqFeatures returns number of items in list ok 166 - addSeqFeatures adds correct value ok 167 - setSeqFeatures throws exception with non-array argument ok 168 - setSeqFeatures throws exception with bad argument array ok 169 - addSeqFeatures throws exception with no arguments ok 170 - addSeqFeatures throws exception with bad array ok 171 - setSeqFeatures accepts empty array ref ok 172 - getSeqFeatures throws exception with argument ok 173 - setSeqFeatures throws exception with no argument ok 174 - setSeqFeatures throws exception with too many argument ok 175 - setSeqFeatures accepts undef ok 176 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 177 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 178 - seqFeatures->other() is a valid Bio::MAGE::Association::End ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - seqFeatures->self() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 182 - setSecurity returns value ok 183 - getSecurity fetches correct value ok 184 - setSecurity throws exception with bad argument ok 185 - getSecurity throws exception with argument ok 186 - setSecurity throws exception with no argument ok 187 - setSecurity throws exception with too many argument ok 188 - setSecurity accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - security->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - security->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 195 - setType returns value ok 196 - getType fetches correct value ok 197 - setType throws exception with bad argument ok 198 - getType throws exception with argument ok 199 - setType throws exception with no argument ok 200 - setType throws exception with too many argument ok 201 - setType accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - type->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - type->self() is a valid Bio::MAGE::Association::End ok 207 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 208 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok t/BioSequence_package.t .......... 1..15 ok 1 - use Bio::MAGE::BioSequence; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 4 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 5 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 6 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 7 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - biosequence_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioSequence_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioSequence_list not empty ok t/BioSource.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::BioSource; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceContact set in new() ok 18 - setSourceContact returns correct value ok 19 - getSourceContact fetches correct value ok 20 - addSourceContact returns number of items in list ok 21 - addSourceContact adds correct value ok 22 - setSourceContact throws exception with non-array argument ok 23 - setSourceContact throws exception with bad argument array ok 24 - addSourceContact throws exception with no arguments ok 25 - addSourceContact throws exception with bad array ok 26 - setSourceContact accepts empty array ref ok 27 - getSourceContact throws exception with argument ok 28 - setSourceContact throws exception with no argument ok 29 - setSourceContact throws exception with too many argument ok 30 - setSourceContact accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceContact->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceContact->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - qualityControlStatistics set in new() ok 75 - setQualityControlStatistics returns correct value ok 76 - getQualityControlStatistics fetches correct value ok 77 - addQualityControlStatistics returns number of items in list ok 78 - addQualityControlStatistics adds correct value ok 79 - setQualityControlStatistics throws exception with non-array argument ok 80 - setQualityControlStatistics throws exception with bad argument array ok 81 - addQualityControlStatistics throws exception with no arguments ok 82 - addQualityControlStatistics throws exception with bad array ok 83 - setQualityControlStatistics accepts empty array ref ok 84 - getQualityControlStatistics throws exception with argument ok 85 - setQualityControlStatistics throws exception with no argument ok 86 - setQualityControlStatistics throws exception with too many argument ok 87 - setQualityControlStatistics accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - characteristics set in new() ok 113 - setCharacteristics returns correct value ok 114 - getCharacteristics fetches correct value ok 115 - addCharacteristics returns number of items in list ok 116 - addCharacteristics adds correct value ok 117 - setCharacteristics throws exception with non-array argument ok 118 - setCharacteristics throws exception with bad argument array ok 119 - addCharacteristics throws exception with no arguments ok 120 - addCharacteristics throws exception with bad array ok 121 - setCharacteristics accepts empty array ref ok 122 - getCharacteristics throws exception with argument ok 123 - setCharacteristics throws exception with no argument ok 124 - setCharacteristics throws exception with too many argument ok 125 - setCharacteristics accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - characteristics->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - characteristics->self() is a valid Bio::MAGE::Association::End ok 131 - treatments set in new() ok 132 - setTreatments returns correct value ok 133 - getTreatments fetches correct value ok 134 - addTreatments returns number of items in list ok 135 - addTreatments adds correct value ok 136 - setTreatments throws exception with non-array argument ok 137 - setTreatments throws exception with bad argument array ok 138 - addTreatments throws exception with no arguments ok 139 - addTreatments throws exception with bad array ok 140 - setTreatments accepts empty array ref ok 141 - getTreatments throws exception with argument ok 142 - setTreatments throws exception with no argument ok 143 - setTreatments throws exception with too many argument ok 144 - setTreatments accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - treatments->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - treatments->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BQS_package.t .................. 1..6 ok 1 - use Bio::MAGE::BQS; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 4 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 5 - tagname ok 6 - xml_lists ok t/Channel.t ...................... 1..107 ok 1 - use Bio::MAGE::BioAssay::Channel; ok 2 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - labels set in new() ok 88 - setLabels returns correct value ok 89 - getLabels fetches correct value ok 90 - addLabels returns number of items in list ok 91 - addLabels adds correct value ok 92 - setLabels throws exception with non-array argument ok 93 - setLabels throws exception with bad argument array ok 94 - addLabels throws exception with no arguments ok 95 - addLabels throws exception with bad array ok 96 - setLabels accepts empty array ref ok 97 - getLabels throws exception with argument ok 98 - setLabels throws exception with no argument ok 99 - setLabels throws exception with too many argument ok 100 - setLabels accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - labels->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - labels->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok t/CompositeCompositeMap.t ........ 1..139 ok 1 - use Bio::MAGE::DesignElement::CompositeCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 107 - setCompositeSequence returns value ok 108 - getCompositeSequence fetches correct value ok 109 - setCompositeSequence throws exception with bad argument ok 110 - getCompositeSequence throws exception with argument ok 111 - setCompositeSequence throws exception with no argument ok 112 - setCompositeSequence throws exception with too many argument ok 113 - setCompositeSequence accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 119 - compositePositionSources set in new() ok 120 - setCompositePositionSources returns correct value ok 121 - getCompositePositionSources fetches correct value ok 122 - addCompositePositionSources returns number of items in list ok 123 - addCompositePositionSources adds correct value ok 124 - setCompositePositionSources throws exception with non-array argument ok 125 - setCompositePositionSources throws exception with bad argument array ok 126 - addCompositePositionSources throws exception with no arguments ok 127 - addCompositePositionSources throws exception with bad array ok 128 - setCompositePositionSources accepts empty array ref ok 129 - getCompositePositionSources throws exception with argument ok 130 - setCompositePositionSources throws exception with no argument ok 131 - setCompositePositionSources throws exception with too many argument ok 132 - setCompositePositionSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositePositionSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositePositionSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/CompositeGroup.t ............... 1..139 ok 1 - use Bio::MAGE::ArrayDesign::CompositeGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - compositeSequences set in new() ok 37 - setCompositeSequences returns correct value ok 38 - getCompositeSequences fetches correct value ok 39 - addCompositeSequences returns number of items in list ok 40 - addCompositeSequences adds correct value ok 41 - setCompositeSequences throws exception with non-array argument ok 42 - setCompositeSequences throws exception with bad argument array ok 43 - addCompositeSequences throws exception with no arguments ok 44 - addCompositeSequences throws exception with bad array ok 45 - setCompositeSequences accepts empty array ref ok 46 - getCompositeSequences throws exception with argument ok 47 - setCompositeSequences throws exception with no argument ok 48 - setCompositeSequences throws exception with too many argument ok 49 - setCompositeSequences accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/CompositePosition.t ............ 1..69 ok 1 - use Bio::MAGE::DesignElement::CompositePosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 18 - setComposite returns value ok 19 - getComposite fetches correct value ok 20 - setComposite throws exception with bad argument ok 21 - getComposite throws exception with argument ok 22 - setComposite throws exception with no argument ok 23 - setComposite throws exception with too many argument ok 24 - setComposite accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - composite->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - composite->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/CompositeSequence.t ............ 1..158 ok 1 - use Bio::MAGE::DesignElement::CompositeSequence; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - compositeCompositeMaps set in new() ok 31 - setCompositeCompositeMaps returns correct value ok 32 - getCompositeCompositeMaps fetches correct value ok 33 - addCompositeCompositeMaps returns number of items in list ok 34 - addCompositeCompositeMaps adds correct value ok 35 - setCompositeCompositeMaps throws exception with non-array argument ok 36 - setCompositeCompositeMaps throws exception with bad argument array ok 37 - addCompositeCompositeMaps throws exception with no arguments ok 38 - addCompositeCompositeMaps throws exception with bad array ok 39 - setCompositeCompositeMaps accepts empty array ref ok 40 - getCompositeCompositeMaps throws exception with argument ok 41 - setCompositeCompositeMaps throws exception with no argument ok 42 - setCompositeCompositeMaps throws exception with too many argument ok 43 - setCompositeCompositeMaps accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - compositeCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - compositeCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - biologicalCharacteristics set in new() ok 120 - setBiologicalCharacteristics returns correct value ok 121 - getBiologicalCharacteristics fetches correct value ok 122 - addBiologicalCharacteristics returns number of items in list ok 123 - addBiologicalCharacteristics adds correct value ok 124 - setBiologicalCharacteristics throws exception with non-array argument ok 125 - setBiologicalCharacteristics throws exception with bad argument array ok 126 - addBiologicalCharacteristics throws exception with no arguments ok 127 - addBiologicalCharacteristics throws exception with bad array ok 128 - setBiologicalCharacteristics accepts empty array ref ok 129 - getBiologicalCharacteristics throws exception with argument ok 130 - setBiologicalCharacteristics throws exception with no argument ok 131 - setBiologicalCharacteristics throws exception with too many argument ok 132 - setBiologicalCharacteristics accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - biologicalCharacteristics->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - biologicalCharacteristics->self() is a valid Bio::MAGE::Association::End ok 138 - reporterCompositeMaps set in new() ok 139 - setReporterCompositeMaps returns correct value ok 140 - getReporterCompositeMaps fetches correct value ok 141 - addReporterCompositeMaps returns number of items in list ok 142 - addReporterCompositeMaps adds correct value ok 143 - setReporterCompositeMaps throws exception with non-array argument ok 144 - setReporterCompositeMaps throws exception with bad argument array ok 145 - addReporterCompositeMaps throws exception with no arguments ok 146 - addReporterCompositeMaps throws exception with bad array ok 147 - setReporterCompositeMaps accepts empty array ref ok 148 - getReporterCompositeMaps throws exception with argument ok 149 - setReporterCompositeMaps throws exception with no argument ok 150 - setReporterCompositeMaps throws exception with too many argument ok 151 - setReporterCompositeMaps accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - reporterCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - reporterCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 158 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/CompositeSequenceDimension.t ... 1..107 ok 1 - use Bio::MAGE::BioAssayData::CompositeSequenceDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - compositeSequences set in new() ok 18 - setCompositeSequences returns correct value ok 19 - getCompositeSequences fetches correct value ok 20 - addCompositeSequences returns number of items in list ok 21 - addCompositeSequences adds correct value ok 22 - setCompositeSequences throws exception with non-array argument ok 23 - setCompositeSequences throws exception with bad argument array ok 24 - addCompositeSequences throws exception with no arguments ok 25 - addCompositeSequences throws exception with bad array ok 26 - setCompositeSequences accepts empty array ref ok 27 - getCompositeSequences throws exception with argument ok 28 - setCompositeSequences throws exception with no argument ok 29 - setCompositeSequences throws exception with too many argument ok 30 - setCompositeSequences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/Compound.t ..................... 1..145 ok 1 - use Bio::MAGE::BioMaterial::Compound; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - isSolvent new ok 18 - isSolvent getter/setter ok 19 - isSolvent getter throws exception with argument ok 20 - isSolvent setter throws exception with no argument ok 21 - isSolvent setter throws exception with too many argument ok 22 - isSolvent setter accepts undef ok 23 - compoundIndices set in new() ok 24 - setCompoundIndices returns correct value ok 25 - getCompoundIndices fetches correct value ok 26 - addCompoundIndices returns number of items in list ok 27 - addCompoundIndices adds correct value ok 28 - setCompoundIndices throws exception with non-array argument ok 29 - setCompoundIndices throws exception with bad argument array ok 30 - addCompoundIndices throws exception with no arguments ok 31 - addCompoundIndices throws exception with bad array ok 32 - setCompoundIndices accepts empty array ref ok 33 - getCompoundIndices throws exception with argument ok 34 - setCompoundIndices throws exception with no argument ok 35 - setCompoundIndices throws exception with too many argument ok 36 - setCompoundIndices accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - compoundIndices->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - compoundIndices->self() is a valid Bio::MAGE::Association::End ok 42 - componentCompounds set in new() ok 43 - setComponentCompounds returns correct value ok 44 - getComponentCompounds fetches correct value ok 45 - addComponentCompounds returns number of items in list ok 46 - addComponentCompounds adds correct value ok 47 - setComponentCompounds throws exception with non-array argument ok 48 - setComponentCompounds throws exception with bad argument array ok 49 - addComponentCompounds throws exception with no arguments ok 50 - addComponentCompounds throws exception with bad array ok 51 - setComponentCompounds accepts empty array ref ok 52 - getComponentCompounds throws exception with argument ok 53 - setComponentCompounds throws exception with no argument ok 54 - setComponentCompounds throws exception with too many argument ok 55 - setComponentCompounds accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - componentCompounds->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - componentCompounds->self() is a valid Bio::MAGE::Association::End ok 61 - descriptions set in new() ok 62 - setDescriptions returns correct value ok 63 - getDescriptions fetches correct value ok 64 - addDescriptions returns number of items in list ok 65 - addDescriptions adds correct value ok 66 - setDescriptions throws exception with non-array argument ok 67 - setDescriptions throws exception with bad argument array ok 68 - addDescriptions throws exception with no arguments ok 69 - addDescriptions throws exception with bad array ok 70 - setDescriptions accepts empty array ref ok 71 - getDescriptions throws exception with argument ok 72 - setDescriptions throws exception with no argument ok 73 - setDescriptions throws exception with too many argument ok 74 - setDescriptions accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - descriptions->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - descriptions->self() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 81 - setExternalLIMS returns value ok 82 - getExternalLIMS fetches correct value ok 83 - setExternalLIMS throws exception with bad argument ok 84 - getExternalLIMS throws exception with argument ok 85 - setExternalLIMS throws exception with no argument ok 86 - setExternalLIMS throws exception with too many argument ok 87 - setExternalLIMS accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - externalLIMS->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - externalLIMS->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - auditTrail set in new() ok 107 - setAuditTrail returns correct value ok 108 - getAuditTrail fetches correct value ok 109 - addAuditTrail returns number of items in list ok 110 - addAuditTrail adds correct value ok 111 - setAuditTrail throws exception with non-array argument ok 112 - setAuditTrail throws exception with bad argument array ok 113 - addAuditTrail throws exception with no arguments ok 114 - addAuditTrail throws exception with bad array ok 115 - setAuditTrail accepts empty array ref ok 116 - getAuditTrail throws exception with argument ok 117 - setAuditTrail throws exception with no argument ok 118 - setAuditTrail throws exception with too many argument ok 119 - setAuditTrail accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 125 - propertySets set in new() ok 126 - setPropertySets returns correct value ok 127 - getPropertySets fetches correct value ok 128 - addPropertySets returns number of items in list ok 129 - addPropertySets adds correct value ok 130 - setPropertySets throws exception with non-array argument ok 131 - setPropertySets throws exception with bad argument array ok 132 - addPropertySets throws exception with no arguments ok 133 - addPropertySets throws exception with bad array ok 134 - setPropertySets accepts empty array ref ok 135 - getPropertySets throws exception with argument ok 136 - setPropertySets throws exception with no argument ok 137 - setPropertySets throws exception with too many argument ok 138 - setPropertySets accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - propertySets->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok t/CompoundMeasurement.t .......... 1..51 ok 1 - use Bio::MAGE::BioMaterial::CompoundMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 6 - setMeasurement returns value ok 7 - getMeasurement fetches correct value ok 8 - setMeasurement throws exception with bad argument ok 9 - getMeasurement throws exception with argument ok 10 - setMeasurement throws exception with no argument ok 11 - setMeasurement throws exception with too many argument ok 12 - setMeasurement accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - measurement->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - measurement->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 19 - setCompound returns value ok 20 - getCompound fetches correct value ok 21 - setCompound throws exception with bad argument ok 22 - getCompound throws exception with argument ok 23 - setCompound throws exception with no argument ok 24 - setCompound throws exception with too many argument ok 25 - setCompound accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - compound->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - compound->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok t/ConcentrationUnit.t ............ 1..51 ok 1 - use Bio::MAGE::Measurement::ConcentrationUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts M ok 19 - unitNameCV accepts mM ok 20 - unitNameCV accepts uM ok 21 - unitNameCV accepts nM ok 22 - unitNameCV accepts pM ok 23 - unitNameCV accepts fM ok 24 - unitNameCV accepts mg_per_mL ok 25 - unitNameCV accepts mL_per_L ok 26 - unitNameCV accepts g_per_L ok 27 - unitNameCV accepts gram_percent ok 28 - unitNameCV accepts mass_per_volume_percent ok 29 - unitNameCV accepts mass_per_mass_percent ok 30 - unitNameCV accepts other ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 51 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/ConfidenceIndicator.t .......... 1..190 ok 1 - use Bio::MAGE::QuantitationType::ConfidenceIndicator; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 56 - setChannel returns value ok 57 - getChannel fetches correct value ok 58 - setChannel throws exception with bad argument ok 59 - getChannel throws exception with argument ok 60 - setChannel throws exception with no argument ok 61 - setChannel throws exception with too many argument ok 62 - setChannel accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - channel->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - channel->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 185 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 186 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 187 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 188 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 189 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 190 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Contact.t ...................... 1..147 ok 1 - use Bio::MAGE::AuditAndSecurity::Contact; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - tollFreePhone new ok 24 - tollFreePhone getter/setter ok 25 - tollFreePhone getter throws exception with argument ok 26 - tollFreePhone setter throws exception with no argument ok 27 - tollFreePhone setter throws exception with too many argument ok 28 - tollFreePhone setter accepts undef ok 29 - fax new ok 30 - fax getter/setter ok 31 - fax getter throws exception with argument ok 32 - fax setter throws exception with no argument ok 33 - fax setter throws exception with too many argument ok 34 - fax setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - descriptions set in new() ok 73 - setDescriptions returns correct value ok 74 - getDescriptions fetches correct value ok 75 - addDescriptions returns number of items in list ok 76 - addDescriptions adds correct value ok 77 - setDescriptions throws exception with non-array argument ok 78 - setDescriptions throws exception with bad argument array ok 79 - addDescriptions throws exception with no arguments ok 80 - addDescriptions throws exception with bad array ok 81 - setDescriptions accepts empty array ref ok 82 - getDescriptions throws exception with argument ok 83 - setDescriptions throws exception with no argument ok 84 - setDescriptions throws exception with too many argument ok 85 - setDescriptions accepts undef ok 86 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - descriptions->other() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->self() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 92 - setSecurity returns value ok 93 - getSecurity fetches correct value ok 94 - setSecurity throws exception with bad argument ok 95 - getSecurity throws exception with argument ok 96 - setSecurity throws exception with no argument ok 97 - setSecurity throws exception with too many argument ok 98 - setSecurity accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - security->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - propertySets set in new() ok 124 - setPropertySets returns correct value ok 125 - getPropertySets fetches correct value ok 126 - addPropertySets returns number of items in list ok 127 - addPropertySets adds correct value ok 128 - setPropertySets throws exception with non-array argument ok 129 - setPropertySets throws exception with bad argument array ok 130 - addPropertySets throws exception with no arguments ok 131 - addPropertySets throws exception with bad array ok 132 - setPropertySets accepts empty array ref ok 133 - getPropertySets throws exception with argument ok 134 - setPropertySets throws exception with no argument ok 135 - setPropertySets throws exception with too many argument ok 136 - setPropertySets accepts undef ok 137 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 138 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 139 - propertySets->other() is a valid Bio::MAGE::Association::End ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->self() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 143 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 144 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 147 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok t/Database.t ..................... 1..119 ok 1 - use Bio::MAGE::Description::Database; ok 2 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - contacts set in new() ok 30 - setContacts returns correct value ok 31 - getContacts fetches correct value ok 32 - addContacts returns number of items in list ok 33 - addContacts adds correct value ok 34 - setContacts throws exception with non-array argument ok 35 - setContacts throws exception with bad argument array ok 36 - addContacts throws exception with no arguments ok 37 - addContacts throws exception with bad array ok 38 - setContacts accepts empty array ref ok 39 - getContacts throws exception with argument ok 40 - setContacts throws exception with no argument ok 41 - setContacts throws exception with too many argument ok 42 - setContacts accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - contacts->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - contacts->self() is a valid Bio::MAGE::Association::End ok 48 - descriptions set in new() ok 49 - setDescriptions returns correct value ok 50 - getDescriptions fetches correct value ok 51 - addDescriptions returns number of items in list ok 52 - addDescriptions adds correct value ok 53 - setDescriptions throws exception with non-array argument ok 54 - setDescriptions throws exception with bad argument array ok 55 - addDescriptions throws exception with no arguments ok 56 - addDescriptions throws exception with bad array ok 57 - setDescriptions accepts empty array ref ok 58 - getDescriptions throws exception with argument ok 59 - setDescriptions throws exception with no argument ok 60 - setDescriptions throws exception with too many argument ok 61 - setDescriptions accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - descriptions->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 68 - setSecurity returns value ok 69 - getSecurity fetches correct value ok 70 - setSecurity throws exception with bad argument ok 71 - getSecurity throws exception with argument ok 72 - setSecurity throws exception with no argument ok 73 - setSecurity throws exception with too many argument ok 74 - setSecurity accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - security->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok t/DatabaseEntry.t ................ 1..69 ok 1 - use Bio::MAGE::Description::DatabaseEntry; ok 2 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 3 - package ok 4 - class_name ok 5 - accessionVersion new ok 6 - accessionVersion getter/setter ok 7 - accessionVersion getter throws exception with argument ok 8 - accessionVersion setter throws exception with no argument ok 9 - accessionVersion setter throws exception with too many argument ok 10 - accessionVersion setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - accession new ok 18 - accession getter/setter ok 19 - accession getter throws exception with argument ok 20 - accession setter throws exception with no argument ok 21 - accession setter throws exception with too many argument ok 22 - accession setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 24 - setDatabase returns value ok 25 - getDatabase fetches correct value ok 26 - setDatabase throws exception with bad argument ok 27 - getDatabase throws exception with argument ok 28 - setDatabase throws exception with no argument ok 29 - setDatabase throws exception with too many argument ok 30 - setDatabase accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - database->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - database->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - setType returns value ok 38 - getType fetches correct value ok 39 - setType throws exception with bad argument ok 40 - getType throws exception with argument ok 41 - setType throws exception with no argument ok 42 - setType throws exception with too many argument ok 43 - setType accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - type->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - type->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 69 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok t/DerivedBioAssay.t .............. 1..177 ok 1 - use Bio::MAGE::BioAssay::DerivedBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 113 - setSecurity returns value ok 114 - getSecurity fetches correct value ok 115 - setSecurity throws exception with bad argument ok 116 - getSecurity throws exception with argument ok 117 - setSecurity throws exception with no argument ok 118 - setSecurity throws exception with too many argument ok 119 - setSecurity accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - security->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - security->self() is a valid Bio::MAGE::Association::End ok 125 - derivedBioAssayMap set in new() ok 126 - setDerivedBioAssayMap returns correct value ok 127 - getDerivedBioAssayMap fetches correct value ok 128 - addDerivedBioAssayMap returns number of items in list ok 129 - addDerivedBioAssayMap adds correct value ok 130 - setDerivedBioAssayMap throws exception with non-array argument ok 131 - setDerivedBioAssayMap throws exception with bad argument array ok 132 - addDerivedBioAssayMap throws exception with no arguments ok 133 - addDerivedBioAssayMap throws exception with bad array ok 134 - setDerivedBioAssayMap accepts empty array ref ok 135 - getDerivedBioAssayMap throws exception with argument ok 136 - setDerivedBioAssayMap throws exception with no argument ok 137 - setDerivedBioAssayMap throws exception with too many argument ok 138 - setDerivedBioAssayMap accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - derivedBioAssayMap->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - derivedBioAssayMap->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - derivedBioAssayData set in new() ok 158 - setDerivedBioAssayData returns correct value ok 159 - getDerivedBioAssayData fetches correct value ok 160 - addDerivedBioAssayData returns number of items in list ok 161 - addDerivedBioAssayData adds correct value ok 162 - setDerivedBioAssayData throws exception with non-array argument ok 163 - setDerivedBioAssayData throws exception with bad argument array ok 164 - addDerivedBioAssayData throws exception with no arguments ok 165 - addDerivedBioAssayData throws exception with bad array ok 166 - setDerivedBioAssayData accepts empty array ref ok 167 - getDerivedBioAssayData throws exception with argument ok 168 - setDerivedBioAssayData throws exception with no argument ok 169 - setDerivedBioAssayData throws exception with too many argument ok 170 - setDerivedBioAssayData accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - derivedBioAssayData->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - derivedBioAssayData->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/DerivedBioAssayData.t .......... 1..172 ok 1 - use Bio::MAGE::BioAssayData::DerivedBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - setProducerTransformation returns value ok 19 - getProducerTransformation fetches correct value ok 20 - setProducerTransformation throws exception with bad argument ok 21 - getProducerTransformation throws exception with argument ok 22 - setProducerTransformation throws exception with no argument ok 23 - setProducerTransformation throws exception with too many argument ok 24 - setProducerTransformation accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - producerTransformation->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - producerTransformation->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 31 - setBioAssayDimension returns value ok 32 - getBioAssayDimension fetches correct value ok 33 - setBioAssayDimension throws exception with bad argument ok 34 - getBioAssayDimension throws exception with argument ok 35 - setBioAssayDimension throws exception with no argument ok 36 - setBioAssayDimension throws exception with too many argument ok 37 - setBioAssayDimension accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - summaryStatistics set in new() ok 82 - setSummaryStatistics returns correct value ok 83 - getSummaryStatistics fetches correct value ok 84 - addSummaryStatistics returns number of items in list ok 85 - addSummaryStatistics adds correct value ok 86 - setSummaryStatistics throws exception with non-array argument ok 87 - setSummaryStatistics throws exception with bad argument array ok 88 - addSummaryStatistics throws exception with no arguments ok 89 - addSummaryStatistics throws exception with bad array ok 90 - setSummaryStatistics accepts empty array ref ok 91 - getSummaryStatistics throws exception with argument ok 92 - setSummaryStatistics throws exception with no argument ok 93 - setSummaryStatistics throws exception with too many argument ok 94 - setSummaryStatistics accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 120 - setDesignElementDimension returns value ok 121 - getDesignElementDimension fetches correct value ok 122 - setDesignElementDimension throws exception with bad argument ok 123 - getDesignElementDimension throws exception with argument ok 124 - setDesignElementDimension throws exception with no argument ok 125 - setDesignElementDimension throws exception with too many argument ok 126 - setDesignElementDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 133 - setQuantitationTypeDimension returns value ok 134 - getQuantitationTypeDimension fetches correct value ok 135 - setQuantitationTypeDimension throws exception with bad argument ok 136 - getQuantitationTypeDimension throws exception with argument ok 137 - setQuantitationTypeDimension throws exception with no argument ok 138 - setQuantitationTypeDimension throws exception with too many argument ok 139 - setQuantitationTypeDimension accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 146 - setSecurity returns value ok 147 - getSecurity fetches correct value ok 148 - setSecurity throws exception with bad argument ok 149 - getSecurity throws exception with argument ok 150 - setSecurity throws exception with no argument ok 151 - setSecurity throws exception with too many argument ok 152 - setSecurity accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - security->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - security->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 159 - setBioDataValues returns value ok 160 - getBioDataValues fetches correct value ok 161 - setBioDataValues throws exception with bad argument ok 162 - getBioDataValues throws exception with argument ok 163 - setBioDataValues throws exception with no argument ok 164 - setBioDataValues throws exception with too many argument ok 165 - setBioDataValues accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 172 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/DerivedSignal.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::DerivedSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Describable.t .................. 1..98 ok 1 - use Bio::MAGE::Describable; ok 2 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 25 - setSecurity returns value ok 26 - getSecurity fetches correct value ok 27 - setSecurity throws exception with bad argument ok 28 - getSecurity throws exception with argument ok 29 - setSecurity throws exception with no argument ok 30 - setSecurity throws exception with too many argument ok 31 - setSecurity accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - security->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - security->self() is a valid Bio::MAGE::Association::End ok 37 - auditTrail set in new() ok 38 - setAuditTrail returns correct value ok 39 - getAuditTrail fetches correct value ok 40 - addAuditTrail returns number of items in list ok 41 - addAuditTrail adds correct value ok 42 - setAuditTrail throws exception with non-array argument ok 43 - setAuditTrail throws exception with bad argument array ok 44 - addAuditTrail throws exception with no arguments ok 45 - addAuditTrail throws exception with bad array ok 46 - setAuditTrail accepts empty array ref ok 47 - getAuditTrail throws exception with argument ok 48 - setAuditTrail throws exception with no argument ok 49 - setAuditTrail throws exception with too many argument ok 50 - setAuditTrail accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok 77 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 78 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok 79 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 80 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok 81 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 82 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok 83 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 84 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok 85 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 86 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok 87 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 88 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok 89 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 90 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok 91 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 92 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok 93 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 94 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok 95 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok 97 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 98 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok t/Description.t .................. 1..158 ok 1 - use Bio::MAGE::Description::Description; ok 2 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - text new ok 12 - text getter/setter ok 13 - text getter throws exception with argument ok 14 - text setter throws exception with no argument ok 15 - text setter throws exception with too many argument ok 16 - text setter accepts undef ok 17 - databaseReferences set in new() ok 18 - setDatabaseReferences returns correct value ok 19 - getDatabaseReferences fetches correct value ok 20 - addDatabaseReferences returns number of items in list ok 21 - addDatabaseReferences adds correct value ok 22 - setDatabaseReferences throws exception with non-array argument ok 23 - setDatabaseReferences throws exception with bad argument array ok 24 - addDatabaseReferences throws exception with no arguments ok 25 - addDatabaseReferences throws exception with bad array ok 26 - setDatabaseReferences accepts empty array ref ok 27 - getDatabaseReferences throws exception with argument ok 28 - setDatabaseReferences throws exception with no argument ok 29 - setDatabaseReferences throws exception with too many argument ok 30 - setDatabaseReferences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - databaseReferences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - databaseReferences->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 37 - setExternalReference returns value ok 38 - getExternalReference fetches correct value ok 39 - setExternalReference throws exception with bad argument ok 40 - getExternalReference throws exception with argument ok 41 - setExternalReference throws exception with no argument ok 42 - setExternalReference throws exception with too many argument ok 43 - setExternalReference accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - externalReference->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - externalReference->self() is a valid Bio::MAGE::Association::End ok 49 - bibliographicReferences set in new() ok 50 - setBibliographicReferences returns correct value ok 51 - getBibliographicReferences fetches correct value ok 52 - addBibliographicReferences returns number of items in list ok 53 - addBibliographicReferences adds correct value ok 54 - setBibliographicReferences throws exception with non-array argument ok 55 - setBibliographicReferences throws exception with bad argument array ok 56 - addBibliographicReferences throws exception with no arguments ok 57 - addBibliographicReferences throws exception with bad array ok 58 - setBibliographicReferences accepts empty array ref ok 59 - getBibliographicReferences throws exception with argument ok 60 - setBibliographicReferences throws exception with no argument ok 61 - setBibliographicReferences throws exception with too many argument ok 62 - setBibliographicReferences accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bibliographicReferences->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bibliographicReferences->self() is a valid Bio::MAGE::Association::End ok 68 - descriptions set in new() ok 69 - setDescriptions returns correct value ok 70 - getDescriptions fetches correct value ok 71 - addDescriptions returns number of items in list ok 72 - addDescriptions adds correct value ok 73 - setDescriptions throws exception with non-array argument ok 74 - setDescriptions throws exception with bad argument array ok 75 - addDescriptions throws exception with no arguments ok 76 - addDescriptions throws exception with bad array ok 77 - setDescriptions accepts empty array ref ok 78 - getDescriptions throws exception with argument ok 79 - setDescriptions throws exception with no argument ok 80 - setDescriptions throws exception with too many argument ok 81 - setDescriptions accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - descriptions->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - annotations set in new() ok 139 - setAnnotations returns correct value ok 140 - getAnnotations fetches correct value ok 141 - addAnnotations returns number of items in list ok 142 - addAnnotations adds correct value ok 143 - setAnnotations throws exception with non-array argument ok 144 - setAnnotations throws exception with bad argument array ok 145 - addAnnotations throws exception with no arguments ok 146 - addAnnotations throws exception with bad array ok 147 - setAnnotations accepts empty array ref ok 148 - getAnnotations throws exception with argument ok 149 - setAnnotations throws exception with no argument ok 150 - setAnnotations throws exception with too many argument ok 151 - setAnnotations accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - annotations->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - annotations->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 158 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok t/Description_package.t .......... 1..16 ok 1 - use Bio::MAGE::Description; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 4 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 5 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 6 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 7 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 8 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 9 - tagname ok 10 - xml_lists ok 11 - A reference of type 'ARRAY' isa 'ARRAY' ok 12 - database_list empty ok 13 - A reference of type 'ARRAY' isa 'ARRAY' ok 14 - getDatabase_list empty ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - getDatabase_list not empty ok t/DesignElement.t ................ 1..107 ok 1 - use Bio::MAGE::DesignElement::DesignElement; ok 2 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 101 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 103 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok 104 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 105 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok t/DesignElement_package.t ........ 1..48 ok 1 - use Bio::MAGE::DesignElement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 4 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 5 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 6 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 7 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 8 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 9 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 10 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 11 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 12 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 13 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 14 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 15 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 16 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 17 - tagname ok 18 - xml_lists ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - compositesequence_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getCompositeSequence_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeSequence_list not empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - reporter_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getReporter_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getReporter_list not empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - compositecompositemap_list empty ok 33 - A reference of type 'ARRAY' isa 'ARRAY' ok 34 - getCompositeCompositeMap_list empty ok 35 - A reference of type 'ARRAY' isa 'ARRAY' ok 36 - getCompositeCompositeMap_list not empty ok 37 - A reference of type 'ARRAY' isa 'ARRAY' ok 38 - reportercompositemap_list empty ok 39 - A reference of type 'ARRAY' isa 'ARRAY' ok 40 - getReporterCompositeMap_list empty ok 41 - A reference of type 'ARRAY' isa 'ARRAY' ok 42 - getReporterCompositeMap_list not empty ok 43 - A reference of type 'ARRAY' isa 'ARRAY' ok 44 - featurereportermap_list empty ok 45 - A reference of type 'ARRAY' isa 'ARRAY' ok 46 - getFeatureReporterMap_list empty ok 47 - A reference of type 'ARRAY' isa 'ARRAY' ok 48 - getFeatureReporterMap_list not empty ok t/DesignElementDimension.t ....... 1..94 ok 1 - use Bio::MAGE::BioAssayData::DesignElementDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 88 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 89 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 90 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 91 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 92 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 93 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 94 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok t/DesignElementGroup.t ........... 1..126 ok 1 - use Bio::MAGE::ArrayDesign::DesignElementGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setSpecies returns value ok 89 - getSpecies fetches correct value ok 90 - setSpecies throws exception with bad argument ok 91 - getSpecies throws exception with argument ok 92 - setSpecies throws exception with no argument ok 93 - setSpecies throws exception with too many argument ok 94 - setSpecies accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - species->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - species->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 120 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 121 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 122 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 123 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 124 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok t/DesignElementMap.t ............. 1..113 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 107 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 108 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 109 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 110 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 111 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 112 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 113 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok t/DesignElementMapping.t ......... 1..44 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - designElementMaps set in new() ok 25 - setDesignElementMaps returns correct value ok 26 - getDesignElementMaps fetches correct value ok 27 - addDesignElementMaps returns number of items in list ok 28 - addDesignElementMaps adds correct value ok 29 - setDesignElementMaps throws exception with non-array argument ok 30 - setDesignElementMaps throws exception with bad argument array ok 31 - addDesignElementMaps throws exception with no arguments ok 32 - addDesignElementMaps throws exception with bad array ok 33 - setDesignElementMaps accepts empty array ref ok 34 - getDesignElementMaps throws exception with argument ok 35 - setDesignElementMaps throws exception with no argument ok 36 - setDesignElementMaps throws exception with too many argument ok 37 - setDesignElementMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok t/DistanceUnit.t ................. 1..46 ok 1 - use Bio::MAGE::Measurement::DistanceUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts fm ok 19 - unitNameCV accepts pm ok 20 - unitNameCV accepts nm ok 21 - unitNameCV accepts um ok 22 - unitNameCV accepts mm ok 23 - unitNameCV accepts cm ok 24 - unitNameCV accepts m ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Error.t ........................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::Error; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/ExpectedValue.t ................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::ExpectedValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/Experiment.t ................... 1..183 ok 1 - use Bio::MAGE::Experiment::Experiment; ok 2 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - experimentDesigns set in new() ok 18 - setExperimentDesigns returns correct value ok 19 - getExperimentDesigns fetches correct value ok 20 - addExperimentDesigns returns number of items in list ok 21 - addExperimentDesigns adds correct value ok 22 - setExperimentDesigns throws exception with non-array argument ok 23 - setExperimentDesigns throws exception with bad argument array ok 24 - addExperimentDesigns throws exception with no arguments ok 25 - addExperimentDesigns throws exception with bad array ok 26 - setExperimentDesigns accepts empty array ref ok 27 - getExperimentDesigns throws exception with argument ok 28 - setExperimentDesigns throws exception with no argument ok 29 - setExperimentDesigns throws exception with too many argument ok 30 - setExperimentDesigns accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - experimentDesigns->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - experimentDesigns->self() is a valid Bio::MAGE::Association::End ok 36 - providers set in new() ok 37 - setProviders returns correct value ok 38 - getProviders fetches correct value ok 39 - addProviders returns number of items in list ok 40 - addProviders adds correct value ok 41 - setProviders throws exception with non-array argument ok 42 - setProviders throws exception with bad argument array ok 43 - addProviders throws exception with no arguments ok 44 - addProviders throws exception with bad array ok 45 - setProviders accepts empty array ref ok 46 - getProviders throws exception with argument ok 47 - setProviders throws exception with no argument ok 48 - setProviders throws exception with too many argument ok 49 - setProviders accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - providers->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - providers->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - propertySets set in new() ok 75 - setPropertySets returns correct value ok 76 - getPropertySets fetches correct value ok 77 - addPropertySets returns number of items in list ok 78 - addPropertySets adds correct value ok 79 - setPropertySets throws exception with non-array argument ok 80 - setPropertySets throws exception with bad argument array ok 81 - addPropertySets throws exception with no arguments ok 82 - addPropertySets throws exception with bad array ok 83 - setPropertySets accepts empty array ref ok 84 - getPropertySets throws exception with argument ok 85 - setPropertySets throws exception with no argument ok 86 - setPropertySets throws exception with too many argument ok 87 - setPropertySets accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - propertySets->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - propertySets->self() is a valid Bio::MAGE::Association::End ok 93 - analysisResults set in new() ok 94 - setAnalysisResults returns correct value ok 95 - getAnalysisResults fetches correct value ok 96 - addAnalysisResults returns number of items in list ok 97 - addAnalysisResults adds correct value ok 98 - setAnalysisResults throws exception with non-array argument ok 99 - setAnalysisResults throws exception with bad argument array ok 100 - addAnalysisResults throws exception with no arguments ok 101 - addAnalysisResults throws exception with bad array ok 102 - setAnalysisResults accepts empty array ref ok 103 - getAnalysisResults throws exception with argument ok 104 - setAnalysisResults throws exception with no argument ok 105 - setAnalysisResults throws exception with too many argument ok 106 - setAnalysisResults accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - analysisResults->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - analysisResults->self() is a valid Bio::MAGE::Association::End ok 112 - bioAssays set in new() ok 113 - setBioAssays returns correct value ok 114 - getBioAssays fetches correct value ok 115 - addBioAssays returns number of items in list ok 116 - addBioAssays adds correct value ok 117 - setBioAssays throws exception with non-array argument ok 118 - setBioAssays throws exception with bad argument array ok 119 - addBioAssays throws exception with no arguments ok 120 - addBioAssays throws exception with bad array ok 121 - setBioAssays accepts empty array ref ok 122 - getBioAssays throws exception with argument ok 123 - setBioAssays throws exception with no argument ok 124 - setBioAssays throws exception with too many argument ok 125 - setBioAssays accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 131 - descriptions set in new() ok 132 - setDescriptions returns correct value ok 133 - getDescriptions fetches correct value ok 134 - addDescriptions returns number of items in list ok 135 - addDescriptions adds correct value ok 136 - setDescriptions throws exception with non-array argument ok 137 - setDescriptions throws exception with bad argument array ok 138 - addDescriptions throws exception with no arguments ok 139 - addDescriptions throws exception with bad array ok 140 - setDescriptions accepts empty array ref ok 141 - getDescriptions throws exception with argument ok 142 - setDescriptions throws exception with no argument ok 143 - setDescriptions throws exception with too many argument ok 144 - setDescriptions accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - descriptions->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - descriptions->self() is a valid Bio::MAGE::Association::End ok 150 - bioAssayData set in new() ok 151 - setBioAssayData returns correct value ok 152 - getBioAssayData fetches correct value ok 153 - addBioAssayData returns number of items in list ok 154 - addBioAssayData adds correct value ok 155 - setBioAssayData throws exception with non-array argument ok 156 - setBioAssayData throws exception with bad argument array ok 157 - addBioAssayData throws exception with no arguments ok 158 - addBioAssayData throws exception with bad array ok 159 - setBioAssayData accepts empty array ref ok 160 - getBioAssayData throws exception with argument ok 161 - setBioAssayData throws exception with no argument ok 162 - setBioAssayData throws exception with too many argument ok 163 - setBioAssayData accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - bioAssayData->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioAssayData->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 170 - setSecurity returns value ok 171 - getSecurity fetches correct value ok 172 - setSecurity throws exception with bad argument ok 173 - getSecurity throws exception with argument ok 174 - setSecurity throws exception with no argument ok 175 - setSecurity throws exception with too many argument ok 176 - setSecurity accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - security->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - security->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 183 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok t/Experiment_package.t ........... 1..15 ok 1 - use Bio::MAGE::Experiment; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 4 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 5 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 6 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 7 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - experiment_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getExperiment_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getExperiment_list not empty ok t/ExperimentalFactor.t ........... 1..139 ok 1 - use Bio::MAGE::Experiment::ExperimentalFactor; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 69 - setCategory returns value ok 70 - getCategory fetches correct value ok 71 - setCategory throws exception with bad argument ok 72 - getCategory throws exception with argument ok 73 - setCategory throws exception with no argument ok 74 - setCategory throws exception with too many argument ok 75 - setCategory accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - category->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - category->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - factorValues set in new() ok 101 - setFactorValues returns correct value ok 102 - getFactorValues fetches correct value ok 103 - addFactorValues returns number of items in list ok 104 - addFactorValues adds correct value ok 105 - setFactorValues throws exception with non-array argument ok 106 - setFactorValues throws exception with bad argument array ok 107 - addFactorValues throws exception with no arguments ok 108 - addFactorValues throws exception with bad array ok 109 - setFactorValues accepts empty array ref ok 110 - getFactorValues throws exception with argument ok 111 - setFactorValues throws exception with no argument ok 112 - setFactorValues throws exception with too many argument ok 113 - setFactorValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - factorValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - factorValues->self() is a valid Bio::MAGE::Association::End ok 119 - annotations set in new() ok 120 - setAnnotations returns correct value ok 121 - getAnnotations fetches correct value ok 122 - addAnnotations returns number of items in list ok 123 - addAnnotations adds correct value ok 124 - setAnnotations throws exception with non-array argument ok 125 - setAnnotations throws exception with bad argument array ok 126 - addAnnotations throws exception with no arguments ok 127 - addAnnotations throws exception with bad array ok 128 - setAnnotations accepts empty array ref ok 129 - getAnnotations throws exception with argument ok 130 - setAnnotations throws exception with no argument ok 131 - setAnnotations throws exception with too many argument ok 132 - setAnnotations accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - annotations->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - annotations->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok t/ExperimentDesign.t ............. 1..172 ok 1 - use Bio::MAGE::Experiment::ExperimentDesign; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 6 - setReplicateDescription returns value ok 7 - getReplicateDescription fetches correct value ok 8 - setReplicateDescription throws exception with bad argument ok 9 - getReplicateDescription throws exception with argument ok 10 - setReplicateDescription throws exception with no argument ok 11 - setReplicateDescription throws exception with too many argument ok 12 - setReplicateDescription accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - replicateDescription->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - replicateDescription->self() is a valid Bio::MAGE::Association::End ok 18 - experimentalFactors set in new() ok 19 - setExperimentalFactors returns correct value ok 20 - getExperimentalFactors fetches correct value ok 21 - addExperimentalFactors returns number of items in list ok 22 - addExperimentalFactors adds correct value ok 23 - setExperimentalFactors throws exception with non-array argument ok 24 - setExperimentalFactors throws exception with bad argument array ok 25 - addExperimentalFactors throws exception with no arguments ok 26 - addExperimentalFactors throws exception with bad array ok 27 - setExperimentalFactors accepts empty array ref ok 28 - getExperimentalFactors throws exception with argument ok 29 - setExperimentalFactors throws exception with no argument ok 30 - setExperimentalFactors throws exception with too many argument ok 31 - setExperimentalFactors accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - experimentalFactors->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - experimentalFactors->self() is a valid Bio::MAGE::Association::End ok 37 - types set in new() ok 38 - setTypes returns correct value ok 39 - getTypes fetches correct value ok 40 - addTypes returns number of items in list ok 41 - addTypes adds correct value ok 42 - setTypes throws exception with non-array argument ok 43 - setTypes throws exception with bad argument array ok 44 - addTypes throws exception with no arguments ok 45 - addTypes throws exception with bad array ok 46 - setTypes accepts empty array ref ok 47 - getTypes throws exception with argument ok 48 - setTypes throws exception with no argument ok 49 - setTypes throws exception with too many argument ok 50 - setTypes accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - types->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 57 - setQualityControlDescription returns value ok 58 - getQualityControlDescription fetches correct value ok 59 - setQualityControlDescription throws exception with bad argument ok 60 - getQualityControlDescription throws exception with argument ok 61 - setQualityControlDescription throws exception with no argument ok 62 - setQualityControlDescription throws exception with too many argument ok 63 - setQualityControlDescription accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - qualityControlDescription->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - qualityControlDescription->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 70 - setNormalizationDescription returns value ok 71 - getNormalizationDescription fetches correct value ok 72 - setNormalizationDescription throws exception with bad argument ok 73 - getNormalizationDescription throws exception with argument ok 74 - setNormalizationDescription throws exception with no argument ok 75 - setNormalizationDescription throws exception with too many argument ok 76 - setNormalizationDescription accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - normalizationDescription->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - normalizationDescription->self() is a valid Bio::MAGE::Association::End ok 82 - auditTrail set in new() ok 83 - setAuditTrail returns correct value ok 84 - getAuditTrail fetches correct value ok 85 - addAuditTrail returns number of items in list ok 86 - addAuditTrail adds correct value ok 87 - setAuditTrail throws exception with non-array argument ok 88 - setAuditTrail throws exception with bad argument array ok 89 - addAuditTrail throws exception with no arguments ok 90 - addAuditTrail throws exception with bad array ok 91 - setAuditTrail accepts empty array ref ok 92 - getAuditTrail throws exception with argument ok 93 - setAuditTrail throws exception with no argument ok 94 - setAuditTrail throws exception with too many argument ok 95 - setAuditTrail accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - topLevelBioAssays set in new() ok 121 - setTopLevelBioAssays returns correct value ok 122 - getTopLevelBioAssays fetches correct value ok 123 - addTopLevelBioAssays returns number of items in list ok 124 - addTopLevelBioAssays adds correct value ok 125 - setTopLevelBioAssays throws exception with non-array argument ok 126 - setTopLevelBioAssays throws exception with bad argument array ok 127 - addTopLevelBioAssays throws exception with no arguments ok 128 - addTopLevelBioAssays throws exception with bad array ok 129 - setTopLevelBioAssays accepts empty array ref ok 130 - getTopLevelBioAssays throws exception with argument ok 131 - setTopLevelBioAssays throws exception with no argument ok 132 - setTopLevelBioAssays throws exception with too many argument ok 133 - setTopLevelBioAssays accepts undef ok 134 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - topLevelBioAssays->other() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - topLevelBioAssays->self() is a valid Bio::MAGE::Association::End ok 139 - descriptions set in new() ok 140 - setDescriptions returns correct value ok 141 - getDescriptions fetches correct value ok 142 - addDescriptions returns number of items in list ok 143 - addDescriptions adds correct value ok 144 - setDescriptions throws exception with non-array argument ok 145 - setDescriptions throws exception with bad argument array ok 146 - addDescriptions throws exception with no arguments ok 147 - addDescriptions throws exception with bad array ok 148 - setDescriptions accepts empty array ref ok 149 - getDescriptions throws exception with argument ok 150 - setDescriptions throws exception with no argument ok 151 - setDescriptions throws exception with too many argument ok 152 - setDescriptions accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - descriptions->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - descriptions->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 159 - setSecurity returns value ok 160 - getSecurity fetches correct value ok 161 - setSecurity throws exception with bad argument ok 162 - getSecurity throws exception with argument ok 163 - setSecurity throws exception with no argument ok 164 - setSecurity throws exception with too many argument ok 165 - setSecurity accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - security->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - security->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 172 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok t/Extendable.t ................... 1..77 ok 1 - use Bio::MAGE::Extendable; ok 2 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 25 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok 26 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 27 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok 28 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok 30 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 31 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok 32 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 33 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok 34 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 35 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok 38 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 39 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok 40 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 41 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok 42 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 43 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok 46 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 47 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok 48 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 49 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 51 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok 52 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 53 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok 54 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 55 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok 56 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok 58 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 59 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok 60 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 61 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 65 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok 66 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 67 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok 68 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 69 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 71 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok 72 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 73 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 75 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 77 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/ExternalReference.t ............ 1..49 ok 1 - use Bio::MAGE::Description::ExternalReference; ok 2 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 3 - package ok 4 - class_name ok 5 - exportedFromDB new ok 6 - exportedFromDB getter/setter ok 7 - exportedFromDB getter throws exception with argument ok 8 - exportedFromDB setter throws exception with no argument ok 9 - exportedFromDB setter throws exception with too many argument ok 10 - exportedFromDB setter accepts undef ok 11 - exportName new ok 12 - exportName getter/setter ok 13 - exportName getter throws exception with argument ok 14 - exportName setter throws exception with no argument ok 15 - exportName setter throws exception with too many argument ok 16 - exportName setter accepts undef ok 17 - exportedFromServer new ok 18 - exportedFromServer getter/setter ok 19 - exportedFromServer getter throws exception with argument ok 20 - exportedFromServer setter throws exception with no argument ok 21 - exportedFromServer setter throws exception with too many argument ok 22 - exportedFromServer setter accepts undef ok 23 - exportID new ok 24 - exportID getter/setter ok 25 - exportID getter throws exception with argument ok 26 - exportID setter throws exception with no argument ok 27 - exportID setter throws exception with too many argument ok 28 - exportID setter accepts undef ok 29 - propertySets set in new() ok 30 - setPropertySets returns correct value ok 31 - getPropertySets fetches correct value ok 32 - addPropertySets returns number of items in list ok 33 - addPropertySets adds correct value ok 34 - setPropertySets throws exception with non-array argument ok 35 - setPropertySets throws exception with bad argument array ok 36 - addPropertySets throws exception with no arguments ok 37 - addPropertySets throws exception with bad array ok 38 - setPropertySets accepts empty array ref ok 39 - getPropertySets throws exception with argument ok 40 - setPropertySets throws exception with no argument ok 41 - setPropertySets throws exception with too many argument ok 42 - setPropertySets accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->self() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 49 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok t/FactorValue.t .................. 1..127 ok 1 - use Bio::MAGE::Experiment::FactorValue; ok 2 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 18 - setExperimentalFactor returns value ok 19 - getExperimentalFactor fetches correct value ok 20 - setExperimentalFactor throws exception with bad argument ok 21 - getExperimentalFactor throws exception with argument ok 22 - setExperimentalFactor throws exception with no argument ok 23 - setExperimentalFactor throws exception with too many argument ok 24 - setExperimentalFactor accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - experimentalFactor->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - experimentalFactor->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 31 - setMeasurement returns value ok 32 - getMeasurement fetches correct value ok 33 - setMeasurement throws exception with bad argument ok 34 - getMeasurement throws exception with argument ok 35 - setMeasurement throws exception with no argument ok 36 - setMeasurement throws exception with too many argument ok 37 - setMeasurement accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - measurement->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - measurement->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setValue returns value ok 45 - getValue fetches correct value ok 46 - setValue throws exception with bad argument ok 47 - getValue throws exception with argument ok 48 - setValue throws exception with no argument ok 49 - setValue throws exception with too many argument ok 50 - setValue accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - value->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - value->self() is a valid Bio::MAGE::Association::End ok 56 - descriptions set in new() ok 57 - setDescriptions returns correct value ok 58 - getDescriptions fetches correct value ok 59 - addDescriptions returns number of items in list ok 60 - addDescriptions adds correct value ok 61 - setDescriptions throws exception with non-array argument ok 62 - setDescriptions throws exception with bad argument array ok 63 - addDescriptions throws exception with no arguments ok 64 - addDescriptions throws exception with bad array ok 65 - setDescriptions accepts empty array ref ok 66 - getDescriptions throws exception with argument ok 67 - setDescriptions throws exception with no argument ok 68 - setDescriptions throws exception with too many argument ok 69 - setDescriptions accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - descriptions->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - descriptions->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 76 - setSecurity returns value ok 77 - getSecurity fetches correct value ok 78 - setSecurity throws exception with bad argument ok 79 - getSecurity throws exception with argument ok 80 - setSecurity throws exception with no argument ok 81 - setSecurity throws exception with too many argument ok 82 - setSecurity accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - security->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - security->self() is a valid Bio::MAGE::Association::End ok 88 - auditTrail set in new() ok 89 - setAuditTrail returns correct value ok 90 - getAuditTrail fetches correct value ok 91 - addAuditTrail returns number of items in list ok 92 - addAuditTrail adds correct value ok 93 - setAuditTrail throws exception with non-array argument ok 94 - setAuditTrail throws exception with bad argument array ok 95 - addAuditTrail throws exception with no arguments ok 96 - addAuditTrail throws exception with bad array ok 97 - setAuditTrail accepts empty array ref ok 98 - getAuditTrail throws exception with argument ok 99 - setAuditTrail throws exception with no argument ok 100 - setAuditTrail throws exception with too many argument ok 101 - setAuditTrail accepts undef ok 102 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 107 - propertySets set in new() ok 108 - setPropertySets returns correct value ok 109 - getPropertySets fetches correct value ok 110 - addPropertySets returns number of items in list ok 111 - addPropertySets adds correct value ok 112 - setPropertySets throws exception with non-array argument ok 113 - setPropertySets throws exception with bad argument array ok 114 - addPropertySets throws exception with no arguments ok 115 - addPropertySets throws exception with bad array ok 116 - setPropertySets accepts empty array ref ok 117 - getPropertySets throws exception with argument ok 118 - setPropertySets throws exception with no argument ok 119 - setPropertySets throws exception with too many argument ok 120 - setPropertySets accepts undef ok 121 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->other() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - propertySets->self() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok t/Failed.t ....................... 1..171 ok 1 - use Bio::MAGE::QuantitationType::Failed; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Feature.t ...................... 1..191 ok 1 - use Bio::MAGE::DesignElement::Feature; ok 2 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 31 - setZone returns value ok 32 - getZone fetches correct value ok 33 - setZone throws exception with bad argument ok 34 - getZone throws exception with argument ok 35 - setZone throws exception with no argument ok 36 - setZone throws exception with too many argument ok 37 - setZone accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - zone->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - zone->self() is a valid Bio::MAGE::Association::End ok 43 - controlledFeatures set in new() ok 44 - setControlledFeatures returns correct value ok 45 - getControlledFeatures fetches correct value ok 46 - addControlledFeatures returns number of items in list ok 47 - addControlledFeatures adds correct value ok 48 - setControlledFeatures throws exception with non-array argument ok 49 - setControlledFeatures throws exception with bad argument array ok 50 - addControlledFeatures throws exception with no arguments ok 51 - addControlledFeatures throws exception with bad array ok 52 - setControlledFeatures accepts empty array ref ok 53 - getControlledFeatures throws exception with argument ok 54 - setControlledFeatures throws exception with no argument ok 55 - setControlledFeatures throws exception with too many argument ok 56 - setControlledFeatures accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - controlledFeatures->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - controlledFeatures->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 63 - setPosition returns value ok 64 - getPosition fetches correct value ok 65 - setPosition throws exception with bad argument ok 66 - getPosition throws exception with argument ok 67 - setPosition throws exception with no argument ok 68 - setPosition throws exception with too many argument ok 69 - setPosition accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - position->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - position->self() is a valid Bio::MAGE::Association::End ok 75 - auditTrail set in new() ok 76 - setAuditTrail returns correct value ok 77 - getAuditTrail fetches correct value ok 78 - addAuditTrail returns number of items in list ok 79 - addAuditTrail adds correct value ok 80 - setAuditTrail throws exception with non-array argument ok 81 - setAuditTrail throws exception with bad argument array ok 82 - addAuditTrail throws exception with no arguments ok 83 - addAuditTrail throws exception with bad array ok 84 - setAuditTrail accepts empty array ref ok 85 - getAuditTrail throws exception with argument ok 86 - setAuditTrail throws exception with no argument ok 87 - setAuditTrail throws exception with too many argument ok 88 - setAuditTrail accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 94 - propertySets set in new() ok 95 - setPropertySets returns correct value ok 96 - getPropertySets fetches correct value ok 97 - addPropertySets returns number of items in list ok 98 - addPropertySets adds correct value ok 99 - setPropertySets throws exception with non-array argument ok 100 - setPropertySets throws exception with bad argument array ok 101 - addPropertySets throws exception with no arguments ok 102 - addPropertySets throws exception with bad array ok 103 - setPropertySets accepts empty array ref ok 104 - getPropertySets throws exception with argument ok 105 - setPropertySets throws exception with no argument ok 106 - setPropertySets throws exception with too many argument ok 107 - setPropertySets accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - propertySets->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - propertySets->self() is a valid Bio::MAGE::Association::End ok 113 - descriptions set in new() ok 114 - setDescriptions returns correct value ok 115 - getDescriptions fetches correct value ok 116 - addDescriptions returns number of items in list ok 117 - addDescriptions adds correct value ok 118 - setDescriptions throws exception with non-array argument ok 119 - setDescriptions throws exception with bad argument array ok 120 - addDescriptions throws exception with no arguments ok 121 - addDescriptions throws exception with bad array ok 122 - setDescriptions accepts empty array ref ok 123 - getDescriptions throws exception with argument ok 124 - setDescriptions throws exception with no argument ok 125 - setDescriptions throws exception with too many argument ok 126 - setDescriptions accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - descriptions->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 146 - setFeatureGroup returns value ok 147 - getFeatureGroup fetches correct value ok 148 - setFeatureGroup throws exception with bad argument ok 149 - getFeatureGroup throws exception with argument ok 150 - setFeatureGroup throws exception with no argument ok 151 - setFeatureGroup throws exception with too many argument ok 152 - setFeatureGroup accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - featureGroup->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - featureGroup->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 159 - setFeatureLocation returns value ok 160 - getFeatureLocation fetches correct value ok 161 - setFeatureLocation throws exception with bad argument ok 162 - getFeatureLocation throws exception with argument ok 163 - setFeatureLocation throws exception with no argument ok 164 - setFeatureLocation throws exception with too many argument ok 165 - setFeatureLocation accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - featureLocation->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - featureLocation->self() is a valid Bio::MAGE::Association::End ok 171 - controlFeatures set in new() ok 172 - setControlFeatures returns correct value ok 173 - getControlFeatures fetches correct value ok 174 - addControlFeatures returns number of items in list ok 175 - addControlFeatures adds correct value ok 176 - setControlFeatures throws exception with non-array argument ok 177 - setControlFeatures throws exception with bad argument array ok 178 - addControlFeatures throws exception with no arguments ok 179 - addControlFeatures throws exception with bad array ok 180 - setControlFeatures accepts empty array ref ok 181 - getControlFeatures throws exception with argument ok 182 - setControlFeatures throws exception with no argument ok 183 - setControlFeatures throws exception with too many argument ok 184 - setControlFeatures accepts undef ok 185 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 186 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 187 - controlFeatures->other() is a valid Bio::MAGE::Association::End ok 188 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 189 - controlFeatures->self() is a valid Bio::MAGE::Association::End ok 190 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 191 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/FeatureDefect.t ................ 1..64 ok 1 - use Bio::MAGE::Array::FeatureDefect; ok 2 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 19 - setFeature returns value ok 20 - getFeature fetches correct value ok 21 - setFeature throws exception with bad argument ok 22 - getFeature throws exception with argument ok 23 - setFeature throws exception with no argument ok 24 - setFeature throws exception with too many argument ok 25 - setFeature accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - feature->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - feature->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok t/FeatureDimension.t ............. 1..107 ok 1 - use Bio::MAGE::BioAssayData::FeatureDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - containedFeatures set in new() ok 88 - setContainedFeatures returns correct value ok 89 - getContainedFeatures fetches correct value ok 90 - addContainedFeatures returns number of items in list ok 91 - addContainedFeatures adds correct value ok 92 - setContainedFeatures throws exception with non-array argument ok 93 - setContainedFeatures throws exception with bad argument array ok 94 - addContainedFeatures throws exception with no arguments ok 95 - addContainedFeatures throws exception with bad array ok 96 - setContainedFeatures accepts empty array ref ok 97 - getContainedFeatures throws exception with argument ok 98 - setContainedFeatures throws exception with no argument ok 99 - setContainedFeatures throws exception with too many argument ok 100 - setContainedFeatures accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - containedFeatures->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - containedFeatures->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/FeatureExtraction.t ............ 1..133 ok 1 - use Bio::MAGE::BioAssay::FeatureExtraction; ok 2 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 18 - setPhysicalBioAssaySource returns value ok 19 - getPhysicalBioAssaySource fetches correct value ok 20 - setPhysicalBioAssaySource throws exception with bad argument ok 21 - getPhysicalBioAssaySource throws exception with argument ok 22 - setPhysicalBioAssaySource throws exception with no argument ok 23 - setPhysicalBioAssaySource throws exception with too many argument ok 24 - setPhysicalBioAssaySource accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - physicalBioAssaySource->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - physicalBioAssaySource->self() is a valid Bio::MAGE::Association::End ok 30 - protocolApplications set in new() ok 31 - setProtocolApplications returns correct value ok 32 - getProtocolApplications fetches correct value ok 33 - addProtocolApplications returns number of items in list ok 34 - addProtocolApplications adds correct value ok 35 - setProtocolApplications throws exception with non-array argument ok 36 - setProtocolApplications throws exception with bad argument array ok 37 - addProtocolApplications throws exception with no arguments ok 38 - addProtocolApplications throws exception with bad array ok 39 - setProtocolApplications accepts empty array ref ok 40 - getProtocolApplications throws exception with argument ok 41 - setProtocolApplications throws exception with no argument ok 42 - setProtocolApplications throws exception with too many argument ok 43 - setProtocolApplications accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 50 - setMeasuredBioAssayTarget returns value ok 51 - getMeasuredBioAssayTarget fetches correct value ok 52 - setMeasuredBioAssayTarget throws exception with bad argument ok 53 - getMeasuredBioAssayTarget throws exception with argument ok 54 - setMeasuredBioAssayTarget throws exception with no argument ok 55 - setMeasuredBioAssayTarget throws exception with too many argument ok 56 - setMeasuredBioAssayTarget accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - measuredBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - measuredBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 133 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/FeatureGroup.t ................. 1..196 ok 1 - use Bio::MAGE::ArrayDesign::FeatureGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 3 - package ok 4 - class_name ok 5 - featureLength new ok 6 - featureLength getter/setter ok 7 - featureLength getter throws exception with argument ok 8 - featureLength setter throws exception with no argument ok 9 - featureLength setter throws exception with too many argument ok 10 - featureLength setter accepts undef ok 11 - featureWidth new ok 12 - featureWidth getter/setter ok 13 - featureWidth getter throws exception with argument ok 14 - featureWidth setter throws exception with no argument ok 15 - featureWidth setter throws exception with too many argument ok 16 - featureWidth setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - featureHeight new ok 24 - featureHeight getter/setter ok 25 - featureHeight getter throws exception with argument ok 26 - featureHeight setter throws exception with no argument ok 27 - featureHeight setter throws exception with too many argument ok 28 - featureHeight setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - types set in new() ok 36 - setTypes returns correct value ok 37 - getTypes fetches correct value ok 38 - addTypes returns number of items in list ok 39 - addTypes adds correct value ok 40 - setTypes throws exception with non-array argument ok 41 - setTypes throws exception with bad argument array ok 42 - addTypes throws exception with no arguments ok 43 - addTypes throws exception with bad array ok 44 - setTypes accepts empty array ref ok 45 - getTypes throws exception with argument ok 46 - setTypes throws exception with no argument ok 47 - setTypes throws exception with too many argument ok 48 - setTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - types->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->self() is a valid Bio::MAGE::Association::End ok 54 - features set in new() ok 55 - setFeatures returns correct value ok 56 - getFeatures fetches correct value ok 57 - addFeatures returns number of items in list ok 58 - addFeatures adds correct value ok 59 - setFeatures throws exception with non-array argument ok 60 - setFeatures throws exception with bad argument array ok 61 - addFeatures throws exception with no arguments ok 62 - addFeatures throws exception with bad array ok 63 - setFeatures accepts empty array ref ok 64 - getFeatures throws exception with argument ok 65 - setFeatures throws exception with no argument ok 66 - setFeatures throws exception with too many argument ok 67 - setFeatures accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - features->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - features->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 74 - setFeatureShape returns value ok 75 - getFeatureShape fetches correct value ok 76 - setFeatureShape throws exception with bad argument ok 77 - getFeatureShape throws exception with argument ok 78 - setFeatureShape throws exception with no argument ok 79 - setFeatureShape throws exception with too many argument ok 80 - setFeatureShape accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureShape->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureShape->self() is a valid Bio::MAGE::Association::End ok 86 - auditTrail set in new() ok 87 - setAuditTrail returns correct value ok 88 - getAuditTrail fetches correct value ok 89 - addAuditTrail returns number of items in list ok 90 - addAuditTrail adds correct value ok 91 - setAuditTrail throws exception with non-array argument ok 92 - setAuditTrail throws exception with bad argument array ok 93 - addAuditTrail throws exception with no arguments ok 94 - addAuditTrail throws exception with bad array ok 95 - setAuditTrail accepts empty array ref ok 96 - getAuditTrail throws exception with argument ok 97 - setAuditTrail throws exception with no argument ok 98 - setAuditTrail throws exception with too many argument ok 99 - setAuditTrail accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 106 - setTechnologyType returns value ok 107 - getTechnologyType fetches correct value ok 108 - setTechnologyType throws exception with bad argument ok 109 - getTechnologyType throws exception with argument ok 110 - setTechnologyType throws exception with no argument ok 111 - setTechnologyType throws exception with too many argument ok 112 - setTechnologyType accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - technologyType->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - technologyType->self() is a valid Bio::MAGE::Association::End ok 118 - propertySets set in new() ok 119 - setPropertySets returns correct value ok 120 - getPropertySets fetches correct value ok 121 - addPropertySets returns number of items in list ok 122 - addPropertySets adds correct value ok 123 - setPropertySets throws exception with non-array argument ok 124 - setPropertySets throws exception with bad argument array ok 125 - addPropertySets throws exception with no arguments ok 126 - addPropertySets throws exception with bad array ok 127 - setPropertySets accepts empty array ref ok 128 - getPropertySets throws exception with argument ok 129 - setPropertySets throws exception with no argument ok 130 - setPropertySets throws exception with too many argument ok 131 - setPropertySets accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - propertySets->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - propertySets->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 138 - setSpecies returns value ok 139 - getSpecies fetches correct value ok 140 - setSpecies throws exception with bad argument ok 141 - getSpecies throws exception with argument ok 142 - setSpecies throws exception with no argument ok 143 - setSpecies throws exception with too many argument ok 144 - setSpecies accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - species->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - species->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 151 - setDistanceUnit returns value ok 152 - getDistanceUnit fetches correct value ok 153 - setDistanceUnit throws exception with bad argument ok 154 - getDistanceUnit throws exception with argument ok 155 - setDistanceUnit throws exception with no argument ok 156 - setDistanceUnit throws exception with too many argument ok 157 - setDistanceUnit accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 163 - descriptions set in new() ok 164 - setDescriptions returns correct value ok 165 - getDescriptions fetches correct value ok 166 - addDescriptions returns number of items in list ok 167 - addDescriptions adds correct value ok 168 - setDescriptions throws exception with non-array argument ok 169 - setDescriptions throws exception with bad argument array ok 170 - addDescriptions throws exception with no arguments ok 171 - addDescriptions throws exception with bad array ok 172 - setDescriptions accepts empty array ref ok 173 - getDescriptions throws exception with argument ok 174 - setDescriptions throws exception with no argument ok 175 - setDescriptions throws exception with too many argument ok 176 - setDescriptions accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - descriptions->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - descriptions->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 183 - setSecurity returns value ok 184 - getSecurity fetches correct value ok 185 - setSecurity throws exception with bad argument ok 186 - getSecurity throws exception with argument ok 187 - setSecurity throws exception with no argument ok 188 - setSecurity throws exception with too many argument ok 189 - setSecurity accepts undef ok 190 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 191 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 192 - security->other() is a valid Bio::MAGE::Association::End ok 193 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 194 - security->self() is a valid Bio::MAGE::Association::End ok 195 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 196 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/FeatureInformation.t ........... 1..57 ok 1 - use Bio::MAGE::DesignElement::FeatureInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 6 - setFeature returns value ok 7 - getFeature fetches correct value ok 8 - setFeature throws exception with bad argument ok 9 - getFeature throws exception with argument ok 10 - setFeature throws exception with no argument ok 11 - setFeature throws exception with too many argument ok 12 - setFeature accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - feature->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - feature->self() is a valid Bio::MAGE::Association::End ok 18 - propertySets set in new() ok 19 - setPropertySets returns correct value ok 20 - getPropertySets fetches correct value ok 21 - addPropertySets returns number of items in list ok 22 - addPropertySets adds correct value ok 23 - setPropertySets throws exception with non-array argument ok 24 - setPropertySets throws exception with bad argument array ok 25 - addPropertySets throws exception with no arguments ok 26 - addPropertySets throws exception with bad array ok 27 - setPropertySets accepts empty array ref ok 28 - getPropertySets throws exception with argument ok 29 - setPropertySets throws exception with no argument ok 30 - setPropertySets throws exception with too many argument ok 31 - setPropertySets accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - propertySets->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - propertySets->self() is a valid Bio::MAGE::Association::End ok 37 - mismatchInformation set in new() ok 38 - setMismatchInformation returns correct value ok 39 - getMismatchInformation fetches correct value ok 40 - addMismatchInformation returns number of items in list ok 41 - addMismatchInformation adds correct value ok 42 - setMismatchInformation throws exception with non-array argument ok 43 - setMismatchInformation throws exception with bad argument array ok 44 - addMismatchInformation throws exception with no arguments ok 45 - addMismatchInformation throws exception with bad array ok 46 - setMismatchInformation accepts empty array ref ok 47 - getMismatchInformation throws exception with argument ok 48 - setMismatchInformation throws exception with no argument ok 49 - setMismatchInformation throws exception with too many argument ok 50 - setMismatchInformation accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok t/FeatureLocation.t .............. 1..37 ok 1 - use Bio::MAGE::DesignElement::FeatureLocation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 3 - package ok 4 - class_name ok 5 - row new ok 6 - row getter/setter ok 7 - row getter throws exception with argument ok 8 - row setter throws exception with no argument ok 9 - row setter throws exception with too many argument ok 10 - row setter accepts undef ok 11 - column new ok 12 - column getter/setter ok 13 - column getter throws exception with argument ok 14 - column setter throws exception with no argument ok 15 - column setter throws exception with too many argument ok 16 - column setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 37 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok t/FeatureReporterMap.t ........... 1..139 ok 1 - use Bio::MAGE::DesignElement::FeatureReporterMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 107 - setReporter returns value ok 108 - getReporter fetches correct value ok 109 - setReporter throws exception with bad argument ok 110 - getReporter throws exception with argument ok 111 - setReporter throws exception with no argument ok 112 - setReporter throws exception with too many argument ok 113 - setReporter accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - reporter->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - reporter->self() is a valid Bio::MAGE::Association::End ok 119 - featureInformationSources set in new() ok 120 - setFeatureInformationSources returns correct value ok 121 - getFeatureInformationSources fetches correct value ok 122 - addFeatureInformationSources returns number of items in list ok 123 - addFeatureInformationSources adds correct value ok 124 - setFeatureInformationSources throws exception with non-array argument ok 125 - setFeatureInformationSources throws exception with bad argument array ok 126 - addFeatureInformationSources throws exception with no arguments ok 127 - addFeatureInformationSources throws exception with bad array ok 128 - setFeatureInformationSources accepts empty array ref ok 129 - getFeatureInformationSources throws exception with argument ok 130 - setFeatureInformationSources throws exception with no argument ok 131 - setFeatureInformationSources throws exception with too many argument ok 132 - setFeatureInformationSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - featureInformationSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - featureInformationSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/Fiducial.t ..................... 1..115 ok 1 - use Bio::MAGE::Array::Fiducial; ok 2 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 6 - setDistanceUnit returns value ok 7 - getDistanceUnit fetches correct value ok 8 - setDistanceUnit throws exception with bad argument ok 9 - getDistanceUnit throws exception with argument ok 10 - setDistanceUnit throws exception with no argument ok 11 - setDistanceUnit throws exception with too many argument ok 12 - setDistanceUnit accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 18 - descriptions set in new() ok 19 - setDescriptions returns correct value ok 20 - getDescriptions fetches correct value ok 21 - addDescriptions returns number of items in list ok 22 - addDescriptions adds correct value ok 23 - setDescriptions throws exception with non-array argument ok 24 - setDescriptions throws exception with bad argument array ok 25 - addDescriptions throws exception with no arguments ok 26 - addDescriptions throws exception with bad array ok 27 - setDescriptions accepts empty array ref ok 28 - getDescriptions throws exception with argument ok 29 - setDescriptions throws exception with no argument ok 30 - setDescriptions throws exception with too many argument ok 31 - setDescriptions accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - descriptions->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - descriptions->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 38 - setPosition returns value ok 39 - getPosition fetches correct value ok 40 - setPosition throws exception with bad argument ok 41 - getPosition throws exception with argument ok 42 - setPosition throws exception with no argument ok 43 - setPosition throws exception with too many argument ok 44 - setPosition accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - position->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - position->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 102 - setFiducialType returns value ok 103 - getFiducialType fetches correct value ok 104 - setFiducialType throws exception with bad argument ok 105 - getFiducialType throws exception with argument ok 106 - setFiducialType throws exception with no argument ok 107 - setFiducialType throws exception with too many argument ok 108 - setFiducialType accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - fiducialType->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - fiducialType->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok t/Hardware.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Hardware; ok 2 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 3 - package ok 4 - class_name ok 5 - make new ok 6 - make getter/setter ok 7 - make getter throws exception with argument ok 8 - make setter throws exception with no argument ok 9 - make setter throws exception with too many argument ok 10 - make setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - model new ok 24 - model getter/setter ok 25 - model getter throws exception with argument ok 26 - model setter throws exception with no argument ok 27 - model setter throws exception with too many argument ok 28 - model setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwareManufacturers set in new() ok 93 - setHardwareManufacturers returns correct value ok 94 - getHardwareManufacturers fetches correct value ok 95 - addHardwareManufacturers returns number of items in list ok 96 - addHardwareManufacturers adds correct value ok 97 - setHardwareManufacturers throws exception with non-array argument ok 98 - setHardwareManufacturers throws exception with bad argument array ok 99 - addHardwareManufacturers throws exception with no arguments ok 100 - addHardwareManufacturers throws exception with bad array ok 101 - setHardwareManufacturers accepts empty array ref ok 102 - getHardwareManufacturers throws exception with argument ok 103 - setHardwareManufacturers throws exception with no argument ok 104 - setHardwareManufacturers throws exception with too many argument ok 105 - setHardwareManufacturers accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/HardwareApplication.t .......... 1..114 ok 1 - use Bio::MAGE::Protocol::HardwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 3 - package ok 4 - class_name ok 5 - serialNumber new ok 6 - serialNumber getter/setter ok 7 - serialNumber getter throws exception with argument ok 8 - serialNumber setter throws exception with no argument ok 9 - serialNumber setter throws exception with too many argument ok 10 - serialNumber setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 12 - setHardware returns value ok 13 - getHardware fetches correct value ok 14 - setHardware throws exception with bad argument ok 15 - getHardware throws exception with argument ok 16 - setHardware throws exception with no argument ok 17 - setHardware throws exception with too many argument ok 18 - setHardware accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - hardware->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - hardware->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - auditTrail set in new() ok 57 - setAuditTrail returns correct value ok 58 - getAuditTrail fetches correct value ok 59 - addAuditTrail returns number of items in list ok 60 - addAuditTrail adds correct value ok 61 - setAuditTrail throws exception with non-array argument ok 62 - setAuditTrail throws exception with bad argument array ok 63 - addAuditTrail throws exception with no arguments ok 64 - addAuditTrail throws exception with bad array ok 65 - setAuditTrail accepts empty array ref ok 66 - getAuditTrail throws exception with argument ok 67 - setAuditTrail throws exception with no argument ok 68 - setAuditTrail throws exception with too many argument ok 69 - setAuditTrail accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 75 - propertySets set in new() ok 76 - setPropertySets returns correct value ok 77 - getPropertySets fetches correct value ok 78 - addPropertySets returns number of items in list ok 79 - addPropertySets adds correct value ok 80 - setPropertySets throws exception with non-array argument ok 81 - setPropertySets throws exception with bad argument array ok 82 - addPropertySets throws exception with no arguments ok 83 - addPropertySets throws exception with bad array ok 84 - setPropertySets accepts empty array ref ok 85 - getPropertySets throws exception with argument ok 86 - setPropertySets throws exception with no argument ok 87 - setPropertySets throws exception with too many argument ok 88 - setPropertySets accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - propertySets->self() is a valid Bio::MAGE::Association::End ok 94 - parameterValues set in new() ok 95 - setParameterValues returns correct value ok 96 - getParameterValues fetches correct value ok 97 - addParameterValues returns number of items in list ok 98 - addParameterValues adds correct value ok 99 - setParameterValues throws exception with non-array argument ok 100 - setParameterValues throws exception with bad argument array ok 101 - addParameterValues throws exception with no arguments ok 102 - addParameterValues throws exception with bad array ok 103 - setParameterValues accepts empty array ref ok 104 - getParameterValues throws exception with argument ok 105 - setParameterValues throws exception with no argument ok 106 - setParameterValues throws exception with too many argument ok 107 - setParameterValues accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 114 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/HigherLevelAnalysis_package.t .. 1..15 ok 1 - use Bio::MAGE::HigherLevelAnalysis; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 4 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 5 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 6 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 7 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - bioassaydatacluster_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioAssayDataCluster_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioAssayDataCluster_list not empty ok t/Hybridization.t ................ 1..152 ok 1 - use Bio::MAGE::BioAssay::Hybridization; ok 2 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok t/Identifiable.t ................. 1..146 ok 1 - use Bio::MAGE::Identifiable; ok 2 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 88 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok 89 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 90 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok 91 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 92 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok 93 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 94 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok 95 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 96 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok 97 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 98 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok 99 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok 101 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok 103 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 104 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 108 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok 109 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 110 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 112 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok 113 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 114 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok 115 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 116 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok 117 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 118 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 120 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok 121 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 122 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok 123 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 124 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok 125 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 126 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 128 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok 129 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 130 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok 131 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 132 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok 133 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 134 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok 135 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 136 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 138 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 140 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok 141 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 142 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok 143 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 144 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok t/Image.t ........................ 1..126 ok 1 - use Bio::MAGE::BioAssay::Image; ok 2 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - channels set in new() ok 24 - setChannels returns correct value ok 25 - getChannels fetches correct value ok 26 - addChannels returns number of items in list ok 27 - addChannels adds correct value ok 28 - setChannels throws exception with non-array argument ok 29 - setChannels throws exception with bad argument array ok 30 - addChannels throws exception with no arguments ok 31 - addChannels throws exception with bad array ok 32 - setChannels accepts empty array ref ok 33 - getChannels throws exception with argument ok 34 - setChannels throws exception with no argument ok 35 - setChannels throws exception with too many argument ok 36 - setChannels accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - channels->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - channels->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setFormat returns value ok 44 - getFormat fetches correct value ok 45 - setFormat throws exception with bad argument ok 46 - getFormat throws exception with argument ok 47 - setFormat throws exception with no argument ok 48 - setFormat throws exception with too many argument ok 49 - setFormat accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - format->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - format->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok t/ImageAcquisition.t ............. 1..152 ok 1 - use Bio::MAGE::BioAssay::ImageAcquisition; ok 2 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - images set in new() ok 18 - setImages returns correct value ok 19 - getImages fetches correct value ok 20 - addImages returns number of items in list ok 21 - addImages adds correct value ok 22 - setImages throws exception with non-array argument ok 23 - setImages throws exception with bad argument array ok 24 - addImages throws exception with no arguments ok 25 - addImages throws exception with bad array ok 26 - setImages accepts empty array ref ok 27 - getImages throws exception with argument ok 28 - setImages throws exception with no argument ok 29 - setImages throws exception with too many argument ok 30 - setImages accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - images->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - images->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 94 - setTarget returns value ok 95 - getTarget fetches correct value ok 96 - setTarget throws exception with bad argument ok 97 - getTarget throws exception with argument ok 98 - setTarget throws exception with no argument ok 99 - setTarget throws exception with too many argument ok 100 - setTarget accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - target->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - target->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 107 - setPhysicalBioAssay returns value ok 108 - getPhysicalBioAssay fetches correct value ok 109 - setPhysicalBioAssay throws exception with bad argument ok 110 - getPhysicalBioAssay throws exception with argument ok 111 - setPhysicalBioAssay throws exception with no argument ok 112 - setPhysicalBioAssay throws exception with too many argument ok 113 - setPhysicalBioAssay accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 119 - descriptions set in new() ok 120 - setDescriptions returns correct value ok 121 - getDescriptions fetches correct value ok 122 - addDescriptions returns number of items in list ok 123 - addDescriptions adds correct value ok 124 - setDescriptions throws exception with non-array argument ok 125 - setDescriptions throws exception with bad argument array ok 126 - addDescriptions throws exception with no arguments ok 127 - addDescriptions throws exception with bad array ok 128 - setDescriptions accepts empty array ref ok 129 - getDescriptions throws exception with argument ok 130 - setDescriptions throws exception with no argument ok 131 - setDescriptions throws exception with too many argument ok 132 - setDescriptions accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - descriptions->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - descriptions->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 139 - setSecurity returns value ok 140 - getSecurity fetches correct value ok 141 - setSecurity throws exception with bad argument ok 142 - getSecurity throws exception with argument ok 143 - setSecurity throws exception with no argument ok 144 - setSecurity throws exception with too many argument ok 145 - setSecurity accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - security->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - security->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 152 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok t/LabeledExtract.t ............... 1..177 ok 1 - use Bio::MAGE::BioMaterial::LabeledExtract; ok 2 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - labels set in new() ok 145 - setLabels returns correct value ok 146 - getLabels fetches correct value ok 147 - addLabels returns number of items in list ok 148 - addLabels adds correct value ok 149 - setLabels throws exception with non-array argument ok 150 - setLabels throws exception with bad argument array ok 151 - addLabels throws exception with no arguments ok 152 - addLabels throws exception with bad array ok 153 - setLabels accepts empty array ref ok 154 - getLabels throws exception with argument ok 155 - setLabels throws exception with no argument ok 156 - setLabels throws exception with too many argument ok 157 - setLabels accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - labels->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - labels->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/MAGE_package.t ................. 1..29 ok 1 - use Bio::MAGE; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 4 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 5 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 6 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 7 - An object of class 'Bio::MAGE' isa 'Bio::MAGE' ok 8 - tagname ok 9 - package count ok 10 ok 11 - identifiers ok 12 - objects ok 13 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 14 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 15 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 16 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 17 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 18 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 19 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 20 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 21 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 22 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 23 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 24 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 25 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 26 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 27 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 28 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 29 - package list count ok t/ManufactureLIMS.t .............. 1..123 ok 1 - use Bio::MAGE::Array::ManufactureLIMS; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 3 - package ok 4 - class_name ok 5 - quality new ok 6 - quality getter/setter ok 7 - quality getter throws exception with argument ok 8 - quality setter throws exception with no argument ok 9 - quality setter throws exception with too many argument ok 10 - quality setter accepts undef ok 11 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 12 - setFeature returns value ok 13 - getFeature fetches correct value ok 14 - setFeature throws exception with bad argument ok 15 - getFeature throws exception with argument ok 16 - setFeature throws exception with no argument ok 17 - setFeature throws exception with too many argument ok 18 - setFeature accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - feature->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - feature->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 25 - setIdentifierLIMS returns value ok 26 - getIdentifierLIMS fetches correct value ok 27 - setIdentifierLIMS throws exception with bad argument ok 28 - getIdentifierLIMS throws exception with argument ok 29 - setIdentifierLIMS throws exception with no argument ok 30 - setIdentifierLIMS throws exception with too many argument ok 31 - setIdentifierLIMS accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 38 - setBioMaterial returns value ok 39 - getBioMaterial fetches correct value ok 40 - setBioMaterial throws exception with bad argument ok 41 - getBioMaterial throws exception with argument ok 42 - setBioMaterial throws exception with no argument ok 43 - setBioMaterial throws exception with too many argument ok 44 - setBioMaterial accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 50 - descriptions set in new() ok 51 - setDescriptions returns correct value ok 52 - getDescriptions fetches correct value ok 53 - addDescriptions returns number of items in list ok 54 - addDescriptions adds correct value ok 55 - setDescriptions throws exception with non-array argument ok 56 - setDescriptions throws exception with bad argument array ok 57 - addDescriptions throws exception with no arguments ok 58 - addDescriptions throws exception with bad array ok 59 - setDescriptions accepts empty array ref ok 60 - getDescriptions throws exception with argument ok 61 - setDescriptions throws exception with no argument ok 62 - setDescriptions throws exception with too many argument ok 63 - setDescriptions accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - descriptions->self() is a valid Bio::MAGE::Association::End ok 69 - auditTrail set in new() ok 70 - setAuditTrail returns correct value ok 71 - getAuditTrail fetches correct value ok 72 - addAuditTrail returns number of items in list ok 73 - addAuditTrail adds correct value ok 74 - setAuditTrail throws exception with non-array argument ok 75 - setAuditTrail throws exception with bad argument array ok 76 - addAuditTrail throws exception with no arguments ok 77 - addAuditTrail throws exception with bad array ok 78 - setAuditTrail accepts empty array ref ok 79 - getAuditTrail throws exception with argument ok 80 - setAuditTrail throws exception with no argument ok 81 - setAuditTrail throws exception with too many argument ok 82 - setAuditTrail accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 89 - setSecurity returns value ok 90 - getSecurity fetches correct value ok 91 - setSecurity throws exception with bad argument ok 92 - getSecurity throws exception with argument ok 93 - setSecurity throws exception with no argument ok 94 - setSecurity throws exception with too many argument ok 95 - setSecurity accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - security->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - security->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 121 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 122 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 123 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok t/ManufactureLIMSBiomaterial.t ... 1..139 ok 1 - use Bio::MAGE::Array::ManufactureLIMSBiomaterial; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 3 - package ok 4 - class_name ok 5 - bioMaterialPlateCol new ok 6 - bioMaterialPlateCol getter/setter ok 7 - bioMaterialPlateCol getter throws exception with argument ok 8 - bioMaterialPlateCol setter throws exception with no argument ok 9 - bioMaterialPlateCol setter throws exception with too many argument ok 10 - bioMaterialPlateCol setter accepts undef ok 11 - bioMaterialPlateRow new ok 12 - bioMaterialPlateRow getter/setter ok 13 - bioMaterialPlateRow getter throws exception with argument ok 14 - bioMaterialPlateRow setter throws exception with no argument ok 15 - bioMaterialPlateRow setter throws exception with too many argument ok 16 - bioMaterialPlateRow setter accepts undef ok 17 - bioMaterialPlateIdentifier new ok 18 - bioMaterialPlateIdentifier getter/setter ok 19 - bioMaterialPlateIdentifier getter throws exception with argument ok 20 - bioMaterialPlateIdentifier setter throws exception with no argument ok 21 - bioMaterialPlateIdentifier setter throws exception with too many argument ok 22 - bioMaterialPlateIdentifier setter accepts undef ok 23 - quality new ok 24 - quality getter/setter ok 25 - quality getter throws exception with argument ok 26 - quality setter throws exception with no argument ok 27 - quality setter throws exception with too many argument ok 28 - quality setter accepts undef ok 29 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 30 - setFeature returns value ok 31 - getFeature fetches correct value ok 32 - setFeature throws exception with bad argument ok 33 - getFeature throws exception with argument ok 34 - setFeature throws exception with no argument ok 35 - setFeature throws exception with too many argument ok 36 - setFeature accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - feature->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - feature->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setIdentifierLIMS returns value ok 44 - getIdentifierLIMS fetches correct value ok 45 - setIdentifierLIMS throws exception with bad argument ok 46 - getIdentifierLIMS throws exception with argument ok 47 - setIdentifierLIMS throws exception with no argument ok 48 - setIdentifierLIMS throws exception with too many argument ok 49 - setIdentifierLIMS accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 75 - setBioMaterial returns value ok 76 - getBioMaterial fetches correct value ok 77 - setBioMaterial throws exception with bad argument ok 78 - getBioMaterial throws exception with argument ok 79 - setBioMaterial throws exception with no argument ok 80 - setBioMaterial throws exception with too many argument ok 81 - setBioMaterial accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 139 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok t/Map.t .......................... 1..113 ok 1 - use Bio::MAGE::BioEvent::Map; ok 2 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok 108 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 109 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok 110 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok 112 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 113 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/MassUnit.t ..................... 1..46 ok 1 - use Bio::MAGE::Measurement::MassUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts kg ok 19 - unitNameCV accepts g ok 20 - unitNameCV accepts mg ok 21 - unitNameCV accepts ug ok 22 - unitNameCV accepts ng ok 23 - unitNameCV accepts pg ok 24 - unitNameCV accepts fg ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/MeasuredBioAssay.t ............. 1..158 ok 1 - use Bio::MAGE::BioAssay::MeasuredBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 94 - setFeatureExtraction returns value ok 95 - getFeatureExtraction fetches correct value ok 96 - setFeatureExtraction throws exception with bad argument ok 97 - getFeatureExtraction throws exception with argument ok 98 - setFeatureExtraction throws exception with no argument ok 99 - setFeatureExtraction throws exception with too many argument ok 100 - setFeatureExtraction accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - featureExtraction->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - featureExtraction->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - measuredBioAssayData set in new() ok 139 - setMeasuredBioAssayData returns correct value ok 140 - getMeasuredBioAssayData fetches correct value ok 141 - addMeasuredBioAssayData returns number of items in list ok 142 - addMeasuredBioAssayData adds correct value ok 143 - setMeasuredBioAssayData throws exception with non-array argument ok 144 - setMeasuredBioAssayData throws exception with bad argument array ok 145 - addMeasuredBioAssayData throws exception with no arguments ok 146 - addMeasuredBioAssayData throws exception with bad array ok 147 - setMeasuredBioAssayData accepts empty array ref ok 148 - getMeasuredBioAssayData throws exception with argument ok 149 - setMeasuredBioAssayData throws exception with no argument ok 150 - setMeasuredBioAssayData throws exception with too many argument ok 151 - setMeasuredBioAssayData accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - measuredBioAssayData->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - measuredBioAssayData->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 158 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/MeasuredBioAssayData.t ......... 1..159 ok 1 - use Bio::MAGE::BioAssayData::MeasuredBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 120 - setQuantitationTypeDimension returns value ok 121 - getQuantitationTypeDimension fetches correct value ok 122 - setQuantitationTypeDimension throws exception with bad argument ok 123 - getQuantitationTypeDimension throws exception with argument ok 124 - setQuantitationTypeDimension throws exception with no argument ok 125 - setQuantitationTypeDimension throws exception with too many argument ok 126 - setQuantitationTypeDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 146 - setBioDataValues returns value ok 147 - getBioDataValues fetches correct value ok 148 - setBioDataValues throws exception with bad argument ok 149 - getBioDataValues throws exception with argument ok 150 - setBioDataValues throws exception with no argument ok 151 - setBioDataValues throws exception with too many argument ok 152 - setBioDataValues accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/MeasuredSignal.t ............... 1..171 ok 1 - use Bio::MAGE::QuantitationType::MeasuredSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Measurement.t .................. 1..74 ok 1 - use Bio::MAGE::Measurement::Measurement; ok 2 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - otherKind new ok 12 - otherKind getter/setter ok 13 - otherKind getter throws exception with argument ok 14 - otherKind setter throws exception with no argument ok 15 - otherKind setter throws exception with too many argument ok 16 - otherKind setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - type setter throws exception with bad argument ok 24 - type accepts absolute ok 25 - type accepts change ok 26 - kindCV new ok 27 - kindCV getter/setter ok 28 - kindCV getter throws exception with argument ok 29 - kindCV setter throws exception with no argument ok 30 - kindCV setter throws exception with too many argument ok 31 - kindCV setter accepts undef ok 32 - kindCV setter throws exception with bad argument ok 33 - kindCV accepts time ok 34 - kindCV accepts distance ok 35 - kindCV accepts temperature ok 36 - kindCV accepts quantity ok 37 - kindCV accepts mass ok 38 - kindCV accepts volume ok 39 - kindCV accepts concentration ok 40 - kindCV accepts other ok 41 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - setUnit returns value ok 43 - getUnit fetches correct value ok 44 - setUnit throws exception with bad argument ok 45 - getUnit throws exception with argument ok 46 - setUnit throws exception with no argument ok 47 - setUnit throws exception with too many argument ok 48 - setUnit accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - unit->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - unit->self() is a valid Bio::MAGE::Association::End ok 54 - propertySets set in new() ok 55 - setPropertySets returns correct value ok 56 - getPropertySets fetches correct value ok 57 - addPropertySets returns number of items in list ok 58 - addPropertySets adds correct value ok 59 - setPropertySets throws exception with non-array argument ok 60 - setPropertySets throws exception with bad argument array ok 61 - addPropertySets throws exception with no arguments ok 62 - addPropertySets throws exception with bad array ok 63 - setPropertySets accepts empty array ref ok 64 - getPropertySets throws exception with argument ok 65 - setPropertySets throws exception with no argument ok 66 - setPropertySets throws exception with too many argument ok 67 - setPropertySets accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - propertySets->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok t/Measurement_package.t .......... 1..14 ok 1 - use Bio::MAGE::Measurement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 4 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 5 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 6 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 7 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 8 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 9 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 10 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 11 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 12 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 13 - tagname ok 14 - xml_lists ok t/MismatchInformation.t .......... 1..43 ok 1 - use Bio::MAGE::DesignElement::MismatchInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 3 - package ok 4 - class_name ok 5 - replacedLength new ok 6 - replacedLength getter/setter ok 7 - replacedLength getter throws exception with argument ok 8 - replacedLength setter throws exception with no argument ok 9 - replacedLength setter throws exception with too many argument ok 10 - replacedLength setter accepts undef ok 11 - startCoord new ok 12 - startCoord getter/setter ok 13 - startCoord getter throws exception with argument ok 14 - startCoord setter throws exception with no argument ok 15 - startCoord setter throws exception with too many argument ok 16 - startCoord setter accepts undef ok 17 - newSequence new ok 18 - newSequence getter/setter ok 19 - newSequence getter throws exception with argument ok 20 - newSequence setter throws exception with no argument ok 21 - newSequence setter throws exception with too many argument ok 22 - newSequence setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 43 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok t/NameValueType.t ................ 1..41 ok 1 - use Bio::MAGE::NameValueType; ok 2 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok t/Node.t ......................... 1..133 ok 1 - use Bio::MAGE::HigherLevelAnalysis::Node; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 3 - package ok 4 - class_name ok 5 - nodeValue set in new() ok 6 - setNodeValue returns correct value ok 7 - getNodeValue fetches correct value ok 8 - addNodeValue returns number of items in list ok 9 - addNodeValue adds correct value ok 10 - setNodeValue throws exception with non-array argument ok 11 - setNodeValue throws exception with bad argument array ok 12 - addNodeValue throws exception with no arguments ok 13 - addNodeValue throws exception with bad array ok 14 - setNodeValue accepts empty array ref ok 15 - getNodeValue throws exception with argument ok 16 - setNodeValue throws exception with no argument ok 17 - setNodeValue throws exception with too many argument ok 18 - setNodeValue accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - nodeValue->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - nodeValue->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 63 - setSecurity returns value ok 64 - getSecurity fetches correct value ok 65 - setSecurity throws exception with bad argument ok 66 - getSecurity throws exception with argument ok 67 - setSecurity throws exception with no argument ok 68 - setSecurity throws exception with too many argument ok 69 - setSecurity accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - security->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - security->self() is a valid Bio::MAGE::Association::End ok 75 - nodes set in new() ok 76 - setNodes returns correct value ok 77 - getNodes fetches correct value ok 78 - addNodes returns number of items in list ok 79 - addNodes adds correct value ok 80 - setNodes throws exception with non-array argument ok 81 - setNodes throws exception with bad argument array ok 82 - addNodes throws exception with no arguments ok 83 - addNodes throws exception with bad array ok 84 - setNodes accepts empty array ref ok 85 - getNodes throws exception with argument ok 86 - setNodes throws exception with no argument ok 87 - setNodes throws exception with too many argument ok 88 - setNodes accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - nodes->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - nodes->self() is a valid Bio::MAGE::Association::End ok 94 - nodeContents set in new() ok 95 - setNodeContents returns correct value ok 96 - getNodeContents fetches correct value ok 97 - addNodeContents returns number of items in list ok 98 - addNodeContents adds correct value ok 99 - setNodeContents throws exception with non-array argument ok 100 - setNodeContents throws exception with bad argument array ok 101 - addNodeContents throws exception with no arguments ok 102 - addNodeContents throws exception with bad array ok 103 - setNodeContents accepts empty array ref ok 104 - getNodeContents throws exception with argument ok 105 - setNodeContents throws exception with no argument ok 106 - setNodeContents throws exception with too many argument ok 107 - setNodeContents accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - nodeContents->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - nodeContents->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 133 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok t/NodeContents.t ................. 1..115 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeContents; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 6 - setDesignElementDimension returns value ok 7 - getDesignElementDimension fetches correct value ok 8 - setDesignElementDimension throws exception with bad argument ok 9 - getDesignElementDimension throws exception with argument ok 10 - setDesignElementDimension throws exception with no argument ok 11 - setDesignElementDimension throws exception with too many argument ok 12 - setDesignElementDimension accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 19 - setBioAssayDimension returns value ok 20 - getBioAssayDimension fetches correct value ok 21 - setBioAssayDimension throws exception with bad argument ok 22 - getBioAssayDimension throws exception with argument ok 23 - setBioAssayDimension throws exception with no argument ok 24 - setBioAssayDimension throws exception with too many argument ok 25 - setBioAssayDimension accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 31 - descriptions set in new() ok 32 - setDescriptions returns correct value ok 33 - getDescriptions fetches correct value ok 34 - addDescriptions returns number of items in list ok 35 - addDescriptions adds correct value ok 36 - setDescriptions throws exception with non-array argument ok 37 - setDescriptions throws exception with bad argument array ok 38 - addDescriptions throws exception with no arguments ok 39 - addDescriptions throws exception with bad array ok 40 - setDescriptions accepts empty array ref ok 41 - getDescriptions throws exception with argument ok 42 - setDescriptions throws exception with no argument ok 43 - setDescriptions throws exception with too many argument ok 44 - setDescriptions accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - descriptions->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 102 - setQuantitationDimension returns value ok 103 - getQuantitationDimension fetches correct value ok 104 - setQuantitationDimension throws exception with bad argument ok 105 - getQuantitationDimension throws exception with argument ok 106 - setQuantitationDimension throws exception with no argument ok 107 - setQuantitationDimension throws exception with too many argument ok 108 - setQuantitationDimension accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - quantitationDimension->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - quantitationDimension->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok t/NodeValue.t .................... 1..76 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeValue; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setScale returns value ok 32 - getScale fetches correct value ok 33 - setScale throws exception with bad argument ok 34 - getScale throws exception with argument ok 35 - setScale throws exception with no argument ok 36 - setScale throws exception with too many argument ok 37 - setScale accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - scale->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - scale->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setType returns value ok 45 - getType fetches correct value ok 46 - setType throws exception with bad argument ok 47 - getType throws exception with argument ok 48 - setType throws exception with no argument ok 49 - setType throws exception with too many argument ok 50 - setType accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - type->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - type->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok t/OntologyEntry.t ................ 1..75 ok 1 - use Bio::MAGE::Description::OntologyEntry; ok 2 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - category new ok 12 - category getter/setter ok 13 - category getter throws exception with argument ok 14 - category setter throws exception with no argument ok 15 - category setter throws exception with too many argument ok 16 - category setter accepts undef ok 17 - description new ok 18 - description getter/setter ok 19 - description getter throws exception with argument ok 20 - description setter throws exception with no argument ok 21 - description setter throws exception with too many argument ok 22 - description setter accepts undef ok 23 - associations set in new() ok 24 - setAssociations returns correct value ok 25 - getAssociations fetches correct value ok 26 - addAssociations returns number of items in list ok 27 - addAssociations adds correct value ok 28 - setAssociations throws exception with non-array argument ok 29 - setAssociations throws exception with bad argument array ok 30 - addAssociations throws exception with no arguments ok 31 - addAssociations throws exception with bad array ok 32 - setAssociations accepts empty array ref ok 33 - getAssociations throws exception with argument ok 34 - setAssociations throws exception with no argument ok 35 - setAssociations throws exception with too many argument ok 36 - setAssociations accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - associations->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - associations->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setOntologyReference returns value ok 44 - getOntologyReference fetches correct value ok 45 - setOntologyReference throws exception with bad argument ok 46 - getOntologyReference throws exception with argument ok 47 - setOntologyReference throws exception with no argument ok 48 - setOntologyReference throws exception with too many argument ok 49 - setOntologyReference accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - ontologyReference->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - ontologyReference->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 75 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok t/Organization.t ................. 1..156 ok 1 - use Bio::MAGE::AuditAndSecurity::Organization; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - fax new ok 24 - fax getter/setter ok 25 - fax getter throws exception with argument ok 26 - fax setter throws exception with no argument ok 27 - fax setter throws exception with too many argument ok 28 - fax setter accepts undef ok 29 - tollFreePhone new ok 30 - tollFreePhone getter/setter ok 31 - tollFreePhone getter throws exception with argument ok 32 - tollFreePhone setter throws exception with no argument ok 33 - tollFreePhone setter throws exception with too many argument ok 34 - tollFreePhone setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 73 - setParent returns value ok 74 - getParent fetches correct value ok 75 - setParent throws exception with bad argument ok 76 - getParent throws exception with argument ok 77 - setParent throws exception with no argument ok 78 - setParent throws exception with too many argument ok 79 - setParent accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - parent->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - parent->self() is a valid Bio::MAGE::Association::End ok 85 - descriptions set in new() ok 86 - setDescriptions returns correct value ok 87 - getDescriptions fetches correct value ok 88 - addDescriptions returns number of items in list ok 89 - addDescriptions adds correct value ok 90 - setDescriptions throws exception with non-array argument ok 91 - setDescriptions throws exception with bad argument array ok 92 - addDescriptions throws exception with no arguments ok 93 - addDescriptions throws exception with bad array ok 94 - setDescriptions accepts empty array ref ok 95 - getDescriptions throws exception with argument ok 96 - setDescriptions throws exception with no argument ok 97 - setDescriptions throws exception with too many argument ok 98 - setDescriptions accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - descriptions->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 124 - setSecurity returns value ok 125 - getSecurity fetches correct value ok 126 - setSecurity throws exception with bad argument ok 127 - getSecurity throws exception with argument ok 128 - setSecurity throws exception with no argument ok 129 - setSecurity throws exception with too many argument ok 130 - setSecurity accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - security->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->self() is a valid Bio::MAGE::Association::End ok 136 - propertySets set in new() ok 137 - setPropertySets returns correct value ok 138 - getPropertySets fetches correct value ok 139 - addPropertySets returns number of items in list ok 140 - addPropertySets adds correct value ok 141 - setPropertySets throws exception with non-array argument ok 142 - setPropertySets throws exception with bad argument array ok 143 - addPropertySets throws exception with no arguments ok 144 - addPropertySets throws exception with bad array ok 145 - setPropertySets accepts empty array ref ok 146 - getPropertySets throws exception with argument ok 147 - setPropertySets throws exception with no argument ok 148 - setPropertySets throws exception with too many argument ok 149 - setPropertySets accepts undef ok 150 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 151 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 152 - propertySets->other() is a valid Bio::MAGE::Association::End ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - propertySets->self() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 156 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/Parameter.t .................... 1..114 ok 1 - use Bio::MAGE::Protocol::Parameter; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 101 - setDefaultValue returns value ok 102 - getDefaultValue fetches correct value ok 103 - setDefaultValue throws exception with bad argument ok 104 - getDefaultValue throws exception with argument ok 105 - setDefaultValue throws exception with no argument ok 106 - setDefaultValue throws exception with too many argument ok 107 - setDefaultValue accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - defaultValue->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - defaultValue->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 114 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok t/Parameterizable.t .............. 1..119 ok 1 - use Bio::MAGE::Protocol::Parameterizable; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - parameterTypes set in new() ok 24 - setParameterTypes returns correct value ok 25 - getParameterTypes fetches correct value ok 26 - addParameterTypes returns number of items in list ok 27 - addParameterTypes adds correct value ok 28 - setParameterTypes throws exception with non-array argument ok 29 - setParameterTypes throws exception with bad argument array ok 30 - addParameterTypes throws exception with no arguments ok 31 - addParameterTypes throws exception with bad array ok 32 - setParameterTypes accepts empty array ref ok 33 - getParameterTypes throws exception with argument ok 34 - setParameterTypes throws exception with no argument ok 35 - setParameterTypes throws exception with too many argument ok 36 - setParameterTypes accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 42 - descriptions set in new() ok 43 - setDescriptions returns correct value ok 44 - getDescriptions fetches correct value ok 45 - addDescriptions returns number of items in list ok 46 - addDescriptions adds correct value ok 47 - setDescriptions throws exception with non-array argument ok 48 - setDescriptions throws exception with bad argument array ok 49 - addDescriptions throws exception with no arguments ok 50 - addDescriptions throws exception with bad array ok 51 - setDescriptions accepts empty array ref ok 52 - getDescriptions throws exception with argument ok 53 - setDescriptions throws exception with no argument ok 54 - setDescriptions throws exception with too many argument ok 55 - setDescriptions accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - descriptions->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - descriptions->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 62 - setSecurity returns value ok 63 - getSecurity fetches correct value ok 64 - setSecurity throws exception with bad argument ok 65 - getSecurity throws exception with argument ok 66 - setSecurity throws exception with no argument ok 67 - setSecurity throws exception with too many argument ok 68 - setSecurity accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - security->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - security->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - propertySets set in new() ok 94 - setPropertySets returns correct value ok 95 - getPropertySets fetches correct value ok 96 - addPropertySets returns number of items in list ok 97 - addPropertySets adds correct value ok 98 - setPropertySets throws exception with non-array argument ok 99 - setPropertySets throws exception with bad argument array ok 100 - addPropertySets throws exception with no arguments ok 101 - addPropertySets throws exception with bad array ok 102 - setPropertySets accepts empty array ref ok 103 - getPropertySets throws exception with argument ok 104 - setPropertySets throws exception with no argument ok 105 - setPropertySets throws exception with too many argument ok 106 - setPropertySets accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - propertySets->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - propertySets->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 113 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok 114 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 115 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok 116 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 117 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok t/ParameterizableApplication.t ... 1..101 ok 1 - use Bio::MAGE::Protocol::ParameterizableApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - auditTrail set in new() ok 25 - setAuditTrail returns correct value ok 26 - getAuditTrail fetches correct value ok 27 - addAuditTrail returns number of items in list ok 28 - addAuditTrail adds correct value ok 29 - setAuditTrail throws exception with non-array argument ok 30 - setAuditTrail throws exception with bad argument array ok 31 - addAuditTrail throws exception with no arguments ok 32 - addAuditTrail throws exception with bad array ok 33 - setAuditTrail accepts empty array ref ok 34 - getAuditTrail throws exception with argument ok 35 - setAuditTrail throws exception with no argument ok 36 - setAuditTrail throws exception with too many argument ok 37 - setAuditTrail accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - parameterValues set in new() ok 76 - setParameterValues returns correct value ok 77 - getParameterValues fetches correct value ok 78 - addParameterValues returns number of items in list ok 79 - addParameterValues adds correct value ok 80 - setParameterValues throws exception with non-array argument ok 81 - setParameterValues throws exception with bad argument array ok 82 - addParameterValues throws exception with no arguments ok 83 - addParameterValues throws exception with bad array ok 84 - setParameterValues accepts empty array ref ok 85 - getParameterValues throws exception with argument ok 86 - setParameterValues throws exception with no argument ok 87 - setParameterValues throws exception with too many argument ok 88 - setParameterValues accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 94 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 95 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 97 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 98 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 99 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 100 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 101 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok t/ParameterValue.t ............... 1..44 ok 1 - use Bio::MAGE::Protocol::ParameterValue; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 12 - setParameterType returns value ok 13 - getParameterType fetches correct value ok 14 - setParameterType throws exception with bad argument ok 15 - getParameterType throws exception with argument ok 16 - setParameterType throws exception with no argument ok 17 - setParameterType throws exception with too many argument ok 18 - setParameterType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - parameterType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - parameterType->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok t/Person.t ....................... 1..174 ok 1 - use Bio::MAGE::AuditAndSecurity::Person; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 3 - package ok 4 - class_name ok 5 - firstName new ok 6 - firstName getter/setter ok 7 - firstName getter throws exception with argument ok 8 - firstName setter throws exception with no argument ok 9 - firstName setter throws exception with too many argument ok 10 - firstName setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - midInitials new ok 24 - midInitials getter/setter ok 25 - midInitials getter throws exception with argument ok 26 - midInitials setter throws exception with no argument ok 27 - midInitials setter throws exception with too many argument ok 28 - midInitials setter accepts undef ok 29 - phone new ok 30 - phone getter/setter ok 31 - phone getter throws exception with argument ok 32 - phone setter throws exception with no argument ok 33 - phone setter throws exception with too many argument ok 34 - phone setter accepts undef ok 35 - email new ok 36 - email getter/setter ok 37 - email getter throws exception with argument ok 38 - email setter throws exception with no argument ok 39 - email setter throws exception with too many argument ok 40 - email setter accepts undef ok 41 - identifier new ok 42 - identifier getter/setter ok 43 - identifier getter throws exception with argument ok 44 - identifier setter throws exception with no argument ok 45 - identifier setter throws exception with too many argument ok 46 - identifier setter accepts undef ok 47 - tollFreePhone new ok 48 - tollFreePhone getter/setter ok 49 - tollFreePhone getter throws exception with argument ok 50 - tollFreePhone setter throws exception with no argument ok 51 - tollFreePhone setter throws exception with too many argument ok 52 - tollFreePhone setter accepts undef ok 53 - fax new ok 54 - fax getter/setter ok 55 - fax getter throws exception with argument ok 56 - fax setter throws exception with no argument ok 57 - fax setter throws exception with too many argument ok 58 - fax setter accepts undef ok 59 - lastName new ok 60 - lastName getter/setter ok 61 - lastName getter throws exception with argument ok 62 - lastName setter throws exception with no argument ok 63 - lastName setter throws exception with too many argument ok 64 - lastName setter accepts undef ok 65 - address new ok 66 - address getter/setter ok 67 - address getter throws exception with argument ok 68 - address setter throws exception with no argument ok 69 - address setter throws exception with too many argument ok 70 - address setter accepts undef ok 71 - roles set in new() ok 72 - setRoles returns correct value ok 73 - getRoles fetches correct value ok 74 - addRoles returns number of items in list ok 75 - addRoles adds correct value ok 76 - setRoles throws exception with non-array argument ok 77 - setRoles throws exception with bad argument array ok 78 - addRoles throws exception with no arguments ok 79 - addRoles throws exception with bad array ok 80 - setRoles accepts empty array ref ok 81 - getRoles throws exception with argument ok 82 - setRoles throws exception with no argument ok 83 - setRoles throws exception with too many argument ok 84 - setRoles accepts undef ok 85 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - roles->other() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - roles->self() is a valid Bio::MAGE::Association::End ok 90 - descriptions set in new() ok 91 - setDescriptions returns correct value ok 92 - getDescriptions fetches correct value ok 93 - addDescriptions returns number of items in list ok 94 - addDescriptions adds correct value ok 95 - setDescriptions throws exception with non-array argument ok 96 - setDescriptions throws exception with bad argument array ok 97 - addDescriptions throws exception with no arguments ok 98 - addDescriptions throws exception with bad array ok 99 - setDescriptions accepts empty array ref ok 100 - getDescriptions throws exception with argument ok 101 - setDescriptions throws exception with no argument ok 102 - setDescriptions throws exception with too many argument ok 103 - setDescriptions accepts undef ok 104 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - descriptions->other() is a valid Bio::MAGE::Association::End ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - descriptions->self() is a valid Bio::MAGE::Association::End ok 109 - auditTrail set in new() ok 110 - setAuditTrail returns correct value ok 111 - getAuditTrail fetches correct value ok 112 - addAuditTrail returns number of items in list ok 113 - addAuditTrail adds correct value ok 114 - setAuditTrail throws exception with non-array argument ok 115 - setAuditTrail throws exception with bad argument array ok 116 - addAuditTrail throws exception with no arguments ok 117 - addAuditTrail throws exception with bad array ok 118 - setAuditTrail accepts empty array ref ok 119 - getAuditTrail throws exception with argument ok 120 - setAuditTrail throws exception with no argument ok 121 - setAuditTrail throws exception with too many argument ok 122 - setAuditTrail accepts undef ok 123 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 129 - setSecurity returns value ok 130 - getSecurity fetches correct value ok 131 - setSecurity throws exception with bad argument ok 132 - getSecurity throws exception with argument ok 133 - setSecurity throws exception with no argument ok 134 - setSecurity throws exception with too many argument ok 135 - setSecurity accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - security->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - security->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 142 - setAffiliation returns value ok 143 - getAffiliation fetches correct value ok 144 - setAffiliation throws exception with bad argument ok 145 - getAffiliation throws exception with argument ok 146 - setAffiliation throws exception with no argument ok 147 - setAffiliation throws exception with too many argument ok 148 - setAffiliation accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - affiliation->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - affiliation->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 174 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/PhysicalArrayDesign.t .......... 1..227 ok 1 - use Bio::MAGE::ArrayDesign::PhysicalArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - auditTrail set in new() ok 30 - setAuditTrail returns correct value ok 31 - getAuditTrail fetches correct value ok 32 - addAuditTrail returns number of items in list ok 33 - addAuditTrail adds correct value ok 34 - setAuditTrail throws exception with non-array argument ok 35 - setAuditTrail throws exception with bad argument array ok 36 - addAuditTrail throws exception with no arguments ok 37 - addAuditTrail throws exception with bad array ok 38 - setAuditTrail accepts empty array ref ok 39 - getAuditTrail throws exception with argument ok 40 - setAuditTrail throws exception with no argument ok 41 - setAuditTrail throws exception with too many argument ok 42 - setAuditTrail accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 48 - propertySets set in new() ok 49 - setPropertySets returns correct value ok 50 - getPropertySets fetches correct value ok 51 - addPropertySets returns number of items in list ok 52 - addPropertySets adds correct value ok 53 - setPropertySets throws exception with non-array argument ok 54 - setPropertySets throws exception with bad argument array ok 55 - addPropertySets throws exception with no arguments ok 56 - addPropertySets throws exception with bad array ok 57 - setPropertySets accepts empty array ref ok 58 - getPropertySets throws exception with argument ok 59 - setPropertySets throws exception with no argument ok 60 - setPropertySets throws exception with too many argument ok 61 - setPropertySets accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - propertySets->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - propertySets->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 68 - setSurfaceType returns value ok 69 - getSurfaceType fetches correct value ok 70 - setSurfaceType throws exception with bad argument ok 71 - getSurfaceType throws exception with argument ok 72 - setSurfaceType throws exception with no argument ok 73 - setSurfaceType throws exception with too many argument ok 74 - setSurfaceType accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - surfaceType->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - surfaceType->self() is a valid Bio::MAGE::Association::End ok 80 - designProviders set in new() ok 81 - setDesignProviders returns correct value ok 82 - getDesignProviders fetches correct value ok 83 - addDesignProviders returns number of items in list ok 84 - addDesignProviders adds correct value ok 85 - setDesignProviders throws exception with non-array argument ok 86 - setDesignProviders throws exception with bad argument array ok 87 - addDesignProviders throws exception with no arguments ok 88 - addDesignProviders throws exception with bad array ok 89 - setDesignProviders accepts empty array ref ok 90 - getDesignProviders throws exception with argument ok 91 - setDesignProviders throws exception with no argument ok 92 - setDesignProviders throws exception with too many argument ok 93 - setDesignProviders accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - designProviders->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - designProviders->self() is a valid Bio::MAGE::Association::End ok 99 - protocolApplications set in new() ok 100 - setProtocolApplications returns correct value ok 101 - getProtocolApplications fetches correct value ok 102 - addProtocolApplications returns number of items in list ok 103 - addProtocolApplications adds correct value ok 104 - setProtocolApplications throws exception with non-array argument ok 105 - setProtocolApplications throws exception with bad argument array ok 106 - addProtocolApplications throws exception with no arguments ok 107 - addProtocolApplications throws exception with bad array ok 108 - setProtocolApplications accepts empty array ref ok 109 - getProtocolApplications throws exception with argument ok 110 - setProtocolApplications throws exception with no argument ok 111 - setProtocolApplications throws exception with too many argument ok 112 - setProtocolApplications accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 118 - reporterGroups set in new() ok 119 - setReporterGroups returns correct value ok 120 - getReporterGroups fetches correct value ok 121 - addReporterGroups returns number of items in list ok 122 - addReporterGroups adds correct value ok 123 - setReporterGroups throws exception with non-array argument ok 124 - setReporterGroups throws exception with bad argument array ok 125 - addReporterGroups throws exception with no arguments ok 126 - addReporterGroups throws exception with bad array ok 127 - setReporterGroups accepts empty array ref ok 128 - getReporterGroups throws exception with argument ok 129 - setReporterGroups throws exception with no argument ok 130 - setReporterGroups throws exception with too many argument ok 131 - setReporterGroups accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 137 - zoneGroups set in new() ok 138 - setZoneGroups returns correct value ok 139 - getZoneGroups fetches correct value ok 140 - addZoneGroups returns number of items in list ok 141 - addZoneGroups adds correct value ok 142 - setZoneGroups throws exception with non-array argument ok 143 - setZoneGroups throws exception with bad argument array ok 144 - addZoneGroups throws exception with no arguments ok 145 - addZoneGroups throws exception with bad array ok 146 - setZoneGroups accepts empty array ref ok 147 - getZoneGroups throws exception with argument ok 148 - setZoneGroups throws exception with no argument ok 149 - setZoneGroups throws exception with too many argument ok 150 - setZoneGroups accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - zoneGroups->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - zoneGroups->self() is a valid Bio::MAGE::Association::End ok 156 - featureGroups set in new() ok 157 - setFeatureGroups returns correct value ok 158 - getFeatureGroups fetches correct value ok 159 - addFeatureGroups returns number of items in list ok 160 - addFeatureGroups adds correct value ok 161 - setFeatureGroups throws exception with non-array argument ok 162 - setFeatureGroups throws exception with bad argument array ok 163 - addFeatureGroups throws exception with no arguments ok 164 - addFeatureGroups throws exception with bad array ok 165 - setFeatureGroups accepts empty array ref ok 166 - getFeatureGroups throws exception with argument ok 167 - setFeatureGroups throws exception with no argument ok 168 - setFeatureGroups throws exception with too many argument ok 169 - setFeatureGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 175 - descriptions set in new() ok 176 - setDescriptions returns correct value ok 177 - getDescriptions fetches correct value ok 178 - addDescriptions returns number of items in list ok 179 - addDescriptions adds correct value ok 180 - setDescriptions throws exception with non-array argument ok 181 - setDescriptions throws exception with bad argument array ok 182 - addDescriptions throws exception with no arguments ok 183 - addDescriptions throws exception with bad array ok 184 - setDescriptions accepts empty array ref ok 185 - getDescriptions throws exception with argument ok 186 - setDescriptions throws exception with no argument ok 187 - setDescriptions throws exception with too many argument ok 188 - setDescriptions accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - descriptions->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - descriptions->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 195 - setSecurity returns value ok 196 - getSecurity fetches correct value ok 197 - setSecurity throws exception with bad argument ok 198 - getSecurity throws exception with argument ok 199 - setSecurity throws exception with no argument ok 200 - setSecurity throws exception with too many argument ok 201 - setSecurity accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - security->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - security->self() is a valid Bio::MAGE::Association::End ok 207 - compositeGroups set in new() ok 208 - setCompositeGroups returns correct value ok 209 - getCompositeGroups fetches correct value ok 210 - addCompositeGroups returns number of items in list ok 211 - addCompositeGroups adds correct value ok 212 - setCompositeGroups throws exception with non-array argument ok 213 - setCompositeGroups throws exception with bad argument array ok 214 - addCompositeGroups throws exception with no arguments ok 215 - addCompositeGroups throws exception with bad array ok 216 - setCompositeGroups accepts empty array ref ok 217 - getCompositeGroups throws exception with argument ok 218 - setCompositeGroups throws exception with no argument ok 219 - setCompositeGroups throws exception with too many argument ok 220 - setCompositeGroups accepts undef ok 221 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 222 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 223 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 224 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 225 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 226 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 227 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok t/PhysicalBioAssay.t ............. 1..177 ok 1 - use Bio::MAGE::BioAssay::PhysicalBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 37 - setBioAssayCreation returns value ok 38 - getBioAssayCreation fetches correct value ok 39 - setBioAssayCreation throws exception with bad argument ok 40 - getBioAssayCreation throws exception with argument ok 41 - setBioAssayCreation throws exception with no argument ok 42 - setBioAssayCreation throws exception with too many argument ok 43 - setBioAssayCreation accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - bioAssayCreation->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - bioAssayCreation->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - physicalBioAssayData set in new() ok 88 - setPhysicalBioAssayData returns correct value ok 89 - getPhysicalBioAssayData fetches correct value ok 90 - addPhysicalBioAssayData returns number of items in list ok 91 - addPhysicalBioAssayData adds correct value ok 92 - setPhysicalBioAssayData throws exception with non-array argument ok 93 - setPhysicalBioAssayData throws exception with bad argument array ok 94 - addPhysicalBioAssayData throws exception with no arguments ok 95 - addPhysicalBioAssayData throws exception with bad array ok 96 - setPhysicalBioAssayData accepts empty array ref ok 97 - getPhysicalBioAssayData throws exception with argument ok 98 - setPhysicalBioAssayData throws exception with no argument ok 99 - setPhysicalBioAssayData throws exception with too many argument ok 100 - setPhysicalBioAssayData accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - physicalBioAssayData->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - physicalBioAssayData->self() is a valid Bio::MAGE::Association::End ok 106 - bioAssayFactorValues set in new() ok 107 - setBioAssayFactorValues returns correct value ok 108 - getBioAssayFactorValues fetches correct value ok 109 - addBioAssayFactorValues returns number of items in list ok 110 - addBioAssayFactorValues adds correct value ok 111 - setBioAssayFactorValues throws exception with non-array argument ok 112 - setBioAssayFactorValues throws exception with bad argument array ok 113 - addBioAssayFactorValues throws exception with no arguments ok 114 - addBioAssayFactorValues throws exception with bad array ok 115 - setBioAssayFactorValues accepts empty array ref ok 116 - getBioAssayFactorValues throws exception with argument ok 117 - setBioAssayFactorValues throws exception with no argument ok 118 - setBioAssayFactorValues throws exception with too many argument ok 119 - setBioAssayFactorValues accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 125 - bioAssayTreatments set in new() ok 126 - setBioAssayTreatments returns correct value ok 127 - getBioAssayTreatments fetches correct value ok 128 - addBioAssayTreatments returns number of items in list ok 129 - addBioAssayTreatments adds correct value ok 130 - setBioAssayTreatments throws exception with non-array argument ok 131 - setBioAssayTreatments throws exception with bad argument array ok 132 - addBioAssayTreatments throws exception with no arguments ok 133 - addBioAssayTreatments throws exception with bad array ok 134 - setBioAssayTreatments accepts empty array ref ok 135 - getBioAssayTreatments throws exception with argument ok 136 - setBioAssayTreatments throws exception with no argument ok 137 - setBioAssayTreatments throws exception with too many argument ok 138 - setBioAssayTreatments accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - bioAssayTreatments->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - bioAssayTreatments->self() is a valid Bio::MAGE::Association::End ok 144 - descriptions set in new() ok 145 - setDescriptions returns correct value ok 146 - getDescriptions fetches correct value ok 147 - addDescriptions returns number of items in list ok 148 - addDescriptions adds correct value ok 149 - setDescriptions throws exception with non-array argument ok 150 - setDescriptions throws exception with bad argument array ok 151 - addDescriptions throws exception with no arguments ok 152 - addDescriptions throws exception with bad array ok 153 - setDescriptions accepts empty array ref ok 154 - getDescriptions throws exception with argument ok 155 - setDescriptions throws exception with no argument ok 156 - setDescriptions throws exception with too many argument ok 157 - setDescriptions accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - descriptions->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - descriptions->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 164 - setSecurity returns value ok 165 - getSecurity fetches correct value ok 166 - setSecurity throws exception with bad argument ok 167 - getSecurity throws exception with argument ok 168 - setSecurity throws exception with no argument ok 169 - setSecurity throws exception with too many argument ok 170 - setSecurity accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - security->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - security->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/Position.t ..................... 1..50 ok 1 - use Bio::MAGE::DesignElement::Position; ok 2 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 3 - package ok 4 - class_name ok 5 - y new ok 6 - y getter/setter ok 7 - y getter throws exception with argument ok 8 - y setter throws exception with no argument ok 9 - y setter throws exception with too many argument ok 10 - y setter accepts undef ok 11 - x new ok 12 - x getter/setter ok 13 - x getter throws exception with argument ok 14 - x setter throws exception with no argument ok 15 - x setter throws exception with too many argument ok 16 - x setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok t/PositionDelta.t ................ 1..50 ok 1 - use Bio::MAGE::Array::PositionDelta; ok 2 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 3 - package ok 4 - class_name ok 5 - deltaX new ok 6 - deltaX getter/setter ok 7 - deltaX getter throws exception with argument ok 8 - deltaX setter throws exception with no argument ok 9 - deltaX setter throws exception with too many argument ok 10 - deltaX setter accepts undef ok 11 - deltaY new ok 12 - deltaY getter/setter ok 13 - deltaY getter throws exception with argument ok 14 - deltaY setter throws exception with no argument ok 15 - deltaY setter throws exception with too many argument ok 16 - deltaY setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok t/PresentAbsent.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::PresentAbsent; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Protocol.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Protocol; ok 2 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - text new ok 18 - text getter/setter ok 19 - text getter throws exception with argument ok 20 - text setter throws exception with no argument ok 21 - text setter throws exception with too many argument ok 22 - text setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - title new ok 30 - title getter/setter ok 31 - title getter throws exception with argument ok 32 - title setter throws exception with no argument ok 33 - title setter throws exception with too many argument ok 34 - title setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwares set in new() ok 93 - setHardwares returns correct value ok 94 - getHardwares fetches correct value ok 95 - addHardwares returns number of items in list ok 96 - addHardwares adds correct value ok 97 - setHardwares throws exception with non-array argument ok 98 - setHardwares throws exception with bad argument array ok 99 - addHardwares throws exception with no arguments ok 100 - addHardwares throws exception with bad array ok 101 - setHardwares accepts empty array ref ok 102 - getHardwares throws exception with argument ok 103 - setHardwares throws exception with no argument ok 104 - setHardwares throws exception with too many argument ok 105 - setHardwares accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwares->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwares->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/Protocol_package.t ............. 1..33 ok 1 - use Bio::MAGE::Protocol; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 4 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 5 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 6 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 7 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 8 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 9 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 10 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 11 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 12 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 13 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - hardware_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getHardware_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getHardware_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - software_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getSoftware_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSoftware_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - protocol_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getProtocol_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getProtocol_list not empty ok t/ProtocolApplication.t .......... 1..171 ok 1 - use Bio::MAGE::Protocol::ProtocolApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 3 - package ok 4 - class_name ok 5 - activityDate new ok 6 - activityDate getter/setter ok 7 - activityDate getter throws exception with argument ok 8 - activityDate setter throws exception with no argument ok 9 - activityDate setter throws exception with too many argument ok 10 - activityDate setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 12 - setProtocol returns value ok 13 - getProtocol fetches correct value ok 14 - setProtocol throws exception with bad argument ok 15 - getProtocol throws exception with argument ok 16 - setProtocol throws exception with no argument ok 17 - setProtocol throws exception with too many argument ok 18 - setProtocol accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - protocol->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - protocol->self() is a valid Bio::MAGE::Association::End ok 24 - hardwareApplications set in new() ok 25 - setHardwareApplications returns correct value ok 26 - getHardwareApplications fetches correct value ok 27 - addHardwareApplications returns number of items in list ok 28 - addHardwareApplications adds correct value ok 29 - setHardwareApplications throws exception with non-array argument ok 30 - setHardwareApplications throws exception with bad argument array ok 31 - addHardwareApplications throws exception with no arguments ok 32 - addHardwareApplications throws exception with bad array ok 33 - setHardwareApplications accepts empty array ref ok 34 - getHardwareApplications throws exception with argument ok 35 - setHardwareApplications throws exception with no argument ok 36 - setHardwareApplications throws exception with too many argument ok 37 - setHardwareApplications accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - hardwareApplications->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - hardwareApplications->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - softwareApplications set in new() ok 82 - setSoftwareApplications returns correct value ok 83 - getSoftwareApplications fetches correct value ok 84 - addSoftwareApplications returns number of items in list ok 85 - addSoftwareApplications adds correct value ok 86 - setSoftwareApplications throws exception with non-array argument ok 87 - setSoftwareApplications throws exception with bad argument array ok 88 - addSoftwareApplications throws exception with no arguments ok 89 - addSoftwareApplications throws exception with bad array ok 90 - setSoftwareApplications accepts empty array ref ok 91 - getSoftwareApplications throws exception with argument ok 92 - setSoftwareApplications throws exception with no argument ok 93 - setSoftwareApplications throws exception with too many argument ok 94 - setSoftwareApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - softwareApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - softwareApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - performers set in new() ok 133 - setPerformers returns correct value ok 134 - getPerformers fetches correct value ok 135 - addPerformers returns number of items in list ok 136 - addPerformers adds correct value ok 137 - setPerformers throws exception with non-array argument ok 138 - setPerformers throws exception with bad argument array ok 139 - addPerformers throws exception with no arguments ok 140 - addPerformers throws exception with bad array ok 141 - setPerformers accepts empty array ref ok 142 - getPerformers throws exception with argument ok 143 - setPerformers throws exception with no argument ok 144 - setPerformers throws exception with too many argument ok 145 - setPerformers accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - performers->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - performers->self() is a valid Bio::MAGE::Association::End ok 151 - parameterValues set in new() ok 152 - setParameterValues returns correct value ok 153 - getParameterValues fetches correct value ok 154 - addParameterValues returns number of items in list ok 155 - addParameterValues adds correct value ok 156 - setParameterValues throws exception with non-array argument ok 157 - setParameterValues throws exception with bad argument array ok 158 - addParameterValues throws exception with no arguments ok 159 - addParameterValues throws exception with bad array ok 160 - setParameterValues accepts empty array ref ok 161 - getParameterValues throws exception with argument ok 162 - setParameterValues throws exception with no argument ok 163 - setParameterValues throws exception with too many argument ok 164 - setParameterValues accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 171 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/PValue.t ....................... 1..184 ok 1 - use Bio::MAGE::QuantitationType::PValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/QuantitationType.t ............. 1..175 ok 1 - use Bio::MAGE::QuantitationType::QuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 173 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 174 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 175 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok t/QuantitationType_package.t ..... 1..23 ok 1 - use Bio::MAGE::QuantitationType; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 4 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 5 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 6 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 7 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 8 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 9 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 10 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 11 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 12 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 13 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 14 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 15 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 16 - tagname ok 17 - xml_lists ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - quantitationtype_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getQuantitationType_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getQuantitationType_list not empty ok t/QuantitationTypeDimension.t .... 1..107 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - quantitationTypes set in new() ok 18 - setQuantitationTypes returns correct value ok 19 - getQuantitationTypes fetches correct value ok 20 - addQuantitationTypes returns number of items in list ok 21 - addQuantitationTypes adds correct value ok 22 - setQuantitationTypes throws exception with non-array argument ok 23 - setQuantitationTypes throws exception with bad argument array ok 24 - addQuantitationTypes throws exception with no arguments ok 25 - addQuantitationTypes throws exception with bad array ok 26 - setQuantitationTypes accepts empty array ref ok 27 - getQuantitationTypes throws exception with argument ok 28 - setQuantitationTypes throws exception with no argument ok 29 - setQuantitationTypes throws exception with too many argument ok 30 - setQuantitationTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - quantitationTypes->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - quantitationTypes->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok t/QuantitationTypeMap.t .......... 1..139 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - sourcesQuantitationType set in new() ok 37 - setSourcesQuantitationType returns correct value ok 38 - getSourcesQuantitationType fetches correct value ok 39 - addSourcesQuantitationType returns number of items in list ok 40 - addSourcesQuantitationType adds correct value ok 41 - setSourcesQuantitationType throws exception with non-array argument ok 42 - setSourcesQuantitationType throws exception with bad argument array ok 43 - addSourcesQuantitationType throws exception with no arguments ok 44 - addSourcesQuantitationType throws exception with bad array ok 45 - setSourcesQuantitationType accepts empty array ref ok 46 - getSourcesQuantitationType throws exception with argument ok 47 - setSourcesQuantitationType throws exception with no argument ok 48 - setSourcesQuantitationType throws exception with too many argument ok 49 - setSourcesQuantitationType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - sourcesQuantitationType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - sourcesQuantitationType->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 107 - setTargetQuantitationType returns value ok 108 - getTargetQuantitationType fetches correct value ok 109 - setTargetQuantitationType throws exception with bad argument ok 110 - getTargetQuantitationType throws exception with argument ok 111 - setTargetQuantitationType throws exception with no argument ok 112 - setTargetQuantitationType throws exception with too many argument ok 113 - setTargetQuantitationType accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok t/QuantitationTypeMapping.t ...... 1..44 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - quantitationTypeMaps set in new() ok 25 - setQuantitationTypeMaps returns correct value ok 26 - getQuantitationTypeMaps fetches correct value ok 27 - addQuantitationTypeMaps returns number of items in list ok 28 - addQuantitationTypeMaps adds correct value ok 29 - setQuantitationTypeMaps throws exception with non-array argument ok 30 - setQuantitationTypeMaps throws exception with bad argument array ok 31 - addQuantitationTypeMaps throws exception with no arguments ok 32 - addQuantitationTypeMaps throws exception with bad array ok 33 - setQuantitationTypeMaps accepts empty array ref ok 34 - getQuantitationTypeMaps throws exception with argument ok 35 - setQuantitationTypeMaps throws exception with no argument ok 36 - setQuantitationTypeMaps throws exception with too many argument ok 37 - setQuantitationTypeMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok t/QuantityUnit.t ................. 1..47 ok 1 - use Bio::MAGE::Measurement::QuantityUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mol ok 19 - unitNameCV accepts amol ok 20 - unitNameCV accepts fmol ok 21 - unitNameCV accepts pmol ok 22 - unitNameCV accepts nmol ok 23 - unitNameCV accepts umol ok 24 - unitNameCV accepts mmol ok 25 - unitNameCV accepts molecules ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Ratio.t ........................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::Ratio; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Reporter.t ..................... 1..171 ok 1 - use Bio::MAGE::DesignElement::Reporter; ok 2 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setWarningType returns value ok 19 - getWarningType fetches correct value ok 20 - setWarningType throws exception with bad argument ok 21 - getWarningType throws exception with argument ok 22 - setWarningType throws exception with no argument ok 23 - setWarningType throws exception with too many argument ok 24 - setWarningType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - warningType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - warningType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setControlType returns value ok 32 - getControlType fetches correct value ok 33 - setControlType throws exception with bad argument ok 34 - getControlType throws exception with argument ok 35 - setControlType throws exception with no argument ok 36 - setControlType throws exception with too many argument ok 37 - setControlType accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - controlType->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - controlType->self() is a valid Bio::MAGE::Association::End ok 43 - failTypes set in new() ok 44 - setFailTypes returns correct value ok 45 - getFailTypes fetches correct value ok 46 - addFailTypes returns number of items in list ok 47 - addFailTypes adds correct value ok 48 - setFailTypes throws exception with non-array argument ok 49 - setFailTypes throws exception with bad argument array ok 50 - addFailTypes throws exception with no arguments ok 51 - addFailTypes throws exception with bad array ok 52 - setFailTypes accepts empty array ref ok 53 - getFailTypes throws exception with argument ok 54 - setFailTypes throws exception with no argument ok 55 - setFailTypes throws exception with too many argument ok 56 - setFailTypes accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - failTypes->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - failTypes->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - immobilizedCharacteristics set in new() ok 133 - setImmobilizedCharacteristics returns correct value ok 134 - getImmobilizedCharacteristics fetches correct value ok 135 - addImmobilizedCharacteristics returns number of items in list ok 136 - addImmobilizedCharacteristics adds correct value ok 137 - setImmobilizedCharacteristics throws exception with non-array argument ok 138 - setImmobilizedCharacteristics throws exception with bad argument array ok 139 - addImmobilizedCharacteristics throws exception with no arguments ok 140 - addImmobilizedCharacteristics throws exception with bad array ok 141 - setImmobilizedCharacteristics accepts empty array ref ok 142 - getImmobilizedCharacteristics throws exception with argument ok 143 - setImmobilizedCharacteristics throws exception with no argument ok 144 - setImmobilizedCharacteristics throws exception with too many argument ok 145 - setImmobilizedCharacteristics accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - immobilizedCharacteristics->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - immobilizedCharacteristics->self() is a valid Bio::MAGE::Association::End ok 151 - featureReporterMaps set in new() ok 152 - setFeatureReporterMaps returns correct value ok 153 - getFeatureReporterMaps fetches correct value ok 154 - addFeatureReporterMaps returns number of items in list ok 155 - addFeatureReporterMaps adds correct value ok 156 - setFeatureReporterMaps throws exception with non-array argument ok 157 - setFeatureReporterMaps throws exception with bad argument array ok 158 - addFeatureReporterMaps throws exception with no arguments ok 159 - addFeatureReporterMaps throws exception with bad array ok 160 - setFeatureReporterMaps accepts empty array ref ok 161 - getFeatureReporterMaps throws exception with argument ok 162 - setFeatureReporterMaps throws exception with no argument ok 163 - setFeatureReporterMaps throws exception with too many argument ok 164 - setFeatureReporterMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - featureReporterMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - featureReporterMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 171 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/ReporterCompositeMap.t ......... 1..139 ok 1 - use Bio::MAGE::DesignElement::ReporterCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporterPositionSources set in new() ok 18 - setReporterPositionSources returns correct value ok 19 - getReporterPositionSources fetches correct value ok 20 - addReporterPositionSources returns number of items in list ok 21 - addReporterPositionSources adds correct value ok 22 - setReporterPositionSources throws exception with non-array argument ok 23 - setReporterPositionSources throws exception with bad argument array ok 24 - addReporterPositionSources throws exception with no arguments ok 25 - addReporterPositionSources throws exception with bad array ok 26 - setReporterPositionSources accepts empty array ref ok 27 - getReporterPositionSources throws exception with argument ok 28 - setReporterPositionSources throws exception with no argument ok 29 - setReporterPositionSources throws exception with too many argument ok 30 - setReporterPositionSources accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporterPositionSources->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporterPositionSources->self() is a valid Bio::MAGE::Association::End ok 36 - protocolApplications set in new() ok 37 - setProtocolApplications returns correct value ok 38 - getProtocolApplications fetches correct value ok 39 - addProtocolApplications returns number of items in list ok 40 - addProtocolApplications adds correct value ok 41 - setProtocolApplications throws exception with non-array argument ok 42 - setProtocolApplications throws exception with bad argument array ok 43 - addProtocolApplications throws exception with no arguments ok 44 - addProtocolApplications throws exception with bad array ok 45 - setProtocolApplications accepts empty array ref ok 46 - getProtocolApplications throws exception with argument ok 47 - setProtocolApplications throws exception with no argument ok 48 - setProtocolApplications throws exception with too many argument ok 49 - setProtocolApplications accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 126 - setCompositeSequence returns value ok 127 - getCompositeSequence fetches correct value ok 128 - setCompositeSequence throws exception with bad argument ok 129 - getCompositeSequence throws exception with argument ok 130 - setCompositeSequence throws exception with no argument ok 131 - setCompositeSequence throws exception with too many argument ok 132 - setCompositeSequence accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/ReporterDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::ReporterDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/ReporterGroup.t ................ 1..139 ok 1 - use Bio::MAGE::ArrayDesign::ReporterGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - types set in new() ok 37 - setTypes returns correct value ok 38 - getTypes fetches correct value ok 39 - addTypes returns number of items in list ok 40 - addTypes adds correct value ok 41 - setTypes throws exception with non-array argument ok 42 - setTypes throws exception with bad argument array ok 43 - addTypes throws exception with no arguments ok 44 - addTypes throws exception with bad array ok 45 - setTypes accepts empty array ref ok 46 - getTypes throws exception with argument ok 47 - setTypes throws exception with no argument ok 48 - setTypes throws exception with too many argument ok 49 - setTypes accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - types->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - types->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/ReporterPosition.t ............. 1..69 ok 1 - use Bio::MAGE::DesignElement::ReporterPosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 37 - setReporter returns value ok 38 - getReporter fetches correct value ok 39 - setReporter throws exception with bad argument ok 40 - getReporter throws exception with argument ok 41 - setReporter throws exception with no argument ok 42 - setReporter throws exception with too many argument ok 43 - setReporter accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - reporter->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - reporter->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/Security.t ..................... 1..126 ok 1 - use Bio::MAGE::AuditAndSecurity::Security; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - owner set in new() ok 18 - setOwner returns correct value ok 19 - getOwner fetches correct value ok 20 - addOwner returns number of items in list ok 21 - addOwner adds correct value ok 22 - setOwner throws exception with non-array argument ok 23 - setOwner throws exception with bad argument array ok 24 - addOwner throws exception with no arguments ok 25 - addOwner throws exception with bad array ok 26 - setOwner accepts empty array ref ok 27 - getOwner throws exception with argument ok 28 - setOwner throws exception with no argument ok 29 - setOwner throws exception with too many argument ok 30 - setOwner accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - owner->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - owner->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - securityGroups set in new() ok 107 - setSecurityGroups returns correct value ok 108 - getSecurityGroups fetches correct value ok 109 - addSecurityGroups returns number of items in list ok 110 - addSecurityGroups adds correct value ok 111 - setSecurityGroups throws exception with non-array argument ok 112 - setSecurityGroups throws exception with bad argument array ok 113 - addSecurityGroups throws exception with no arguments ok 114 - addSecurityGroups throws exception with bad array ok 115 - setSecurityGroups accepts empty array ref ok 116 - getSecurityGroups throws exception with argument ok 117 - setSecurityGroups throws exception with no argument ok 118 - setSecurityGroups throws exception with too many argument ok 119 - setSecurityGroups accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - securityGroups->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - securityGroups->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok t/SecurityGroup.t ................ 1..107 ok 1 - use Bio::MAGE::AuditAndSecurity::SecurityGroup; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - members set in new() ok 18 - setMembers returns correct value ok 19 - getMembers fetches correct value ok 20 - addMembers returns number of items in list ok 21 - addMembers adds correct value ok 22 - setMembers throws exception with non-array argument ok 23 - setMembers throws exception with bad argument array ok 24 - addMembers throws exception with no arguments ok 25 - addMembers throws exception with bad array ok 26 - setMembers accepts empty array ref ok 27 - getMembers throws exception with argument ok 28 - setMembers throws exception with no argument ok 29 - setMembers throws exception with too many argument ok 30 - setMembers accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - members->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - members->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok t/SeqFeature.t ................... 1..107 ok 1 - use Bio::MAGE::BioSequence::SeqFeature; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 3 - package ok 4 - class_name ok 5 - basis new ok 6 - basis getter/setter ok 7 - basis getter throws exception with argument ok 8 - basis setter throws exception with no argument ok 9 - basis setter throws exception with too many argument ok 10 - basis setter accepts undef ok 11 - basis setter throws exception with bad argument ok 12 - basis accepts experimental ok 13 - basis accepts computational ok 14 - basis accepts both ok 15 - basis accepts unknown ok 16 - basis accepts NA ok 17 - regions set in new() ok 18 - setRegions returns correct value ok 19 - getRegions fetches correct value ok 20 - addRegions returns number of items in list ok 21 - addRegions adds correct value ok 22 - setRegions throws exception with non-array argument ok 23 - setRegions throws exception with bad argument array ok 24 - addRegions throws exception with no arguments ok 25 - addRegions throws exception with bad array ok 26 - setRegions accepts empty array ref ok 27 - getRegions throws exception with argument ok 28 - setRegions throws exception with no argument ok 29 - setRegions throws exception with too many argument ok 30 - setRegions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - regions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - regions->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 107 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok t/SeqFeatureLocation.t ........... 1..63 ok 1 - use Bio::MAGE::BioSequence::SeqFeatureLocation; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 3 - package ok 4 - class_name ok 5 - strandType new ok 6 - strandType getter/setter ok 7 - strandType getter throws exception with argument ok 8 - strandType setter throws exception with no argument ok 9 - strandType setter throws exception with too many argument ok 10 - strandType setter accepts undef ok 11 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 12 - setCoordinate returns value ok 13 - getCoordinate fetches correct value ok 14 - setCoordinate throws exception with bad argument ok 15 - getCoordinate throws exception with argument ok 16 - setCoordinate throws exception with no argument ok 17 - setCoordinate throws exception with too many argument ok 18 - setCoordinate accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - coordinate->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - coordinate->self() is a valid Bio::MAGE::Association::End ok 24 - subregions set in new() ok 25 - setSubregions returns correct value ok 26 - getSubregions fetches correct value ok 27 - addSubregions returns number of items in list ok 28 - addSubregions adds correct value ok 29 - setSubregions throws exception with non-array argument ok 30 - setSubregions throws exception with bad argument array ok 31 - addSubregions throws exception with no arguments ok 32 - addSubregions throws exception with bad array ok 33 - setSubregions accepts empty array ref ok 34 - getSubregions throws exception with argument ok 35 - setSubregions throws exception with no argument ok 36 - setSubregions throws exception with too many argument ok 37 - setSubregions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - subregions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - subregions->self() is a valid Bio::MAGE::Association::End ok 43 - propertySets set in new() ok 44 - setPropertySets returns correct value ok 45 - getPropertySets fetches correct value ok 46 - addPropertySets returns number of items in list ok 47 - addPropertySets adds correct value ok 48 - setPropertySets throws exception with non-array argument ok 49 - setPropertySets throws exception with bad argument array ok 50 - addPropertySets throws exception with no arguments ok 51 - addPropertySets throws exception with bad array ok 52 - setPropertySets accepts empty array ref ok 53 - getPropertySets throws exception with argument ok 54 - setPropertySets throws exception with no argument ok 55 - setPropertySets throws exception with too many argument ok 56 - setPropertySets accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - propertySets->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - propertySets->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok t/SequencePosition.t ............. 1..41 ok 1 - use Bio::MAGE::BioSequence::SequencePosition; ok 2 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 3 - package ok 4 - class_name ok 5 - start new ok 6 - start getter/setter ok 7 - start getter throws exception with argument ok 8 - start setter throws exception with no argument ok 9 - start setter throws exception with too many argument ok 10 - start setter accepts undef ok 11 - end new ok 12 - end getter/setter ok 13 - end getter throws exception with argument ok 14 - end setter throws exception with no argument ok 15 - end setter throws exception with too many argument ok 16 - end setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 37 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 38 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 39 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 40 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 41 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/Software.t ..................... 1..177 ok 1 - use Bio::MAGE::Protocol::Software; ok 2 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - softwareManufacturers set in new() ok 24 - setSoftwareManufacturers returns correct value ok 25 - getSoftwareManufacturers fetches correct value ok 26 - addSoftwareManufacturers returns number of items in list ok 27 - addSoftwareManufacturers adds correct value ok 28 - setSoftwareManufacturers throws exception with non-array argument ok 29 - setSoftwareManufacturers throws exception with bad argument array ok 30 - addSoftwareManufacturers throws exception with no arguments ok 31 - addSoftwareManufacturers throws exception with bad array ok 32 - setSoftwareManufacturers accepts empty array ref ok 33 - getSoftwareManufacturers throws exception with argument ok 34 - setSoftwareManufacturers throws exception with no argument ok 35 - setSoftwareManufacturers throws exception with too many argument ok 36 - setSoftwareManufacturers accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - softwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - softwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 42 - parameterTypes set in new() ok 43 - setParameterTypes returns correct value ok 44 - getParameterTypes fetches correct value ok 45 - addParameterTypes returns number of items in list ok 46 - addParameterTypes adds correct value ok 47 - setParameterTypes throws exception with non-array argument ok 48 - setParameterTypes throws exception with bad argument array ok 49 - addParameterTypes throws exception with no arguments ok 50 - addParameterTypes throws exception with bad array ok 51 - setParameterTypes accepts empty array ref ok 52 - getParameterTypes throws exception with argument ok 53 - setParameterTypes throws exception with no argument ok 54 - setParameterTypes throws exception with too many argument ok 55 - setParameterTypes accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 61 - auditTrail set in new() ok 62 - setAuditTrail returns correct value ok 63 - getAuditTrail fetches correct value ok 64 - addAuditTrail returns number of items in list ok 65 - addAuditTrail adds correct value ok 66 - setAuditTrail throws exception with non-array argument ok 67 - setAuditTrail throws exception with bad argument array ok 68 - addAuditTrail throws exception with no arguments ok 69 - addAuditTrail throws exception with bad array ok 70 - setAuditTrail accepts empty array ref ok 71 - getAuditTrail throws exception with argument ok 72 - setAuditTrail throws exception with no argument ok 73 - setAuditTrail throws exception with too many argument ok 74 - setAuditTrail accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 80 - propertySets set in new() ok 81 - setPropertySets returns correct value ok 82 - getPropertySets fetches correct value ok 83 - addPropertySets returns number of items in list ok 84 - addPropertySets adds correct value ok 85 - setPropertySets throws exception with non-array argument ok 86 - setPropertySets throws exception with bad argument array ok 87 - addPropertySets throws exception with no arguments ok 88 - addPropertySets throws exception with bad array ok 89 - setPropertySets accepts empty array ref ok 90 - getPropertySets throws exception with argument ok 91 - setPropertySets throws exception with no argument ok 92 - setPropertySets throws exception with too many argument ok 93 - setPropertySets accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - propertySets->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - softwares set in new() ok 119 - setSoftwares returns correct value ok 120 - getSoftwares fetches correct value ok 121 - addSoftwares returns number of items in list ok 122 - addSoftwares adds correct value ok 123 - setSoftwares throws exception with non-array argument ok 124 - setSoftwares throws exception with bad argument array ok 125 - addSoftwares throws exception with no arguments ok 126 - addSoftwares throws exception with bad array ok 127 - setSoftwares accepts empty array ref ok 128 - getSoftwares throws exception with argument ok 129 - setSoftwares throws exception with no argument ok 130 - setSoftwares throws exception with too many argument ok 131 - setSoftwares accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - softwares->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - softwares->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 138 - setHardware returns value ok 139 - getHardware fetches correct value ok 140 - setHardware throws exception with bad argument ok 141 - getHardware throws exception with argument ok 142 - setHardware throws exception with no argument ok 143 - setHardware throws exception with too many argument ok 144 - setHardware accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - hardware->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - hardware->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setType returns value ok 165 - getType fetches correct value ok 166 - setType throws exception with bad argument ok 167 - getType throws exception with argument ok 168 - setType throws exception with no argument ok 169 - setType throws exception with too many argument ok 170 - setType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - type->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - type->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 177 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/SoftwareApplication.t .......... 1..120 ok 1 - use Bio::MAGE::Protocol::SoftwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 3 - package ok 4 - class_name ok 5 - releaseDate new ok 6 - releaseDate getter/setter ok 7 - releaseDate getter throws exception with argument ok 8 - releaseDate setter throws exception with no argument ok 9 - releaseDate setter throws exception with too many argument ok 10 - releaseDate setter accepts undef ok 11 - version new ok 12 - version getter/setter ok 13 - version getter throws exception with argument ok 14 - version setter throws exception with no argument ok 15 - version setter throws exception with too many argument ok 16 - version setter accepts undef ok 17 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 18 - setSoftware returns value ok 19 - getSoftware fetches correct value ok 20 - setSoftware throws exception with bad argument ok 21 - getSoftware throws exception with argument ok 22 - setSoftware throws exception with no argument ok 23 - setSoftware throws exception with too many argument ok 24 - setSoftware accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - software->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - software->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - parameterValues set in new() ok 101 - setParameterValues returns correct value ok 102 - getParameterValues fetches correct value ok 103 - addParameterValues returns number of items in list ok 104 - addParameterValues adds correct value ok 105 - setParameterValues throws exception with non-array argument ok 106 - setParameterValues throws exception with bad argument array ok 107 - addParameterValues throws exception with no arguments ok 108 - addParameterValues throws exception with bad array ok 109 - setParameterValues accepts empty array ref ok 110 - getParameterValues throws exception with argument ok 111 - setParameterValues throws exception with no argument ok 112 - setParameterValues throws exception with too many argument ok 113 - setParameterValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 120 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/SpecializedQuantitationType.t .. 1..171 ok 1 - use Bio::MAGE::QuantitationType::SpecializedQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/StandardQuantitationType.t ..... 1..183 ok 1 - use Bio::MAGE::QuantitationType::StandardQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 173 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 174 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 175 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 176 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 177 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 178 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 179 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 180 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 181 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 182 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 183 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/TemperatureUnit.t .............. 1..41 ok 1 - use Bio::MAGE::Measurement::TemperatureUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts degree_C ok 19 - unitNameCV accepts degree_F ok 20 - unitNameCV accepts K ok 21 - propertySets set in new() ok 22 - setPropertySets returns correct value ok 23 - getPropertySets fetches correct value ok 24 - addPropertySets returns number of items in list ok 25 - addPropertySets adds correct value ok 26 - setPropertySets throws exception with non-array argument ok 27 - setPropertySets throws exception with bad argument array ok 28 - addPropertySets throws exception with no arguments ok 29 - addPropertySets throws exception with bad array ok 30 - setPropertySets accepts empty array ref ok 31 - getPropertySets throws exception with argument ok 32 - setPropertySets throws exception with no argument ok 33 - setPropertySets throws exception with too many argument ok 34 - setPropertySets accepts undef ok 35 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 36 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 37 - propertySets->other() is a valid Bio::MAGE::Association::End ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->self() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 41 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/TimeUnit.t ..................... 1..47 ok 1 - use Bio::MAGE::Measurement::TimeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts years ok 19 - unitNameCV accepts months ok 20 - unitNameCV accepts weeks ok 21 - unitNameCV accepts d ok 22 - unitNameCV accepts h ok 23 - unitNameCV accepts m ok 24 - unitNameCV accepts s ok 25 - unitNameCV accepts us ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Transformation.t ............... 1..178 ok 1 - use Bio::MAGE::BioAssayData::Transformation; ok 2 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 18 - setQuantitationTypeMapping returns value ok 19 - getQuantitationTypeMapping fetches correct value ok 20 - setQuantitationTypeMapping throws exception with bad argument ok 21 - getQuantitationTypeMapping throws exception with argument ok 22 - setQuantitationTypeMapping throws exception with no argument ok 23 - setQuantitationTypeMapping throws exception with too many argument ok 24 - setQuantitationTypeMapping accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - quantitationTypeMapping->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - quantitationTypeMapping->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 31 - setDesignElementMapping returns value ok 32 - getDesignElementMapping fetches correct value ok 33 - setDesignElementMapping throws exception with bad argument ok 34 - getDesignElementMapping throws exception with argument ok 35 - setDesignElementMapping throws exception with no argument ok 36 - setDesignElementMapping throws exception with too many argument ok 37 - setDesignElementMapping accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMapping->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMapping->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - protocolApplications set in new() ok 82 - setProtocolApplications returns correct value ok 83 - getProtocolApplications fetches correct value ok 84 - addProtocolApplications returns number of items in list ok 85 - addProtocolApplications adds correct value ok 86 - setProtocolApplications throws exception with non-array argument ok 87 - setProtocolApplications throws exception with bad argument array ok 88 - addProtocolApplications throws exception with no arguments ok 89 - addProtocolApplications throws exception with bad array ok 90 - setProtocolApplications accepts empty array ref ok 91 - getProtocolApplications throws exception with argument ok 92 - setProtocolApplications throws exception with no argument ok 93 - setProtocolApplications throws exception with too many argument ok 94 - setProtocolApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - bioAssayDataSources set in new() ok 133 - setBioAssayDataSources returns correct value ok 134 - getBioAssayDataSources fetches correct value ok 135 - addBioAssayDataSources returns number of items in list ok 136 - addBioAssayDataSources adds correct value ok 137 - setBioAssayDataSources throws exception with non-array argument ok 138 - setBioAssayDataSources throws exception with bad argument array ok 139 - addBioAssayDataSources throws exception with no arguments ok 140 - addBioAssayDataSources throws exception with bad array ok 141 - setBioAssayDataSources accepts empty array ref ok 142 - getBioAssayDataSources throws exception with argument ok 143 - setBioAssayDataSources throws exception with no argument ok 144 - setBioAssayDataSources throws exception with too many argument ok 145 - setBioAssayDataSources accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - bioAssayDataSources->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - bioAssayDataSources->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 152 - setDerivedBioAssayDataTarget returns value ok 153 - getDerivedBioAssayDataTarget fetches correct value ok 154 - setDerivedBioAssayDataTarget throws exception with bad argument ok 155 - getDerivedBioAssayDataTarget throws exception with argument ok 156 - setDerivedBioAssayDataTarget throws exception with no argument ok 157 - setDerivedBioAssayDataTarget throws exception with too many argument ok 158 - setDerivedBioAssayDataTarget accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - derivedBioAssayDataTarget->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - derivedBioAssayDataTarget->self() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 165 - setBioAssayMapping returns value ok 166 - getBioAssayMapping fetches correct value ok 167 - setBioAssayMapping throws exception with bad argument ok 168 - getBioAssayMapping throws exception with argument ok 169 - setBioAssayMapping throws exception with no argument ok 170 - setBioAssayMapping throws exception with too many argument ok 171 - setBioAssayMapping accepts undef ok 172 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - bioAssayMapping->other() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 176 - bioAssayMapping->self() is a valid Bio::MAGE::Association::End ok 177 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 178 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Treatment.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::Treatment; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - sourceBioMaterialMeasurements set in new() ok 24 - setSourceBioMaterialMeasurements returns correct value ok 25 - getSourceBioMaterialMeasurements fetches correct value ok 26 - addSourceBioMaterialMeasurements returns number of items in list ok 27 - addSourceBioMaterialMeasurements adds correct value ok 28 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 29 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 30 - addSourceBioMaterialMeasurements throws exception with no arguments ok 31 - addSourceBioMaterialMeasurements throws exception with bad array ok 32 - setSourceBioMaterialMeasurements accepts empty array ref ok 33 - getSourceBioMaterialMeasurements throws exception with argument ok 34 - setSourceBioMaterialMeasurements throws exception with no argument ok 35 - setSourceBioMaterialMeasurements throws exception with too many argument ok 36 - setSourceBioMaterialMeasurements accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 42 - auditTrail set in new() ok 43 - setAuditTrail returns correct value ok 44 - getAuditTrail fetches correct value ok 45 - addAuditTrail returns number of items in list ok 46 - addAuditTrail adds correct value ok 47 - setAuditTrail throws exception with non-array argument ok 48 - setAuditTrail throws exception with bad argument array ok 49 - addAuditTrail throws exception with no arguments ok 50 - addAuditTrail throws exception with bad array ok 51 - setAuditTrail accepts empty array ref ok 52 - getAuditTrail throws exception with argument ok 53 - setAuditTrail throws exception with no argument ok 54 - setAuditTrail throws exception with too many argument ok 55 - setAuditTrail accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 61 - propertySets set in new() ok 62 - setPropertySets returns correct value ok 63 - getPropertySets fetches correct value ok 64 - addPropertySets returns number of items in list ok 65 - addPropertySets adds correct value ok 66 - setPropertySets throws exception with non-array argument ok 67 - setPropertySets throws exception with bad argument array ok 68 - addPropertySets throws exception with no arguments ok 69 - addPropertySets throws exception with bad array ok 70 - setPropertySets accepts empty array ref ok 71 - getPropertySets throws exception with argument ok 72 - setPropertySets throws exception with no argument ok 73 - setPropertySets throws exception with too many argument ok 74 - setPropertySets accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - propertySets->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - propertySets->self() is a valid Bio::MAGE::Association::End ok 80 - protocolApplications set in new() ok 81 - setProtocolApplications returns correct value ok 82 - getProtocolApplications fetches correct value ok 83 - addProtocolApplications returns number of items in list ok 84 - addProtocolApplications adds correct value ok 85 - setProtocolApplications throws exception with non-array argument ok 86 - setProtocolApplications throws exception with bad argument array ok 87 - addProtocolApplications throws exception with no arguments ok 88 - addProtocolApplications throws exception with bad array ok 89 - setProtocolApplications accepts empty array ref ok 90 - getProtocolApplications throws exception with argument ok 91 - setProtocolApplications throws exception with no argument ok 92 - setProtocolApplications throws exception with too many argument ok 93 - setProtocolApplications accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 119 - setSecurity returns value ok 120 - getSecurity fetches correct value ok 121 - setSecurity throws exception with bad argument ok 122 - getSecurity throws exception with argument ok 123 - setSecurity throws exception with no argument ok 124 - setSecurity throws exception with too many argument ok 125 - setSecurity accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - security->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - security->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 132 - setAction returns value ok 133 - getAction fetches correct value ok 134 - setAction throws exception with bad argument ok 135 - getAction throws exception with argument ok 136 - setAction throws exception with no argument ok 137 - setAction throws exception with too many argument ok 138 - setAction accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - action->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - action->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 145 - setActionMeasurement returns value ok 146 - getActionMeasurement fetches correct value ok 147 - setActionMeasurement throws exception with bad argument ok 148 - getActionMeasurement throws exception with argument ok 149 - setActionMeasurement throws exception with no argument ok 150 - setActionMeasurement throws exception with too many argument ok 151 - setActionMeasurement accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - actionMeasurement->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - actionMeasurement->self() is a valid Bio::MAGE::Association::End ok 157 - compoundMeasurements set in new() ok 158 - setCompoundMeasurements returns correct value ok 159 - getCompoundMeasurements fetches correct value ok 160 - addCompoundMeasurements returns number of items in list ok 161 - addCompoundMeasurements adds correct value ok 162 - setCompoundMeasurements throws exception with non-array argument ok 163 - setCompoundMeasurements throws exception with bad argument array ok 164 - addCompoundMeasurements throws exception with no arguments ok 165 - addCompoundMeasurements throws exception with bad array ok 166 - setCompoundMeasurements accepts empty array ref ok 167 - getCompoundMeasurements throws exception with argument ok 168 - setCompoundMeasurements throws exception with no argument ok 169 - setCompoundMeasurements throws exception with too many argument ok 170 - setCompoundMeasurements accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - compoundMeasurements->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - compoundMeasurements->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 177 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Unit.t ......................... 1..45 ok 1 - use Bio::MAGE::Measurement::Unit; ok 2 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - propertySets set in new() ok 12 - setPropertySets returns correct value ok 13 - getPropertySets fetches correct value ok 14 - addPropertySets returns number of items in list ok 15 - addPropertySets adds correct value ok 16 - setPropertySets throws exception with non-array argument ok 17 - setPropertySets throws exception with bad argument array ok 18 - addPropertySets throws exception with no arguments ok 19 - addPropertySets throws exception with bad array ok 20 - setPropertySets accepts empty array ref ok 21 - getPropertySets throws exception with argument ok 22 - setPropertySets throws exception with no argument ok 23 - setPropertySets throws exception with too many argument ok 24 - setPropertySets accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - propertySets->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - propertySets->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 31 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 32 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 33 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok 34 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 35 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok 36 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 37 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok 38 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 39 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok 40 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 41 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 43 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok 44 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok t/VolumeUnit.t ................... 1..47 ok 1 - use Bio::MAGE::Measurement::VolumeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mL ok 19 - unitNameCV accepts cc ok 20 - unitNameCV accepts dL ok 21 - unitNameCV accepts L ok 22 - unitNameCV accepts uL ok 23 - unitNameCV accepts nL ok 24 - unitNameCV accepts pL ok 25 - unitNameCV accepts fL ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Zone.t ......................... 1..137 ok 1 - use Bio::MAGE::ArrayDesign::Zone; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 3 - package ok 4 - class_name ok 5 - lowerRightY new ok 6 - lowerRightY getter/setter ok 7 - lowerRightY getter throws exception with argument ok 8 - lowerRightY setter throws exception with no argument ok 9 - lowerRightY setter throws exception with too many argument ok 10 - lowerRightY setter accepts undef ok 11 - lowerRightX new ok 12 - lowerRightX getter/setter ok 13 - lowerRightX getter throws exception with argument ok 14 - lowerRightX setter throws exception with no argument ok 15 - lowerRightX setter throws exception with too many argument ok 16 - lowerRightX setter accepts undef ok 17 - upperLeftX new ok 18 - upperLeftX getter/setter ok 19 - upperLeftX getter throws exception with argument ok 20 - upperLeftX setter throws exception with no argument ok 21 - upperLeftX setter throws exception with too many argument ok 22 - upperLeftX setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - upperLeftY new ok 30 - upperLeftY getter/setter ok 31 - upperLeftY getter throws exception with argument ok 32 - upperLeftY setter throws exception with no argument ok 33 - upperLeftY setter throws exception with too many argument ok 34 - upperLeftY setter accepts undef ok 35 - identifier new ok 36 - identifier getter/setter ok 37 - identifier getter throws exception with argument ok 38 - identifier setter throws exception with no argument ok 39 - identifier setter throws exception with too many argument ok 40 - identifier setter accepts undef ok 41 - row new ok 42 - row getter/setter ok 43 - row getter throws exception with argument ok 44 - row setter throws exception with no argument ok 45 - row setter throws exception with too many argument ok 46 - row setter accepts undef ok 47 - column new ok 48 - column getter/setter ok 49 - column getter throws exception with argument ok 50 - column setter throws exception with no argument ok 51 - column setter throws exception with too many argument ok 52 - column setter accepts undef ok 53 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 54 - setDistanceUnit returns value ok 55 - getDistanceUnit fetches correct value ok 56 - setDistanceUnit throws exception with bad argument ok 57 - getDistanceUnit throws exception with argument ok 58 - setDistanceUnit throws exception with no argument ok 59 - setDistanceUnit throws exception with too many argument ok 60 - setDistanceUnit accepts undef ok 61 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 62 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 63 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 66 - descriptions set in new() ok 67 - setDescriptions returns correct value ok 68 - getDescriptions fetches correct value ok 69 - addDescriptions returns number of items in list ok 70 - addDescriptions adds correct value ok 71 - setDescriptions throws exception with non-array argument ok 72 - setDescriptions throws exception with bad argument array ok 73 - addDescriptions throws exception with no arguments ok 74 - addDescriptions throws exception with bad array ok 75 - setDescriptions accepts empty array ref ok 76 - getDescriptions throws exception with argument ok 77 - setDescriptions throws exception with no argument ok 78 - setDescriptions throws exception with too many argument ok 79 - setDescriptions accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - descriptions->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->self() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 86 - setSecurity returns value ok 87 - getSecurity fetches correct value ok 88 - setSecurity throws exception with bad argument ok 89 - getSecurity throws exception with argument ok 90 - setSecurity throws exception with no argument ok 91 - setSecurity throws exception with too many argument ok 92 - setSecurity accepts undef ok 93 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 94 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 95 - security->other() is a valid Bio::MAGE::Association::End ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->self() is a valid Bio::MAGE::Association::End ok 98 - auditTrail set in new() ok 99 - setAuditTrail returns correct value ok 100 - getAuditTrail fetches correct value ok 101 - addAuditTrail returns number of items in list ok 102 - addAuditTrail adds correct value ok 103 - setAuditTrail throws exception with non-array argument ok 104 - setAuditTrail throws exception with bad argument array ok 105 - addAuditTrail throws exception with no arguments ok 106 - addAuditTrail throws exception with bad array ok 107 - setAuditTrail accepts empty array ref ok 108 - getAuditTrail throws exception with argument ok 109 - setAuditTrail throws exception with no argument ok 110 - setAuditTrail throws exception with too many argument ok 111 - setAuditTrail accepts undef ok 112 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 113 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 114 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 117 - propertySets set in new() ok 118 - setPropertySets returns correct value ok 119 - getPropertySets fetches correct value ok 120 - addPropertySets returns number of items in list ok 121 - addPropertySets adds correct value ok 122 - setPropertySets throws exception with non-array argument ok 123 - setPropertySets throws exception with bad argument array ok 124 - addPropertySets throws exception with no arguments ok 125 - addPropertySets throws exception with bad array ok 126 - setPropertySets accepts empty array ref ok 127 - getPropertySets throws exception with argument ok 128 - setPropertySets throws exception with no argument ok 129 - setPropertySets throws exception with too many argument ok 130 - setPropertySets accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - propertySets->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->self() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok t/ZoneDefect.t ................... 1..64 ok 1 - use Bio::MAGE::Array::ZoneDefect; ok 2 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 19 - setZone returns value ok 20 - getZone fetches correct value ok 21 - setZone throws exception with bad argument ok 22 - getZone throws exception with argument ok 23 - setZone throws exception with no argument ok 24 - setZone throws exception with too many argument ok 25 - setZone accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - zone->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - zone->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok t/ZoneGroup.t .................... 1..94 ok 1 - use Bio::MAGE::ArrayDesign::ZoneGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 3 - package ok 4 - class_name ok 5 - zonesPerY new ok 6 - zonesPerY getter/setter ok 7 - zonesPerY getter throws exception with argument ok 8 - zonesPerY setter throws exception with no argument ok 9 - zonesPerY setter throws exception with too many argument ok 10 - zonesPerY setter accepts undef ok 11 - zonesPerX new ok 12 - zonesPerX getter/setter ok 13 - zonesPerX getter throws exception with argument ok 14 - zonesPerX setter throws exception with no argument ok 15 - zonesPerX setter throws exception with too many argument ok 16 - zonesPerX setter accepts undef ok 17 - spacingsBetweenZonesX new ok 18 - spacingsBetweenZonesX getter/setter ok 19 - spacingsBetweenZonesX getter throws exception with argument ok 20 - spacingsBetweenZonesX setter throws exception with no argument ok 21 - spacingsBetweenZonesX setter throws exception with too many argument ok 22 - spacingsBetweenZonesX setter accepts undef ok 23 - spacingsBetweenZonesY new ok 24 - spacingsBetweenZonesY getter/setter ok 25 - spacingsBetweenZonesY getter throws exception with argument ok 26 - spacingsBetweenZonesY setter throws exception with no argument ok 27 - spacingsBetweenZonesY setter throws exception with too many argument ok 28 - spacingsBetweenZonesY setter accepts undef ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 30 - setZoneLayout returns value ok 31 - getZoneLayout fetches correct value ok 32 - setZoneLayout throws exception with bad argument ok 33 - getZoneLayout throws exception with argument ok 34 - setZoneLayout throws exception with no argument ok 35 - setZoneLayout throws exception with too many argument ok 36 - setZoneLayout accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - zoneLayout->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - zoneLayout->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 43 - setDistanceUnit returns value ok 44 - getDistanceUnit fetches correct value ok 45 - setDistanceUnit throws exception with bad argument ok 46 - getDistanceUnit throws exception with argument ok 47 - setDistanceUnit throws exception with no argument ok 48 - setDistanceUnit throws exception with too many argument ok 49 - setDistanceUnit accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - zoneLocations set in new() ok 75 - setZoneLocations returns correct value ok 76 - getZoneLocations fetches correct value ok 77 - addZoneLocations returns number of items in list ok 78 - addZoneLocations adds correct value ok 79 - setZoneLocations throws exception with non-array argument ok 80 - setZoneLocations throws exception with bad argument array ok 81 - addZoneLocations throws exception with no arguments ok 82 - addZoneLocations throws exception with bad array ok 83 - setZoneLocations accepts empty array ref ok 84 - getZoneLocations throws exception with argument ok 85 - setZoneLocations throws exception with no argument ok 86 - setZoneLocations throws exception with too many argument ok 87 - setZoneLocations accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - zoneLocations->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - zoneLocations->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 94 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok t/ZoneLayout.t ................... 1..62 ok 1 - use Bio::MAGE::ArrayDesign::ZoneLayout; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 3 - package ok 4 - class_name ok 5 - spacingBetweenRows new ok 6 - spacingBetweenRows getter/setter ok 7 - spacingBetweenRows getter throws exception with argument ok 8 - spacingBetweenRows setter throws exception with no argument ok 9 - spacingBetweenRows setter throws exception with too many argument ok 10 - spacingBetweenRows setter accepts undef ok 11 - numFeaturesPerCol new ok 12 - numFeaturesPerCol getter/setter ok 13 - numFeaturesPerCol getter throws exception with argument ok 14 - numFeaturesPerCol setter throws exception with no argument ok 15 - numFeaturesPerCol setter throws exception with too many argument ok 16 - numFeaturesPerCol setter accepts undef ok 17 - numFeaturesPerRow new ok 18 - numFeaturesPerRow getter/setter ok 19 - numFeaturesPerRow getter throws exception with argument ok 20 - numFeaturesPerRow setter throws exception with no argument ok 21 - numFeaturesPerRow setter throws exception with too many argument ok 22 - numFeaturesPerRow setter accepts undef ok 23 - spacingBetweenCols new ok 24 - spacingBetweenCols getter/setter ok 25 - spacingBetweenCols getter throws exception with argument ok 26 - spacingBetweenCols setter throws exception with no argument ok 27 - spacingBetweenCols setter throws exception with too many argument ok 28 - spacingBetweenCols setter accepts undef ok 29 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 30 - setDistanceUnit returns value ok 31 - getDistanceUnit fetches correct value ok 32 - setDistanceUnit throws exception with bad argument ok 33 - getDistanceUnit throws exception with argument ok 34 - setDistanceUnit throws exception with no argument ok 35 - setDistanceUnit throws exception with too many argument ok 36 - setDistanceUnit accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 42 - propertySets set in new() ok 43 - setPropertySets returns correct value ok 44 - getPropertySets fetches correct value ok 45 - addPropertySets returns number of items in list ok 46 - addPropertySets adds correct value ok 47 - setPropertySets throws exception with non-array argument ok 48 - setPropertySets throws exception with bad argument array ok 49 - addPropertySets throws exception with no arguments ok 50 - addPropertySets throws exception with bad array ok 51 - setPropertySets accepts empty array ref ok 52 - getPropertySets throws exception with argument ok 53 - setPropertySets throws exception with no argument ok 54 - setPropertySets throws exception with too many argument ok 55 - setPropertySets accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - propertySets->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok All tests successful. Files=151, Tests=16488, 14 wallclock secs ( 0.58 usr 0.15 sys + 8.27 cusr 1.04 csys = 10.04 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-mage-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Identifiable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/PhysicalBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/MeasuredBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/ImageAcquisition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayTreatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/Transformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataTuples.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ProtocolApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Software.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/SoftwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterizableApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/DesignElementGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/FeatureGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/CompositeGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ReporterGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Unit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/QuantityUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TemperatureUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/ConcentrationUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/MassUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Association.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Base.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Extendable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Describable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Identifiable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::NameValueType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-mage-perl' in '../libbio-mage-perl_20030502.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3022037 and its subdirectories I: Current time: Sun Nov 24 00:57:15 -12 2024 I: pbuilder-time-stamp: 1732453035 Sun Nov 24 12:57:15 UTC 2024 I: Signing ./b1/libbio-mage-perl_20030502.3-6_amd64.buildinfo as libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc Sun Nov 24 12:57:15 UTC 2024 I: Signed ./b1/libbio-mage-perl_20030502.3-6_amd64.buildinfo as ./b1/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc Sun Nov 24 12:57:15 UTC 2024 - build #1 for libbio-mage-perl/trixie/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sun Nov 24 12:57:15 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-7q67nDHE, removing. /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 12:57 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 12:55 b2 -rw-r--r-- 1 jenkins jenkins 2158 Nov 27 2020 libbio-mage-perl_20030502.3-6.dsc -rw------- 1 jenkins jenkins 3347 Nov 24 12:55 rbuildlog.EoHr3O3 /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1: total 2088 -rw-r--r-- 1 jenkins jenkins 1084556 Nov 24 12:57 build.log -rw-r--r-- 1 jenkins jenkins 3880 Nov 24 12:57 libbio-mage-perl_20030502.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2158 Nov 24 12:57 libbio-mage-perl_20030502.3-6.dsc -rw-r--r-- 1 jenkins jenkins 1018860 Nov 24 12:57 libbio-mage-perl_20030502.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 4780 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5662 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1289 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1467 Nov 24 12:57 libbio-mage-perl_20030502.3-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2: total 0 Sun Nov 24 12:57:16 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 00:56:00 -12 2024 I: pbuilder-time-stamp: 1732452960 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-mage-perl_20030502.3-6.dsc] I: copying [./libbio-mage-perl_20030502.3.orig.tar.gz] I: copying [./libbio-mage-perl_20030502.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 10:42:19 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-mage-perl_20030502.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-mage-perl in libbio-mage-perl-20030502.3 dpkg-source: info: unpacking libbio-mage-perl_20030502.3.orig.tar.gz dpkg-source: info: unpacking libbio-mage-perl_20030502.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0dfd5cb9156248c7b53ebb6abf560269' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3022037' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_z8Z3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1 --logfile b1/build.log libbio-mage-perl_20030502.3-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtie-ixhash-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtie-ixhash-perl; however: Package libtie-ixhash-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtie-ixhash-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Fetched 19.8 MB in 0s (72.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../23-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... 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Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes dpkg-buildpackage: info: source package libbio-mage-perl dpkg-buildpackage: info: source version 20030502.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::MAGE Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm cp MAGE/ArrayDesign/FeatureGroup.pm blib/lib/Bio/MAGE/ArrayDesign/FeatureGroup.pm cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm cp MAGE/Array/ManufactureLIMSBiomaterial.pm blib/lib/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm cp MAGE/Array/Fiducial.pm blib/lib/Bio/MAGE/Array/Fiducial.pm cp MAGE.pm blib/lib/Bio/MAGE.pm cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm cp MAGE/Base.pm blib/lib/Bio/MAGE/Base.pm cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm cp MAGE/Array/ArrayManufacture.pm blib/lib/Bio/MAGE/Array/ArrayManufacture.pm cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm cp MAGE/Array/FeatureDefect.pm blib/lib/Bio/MAGE/Array/FeatureDefect.pm cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm cp MAGE/Array/PositionDelta.pm blib/lib/Bio/MAGE/Array/PositionDelta.pm cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm cp MAGE/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData.pm cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm cp MAGE/BioAssay/BioAssayTreatment.pm blib/lib/Bio/MAGE/BioAssay/BioAssayTreatment.pm cp MAGE/BioAssayData/DesignElementDimension.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementDimension.pm cp MAGE/BioAssayData/FeatureDimension.pm blib/lib/Bio/MAGE/BioAssayData/FeatureDimension.pm cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm cp MAGE/BioAssayData/BioDataValues.pm blib/lib/Bio/MAGE/BioAssayData/BioDataValues.pm cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm cp MAGE/BioAssay/BioAssay.pm blib/lib/Bio/MAGE/BioAssay/BioAssay.pm cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm cp MAGE/BioAssayData/BioAssayDimension.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDimension.pm cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm cp MAGE/BioAssayData/DesignElementMapping.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMapping.pm cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm cp MAGE/BioAssayData/QuantitationTypeMap.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm cp MAGE/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial.pm cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm cp MAGE/BioSequence/SequencePosition.pm blib/lib/Bio/MAGE/BioSequence/SequencePosition.pm cp MAGE/Description/ExternalReference.pm blib/lib/Bio/MAGE/Description/ExternalReference.pm cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm cp MAGE/BioMaterial/BioSource.pm blib/lib/Bio/MAGE/BioMaterial/BioSource.pm cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm cp MAGE/Description/OntologyEntry.pm blib/lib/Bio/MAGE/Description/OntologyEntry.pm cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm cp MAGE/DesignElement/CompositeCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/CompositeCompositeMap.pm cp MAGE/Description/Description.pm blib/lib/Bio/MAGE/Description/Description.pm cp MAGE/DesignElement/CompositePosition.pm blib/lib/Bio/MAGE/DesignElement/CompositePosition.pm cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm cp MAGE/Description.pm blib/lib/Bio/MAGE/Description.pm cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm cp MAGE/Experiment.pm blib/lib/Bio/MAGE/Experiment.pm cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm cp MAGE/Experiment/FactorValue.pm blib/lib/Bio/MAGE/Experiment/FactorValue.pm cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm cp MAGE/DesignElement/ReporterPosition.pm blib/lib/Bio/MAGE/DesignElement/ReporterPosition.pm cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm cp MAGE/Experiment/Experiment.pm blib/lib/Bio/MAGE/Experiment/Experiment.pm cp MAGE/Measurement/Measurement.pm blib/lib/Bio/MAGE/Measurement/Measurement.pm cp MAGE/Identifiable.pm blib/lib/Bio/MAGE/Identifiable.pm cp MAGE/Measurement.pm blib/lib/Bio/MAGE/Measurement.pm cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm cp MAGE/DesignElement/Reporter.pm blib/lib/Bio/MAGE/DesignElement/Reporter.pm cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm cp MAGE/Measurement/MassUnit.pm blib/lib/Bio/MAGE/Measurement/MassUnit.pm cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm cp MAGE/QuantitationType/DerivedSignal.pm blib/lib/Bio/MAGE/QuantitationType/DerivedSignal.pm cp MAGE/Protocol/Parameter.pm blib/lib/Bio/MAGE/Protocol/Parameter.pm cp MAGE/QuantitationType/SpecializedQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm cp MAGE/QuantitationType/Failed.pm blib/lib/Bio/MAGE/QuantitationType/Failed.pm cp classes.pm blib/lib/Bio/classes.pm cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm cp MAGE/QuantitationType/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/QuantitationType.pm cp MAGE/Protocol/ProtocolApplication.pm blib/lib/Bio/MAGE/Protocol/ProtocolApplication.pm cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm cp MAGE/Protocol/Protocol.pm blib/lib/Bio/MAGE/Protocol/Protocol.pm cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm cp MAGE/NameValueType.pm blib/lib/Bio/MAGE/NameValueType.pm cp MAGE/QuantitationType/Error.pm blib/lib/Bio/MAGE/QuantitationType/Error.pm cp MAGE/Protocol/SoftwareApplication.pm blib/lib/Bio/MAGE/Protocol/SoftwareApplication.pm cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm cp MAGE/Protocol/HardwareApplication.pm blib/lib/Bio/MAGE/Protocol/HardwareApplication.pm Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/Array.t ........................ 1..170 ok 1 - use Bio::MAGE::Array::Array; ok 2 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - arrayXOrigin new ok 12 - arrayXOrigin getter/setter ok 13 - arrayXOrigin getter throws exception with argument ok 14 - arrayXOrigin setter throws exception with no argument ok 15 - arrayXOrigin setter throws exception with too many argument ok 16 - arrayXOrigin setter accepts undef ok 17 - arrayYOrigin new ok 18 - arrayYOrigin getter/setter ok 19 - arrayYOrigin getter throws exception with argument ok 20 - arrayYOrigin setter throws exception with no argument ok 21 - arrayYOrigin setter throws exception with too many argument ok 22 - arrayYOrigin setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - arrayIdentifier new ok 30 - arrayIdentifier getter/setter ok 31 - arrayIdentifier getter throws exception with argument ok 32 - arrayIdentifier setter throws exception with no argument ok 33 - arrayIdentifier setter throws exception with too many argument ok 34 - arrayIdentifier setter accepts undef ok 35 - originRelativeTo new ok 36 - originRelativeTo getter/setter ok 37 - originRelativeTo getter throws exception with argument ok 38 - originRelativeTo setter throws exception with no argument ok 39 - originRelativeTo setter throws exception with too many argument ok 40 - originRelativeTo setter accepts undef ok 41 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 42 - setArrayGroup returns value ok 43 - getArrayGroup fetches correct value ok 44 - setArrayGroup throws exception with bad argument ok 45 - getArrayGroup throws exception with argument ok 46 - setArrayGroup throws exception with no argument ok 47 - setArrayGroup throws exception with too many argument ok 48 - setArrayGroup accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - arrayGroup->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - arrayGroup->self() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 55 - setArrayDesign returns value ok 56 - getArrayDesign fetches correct value ok 57 - setArrayDesign throws exception with bad argument ok 58 - getArrayDesign throws exception with argument ok 59 - setArrayDesign throws exception with no argument ok 60 - setArrayDesign throws exception with too many argument ok 61 - setArrayDesign accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayDesign->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayDesign->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 68 - setInformation returns value ok 69 - getInformation fetches correct value ok 70 - setInformation throws exception with bad argument ok 71 - getInformation throws exception with argument ok 72 - setInformation throws exception with no argument ok 73 - setInformation throws exception with too many argument ok 74 - setInformation accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - information->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - information->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - descriptions set in new() ok 119 - setDescriptions returns correct value ok 120 - getDescriptions fetches correct value ok 121 - addDescriptions returns number of items in list ok 122 - addDescriptions adds correct value ok 123 - setDescriptions throws exception with non-array argument ok 124 - setDescriptions throws exception with bad argument array ok 125 - addDescriptions throws exception with no arguments ok 126 - addDescriptions throws exception with bad array ok 127 - setDescriptions accepts empty array ref ok 128 - getDescriptions throws exception with argument ok 129 - setDescriptions throws exception with no argument ok 130 - setDescriptions throws exception with too many argument ok 131 - setDescriptions accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - descriptions->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - descriptions->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 138 - setSecurity returns value ok 139 - getSecurity fetches correct value ok 140 - setSecurity throws exception with bad argument ok 141 - getSecurity throws exception with argument ok 142 - setSecurity throws exception with no argument ok 143 - setSecurity throws exception with too many argument ok 144 - setSecurity accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - security->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - security->self() is a valid Bio::MAGE::Association::End ok 150 - arrayManufactureDeviations set in new() ok 151 - setArrayManufactureDeviations returns correct value ok 152 - getArrayManufactureDeviations fetches correct value ok 153 - addArrayManufactureDeviations returns number of items in list ok 154 - addArrayManufactureDeviations adds correct value ok 155 - setArrayManufactureDeviations throws exception with non-array argument ok 156 - setArrayManufactureDeviations throws exception with bad argument array ok 157 - addArrayManufactureDeviations throws exception with no arguments ok 158 - addArrayManufactureDeviations throws exception with bad array ok 159 - setArrayManufactureDeviations accepts empty array ref ok 160 - getArrayManufactureDeviations throws exception with argument ok 161 - setArrayManufactureDeviations throws exception with no argument ok 162 - setArrayManufactureDeviations throws exception with too many argument ok 163 - setArrayManufactureDeviations accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - arrayManufactureDeviations->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - arrayManufactureDeviations->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 170 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok t/Array_package.t ................ 1..33 ok 1 - use Bio::MAGE::Array; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 4 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 5 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 6 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 7 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 8 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 9 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 10 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 11 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 12 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 13 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - arraygroup_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getArrayGroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getArrayGroup_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - array_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getArray_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getArray_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - arraymanufacture_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getArrayManufacture_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getArrayManufacture_list not empty ok t/ArrayDesign.t .................. 1..197 ok 1 - use Bio::MAGE::ArrayDesign::ArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - reporterGroups set in new() ok 49 - setReporterGroups returns correct value ok 50 - getReporterGroups fetches correct value ok 51 - addReporterGroups returns number of items in list ok 52 - addReporterGroups adds correct value ok 53 - setReporterGroups throws exception with non-array argument ok 54 - setReporterGroups throws exception with bad argument array ok 55 - addReporterGroups throws exception with no arguments ok 56 - addReporterGroups throws exception with bad array ok 57 - setReporterGroups accepts empty array ref ok 58 - getReporterGroups throws exception with argument ok 59 - setReporterGroups throws exception with no argument ok 60 - setReporterGroups throws exception with too many argument ok 61 - setReporterGroups accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 67 - featureGroups set in new() ok 68 - setFeatureGroups returns correct value ok 69 - getFeatureGroups fetches correct value ok 70 - addFeatureGroups returns number of items in list ok 71 - addFeatureGroups adds correct value ok 72 - setFeatureGroups throws exception with non-array argument ok 73 - setFeatureGroups throws exception with bad argument array ok 74 - addFeatureGroups throws exception with no arguments ok 75 - addFeatureGroups throws exception with bad array ok 76 - setFeatureGroups accepts empty array ref ok 77 - getFeatureGroups throws exception with argument ok 78 - setFeatureGroups throws exception with no argument ok 79 - setFeatureGroups throws exception with too many argument ok 80 - setFeatureGroups accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 86 - descriptions set in new() ok 87 - setDescriptions returns correct value ok 88 - getDescriptions fetches correct value ok 89 - addDescriptions returns number of items in list ok 90 - addDescriptions adds correct value ok 91 - setDescriptions throws exception with non-array argument ok 92 - setDescriptions throws exception with bad argument array ok 93 - addDescriptions throws exception with no arguments ok 94 - addDescriptions throws exception with bad array ok 95 - setDescriptions accepts empty array ref ok 96 - getDescriptions throws exception with argument ok 97 - setDescriptions throws exception with no argument ok 98 - setDescriptions throws exception with too many argument ok 99 - setDescriptions accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - descriptions->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - descriptions->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 106 - setSecurity returns value ok 107 - getSecurity fetches correct value ok 108 - setSecurity throws exception with bad argument ok 109 - getSecurity throws exception with argument ok 110 - setSecurity throws exception with no argument ok 111 - setSecurity throws exception with too many argument ok 112 - setSecurity accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - security->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - security->self() is a valid Bio::MAGE::Association::End ok 118 - auditTrail set in new() ok 119 - setAuditTrail returns correct value ok 120 - getAuditTrail fetches correct value ok 121 - addAuditTrail returns number of items in list ok 122 - addAuditTrail adds correct value ok 123 - setAuditTrail throws exception with non-array argument ok 124 - setAuditTrail throws exception with bad argument array ok 125 - addAuditTrail throws exception with no arguments ok 126 - addAuditTrail throws exception with bad array ok 127 - setAuditTrail accepts empty array ref ok 128 - getAuditTrail throws exception with argument ok 129 - setAuditTrail throws exception with no argument ok 130 - setAuditTrail throws exception with too many argument ok 131 - setAuditTrail accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 137 - propertySets set in new() ok 138 - setPropertySets returns correct value ok 139 - getPropertySets fetches correct value ok 140 - addPropertySets returns number of items in list ok 141 - addPropertySets adds correct value ok 142 - setPropertySets throws exception with non-array argument ok 143 - setPropertySets throws exception with bad argument array ok 144 - addPropertySets throws exception with no arguments ok 145 - addPropertySets throws exception with bad array ok 146 - setPropertySets accepts empty array ref ok 147 - getPropertySets throws exception with argument ok 148 - setPropertySets throws exception with no argument ok 149 - setPropertySets throws exception with too many argument ok 150 - setPropertySets accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - propertySets->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - propertySets->self() is a valid Bio::MAGE::Association::End ok 156 - compositeGroups set in new() ok 157 - setCompositeGroups returns correct value ok 158 - getCompositeGroups fetches correct value ok 159 - addCompositeGroups returns number of items in list ok 160 - addCompositeGroups adds correct value ok 161 - setCompositeGroups throws exception with non-array argument ok 162 - setCompositeGroups throws exception with bad argument array ok 163 - addCompositeGroups throws exception with no arguments ok 164 - addCompositeGroups throws exception with bad array ok 165 - setCompositeGroups accepts empty array ref ok 166 - getCompositeGroups throws exception with argument ok 167 - setCompositeGroups throws exception with no argument ok 168 - setCompositeGroups throws exception with too many argument ok 169 - setCompositeGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 175 - designProviders set in new() ok 176 - setDesignProviders returns correct value ok 177 - getDesignProviders fetches correct value ok 178 - addDesignProviders returns number of items in list ok 179 - addDesignProviders adds correct value ok 180 - setDesignProviders throws exception with non-array argument ok 181 - setDesignProviders throws exception with bad argument array ok 182 - addDesignProviders throws exception with no arguments ok 183 - addDesignProviders throws exception with bad array ok 184 - setDesignProviders accepts empty array ref ok 185 - getDesignProviders throws exception with argument ok 186 - setDesignProviders throws exception with no argument ok 187 - setDesignProviders throws exception with too many argument ok 188 - setDesignProviders accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - designProviders->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - designProviders->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 195 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 196 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 197 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok t/ArrayDesign_package.t .......... 1..32 ok 1 - use Bio::MAGE::ArrayDesign; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 4 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 5 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 6 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 7 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 8 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 9 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 10 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 11 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 12 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 13 - tagname ok 14 - xml_lists ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - reportergroup_list empty ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - getReporterGroup_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getReporterGroup_list not empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - compositegroup_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeGroup_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getCompositeGroup_list not empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - arraydesign_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getArrayDesign_list empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - getArrayDesign_list not empty ok t/ArrayGroup.t ................... 1..205 ok 1 - use Bio::MAGE::Array::ArrayGroup; ok 2 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 3 - package ok 4 - class_name ok 5 - arraySpacingY new ok 6 - arraySpacingY getter/setter ok 7 - arraySpacingY getter throws exception with argument ok 8 - arraySpacingY setter throws exception with no argument ok 9 - arraySpacingY setter throws exception with too many argument ok 10 - arraySpacingY setter accepts undef ok 11 - numArrays new ok 12 - numArrays getter/setter ok 13 - numArrays getter throws exception with argument ok 14 - numArrays setter throws exception with no argument ok 15 - numArrays setter throws exception with too many argument ok 16 - numArrays setter accepts undef ok 17 - width new ok 18 - width getter/setter ok 19 - width getter throws exception with argument ok 20 - width setter throws exception with no argument ok 21 - width setter throws exception with too many argument ok 22 - width setter accepts undef ok 23 - orientationMarkPosition new ok 24 - orientationMarkPosition getter/setter ok 25 - orientationMarkPosition getter throws exception with argument ok 26 - orientationMarkPosition setter throws exception with no argument ok 27 - orientationMarkPosition setter throws exception with too many argument ok 28 - orientationMarkPosition setter accepts undef ok 29 - orientationMarkPosition setter throws exception with bad argument ok 30 - orientationMarkPosition accepts top ok 31 - orientationMarkPosition accepts bottom ok 32 - orientationMarkPosition accepts left ok 33 - orientationMarkPosition accepts right ok 34 - arraySpacingX new ok 35 - arraySpacingX getter/setter ok 36 - arraySpacingX getter throws exception with argument ok 37 - arraySpacingX setter throws exception with no argument ok 38 - arraySpacingX setter throws exception with too many argument ok 39 - arraySpacingX setter accepts undef ok 40 - name new ok 41 - name getter/setter ok 42 - name getter throws exception with argument ok 43 - name setter throws exception with no argument ok 44 - name setter throws exception with too many argument ok 45 - name setter accepts undef ok 46 - barcode new ok 47 - barcode getter/setter ok 48 - barcode getter throws exception with argument ok 49 - barcode setter throws exception with no argument ok 50 - barcode setter throws exception with too many argument ok 51 - barcode setter accepts undef ok 52 - orientationMark new ok 53 - orientationMark getter/setter ok 54 - orientationMark getter throws exception with argument ok 55 - orientationMark setter throws exception with no argument ok 56 - orientationMark setter throws exception with too many argument ok 57 - orientationMark setter accepts undef ok 58 - identifier new ok 59 - identifier getter/setter ok 60 - identifier getter throws exception with argument ok 61 - identifier setter throws exception with no argument ok 62 - identifier setter throws exception with too many argument ok 63 - identifier setter accepts undef ok 64 - length new ok 65 - length getter/setter ok 66 - length getter throws exception with argument ok 67 - length setter throws exception with no argument ok 68 - length setter throws exception with too many argument ok 69 - length setter accepts undef ok 70 - arrays set in new() ok 71 - setArrays returns correct value ok 72 - getArrays fetches correct value ok 73 - addArrays returns number of items in list ok 74 - addArrays adds correct value ok 75 - setArrays throws exception with non-array argument ok 76 - setArrays throws exception with bad argument array ok 77 - addArrays throws exception with no arguments ok 78 - addArrays throws exception with bad array ok 79 - setArrays accepts empty array ref ok 80 - getArrays throws exception with argument ok 81 - setArrays throws exception with no argument ok 82 - setArrays throws exception with too many argument ok 83 - setArrays accepts undef ok 84 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - arrays->other() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - arrays->self() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 90 - setDistanceUnit returns value ok 91 - getDistanceUnit fetches correct value ok 92 - setDistanceUnit throws exception with bad argument ok 93 - getDistanceUnit throws exception with argument ok 94 - setDistanceUnit throws exception with no argument ok 95 - setDistanceUnit throws exception with too many argument ok 96 - setDistanceUnit accepts undef ok 97 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 102 - descriptions set in new() ok 103 - setDescriptions returns correct value ok 104 - getDescriptions fetches correct value ok 105 - addDescriptions returns number of items in list ok 106 - addDescriptions adds correct value ok 107 - setDescriptions throws exception with non-array argument ok 108 - setDescriptions throws exception with bad argument array ok 109 - addDescriptions throws exception with no arguments ok 110 - addDescriptions throws exception with bad array ok 111 - setDescriptions accepts empty array ref ok 112 - getDescriptions throws exception with argument ok 113 - setDescriptions throws exception with no argument ok 114 - setDescriptions throws exception with too many argument ok 115 - setDescriptions accepts undef ok 116 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->other() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - descriptions->self() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 122 - setSubstrateType returns value ok 123 - getSubstrateType fetches correct value ok 124 - setSubstrateType throws exception with bad argument ok 125 - getSubstrateType throws exception with argument ok 126 - setSubstrateType throws exception with no argument ok 127 - setSubstrateType throws exception with too many argument ok 128 - setSubstrateType accepts undef ok 129 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - substrateType->other() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - substrateType->self() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 135 - setSecurity returns value ok 136 - getSecurity fetches correct value ok 137 - setSecurity throws exception with bad argument ok 138 - getSecurity throws exception with argument ok 139 - setSecurity throws exception with no argument ok 140 - setSecurity throws exception with too many argument ok 141 - setSecurity accepts undef ok 142 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->other() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - security->self() is a valid Bio::MAGE::Association::End ok 147 - auditTrail set in new() ok 148 - setAuditTrail returns correct value ok 149 - getAuditTrail fetches correct value ok 150 - addAuditTrail returns number of items in list ok 151 - addAuditTrail adds correct value ok 152 - setAuditTrail throws exception with non-array argument ok 153 - setAuditTrail throws exception with bad argument array ok 154 - addAuditTrail throws exception with no arguments ok 155 - addAuditTrail throws exception with bad array ok 156 - setAuditTrail accepts empty array ref ok 157 - getAuditTrail throws exception with argument ok 158 - setAuditTrail throws exception with no argument ok 159 - setAuditTrail throws exception with too many argument ok 160 - setAuditTrail accepts undef ok 161 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 165 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 166 - propertySets set in new() ok 167 - setPropertySets returns correct value ok 168 - getPropertySets fetches correct value ok 169 - addPropertySets returns number of items in list ok 170 - addPropertySets adds correct value ok 171 - setPropertySets throws exception with non-array argument ok 172 - setPropertySets throws exception with bad argument array ok 173 - addPropertySets throws exception with no arguments ok 174 - addPropertySets throws exception with bad array ok 175 - setPropertySets accepts empty array ref ok 176 - getPropertySets throws exception with argument ok 177 - setPropertySets throws exception with no argument ok 178 - setPropertySets throws exception with too many argument ok 179 - setPropertySets accepts undef ok 180 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - propertySets->other() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 184 - propertySets->self() is a valid Bio::MAGE::Association::End ok 185 - fiducials set in new() ok 186 - setFiducials returns correct value ok 187 - getFiducials fetches correct value ok 188 - addFiducials returns number of items in list ok 189 - addFiducials adds correct value ok 190 - setFiducials throws exception with non-array argument ok 191 - setFiducials throws exception with bad argument array ok 192 - addFiducials throws exception with no arguments ok 193 - addFiducials throws exception with bad array ok 194 - setFiducials accepts empty array ref ok 195 - getFiducials throws exception with argument ok 196 - setFiducials throws exception with no argument ok 197 - setFiducials throws exception with too many argument ok 198 - setFiducials accepts undef ok 199 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 200 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 201 - fiducials->other() is a valid Bio::MAGE::Association::End ok 202 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 203 - fiducials->self() is a valid Bio::MAGE::Association::End ok 204 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 205 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufacture.t ............. 1..195 ok 1 - use Bio::MAGE::Array::ArrayManufacture; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - tolerance new ok 12 - tolerance getter/setter ok 13 - tolerance getter throws exception with argument ok 14 - tolerance setter throws exception with no argument ok 15 - tolerance setter throws exception with too many argument ok 16 - tolerance setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - manufacturingDate new ok 24 - manufacturingDate getter/setter ok 25 - manufacturingDate getter throws exception with argument ok 26 - manufacturingDate setter throws exception with no argument ok 27 - manufacturingDate setter throws exception with too many argument ok 28 - manufacturingDate setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - arrayManufacturers set in new() ok 49 - setArrayManufacturers returns correct value ok 50 - getArrayManufacturers fetches correct value ok 51 - addArrayManufacturers returns number of items in list ok 52 - addArrayManufacturers adds correct value ok 53 - setArrayManufacturers throws exception with non-array argument ok 54 - setArrayManufacturers throws exception with bad argument array ok 55 - addArrayManufacturers throws exception with no arguments ok 56 - addArrayManufacturers throws exception with bad array ok 57 - setArrayManufacturers accepts empty array ref ok 58 - getArrayManufacturers throws exception with argument ok 59 - setArrayManufacturers throws exception with no argument ok 60 - setArrayManufacturers throws exception with too many argument ok 61 - setArrayManufacturers accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayManufacturers->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayManufacturers->self() is a valid Bio::MAGE::Association::End ok 67 - featureLIMSs set in new() ok 68 - setFeatureLIMSs returns correct value ok 69 - getFeatureLIMSs fetches correct value ok 70 - addFeatureLIMSs returns number of items in list ok 71 - addFeatureLIMSs adds correct value ok 72 - setFeatureLIMSs throws exception with non-array argument ok 73 - setFeatureLIMSs throws exception with bad argument array ok 74 - addFeatureLIMSs throws exception with no arguments ok 75 - addFeatureLIMSs throws exception with bad array ok 76 - setFeatureLIMSs accepts empty array ref ok 77 - getFeatureLIMSs throws exception with argument ok 78 - setFeatureLIMSs throws exception with no argument ok 79 - setFeatureLIMSs throws exception with too many argument ok 80 - setFeatureLIMSs accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureLIMSs->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureLIMSs->self() is a valid Bio::MAGE::Association::End ok 86 - arrays set in new() ok 87 - setArrays returns correct value ok 88 - getArrays fetches correct value ok 89 - addArrays returns number of items in list ok 90 - addArrays adds correct value ok 91 - setArrays throws exception with non-array argument ok 92 - setArrays throws exception with bad argument array ok 93 - addArrays throws exception with no arguments ok 94 - addArrays throws exception with bad array ok 95 - setArrays accepts empty array ref ok 96 - getArrays throws exception with argument ok 97 - setArrays throws exception with no argument ok 98 - setArrays throws exception with too many argument ok 99 - setArrays accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - arrays->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - arrays->self() is a valid Bio::MAGE::Association::End ok 105 - descriptions set in new() ok 106 - setDescriptions returns correct value ok 107 - getDescriptions fetches correct value ok 108 - addDescriptions returns number of items in list ok 109 - addDescriptions adds correct value ok 110 - setDescriptions throws exception with non-array argument ok 111 - setDescriptions throws exception with bad argument array ok 112 - addDescriptions throws exception with no arguments ok 113 - addDescriptions throws exception with bad array ok 114 - setDescriptions accepts empty array ref ok 115 - getDescriptions throws exception with argument ok 116 - setDescriptions throws exception with no argument ok 117 - setDescriptions throws exception with too many argument ok 118 - setDescriptions accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - descriptions->self() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 125 - setSecurity returns value ok 126 - getSecurity fetches correct value ok 127 - setSecurity throws exception with bad argument ok 128 - getSecurity throws exception with argument ok 129 - setSecurity throws exception with no argument ok 130 - setSecurity throws exception with too many argument ok 131 - setSecurity accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - security->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - security->self() is a valid Bio::MAGE::Association::End ok 137 - auditTrail set in new() ok 138 - setAuditTrail returns correct value ok 139 - getAuditTrail fetches correct value ok 140 - addAuditTrail returns number of items in list ok 141 - addAuditTrail adds correct value ok 142 - setAuditTrail throws exception with non-array argument ok 143 - setAuditTrail throws exception with bad argument array ok 144 - addAuditTrail throws exception with no arguments ok 145 - addAuditTrail throws exception with bad array ok 146 - setAuditTrail accepts empty array ref ok 147 - getAuditTrail throws exception with argument ok 148 - setAuditTrail throws exception with no argument ok 149 - setAuditTrail throws exception with too many argument ok 150 - setAuditTrail accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 156 - propertySets set in new() ok 157 - setPropertySets returns correct value ok 158 - getPropertySets fetches correct value ok 159 - addPropertySets returns number of items in list ok 160 - addPropertySets adds correct value ok 161 - setPropertySets throws exception with non-array argument ok 162 - setPropertySets throws exception with bad argument array ok 163 - addPropertySets throws exception with no arguments ok 164 - addPropertySets throws exception with bad array ok 165 - setPropertySets accepts empty array ref ok 166 - getPropertySets throws exception with argument ok 167 - setPropertySets throws exception with no argument ok 168 - setPropertySets throws exception with too many argument ok 169 - setPropertySets accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - propertySets->self() is a valid Bio::MAGE::Association::End ok 175 - qualityControlStatistics set in new() ok 176 - setQualityControlStatistics returns correct value ok 177 - getQualityControlStatistics fetches correct value ok 178 - addQualityControlStatistics returns number of items in list ok 179 - addQualityControlStatistics adds correct value ok 180 - setQualityControlStatistics throws exception with non-array argument ok 181 - setQualityControlStatistics throws exception with bad argument array ok 182 - addQualityControlStatistics throws exception with no arguments ok 183 - addQualityControlStatistics throws exception with bad array ok 184 - setQualityControlStatistics accepts empty array ref ok 185 - getQualityControlStatistics throws exception with argument ok 186 - setQualityControlStatistics throws exception with no argument ok 187 - setQualityControlStatistics throws exception with too many argument ok 188 - setQualityControlStatistics accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 195 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufactureDeviation.t .... 1..63 ok 1 - use Bio::MAGE::Array::ArrayManufactureDeviation; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 3 - package ok 4 - class_name ok 5 - adjustments set in new() ok 6 - setAdjustments returns correct value ok 7 - getAdjustments fetches correct value ok 8 - addAdjustments returns number of items in list ok 9 - addAdjustments adds correct value ok 10 - setAdjustments throws exception with non-array argument ok 11 - setAdjustments throws exception with bad argument array ok 12 - addAdjustments throws exception with no arguments ok 13 - addAdjustments throws exception with bad array ok 14 - setAdjustments accepts empty array ref ok 15 - getAdjustments throws exception with argument ok 16 - setAdjustments throws exception with no argument ok 17 - setAdjustments throws exception with too many argument ok 18 - setAdjustments accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - adjustments->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - adjustments->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - featureDefects set in new() ok 44 - setFeatureDefects returns correct value ok 45 - getFeatureDefects fetches correct value ok 46 - addFeatureDefects returns number of items in list ok 47 - addFeatureDefects adds correct value ok 48 - setFeatureDefects throws exception with non-array argument ok 49 - setFeatureDefects throws exception with bad argument array ok 50 - addFeatureDefects throws exception with no arguments ok 51 - addFeatureDefects throws exception with bad array ok 52 - setFeatureDefects accepts empty array ref ok 53 - getFeatureDefects throws exception with argument ok 54 - setFeatureDefects throws exception with no argument ok 55 - setFeatureDefects throws exception with too many argument ok 56 - setFeatureDefects accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - featureDefects->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - featureDefects->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok t/Association.t .................. 1..8 ok 1 - CARD_1: testing full path ok 2 - CARD_1: testing import ok 3 - CARD_0_OR_1: testing full path ok 4 - CARD_0_OR_1: testing import ok 5 - CARD_1_TO_N: testing full path ok 6 - CARD_1_TO_N: testing import ok 7 - CARD_0_TO_N: testing full path ok 8 - CARD_0_TO_N: testing import ok t/Audit.t ........................ 1..104 ok 1 - use Bio::MAGE::AuditAndSecurity::Audit; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 3 - package ok 4 - class_name ok 5 - date new ok 6 - date getter/setter ok 7 - date getter throws exception with argument ok 8 - date setter throws exception with no argument ok 9 - date setter throws exception with too many argument ok 10 - date setter accepts undef ok 11 - action new ok 12 - action getter/setter ok 13 - action getter throws exception with argument ok 14 - action setter throws exception with no argument ok 15 - action setter throws exception with too many argument ok 16 - action setter accepts undef ok 17 - action setter throws exception with bad argument ok 18 - action accepts creation ok 19 - action accepts modification ok 20 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 21 - setPerformer returns value ok 22 - getPerformer fetches correct value ok 23 - setPerformer throws exception with bad argument ok 24 - getPerformer throws exception with argument ok 25 - setPerformer throws exception with no argument ok 26 - setPerformer throws exception with too many argument ok 27 - setPerformer accepts undef ok 28 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - performer->other() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 32 - performer->self() is a valid Bio::MAGE::Association::End ok 33 - descriptions set in new() ok 34 - setDescriptions returns correct value ok 35 - getDescriptions fetches correct value ok 36 - addDescriptions returns number of items in list ok 37 - addDescriptions adds correct value ok 38 - setDescriptions throws exception with non-array argument ok 39 - setDescriptions throws exception with bad argument array ok 40 - addDescriptions throws exception with no arguments ok 41 - addDescriptions throws exception with bad array ok 42 - setDescriptions accepts empty array ref ok 43 - getDescriptions throws exception with argument ok 44 - setDescriptions throws exception with no argument ok 45 - setDescriptions throws exception with too many argument ok 46 - setDescriptions accepts undef ok 47 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->other() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - descriptions->self() is a valid Bio::MAGE::Association::End ok 52 - auditTrail set in new() ok 53 - setAuditTrail returns correct value ok 54 - getAuditTrail fetches correct value ok 55 - addAuditTrail returns number of items in list ok 56 - addAuditTrail adds correct value ok 57 - setAuditTrail throws exception with non-array argument ok 58 - setAuditTrail throws exception with bad argument array ok 59 - addAuditTrail throws exception with no arguments ok 60 - addAuditTrail throws exception with bad array ok 61 - setAuditTrail accepts empty array ref ok 62 - getAuditTrail throws exception with argument ok 63 - setAuditTrail throws exception with no argument ok 64 - setAuditTrail throws exception with too many argument ok 65 - setAuditTrail accepts undef ok 66 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 72 - setSecurity returns value ok 73 - getSecurity fetches correct value ok 74 - setSecurity throws exception with bad argument ok 75 - getSecurity throws exception with argument ok 76 - setSecurity throws exception with no argument ok 77 - setSecurity throws exception with too many argument ok 78 - setSecurity accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - security->self() is a valid Bio::MAGE::Association::End ok 84 - propertySets set in new() ok 85 - setPropertySets returns correct value ok 86 - getPropertySets fetches correct value ok 87 - addPropertySets returns number of items in list ok 88 - addPropertySets adds correct value ok 89 - setPropertySets throws exception with non-array argument ok 90 - setPropertySets throws exception with bad argument array ok 91 - addPropertySets throws exception with no arguments ok 92 - addPropertySets throws exception with bad array ok 93 - setPropertySets accepts empty array ref ok 94 - getPropertySets throws exception with argument ok 95 - setPropertySets throws exception with no argument ok 96 - setPropertySets throws exception with too many argument ok 97 - setPropertySets accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - propertySets->self() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 104 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok t/AuditAndSecurity_package.t ..... 1..29 ok 1 - use Bio::MAGE::AuditAndSecurity; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 4 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 5 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 6 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 7 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 8 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 9 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 10 - tagname ok 11 - xml_lists ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - contact_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getContact_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getContact_list not empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - securitygroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getSecurityGroup_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getSecurityGroup_list not empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - security_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSecurity_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getSecurity_list not empty ok Attempt to call undefined import method with arguments ("use base qw(Base)") via package "Foo::Bar" (Perhaps you forgot to load the package?) at t/Base.t line 114. t/Base.t ......................... 1..32 ok 1 - use Bio::MAGE::Base; ok 2 - use Foo::Bar; ok 3 - An object of class 'Foo::Bar' isa 'Foo::Bar' ok 4 - Foo::Bar has 2 slots ok 5 - Foo::Bar has one attribute ok 6 - Foo::Bar has one association ok 7 - Foo::Bar has one subclass ok 8 - Foo::Bar has one superclass ok 9 - Foo::Bar class_name ok 10 - 'can set slots in new()' isa 'Foo::Bar' ok 11 - 'can retrieve foo value' isa 'HASH' ok 12 - foo has correct value ok 13 - 'can retrieve bar value' isa 'ARRAY' ok 14 - bar has correct count ok 15 - bar has correct value ok 16 - 'copy constructor works' isa 'Foo::Bar' ok 17 - 'copy constructor can retrieve foo value' isa 'HASH' ok 18 - copy constructor foo has correct value ok 19 - 'copy constructor can retrieve bar value' isa 'ARRAY' ok 20 - copy constructor bar has correct count ok 21 - copy constructor bar has correct value ok 22 - 'can set get/set slots in new()' isa 'Foo::Bar' ok 23 - 'can retrieve bar value' isa 'ARRAY' ok 24 - bar has correct count ok 25 - bar has correct value ok 26 - 'can set association/attribute slots in new()' isa 'Foo::Bar' ok 27 - attr1 has correct value ok 28 - assoc1 has correct value ok 29 - get_slot works ok 30 - get_slots works ok 31 - set_slot works ok 32 - set_slots works ok t/BibliographicReference.t ....... 1..174 ok 1 - use Bio::MAGE::BQS::BibliographicReference; ok 2 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 3 - package ok 4 - class_name ok 5 - authors new ok 6 - authors getter/setter ok 7 - authors getter throws exception with argument ok 8 - authors setter throws exception with no argument ok 9 - authors setter throws exception with too many argument ok 10 - authors setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - volume new ok 18 - volume getter/setter ok 19 - volume getter throws exception with argument ok 20 - volume setter throws exception with no argument ok 21 - volume setter throws exception with too many argument ok 22 - volume setter accepts undef ok 23 - issue new ok 24 - issue getter/setter ok 25 - issue getter throws exception with argument ok 26 - issue setter throws exception with no argument ok 27 - issue setter throws exception with too many argument ok 28 - issue setter accepts undef ok 29 - editor new ok 30 - editor getter/setter ok 31 - editor getter throws exception with argument ok 32 - editor setter throws exception with no argument ok 33 - editor setter throws exception with too many argument ok 34 - editor setter accepts undef ok 35 - title new ok 36 - title getter/setter ok 37 - title getter throws exception with argument ok 38 - title setter throws exception with no argument ok 39 - title setter throws exception with too many argument ok 40 - title setter accepts undef ok 41 - publication new ok 42 - publication getter/setter ok 43 - publication getter throws exception with argument ok 44 - publication setter throws exception with no argument ok 45 - publication setter throws exception with too many argument ok 46 - publication setter accepts undef ok 47 - publisher new ok 48 - publisher getter/setter ok 49 - publisher getter throws exception with argument ok 50 - publisher setter throws exception with no argument ok 51 - publisher setter throws exception with too many argument ok 52 - publisher setter accepts undef ok 53 - year new ok 54 - year getter/setter ok 55 - year getter throws exception with argument ok 56 - year setter throws exception with no argument ok 57 - year setter throws exception with too many argument ok 58 - year setter accepts undef ok 59 - pages new ok 60 - pages getter/setter ok 61 - pages getter throws exception with argument ok 62 - pages setter throws exception with no argument ok 63 - pages setter throws exception with too many argument ok 64 - pages setter accepts undef ok 65 - parameters set in new() ok 66 - setParameters returns correct value ok 67 - getParameters fetches correct value ok 68 - addParameters returns number of items in list ok 69 - addParameters adds correct value ok 70 - setParameters throws exception with non-array argument ok 71 - setParameters throws exception with bad argument array ok 72 - addParameters throws exception with no arguments ok 73 - addParameters throws exception with bad array ok 74 - setParameters accepts empty array ref ok 75 - getParameters throws exception with argument ok 76 - setParameters throws exception with no argument ok 77 - setParameters throws exception with too many argument ok 78 - setParameters accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - parameters->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - parameters->self() is a valid Bio::MAGE::Association::End ok 84 - accessions set in new() ok 85 - setAccessions returns correct value ok 86 - getAccessions fetches correct value ok 87 - addAccessions returns number of items in list ok 88 - addAccessions adds correct value ok 89 - setAccessions throws exception with non-array argument ok 90 - setAccessions throws exception with bad argument array ok 91 - addAccessions throws exception with no arguments ok 92 - addAccessions throws exception with bad array ok 93 - setAccessions accepts empty array ref ok 94 - getAccessions throws exception with argument ok 95 - setAccessions throws exception with no argument ok 96 - setAccessions throws exception with too many argument ok 97 - setAccessions accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - accessions->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - accessions->self() is a valid Bio::MAGE::Association::End ok 103 - descriptions set in new() ok 104 - setDescriptions returns correct value ok 105 - getDescriptions fetches correct value ok 106 - addDescriptions returns number of items in list ok 107 - addDescriptions adds correct value ok 108 - setDescriptions throws exception with non-array argument ok 109 - setDescriptions throws exception with bad argument array ok 110 - addDescriptions throws exception with no arguments ok 111 - addDescriptions throws exception with bad array ok 112 - setDescriptions accepts empty array ref ok 113 - getDescriptions throws exception with argument ok 114 - setDescriptions throws exception with no argument ok 115 - setDescriptions throws exception with too many argument ok 116 - setDescriptions accepts undef ok 117 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - descriptions->other() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->self() is a valid Bio::MAGE::Association::End ok 122 - auditTrail set in new() ok 123 - setAuditTrail returns correct value ok 124 - getAuditTrail fetches correct value ok 125 - addAuditTrail returns number of items in list ok 126 - addAuditTrail adds correct value ok 127 - setAuditTrail throws exception with non-array argument ok 128 - setAuditTrail throws exception with bad argument array ok 129 - addAuditTrail throws exception with no arguments ok 130 - addAuditTrail throws exception with bad array ok 131 - setAuditTrail accepts empty array ref ok 132 - getAuditTrail throws exception with argument ok 133 - setAuditTrail throws exception with no argument ok 134 - setAuditTrail throws exception with too many argument ok 135 - setAuditTrail accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 142 - setSecurity returns value ok 143 - getSecurity fetches correct value ok 144 - setSecurity throws exception with bad argument ok 145 - getSecurity throws exception with argument ok 146 - setSecurity throws exception with no argument ok 147 - setSecurity throws exception with too many argument ok 148 - setSecurity accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - security->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - security->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 174 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok t/BioAssay.t ..................... 1..132 ok 1 - use Bio::MAGE::BioAssay::BioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssayFactorValues set in new() ok 18 - setBioAssayFactorValues returns correct value ok 19 - getBioAssayFactorValues fetches correct value ok 20 - addBioAssayFactorValues returns number of items in list ok 21 - addBioAssayFactorValues adds correct value ok 22 - setBioAssayFactorValues throws exception with non-array argument ok 23 - setBioAssayFactorValues throws exception with bad argument array ok 24 - addBioAssayFactorValues throws exception with no arguments ok 25 - addBioAssayFactorValues throws exception with bad array ok 26 - setBioAssayFactorValues accepts empty array ref ok 27 - getBioAssayFactorValues throws exception with argument ok 28 - setBioAssayFactorValues throws exception with no argument ok 29 - setBioAssayFactorValues throws exception with too many argument ok 30 - setBioAssayFactorValues accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 36 - channels set in new() ok 37 - setChannels returns correct value ok 38 - getChannels fetches correct value ok 39 - addChannels returns number of items in list ok 40 - addChannels adds correct value ok 41 - setChannels throws exception with non-array argument ok 42 - setChannels throws exception with bad argument array ok 43 - addChannels throws exception with no arguments ok 44 - addChannels throws exception with bad array ok 45 - setChannels accepts empty array ref ok 46 - getChannels throws exception with argument ok 47 - setChannels throws exception with no argument ok 48 - setChannels throws exception with too many argument ok 49 - setChannels accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - channels->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - channels->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 126 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 127 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 128 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 129 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 130 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 131 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 132 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok t/BioAssay_package.t ............. 1..28 ok 1 - use Bio::MAGE::BioAssay; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 4 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 5 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 6 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 7 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 8 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 9 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 10 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 11 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 12 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 13 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 14 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 15 - tagname ok 16 - xml_lists ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - channel_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getChannel_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getChannel_list not empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - bioassay_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getBioAssay_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getBioAssay_list not empty ok t/BioAssayCreation.t ............. 1..154 ok 1 - use Bio::MAGE::BioAssay::BioAssayCreation; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 153 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 154 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioAssayData.t ................. 1..163 ok 1 - use Bio::MAGE::BioAssayData::BioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 133 - setBioDataValues returns value ok 134 - getBioDataValues fetches correct value ok 135 - setBioDataValues throws exception with bad argument ok 136 - getBioDataValues throws exception with argument ok 137 - setBioDataValues throws exception with no argument ok 138 - setBioDataValues throws exception with too many argument ok 139 - setBioDataValues accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 146 - setQuantitationTypeDimension returns value ok 147 - getQuantitationTypeDimension fetches correct value ok 148 - setQuantitationTypeDimension throws exception with bad argument ok 149 - getQuantitationTypeDimension throws exception with argument ok 150 - setQuantitationTypeDimension throws exception with no argument ok 151 - setQuantitationTypeDimension throws exception with too many argument ok 152 - setQuantitationTypeDimension accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 160 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 161 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 162 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 163 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok t/BioAssayData_package.t ......... 1..61 ok 1 - use Bio::MAGE::BioAssayData; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 4 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 5 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 6 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 7 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 8 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 9 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 10 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 11 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 12 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 13 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 14 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 15 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 16 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 19 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 20 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 21 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 22 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 23 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 24 - tagname ok 25 - xml_lists ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - bioassaydimension_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getBioAssayDimension_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getBioAssayDimension_list not empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - designelementdimension_list empty ok 34 - A reference of type 'ARRAY' isa 'ARRAY' ok 35 - getDesignElementDimension_list empty ok 36 - A reference of type 'ARRAY' isa 'ARRAY' ok 37 - getDesignElementDimension_list not empty ok 38 - A reference of type 'ARRAY' isa 'ARRAY' ok 39 - quantitationtypedimension_list empty ok 40 - A reference of type 'ARRAY' isa 'ARRAY' ok 41 - getQuantitationTypeDimension_list empty ok 42 - A reference of type 'ARRAY' isa 'ARRAY' ok 43 - getQuantitationTypeDimension_list not empty ok 44 - A reference of type 'ARRAY' isa 'ARRAY' ok 45 - bioassaymap_list empty ok 46 - A reference of type 'ARRAY' isa 'ARRAY' ok 47 - getBioAssayMap_list empty ok 48 - A reference of type 'ARRAY' isa 'ARRAY' ok 49 - getBioAssayMap_list not empty ok 50 - A reference of type 'ARRAY' isa 'ARRAY' ok 51 - quantitationtypemap_list empty ok 52 - A reference of type 'ARRAY' isa 'ARRAY' ok 53 - getQuantitationTypeMap_list empty ok 54 - A reference of type 'ARRAY' isa 'ARRAY' ok 55 - getQuantitationTypeMap_list not empty ok 56 - A reference of type 'ARRAY' isa 'ARRAY' ok 57 - bioassaydata_list empty ok 58 - A reference of type 'ARRAY' isa 'ARRAY' ok 59 - getBioAssayData_list empty ok 60 - A reference of type 'ARRAY' isa 'ARRAY' ok 61 - getBioAssayData_list not empty ok t/BioAssayDataCluster.t .......... 1..120 ok 1 - use Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - nodes set in new() ok 69 - setNodes returns correct value ok 70 - getNodes fetches correct value ok 71 - addNodes returns number of items in list ok 72 - addNodes adds correct value ok 73 - setNodes throws exception with non-array argument ok 74 - setNodes throws exception with bad argument array ok 75 - addNodes throws exception with no arguments ok 76 - addNodes throws exception with bad array ok 77 - setNodes accepts empty array ref ok 78 - getNodes throws exception with argument ok 79 - setNodes throws exception with no argument ok 80 - setNodes throws exception with too many argument ok 81 - setNodes accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - nodes->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - nodes->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 107 - setClusterBioAssayData returns value ok 108 - getClusterBioAssayData fetches correct value ok 109 - setClusterBioAssayData throws exception with bad argument ok 110 - getClusterBioAssayData throws exception with argument ok 111 - setClusterBioAssayData throws exception with no argument ok 112 - setClusterBioAssayData throws exception with too many argument ok 113 - setClusterBioAssayData accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - clusterBioAssayData->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - clusterBioAssayData->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 120 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok t/BioAssayDatum.t ................ 1..70 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDatum; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 12 - setQuantitationType returns value ok 13 - getQuantitationType fetches correct value ok 14 - setQuantitationType throws exception with bad argument ok 15 - getQuantitationType throws exception with argument ok 16 - setQuantitationType throws exception with no argument ok 17 - setQuantitationType throws exception with too many argument ok 18 - setQuantitationType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - quantitationType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - quantitationType->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 25 - setBioAssay returns value ok 26 - getBioAssay fetches correct value ok 27 - setBioAssay throws exception with bad argument ok 28 - getBioAssay throws exception with argument ok 29 - setBioAssay throws exception with no argument ok 30 - setBioAssay throws exception with too many argument ok 31 - setBioAssay accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - bioAssay->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - bioAssay->self() is a valid Bio::MAGE::Association::End ok 37 - propertySets set in new() ok 38 - setPropertySets returns correct value ok 39 - getPropertySets fetches correct value ok 40 - addPropertySets returns number of items in list ok 41 - addPropertySets adds correct value ok 42 - setPropertySets throws exception with non-array argument ok 43 - setPropertySets throws exception with bad argument array ok 44 - addPropertySets throws exception with no arguments ok 45 - addPropertySets throws exception with bad array ok 46 - setPropertySets accepts empty array ref ok 47 - getPropertySets throws exception with argument ok 48 - setPropertySets throws exception with no argument ok 49 - setPropertySets throws exception with too many argument ok 50 - setPropertySets accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - propertySets->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - propertySets->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 57 - setDesignElement returns value ok 58 - getDesignElement fetches correct value ok 59 - setDesignElement throws exception with bad argument ok 60 - getDesignElement throws exception with argument ok 61 - setDesignElement throws exception with no argument ok 62 - setDesignElement throws exception with too many argument ok 63 - setDesignElement accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - designElement->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - designElement->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok t/BioAssayDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssays set in new() ok 18 - setBioAssays returns correct value ok 19 - getBioAssays fetches correct value ok 20 - addBioAssays returns number of items in list ok 21 - addBioAssays adds correct value ok 22 - setBioAssays throws exception with non-array argument ok 23 - setBioAssays throws exception with bad argument array ok 24 - addBioAssays throws exception with no arguments ok 25 - addBioAssays throws exception with bad array ok 26 - setBioAssays accepts empty array ref ok 27 - getBioAssays throws exception with argument ok 28 - setBioAssays throws exception with no argument ok 29 - setBioAssays throws exception with too many argument ok 30 - setBioAssays accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok t/BioAssayMap.t .................. 1..139 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 56 - setBioAssayMapTarget returns value ok 57 - getBioAssayMapTarget fetches correct value ok 58 - setBioAssayMapTarget throws exception with bad argument ok 59 - getBioAssayMapTarget throws exception with argument ok 60 - setBioAssayMapTarget throws exception with no argument ok 61 - setBioAssayMapTarget throws exception with too many argument ok 62 - setBioAssayMapTarget accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bioAssayMapTarget->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bioAssayMapTarget->self() is a valid Bio::MAGE::Association::End ok 68 - sourceBioAssays set in new() ok 69 - setSourceBioAssays returns correct value ok 70 - getSourceBioAssays fetches correct value ok 71 - addSourceBioAssays returns number of items in list ok 72 - addSourceBioAssays adds correct value ok 73 - setSourceBioAssays throws exception with non-array argument ok 74 - setSourceBioAssays throws exception with bad argument array ok 75 - addSourceBioAssays throws exception with no arguments ok 76 - addSourceBioAssays throws exception with bad array ok 77 - setSourceBioAssays accepts empty array ref ok 78 - getSourceBioAssays throws exception with argument ok 79 - setSourceBioAssays throws exception with no argument ok 80 - setSourceBioAssays throws exception with too many argument ok 81 - setSourceBioAssays accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - sourceBioAssays->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - sourceBioAssays->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok t/BioAssayMapping.t .............. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - bioAssayMaps set in new() ok 25 - setBioAssayMaps returns correct value ok 26 - getBioAssayMaps fetches correct value ok 27 - addBioAssayMaps returns number of items in list ok 28 - addBioAssayMaps adds correct value ok 29 - setBioAssayMaps throws exception with non-array argument ok 30 - setBioAssayMaps throws exception with bad argument array ok 31 - addBioAssayMaps throws exception with no arguments ok 32 - addBioAssayMaps throws exception with bad array ok 33 - setBioAssayMaps accepts empty array ref ok 34 - getBioAssayMaps throws exception with argument ok 35 - setBioAssayMaps throws exception with no argument ok 36 - setBioAssayMaps throws exception with too many argument ok 37 - setBioAssayMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok t/BioAssayTreatment.t ............ 1..135 ok 1 - use Bio::MAGE::BioAssay::BioAssayTreatment; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 37 - setTarget returns value ok 38 - getTarget fetches correct value ok 39 - setTarget throws exception with bad argument ok 40 - getTarget throws exception with argument ok 41 - setTarget throws exception with no argument ok 42 - setTarget throws exception with too many argument ok 43 - setTarget accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - target->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - target->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 50 - setPhysicalBioAssay returns value ok 51 - getPhysicalBioAssay fetches correct value ok 52 - setPhysicalBioAssay throws exception with bad argument ok 53 - getPhysicalBioAssay throws exception with argument ok 54 - setPhysicalBioAssay throws exception with no argument ok 55 - setPhysicalBioAssay throws exception with too many argument ok 56 - setPhysicalBioAssay accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 133 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 134 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 135 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioDataCube.t .................. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataCube; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 3 - package ok 4 - class_name ok 5 - cube new ok 6 - cube getter/setter ok 7 - cube getter throws exception with argument ok 8 - cube setter throws exception with no argument ok 9 - cube setter throws exception with too many argument ok 10 - cube setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - order setter throws exception with bad argument ok 18 - order accepts BDQ ok 19 - order accepts BQD ok 20 - order accepts DBQ ok 21 - order accepts DQB ok 22 - order accepts QBD ok 23 - order accepts QDB ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataTuples.t ................ 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataTuples; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 3 - package ok 4 - class_name ok 5 - bioAssayTupleData set in new() ok 6 - setBioAssayTupleData returns correct value ok 7 - getBioAssayTupleData fetches correct value ok 8 - addBioAssayTupleData returns number of items in list ok 9 - addBioAssayTupleData adds correct value ok 10 - setBioAssayTupleData throws exception with non-array argument ok 11 - setBioAssayTupleData throws exception with bad argument array ok 12 - addBioAssayTupleData throws exception with no arguments ok 13 - addBioAssayTupleData throws exception with bad array ok 14 - setBioAssayTupleData accepts empty array ref ok 15 - getBioAssayTupleData throws exception with argument ok 16 - setBioAssayTupleData throws exception with no argument ok 17 - setBioAssayTupleData throws exception with too many argument ok 18 - setBioAssayTupleData accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - bioAssayTupleData->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - bioAssayTupleData->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataValues.t ................ 1..29 ok 1 - use Bio::MAGE::BioAssayData::BioDataValues; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 25 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 26 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 27 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 28 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 29 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok t/BioEvent.t ..................... 1..119 ok 1 - use Bio::MAGE::BioEvent::BioEvent; ok 2 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 107 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 108 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 109 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 110 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 111 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok 112 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 113 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 114 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 115 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok 116 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 117 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok t/BioEvent_package.t ............. 1..7 ok 1 - use Bio::MAGE::BioEvent; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 4 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 5 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 6 - tagname ok 7 - xml_lists ok t/BioMaterial.t .................. 1..164 ok 1 - use Bio::MAGE::BioMaterial::BioMaterial; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setMaterialType returns value ok 146 - getMaterialType fetches correct value ok 147 - setMaterialType throws exception with bad argument ok 148 - getMaterialType throws exception with argument ok 149 - setMaterialType throws exception with no argument ok 150 - setMaterialType throws exception with too many argument ok 151 - setMaterialType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - materialType->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - materialType->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 158 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 159 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 160 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 161 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 162 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 163 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 164 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok t/BioMaterial_package.t .......... 1..25 ok 1 - use Bio::MAGE::BioMaterial; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 4 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 5 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 6 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 7 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 8 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 9 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 10 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 11 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 12 - tagname ok 13 - xml_lists ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - compound_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getCompound_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getCompound_list not empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - biomaterial_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getBioMaterial_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getBioMaterial_list not empty ok t/BioMaterialMeasurement.t ....... 1..51 ok 1 - use Bio::MAGE::BioMaterial::BioMaterialMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 6 - setBioMaterial returns value ok 7 - getBioMaterial fetches correct value ok 8 - setBioMaterial throws exception with bad argument ok 9 - getBioMaterial throws exception with argument ok 10 - setBioMaterial throws exception with no argument ok 11 - setBioMaterial throws exception with too many argument ok 12 - setBioMaterial accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 19 - setMeasurement returns value ok 20 - getMeasurement fetches correct value ok 21 - setMeasurement throws exception with bad argument ok 22 - getMeasurement throws exception with argument ok 23 - setMeasurement throws exception with no argument ok 24 - setMeasurement throws exception with too many argument ok 25 - setMeasurement accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - measurement->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - measurement->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok t/BioSample.t .................... 1..171 ok 1 - use Bio::MAGE::BioMaterial::BioSample; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 158 - setMaterialType returns value ok 159 - getMaterialType fetches correct value ok 160 - setMaterialType throws exception with bad argument ok 161 - getMaterialType throws exception with argument ok 162 - setMaterialType throws exception with no argument ok 163 - setMaterialType throws exception with too many argument ok 164 - setMaterialType accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - materialType->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - materialType->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 171 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BioSequence.t .................. 1..208 ok 1 - use Bio::MAGE::BioSequence::BioSequence; ok 2 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 3 - package ok 4 - class_name ok 5 - length new ok 6 - length getter/setter ok 7 - length getter throws exception with argument ok 8 - length setter throws exception with no argument ok 9 - length setter throws exception with too many argument ok 10 - length setter accepts undef ok 11 - isApproximateLength new ok 12 - isApproximateLength getter/setter ok 13 - isApproximateLength getter throws exception with argument ok 14 - isApproximateLength setter throws exception with no argument ok 15 - isApproximateLength setter throws exception with too many argument ok 16 - isApproximateLength setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - sequence new ok 24 - sequence getter/setter ok 25 - sequence getter throws exception with argument ok 26 - sequence setter throws exception with no argument ok 27 - sequence setter throws exception with too many argument ok 28 - sequence setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - isCircular new ok 36 - isCircular getter/setter ok 37 - isCircular getter throws exception with argument ok 38 - isCircular setter throws exception with no argument ok 39 - isCircular setter throws exception with too many argument ok 40 - isCircular setter accepts undef ok 41 - sequenceDatabases set in new() ok 42 - setSequenceDatabases returns correct value ok 43 - getSequenceDatabases fetches correct value ok 44 - addSequenceDatabases returns number of items in list ok 45 - addSequenceDatabases adds correct value ok 46 - setSequenceDatabases throws exception with non-array argument ok 47 - setSequenceDatabases throws exception with bad argument array ok 48 - addSequenceDatabases throws exception with no arguments ok 49 - addSequenceDatabases throws exception with bad array ok 50 - setSequenceDatabases accepts empty array ref ok 51 - getSequenceDatabases throws exception with argument ok 52 - setSequenceDatabases throws exception with no argument ok 53 - setSequenceDatabases throws exception with too many argument ok 54 - setSequenceDatabases accepts undef ok 55 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 56 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 57 - sequenceDatabases->other() is a valid Bio::MAGE::Association::End ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - sequenceDatabases->self() is a valid Bio::MAGE::Association::End ok 60 - auditTrail set in new() ok 61 - setAuditTrail returns correct value ok 62 - getAuditTrail fetches correct value ok 63 - addAuditTrail returns number of items in list ok 64 - addAuditTrail adds correct value ok 65 - setAuditTrail throws exception with non-array argument ok 66 - setAuditTrail throws exception with bad argument array ok 67 - addAuditTrail throws exception with no arguments ok 68 - addAuditTrail throws exception with bad array ok 69 - setAuditTrail accepts empty array ref ok 70 - getAuditTrail throws exception with argument ok 71 - setAuditTrail throws exception with no argument ok 72 - setAuditTrail throws exception with too many argument ok 73 - setAuditTrail accepts undef ok 74 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 75 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 76 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 80 - setPolymerType returns value ok 81 - getPolymerType fetches correct value ok 82 - setPolymerType throws exception with bad argument ok 83 - getPolymerType throws exception with argument ok 84 - setPolymerType throws exception with no argument ok 85 - setPolymerType throws exception with too many argument ok 86 - setPolymerType accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - polymerType->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - polymerType->self() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 93 - setSpecies returns value ok 94 - getSpecies fetches correct value ok 95 - setSpecies throws exception with bad argument ok 96 - getSpecies throws exception with argument ok 97 - setSpecies throws exception with no argument ok 98 - setSpecies throws exception with too many argument ok 99 - setSpecies accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - species->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - species->self() is a valid Bio::MAGE::Association::End ok 105 - propertySets set in new() ok 106 - setPropertySets returns correct value ok 107 - getPropertySets fetches correct value ok 108 - addPropertySets returns number of items in list ok 109 - addPropertySets adds correct value ok 110 - setPropertySets throws exception with non-array argument ok 111 - setPropertySets throws exception with bad argument array ok 112 - addPropertySets throws exception with no arguments ok 113 - addPropertySets throws exception with bad array ok 114 - setPropertySets accepts empty array ref ok 115 - getPropertySets throws exception with argument ok 116 - setPropertySets throws exception with no argument ok 117 - setPropertySets throws exception with too many argument ok 118 - setPropertySets accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - propertySets->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->self() is a valid Bio::MAGE::Association::End ok 124 - ontologyEntries set in new() ok 125 - setOntologyEntries returns correct value ok 126 - getOntologyEntries fetches correct value ok 127 - addOntologyEntries returns number of items in list ok 128 - addOntologyEntries adds correct value ok 129 - setOntologyEntries throws exception with non-array argument ok 130 - setOntologyEntries throws exception with bad argument array ok 131 - addOntologyEntries throws exception with no arguments ok 132 - addOntologyEntries throws exception with bad array ok 133 - setOntologyEntries accepts empty array ref ok 134 - getOntologyEntries throws exception with argument ok 135 - setOntologyEntries throws exception with no argument ok 136 - setOntologyEntries throws exception with too many argument ok 137 - setOntologyEntries accepts undef ok 138 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - ontologyEntries->other() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - ontologyEntries->self() is a valid Bio::MAGE::Association::End ok 143 - descriptions set in new() ok 144 - setDescriptions returns correct value ok 145 - getDescriptions fetches correct value ok 146 - addDescriptions returns number of items in list ok 147 - addDescriptions adds correct value ok 148 - setDescriptions throws exception with non-array argument ok 149 - setDescriptions throws exception with bad argument array ok 150 - addDescriptions throws exception with no arguments ok 151 - addDescriptions throws exception with bad array ok 152 - setDescriptions accepts empty array ref ok 153 - getDescriptions throws exception with argument ok 154 - setDescriptions throws exception with no argument ok 155 - setDescriptions throws exception with too many argument ok 156 - setDescriptions accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - descriptions->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - descriptions->self() is a valid Bio::MAGE::Association::End ok 162 - seqFeatures set in new() ok 163 - setSeqFeatures returns correct value ok 164 - getSeqFeatures fetches correct value ok 165 - addSeqFeatures returns number of items in list ok 166 - addSeqFeatures adds correct value ok 167 - setSeqFeatures throws exception with non-array argument ok 168 - setSeqFeatures throws exception with bad argument array ok 169 - addSeqFeatures throws exception with no arguments ok 170 - addSeqFeatures throws exception with bad array ok 171 - setSeqFeatures accepts empty array ref ok 172 - getSeqFeatures throws exception with argument ok 173 - setSeqFeatures throws exception with no argument ok 174 - setSeqFeatures throws exception with too many argument ok 175 - setSeqFeatures accepts undef ok 176 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 177 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 178 - seqFeatures->other() is a valid Bio::MAGE::Association::End ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - seqFeatures->self() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 182 - setSecurity returns value ok 183 - getSecurity fetches correct value ok 184 - setSecurity throws exception with bad argument ok 185 - getSecurity throws exception with argument ok 186 - setSecurity throws exception with no argument ok 187 - setSecurity throws exception with too many argument ok 188 - setSecurity accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - security->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - security->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 195 - setType returns value ok 196 - getType fetches correct value ok 197 - setType throws exception with bad argument ok 198 - getType throws exception with argument ok 199 - setType throws exception with no argument ok 200 - setType throws exception with too many argument ok 201 - setType accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - type->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - type->self() is a valid Bio::MAGE::Association::End ok 207 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 208 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok t/BioSequence_package.t .......... 1..15 ok 1 - use Bio::MAGE::BioSequence; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 4 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 5 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 6 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 7 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - biosequence_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioSequence_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioSequence_list not empty ok t/BioSource.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::BioSource; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceContact set in new() ok 18 - setSourceContact returns correct value ok 19 - getSourceContact fetches correct value ok 20 - addSourceContact returns number of items in list ok 21 - addSourceContact adds correct value ok 22 - setSourceContact throws exception with non-array argument ok 23 - setSourceContact throws exception with bad argument array ok 24 - addSourceContact throws exception with no arguments ok 25 - addSourceContact throws exception with bad array ok 26 - setSourceContact accepts empty array ref ok 27 - getSourceContact throws exception with argument ok 28 - setSourceContact throws exception with no argument ok 29 - setSourceContact throws exception with too many argument ok 30 - setSourceContact accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceContact->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceContact->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - qualityControlStatistics set in new() ok 75 - setQualityControlStatistics returns correct value ok 76 - getQualityControlStatistics fetches correct value ok 77 - addQualityControlStatistics returns number of items in list ok 78 - addQualityControlStatistics adds correct value ok 79 - setQualityControlStatistics throws exception with non-array argument ok 80 - setQualityControlStatistics throws exception with bad argument array ok 81 - addQualityControlStatistics throws exception with no arguments ok 82 - addQualityControlStatistics throws exception with bad array ok 83 - setQualityControlStatistics accepts empty array ref ok 84 - getQualityControlStatistics throws exception with argument ok 85 - setQualityControlStatistics throws exception with no argument ok 86 - setQualityControlStatistics throws exception with too many argument ok 87 - setQualityControlStatistics accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - characteristics set in new() ok 113 - setCharacteristics returns correct value ok 114 - getCharacteristics fetches correct value ok 115 - addCharacteristics returns number of items in list ok 116 - addCharacteristics adds correct value ok 117 - setCharacteristics throws exception with non-array argument ok 118 - setCharacteristics throws exception with bad argument array ok 119 - addCharacteristics throws exception with no arguments ok 120 - addCharacteristics throws exception with bad array ok 121 - setCharacteristics accepts empty array ref ok 122 - getCharacteristics throws exception with argument ok 123 - setCharacteristics throws exception with no argument ok 124 - setCharacteristics throws exception with too many argument ok 125 - setCharacteristics accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - characteristics->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - characteristics->self() is a valid Bio::MAGE::Association::End ok 131 - treatments set in new() ok 132 - setTreatments returns correct value ok 133 - getTreatments fetches correct value ok 134 - addTreatments returns number of items in list ok 135 - addTreatments adds correct value ok 136 - setTreatments throws exception with non-array argument ok 137 - setTreatments throws exception with bad argument array ok 138 - addTreatments throws exception with no arguments ok 139 - addTreatments throws exception with bad array ok 140 - setTreatments accepts empty array ref ok 141 - getTreatments throws exception with argument ok 142 - setTreatments throws exception with no argument ok 143 - setTreatments throws exception with too many argument ok 144 - setTreatments accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - treatments->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - treatments->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BQS_package.t .................. 1..6 ok 1 - use Bio::MAGE::BQS; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 4 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 5 - tagname ok 6 - xml_lists ok t/Channel.t ...................... 1..107 ok 1 - use Bio::MAGE::BioAssay::Channel; ok 2 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - labels set in new() ok 88 - setLabels returns correct value ok 89 - getLabels fetches correct value ok 90 - addLabels returns number of items in list ok 91 - addLabels adds correct value ok 92 - setLabels throws exception with non-array argument ok 93 - setLabels throws exception with bad argument array ok 94 - addLabels throws exception with no arguments ok 95 - addLabels throws exception with bad array ok 96 - setLabels accepts empty array ref ok 97 - getLabels throws exception with argument ok 98 - setLabels throws exception with no argument ok 99 - setLabels throws exception with too many argument ok 100 - setLabels accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - labels->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - labels->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok t/CompositeCompositeMap.t ........ 1..139 ok 1 - use Bio::MAGE::DesignElement::CompositeCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 107 - setCompositeSequence returns value ok 108 - getCompositeSequence fetches correct value ok 109 - setCompositeSequence throws exception with bad argument ok 110 - getCompositeSequence throws exception with argument ok 111 - setCompositeSequence throws exception with no argument ok 112 - setCompositeSequence throws exception with too many argument ok 113 - setCompositeSequence accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 119 - compositePositionSources set in new() ok 120 - setCompositePositionSources returns correct value ok 121 - getCompositePositionSources fetches correct value ok 122 - addCompositePositionSources returns number of items in list ok 123 - addCompositePositionSources adds correct value ok 124 - setCompositePositionSources throws exception with non-array argument ok 125 - setCompositePositionSources throws exception with bad argument array ok 126 - addCompositePositionSources throws exception with no arguments ok 127 - addCompositePositionSources throws exception with bad array ok 128 - setCompositePositionSources accepts empty array ref ok 129 - getCompositePositionSources throws exception with argument ok 130 - setCompositePositionSources throws exception with no argument ok 131 - setCompositePositionSources throws exception with too many argument ok 132 - setCompositePositionSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositePositionSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositePositionSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/CompositeGroup.t ............... 1..139 ok 1 - use Bio::MAGE::ArrayDesign::CompositeGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - compositeSequences set in new() ok 37 - setCompositeSequences returns correct value ok 38 - getCompositeSequences fetches correct value ok 39 - addCompositeSequences returns number of items in list ok 40 - addCompositeSequences adds correct value ok 41 - setCompositeSequences throws exception with non-array argument ok 42 - setCompositeSequences throws exception with bad argument array ok 43 - addCompositeSequences throws exception with no arguments ok 44 - addCompositeSequences throws exception with bad array ok 45 - setCompositeSequences accepts empty array ref ok 46 - getCompositeSequences throws exception with argument ok 47 - setCompositeSequences throws exception with no argument ok 48 - setCompositeSequences throws exception with too many argument ok 49 - setCompositeSequences accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/CompositePosition.t ............ 1..69 ok 1 - use Bio::MAGE::DesignElement::CompositePosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 18 - setComposite returns value ok 19 - getComposite fetches correct value ok 20 - setComposite throws exception with bad argument ok 21 - getComposite throws exception with argument ok 22 - setComposite throws exception with no argument ok 23 - setComposite throws exception with too many argument ok 24 - setComposite accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - composite->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - composite->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/CompositeSequence.t ............ 1..158 ok 1 - use Bio::MAGE::DesignElement::CompositeSequence; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - compositeCompositeMaps set in new() ok 31 - setCompositeCompositeMaps returns correct value ok 32 - getCompositeCompositeMaps fetches correct value ok 33 - addCompositeCompositeMaps returns number of items in list ok 34 - addCompositeCompositeMaps adds correct value ok 35 - setCompositeCompositeMaps throws exception with non-array argument ok 36 - setCompositeCompositeMaps throws exception with bad argument array ok 37 - addCompositeCompositeMaps throws exception with no arguments ok 38 - addCompositeCompositeMaps throws exception with bad array ok 39 - setCompositeCompositeMaps accepts empty array ref ok 40 - getCompositeCompositeMaps throws exception with argument ok 41 - setCompositeCompositeMaps throws exception with no argument ok 42 - setCompositeCompositeMaps throws exception with too many argument ok 43 - setCompositeCompositeMaps accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - compositeCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - compositeCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - biologicalCharacteristics set in new() ok 120 - setBiologicalCharacteristics returns correct value ok 121 - getBiologicalCharacteristics fetches correct value ok 122 - addBiologicalCharacteristics returns number of items in list ok 123 - addBiologicalCharacteristics adds correct value ok 124 - setBiologicalCharacteristics throws exception with non-array argument ok 125 - setBiologicalCharacteristics throws exception with bad argument array ok 126 - addBiologicalCharacteristics throws exception with no arguments ok 127 - addBiologicalCharacteristics throws exception with bad array ok 128 - setBiologicalCharacteristics accepts empty array ref ok 129 - getBiologicalCharacteristics throws exception with argument ok 130 - setBiologicalCharacteristics throws exception with no argument ok 131 - setBiologicalCharacteristics throws exception with too many argument ok 132 - setBiologicalCharacteristics accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - biologicalCharacteristics->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - biologicalCharacteristics->self() is a valid Bio::MAGE::Association::End ok 138 - reporterCompositeMaps set in new() ok 139 - setReporterCompositeMaps returns correct value ok 140 - getReporterCompositeMaps fetches correct value ok 141 - addReporterCompositeMaps returns number of items in list ok 142 - addReporterCompositeMaps adds correct value ok 143 - setReporterCompositeMaps throws exception with non-array argument ok 144 - setReporterCompositeMaps throws exception with bad argument array ok 145 - addReporterCompositeMaps throws exception with no arguments ok 146 - addReporterCompositeMaps throws exception with bad array ok 147 - setReporterCompositeMaps accepts empty array ref ok 148 - getReporterCompositeMaps throws exception with argument ok 149 - setReporterCompositeMaps throws exception with no argument ok 150 - setReporterCompositeMaps throws exception with too many argument ok 151 - setReporterCompositeMaps accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - reporterCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - reporterCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 158 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/CompositeSequenceDimension.t ... 1..107 ok 1 - use Bio::MAGE::BioAssayData::CompositeSequenceDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - compositeSequences set in new() ok 18 - setCompositeSequences returns correct value ok 19 - getCompositeSequences fetches correct value ok 20 - addCompositeSequences returns number of items in list ok 21 - addCompositeSequences adds correct value ok 22 - setCompositeSequences throws exception with non-array argument ok 23 - setCompositeSequences throws exception with bad argument array ok 24 - addCompositeSequences throws exception with no arguments ok 25 - addCompositeSequences throws exception with bad array ok 26 - setCompositeSequences accepts empty array ref ok 27 - getCompositeSequences throws exception with argument ok 28 - setCompositeSequences throws exception with no argument ok 29 - setCompositeSequences throws exception with too many argument ok 30 - setCompositeSequences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/Compound.t ..................... 1..145 ok 1 - use Bio::MAGE::BioMaterial::Compound; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - isSolvent new ok 18 - isSolvent getter/setter ok 19 - isSolvent getter throws exception with argument ok 20 - isSolvent setter throws exception with no argument ok 21 - isSolvent setter throws exception with too many argument ok 22 - isSolvent setter accepts undef ok 23 - compoundIndices set in new() ok 24 - setCompoundIndices returns correct value ok 25 - getCompoundIndices fetches correct value ok 26 - addCompoundIndices returns number of items in list ok 27 - addCompoundIndices adds correct value ok 28 - setCompoundIndices throws exception with non-array argument ok 29 - setCompoundIndices throws exception with bad argument array ok 30 - addCompoundIndices throws exception with no arguments ok 31 - addCompoundIndices throws exception with bad array ok 32 - setCompoundIndices accepts empty array ref ok 33 - getCompoundIndices throws exception with argument ok 34 - setCompoundIndices throws exception with no argument ok 35 - setCompoundIndices throws exception with too many argument ok 36 - setCompoundIndices accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - compoundIndices->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - compoundIndices->self() is a valid Bio::MAGE::Association::End ok 42 - componentCompounds set in new() ok 43 - setComponentCompounds returns correct value ok 44 - getComponentCompounds fetches correct value ok 45 - addComponentCompounds returns number of items in list ok 46 - addComponentCompounds adds correct value ok 47 - setComponentCompounds throws exception with non-array argument ok 48 - setComponentCompounds throws exception with bad argument array ok 49 - addComponentCompounds throws exception with no arguments ok 50 - addComponentCompounds throws exception with bad array ok 51 - setComponentCompounds accepts empty array ref ok 52 - getComponentCompounds throws exception with argument ok 53 - setComponentCompounds throws exception with no argument ok 54 - setComponentCompounds throws exception with too many argument ok 55 - setComponentCompounds accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - componentCompounds->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - componentCompounds->self() is a valid Bio::MAGE::Association::End ok 61 - descriptions set in new() ok 62 - setDescriptions returns correct value ok 63 - getDescriptions fetches correct value ok 64 - addDescriptions returns number of items in list ok 65 - addDescriptions adds correct value ok 66 - setDescriptions throws exception with non-array argument ok 67 - setDescriptions throws exception with bad argument array ok 68 - addDescriptions throws exception with no arguments ok 69 - addDescriptions throws exception with bad array ok 70 - setDescriptions accepts empty array ref ok 71 - getDescriptions throws exception with argument ok 72 - setDescriptions throws exception with no argument ok 73 - setDescriptions throws exception with too many argument ok 74 - setDescriptions accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - descriptions->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - descriptions->self() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 81 - setExternalLIMS returns value ok 82 - getExternalLIMS fetches correct value ok 83 - setExternalLIMS throws exception with bad argument ok 84 - getExternalLIMS throws exception with argument ok 85 - setExternalLIMS throws exception with no argument ok 86 - setExternalLIMS throws exception with too many argument ok 87 - setExternalLIMS accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - externalLIMS->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - externalLIMS->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - auditTrail set in new() ok 107 - setAuditTrail returns correct value ok 108 - getAuditTrail fetches correct value ok 109 - addAuditTrail returns number of items in list ok 110 - addAuditTrail adds correct value ok 111 - setAuditTrail throws exception with non-array argument ok 112 - setAuditTrail throws exception with bad argument array ok 113 - addAuditTrail throws exception with no arguments ok 114 - addAuditTrail throws exception with bad array ok 115 - setAuditTrail accepts empty array ref ok 116 - getAuditTrail throws exception with argument ok 117 - setAuditTrail throws exception with no argument ok 118 - setAuditTrail throws exception with too many argument ok 119 - setAuditTrail accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 125 - propertySets set in new() ok 126 - setPropertySets returns correct value ok 127 - getPropertySets fetches correct value ok 128 - addPropertySets returns number of items in list ok 129 - addPropertySets adds correct value ok 130 - setPropertySets throws exception with non-array argument ok 131 - setPropertySets throws exception with bad argument array ok 132 - addPropertySets throws exception with no arguments ok 133 - addPropertySets throws exception with bad array ok 134 - setPropertySets accepts empty array ref ok 135 - getPropertySets throws exception with argument ok 136 - setPropertySets throws exception with no argument ok 137 - setPropertySets throws exception with too many argument ok 138 - setPropertySets accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - propertySets->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok t/CompoundMeasurement.t .......... 1..51 ok 1 - use Bio::MAGE::BioMaterial::CompoundMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 6 - setMeasurement returns value ok 7 - getMeasurement fetches correct value ok 8 - setMeasurement throws exception with bad argument ok 9 - getMeasurement throws exception with argument ok 10 - setMeasurement throws exception with no argument ok 11 - setMeasurement throws exception with too many argument ok 12 - setMeasurement accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - measurement->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - measurement->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 19 - setCompound returns value ok 20 - getCompound fetches correct value ok 21 - setCompound throws exception with bad argument ok 22 - getCompound throws exception with argument ok 23 - setCompound throws exception with no argument ok 24 - setCompound throws exception with too many argument ok 25 - setCompound accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - compound->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - compound->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok t/ConcentrationUnit.t ............ 1..51 ok 1 - use Bio::MAGE::Measurement::ConcentrationUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts M ok 19 - unitNameCV accepts mM ok 20 - unitNameCV accepts uM ok 21 - unitNameCV accepts nM ok 22 - unitNameCV accepts pM ok 23 - unitNameCV accepts fM ok 24 - unitNameCV accepts mg_per_mL ok 25 - unitNameCV accepts mL_per_L ok 26 - unitNameCV accepts g_per_L ok 27 - unitNameCV accepts gram_percent ok 28 - unitNameCV accepts mass_per_volume_percent ok 29 - unitNameCV accepts mass_per_mass_percent ok 30 - unitNameCV accepts other ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 51 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/ConfidenceIndicator.t .......... 1..190 ok 1 - use Bio::MAGE::QuantitationType::ConfidenceIndicator; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 56 - setChannel returns value ok 57 - getChannel fetches correct value ok 58 - setChannel throws exception with bad argument ok 59 - getChannel throws exception with argument ok 60 - setChannel throws exception with no argument ok 61 - setChannel throws exception with too many argument ok 62 - setChannel accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - channel->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - channel->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 185 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 186 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 187 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 188 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 189 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 190 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Contact.t ...................... 1..147 ok 1 - use Bio::MAGE::AuditAndSecurity::Contact; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - tollFreePhone new ok 24 - tollFreePhone getter/setter ok 25 - tollFreePhone getter throws exception with argument ok 26 - tollFreePhone setter throws exception with no argument ok 27 - tollFreePhone setter throws exception with too many argument ok 28 - tollFreePhone setter accepts undef ok 29 - fax new ok 30 - fax getter/setter ok 31 - fax getter throws exception with argument ok 32 - fax setter throws exception with no argument ok 33 - fax setter throws exception with too many argument ok 34 - fax setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - descriptions set in new() ok 73 - setDescriptions returns correct value ok 74 - getDescriptions fetches correct value ok 75 - addDescriptions returns number of items in list ok 76 - addDescriptions adds correct value ok 77 - setDescriptions throws exception with non-array argument ok 78 - setDescriptions throws exception with bad argument array ok 79 - addDescriptions throws exception with no arguments ok 80 - addDescriptions throws exception with bad array ok 81 - setDescriptions accepts empty array ref ok 82 - getDescriptions throws exception with argument ok 83 - setDescriptions throws exception with no argument ok 84 - setDescriptions throws exception with too many argument ok 85 - setDescriptions accepts undef ok 86 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - descriptions->other() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->self() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 92 - setSecurity returns value ok 93 - getSecurity fetches correct value ok 94 - setSecurity throws exception with bad argument ok 95 - getSecurity throws exception with argument ok 96 - setSecurity throws exception with no argument ok 97 - setSecurity throws exception with too many argument ok 98 - setSecurity accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - security->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - propertySets set in new() ok 124 - setPropertySets returns correct value ok 125 - getPropertySets fetches correct value ok 126 - addPropertySets returns number of items in list ok 127 - addPropertySets adds correct value ok 128 - setPropertySets throws exception with non-array argument ok 129 - setPropertySets throws exception with bad argument array ok 130 - addPropertySets throws exception with no arguments ok 131 - addPropertySets throws exception with bad array ok 132 - setPropertySets accepts empty array ref ok 133 - getPropertySets throws exception with argument ok 134 - setPropertySets throws exception with no argument ok 135 - setPropertySets throws exception with too many argument ok 136 - setPropertySets accepts undef ok 137 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 138 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 139 - propertySets->other() is a valid Bio::MAGE::Association::End ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->self() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 143 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 144 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 147 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok t/Database.t ..................... 1..119 ok 1 - use Bio::MAGE::Description::Database; ok 2 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - contacts set in new() ok 30 - setContacts returns correct value ok 31 - getContacts fetches correct value ok 32 - addContacts returns number of items in list ok 33 - addContacts adds correct value ok 34 - setContacts throws exception with non-array argument ok 35 - setContacts throws exception with bad argument array ok 36 - addContacts throws exception with no arguments ok 37 - addContacts throws exception with bad array ok 38 - setContacts accepts empty array ref ok 39 - getContacts throws exception with argument ok 40 - setContacts throws exception with no argument ok 41 - setContacts throws exception with too many argument ok 42 - setContacts accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - contacts->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - contacts->self() is a valid Bio::MAGE::Association::End ok 48 - descriptions set in new() ok 49 - setDescriptions returns correct value ok 50 - getDescriptions fetches correct value ok 51 - addDescriptions returns number of items in list ok 52 - addDescriptions adds correct value ok 53 - setDescriptions throws exception with non-array argument ok 54 - setDescriptions throws exception with bad argument array ok 55 - addDescriptions throws exception with no arguments ok 56 - addDescriptions throws exception with bad array ok 57 - setDescriptions accepts empty array ref ok 58 - getDescriptions throws exception with argument ok 59 - setDescriptions throws exception with no argument ok 60 - setDescriptions throws exception with too many argument ok 61 - setDescriptions accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - descriptions->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 68 - setSecurity returns value ok 69 - getSecurity fetches correct value ok 70 - setSecurity throws exception with bad argument ok 71 - getSecurity throws exception with argument ok 72 - setSecurity throws exception with no argument ok 73 - setSecurity throws exception with too many argument ok 74 - setSecurity accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - security->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok t/DatabaseEntry.t ................ 1..69 ok 1 - use Bio::MAGE::Description::DatabaseEntry; ok 2 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 3 - package ok 4 - class_name ok 5 - accessionVersion new ok 6 - accessionVersion getter/setter ok 7 - accessionVersion getter throws exception with argument ok 8 - accessionVersion setter throws exception with no argument ok 9 - accessionVersion setter throws exception with too many argument ok 10 - accessionVersion setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - accession new ok 18 - accession getter/setter ok 19 - accession getter throws exception with argument ok 20 - accession setter throws exception with no argument ok 21 - accession setter throws exception with too many argument ok 22 - accession setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 24 - setDatabase returns value ok 25 - getDatabase fetches correct value ok 26 - setDatabase throws exception with bad argument ok 27 - getDatabase throws exception with argument ok 28 - setDatabase throws exception with no argument ok 29 - setDatabase throws exception with too many argument ok 30 - setDatabase accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - database->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - database->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - setType returns value ok 38 - getType fetches correct value ok 39 - setType throws exception with bad argument ok 40 - getType throws exception with argument ok 41 - setType throws exception with no argument ok 42 - setType throws exception with too many argument ok 43 - setType accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - type->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - type->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 69 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok t/DerivedBioAssay.t .............. 1..177 ok 1 - use Bio::MAGE::BioAssay::DerivedBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 113 - setSecurity returns value ok 114 - getSecurity fetches correct value ok 115 - setSecurity throws exception with bad argument ok 116 - getSecurity throws exception with argument ok 117 - setSecurity throws exception with no argument ok 118 - setSecurity throws exception with too many argument ok 119 - setSecurity accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - security->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - security->self() is a valid Bio::MAGE::Association::End ok 125 - derivedBioAssayMap set in new() ok 126 - setDerivedBioAssayMap returns correct value ok 127 - getDerivedBioAssayMap fetches correct value ok 128 - addDerivedBioAssayMap returns number of items in list ok 129 - addDerivedBioAssayMap adds correct value ok 130 - setDerivedBioAssayMap throws exception with non-array argument ok 131 - setDerivedBioAssayMap throws exception with bad argument array ok 132 - addDerivedBioAssayMap throws exception with no arguments ok 133 - addDerivedBioAssayMap throws exception with bad array ok 134 - setDerivedBioAssayMap accepts empty array ref ok 135 - getDerivedBioAssayMap throws exception with argument ok 136 - setDerivedBioAssayMap throws exception with no argument ok 137 - setDerivedBioAssayMap throws exception with too many argument ok 138 - setDerivedBioAssayMap accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - derivedBioAssayMap->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - derivedBioAssayMap->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - derivedBioAssayData set in new() ok 158 - setDerivedBioAssayData returns correct value ok 159 - getDerivedBioAssayData fetches correct value ok 160 - addDerivedBioAssayData returns number of items in list ok 161 - addDerivedBioAssayData adds correct value ok 162 - setDerivedBioAssayData throws exception with non-array argument ok 163 - setDerivedBioAssayData throws exception with bad argument array ok 164 - addDerivedBioAssayData throws exception with no arguments ok 165 - addDerivedBioAssayData throws exception with bad array ok 166 - setDerivedBioAssayData accepts empty array ref ok 167 - getDerivedBioAssayData throws exception with argument ok 168 - setDerivedBioAssayData throws exception with no argument ok 169 - setDerivedBioAssayData throws exception with too many argument ok 170 - setDerivedBioAssayData accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - derivedBioAssayData->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - derivedBioAssayData->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/DerivedBioAssayData.t .......... 1..172 ok 1 - use Bio::MAGE::BioAssayData::DerivedBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - setProducerTransformation returns value ok 19 - getProducerTransformation fetches correct value ok 20 - setProducerTransformation throws exception with bad argument ok 21 - getProducerTransformation throws exception with argument ok 22 - setProducerTransformation throws exception with no argument ok 23 - setProducerTransformation throws exception with too many argument ok 24 - setProducerTransformation accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - producerTransformation->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - producerTransformation->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 31 - setBioAssayDimension returns value ok 32 - getBioAssayDimension fetches correct value ok 33 - setBioAssayDimension throws exception with bad argument ok 34 - getBioAssayDimension throws exception with argument ok 35 - setBioAssayDimension throws exception with no argument ok 36 - setBioAssayDimension throws exception with too many argument ok 37 - setBioAssayDimension accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - summaryStatistics set in new() ok 82 - setSummaryStatistics returns correct value ok 83 - getSummaryStatistics fetches correct value ok 84 - addSummaryStatistics returns number of items in list ok 85 - addSummaryStatistics adds correct value ok 86 - setSummaryStatistics throws exception with non-array argument ok 87 - setSummaryStatistics throws exception with bad argument array ok 88 - addSummaryStatistics throws exception with no arguments ok 89 - addSummaryStatistics throws exception with bad array ok 90 - setSummaryStatistics accepts empty array ref ok 91 - getSummaryStatistics throws exception with argument ok 92 - setSummaryStatistics throws exception with no argument ok 93 - setSummaryStatistics throws exception with too many argument ok 94 - setSummaryStatistics accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 120 - setDesignElementDimension returns value ok 121 - getDesignElementDimension fetches correct value ok 122 - setDesignElementDimension throws exception with bad argument ok 123 - getDesignElementDimension throws exception with argument ok 124 - setDesignElementDimension throws exception with no argument ok 125 - setDesignElementDimension throws exception with too many argument ok 126 - setDesignElementDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 133 - setQuantitationTypeDimension returns value ok 134 - getQuantitationTypeDimension fetches correct value ok 135 - setQuantitationTypeDimension throws exception with bad argument ok 136 - getQuantitationTypeDimension throws exception with argument ok 137 - setQuantitationTypeDimension throws exception with no argument ok 138 - setQuantitationTypeDimension throws exception with too many argument ok 139 - setQuantitationTypeDimension accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 146 - setSecurity returns value ok 147 - getSecurity fetches correct value ok 148 - setSecurity throws exception with bad argument ok 149 - getSecurity throws exception with argument ok 150 - setSecurity throws exception with no argument ok 151 - setSecurity throws exception with too many argument ok 152 - setSecurity accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - security->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - security->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 159 - setBioDataValues returns value ok 160 - getBioDataValues fetches correct value ok 161 - setBioDataValues throws exception with bad argument ok 162 - getBioDataValues throws exception with argument ok 163 - setBioDataValues throws exception with no argument ok 164 - setBioDataValues throws exception with too many argument ok 165 - setBioDataValues accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 172 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/DerivedSignal.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::DerivedSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Describable.t .................. 1..98 ok 1 - use Bio::MAGE::Describable; ok 2 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 25 - setSecurity returns value ok 26 - getSecurity fetches correct value ok 27 - setSecurity throws exception with bad argument ok 28 - getSecurity throws exception with argument ok 29 - setSecurity throws exception with no argument ok 30 - setSecurity throws exception with too many argument ok 31 - setSecurity accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - security->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - security->self() is a valid Bio::MAGE::Association::End ok 37 - auditTrail set in new() ok 38 - setAuditTrail returns correct value ok 39 - getAuditTrail fetches correct value ok 40 - addAuditTrail returns number of items in list ok 41 - addAuditTrail adds correct value ok 42 - setAuditTrail throws exception with non-array argument ok 43 - setAuditTrail throws exception with bad argument array ok 44 - addAuditTrail throws exception with no arguments ok 45 - addAuditTrail throws exception with bad array ok 46 - setAuditTrail accepts empty array ref ok 47 - getAuditTrail throws exception with argument ok 48 - setAuditTrail throws exception with no argument ok 49 - setAuditTrail throws exception with too many argument ok 50 - setAuditTrail accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok 77 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 78 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok 79 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 80 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok 81 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 82 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok 83 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 84 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok 85 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 86 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok 87 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 88 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok 89 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 90 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok 91 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 92 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok 93 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 94 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok 95 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok 97 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 98 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok t/Description.t .................. 1..158 ok 1 - use Bio::MAGE::Description::Description; ok 2 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - text new ok 12 - text getter/setter ok 13 - text getter throws exception with argument ok 14 - text setter throws exception with no argument ok 15 - text setter throws exception with too many argument ok 16 - text setter accepts undef ok 17 - databaseReferences set in new() ok 18 - setDatabaseReferences returns correct value ok 19 - getDatabaseReferences fetches correct value ok 20 - addDatabaseReferences returns number of items in list ok 21 - addDatabaseReferences adds correct value ok 22 - setDatabaseReferences throws exception with non-array argument ok 23 - setDatabaseReferences throws exception with bad argument array ok 24 - addDatabaseReferences throws exception with no arguments ok 25 - addDatabaseReferences throws exception with bad array ok 26 - setDatabaseReferences accepts empty array ref ok 27 - getDatabaseReferences throws exception with argument ok 28 - setDatabaseReferences throws exception with no argument ok 29 - setDatabaseReferences throws exception with too many argument ok 30 - setDatabaseReferences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - databaseReferences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - databaseReferences->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 37 - setExternalReference returns value ok 38 - getExternalReference fetches correct value ok 39 - setExternalReference throws exception with bad argument ok 40 - getExternalReference throws exception with argument ok 41 - setExternalReference throws exception with no argument ok 42 - setExternalReference throws exception with too many argument ok 43 - setExternalReference accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - externalReference->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - externalReference->self() is a valid Bio::MAGE::Association::End ok 49 - bibliographicReferences set in new() ok 50 - setBibliographicReferences returns correct value ok 51 - getBibliographicReferences fetches correct value ok 52 - addBibliographicReferences returns number of items in list ok 53 - addBibliographicReferences adds correct value ok 54 - setBibliographicReferences throws exception with non-array argument ok 55 - setBibliographicReferences throws exception with bad argument array ok 56 - addBibliographicReferences throws exception with no arguments ok 57 - addBibliographicReferences throws exception with bad array ok 58 - setBibliographicReferences accepts empty array ref ok 59 - getBibliographicReferences throws exception with argument ok 60 - setBibliographicReferences throws exception with no argument ok 61 - setBibliographicReferences throws exception with too many argument ok 62 - setBibliographicReferences accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bibliographicReferences->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bibliographicReferences->self() is a valid Bio::MAGE::Association::End ok 68 - descriptions set in new() ok 69 - setDescriptions returns correct value ok 70 - getDescriptions fetches correct value ok 71 - addDescriptions returns number of items in list ok 72 - addDescriptions adds correct value ok 73 - setDescriptions throws exception with non-array argument ok 74 - setDescriptions throws exception with bad argument array ok 75 - addDescriptions throws exception with no arguments ok 76 - addDescriptions throws exception with bad array ok 77 - setDescriptions accepts empty array ref ok 78 - getDescriptions throws exception with argument ok 79 - setDescriptions throws exception with no argument ok 80 - setDescriptions throws exception with too many argument ok 81 - setDescriptions accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - descriptions->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - annotations set in new() ok 139 - setAnnotations returns correct value ok 140 - getAnnotations fetches correct value ok 141 - addAnnotations returns number of items in list ok 142 - addAnnotations adds correct value ok 143 - setAnnotations throws exception with non-array argument ok 144 - setAnnotations throws exception with bad argument array ok 145 - addAnnotations throws exception with no arguments ok 146 - addAnnotations throws exception with bad array ok 147 - setAnnotations accepts empty array ref ok 148 - getAnnotations throws exception with argument ok 149 - setAnnotations throws exception with no argument ok 150 - setAnnotations throws exception with too many argument ok 151 - setAnnotations accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - annotations->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - annotations->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 158 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok t/Description_package.t .......... 1..16 ok 1 - use Bio::MAGE::Description; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 4 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 5 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 6 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 7 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 8 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 9 - tagname ok 10 - xml_lists ok 11 - A reference of type 'ARRAY' isa 'ARRAY' ok 12 - database_list empty ok 13 - A reference of type 'ARRAY' isa 'ARRAY' ok 14 - getDatabase_list empty ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - getDatabase_list not empty ok t/DesignElement.t ................ 1..107 ok 1 - use Bio::MAGE::DesignElement::DesignElement; ok 2 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 101 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 103 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok 104 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 105 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok t/DesignElement_package.t ........ 1..48 ok 1 - use Bio::MAGE::DesignElement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 4 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 5 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 6 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 7 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 8 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 9 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 10 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 11 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 12 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 13 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 14 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 15 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 16 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 17 - tagname ok 18 - xml_lists ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - compositesequence_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getCompositeSequence_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeSequence_list not empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - reporter_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getReporter_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getReporter_list not empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - compositecompositemap_list empty ok 33 - A reference of type 'ARRAY' isa 'ARRAY' ok 34 - getCompositeCompositeMap_list empty ok 35 - A reference of type 'ARRAY' isa 'ARRAY' ok 36 - getCompositeCompositeMap_list not empty ok 37 - A reference of type 'ARRAY' isa 'ARRAY' ok 38 - reportercompositemap_list empty ok 39 - A reference of type 'ARRAY' isa 'ARRAY' ok 40 - getReporterCompositeMap_list empty ok 41 - A reference of type 'ARRAY' isa 'ARRAY' ok 42 - getReporterCompositeMap_list not empty ok 43 - A reference of type 'ARRAY' isa 'ARRAY' ok 44 - featurereportermap_list empty ok 45 - A reference of type 'ARRAY' isa 'ARRAY' ok 46 - getFeatureReporterMap_list empty ok 47 - A reference of type 'ARRAY' isa 'ARRAY' ok 48 - getFeatureReporterMap_list not empty ok t/DesignElementDimension.t ....... 1..94 ok 1 - use Bio::MAGE::BioAssayData::DesignElementDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 88 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 89 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 90 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 91 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 92 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 93 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 94 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok t/DesignElementGroup.t ........... 1..126 ok 1 - use Bio::MAGE::ArrayDesign::DesignElementGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setSpecies returns value ok 89 - getSpecies fetches correct value ok 90 - setSpecies throws exception with bad argument ok 91 - getSpecies throws exception with argument ok 92 - setSpecies throws exception with no argument ok 93 - setSpecies throws exception with too many argument ok 94 - setSpecies accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - species->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - species->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 120 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 121 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 122 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 123 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 124 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok t/DesignElementMap.t ............. 1..113 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 107 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 108 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 109 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 110 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 111 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 112 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 113 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok t/DesignElementMapping.t ......... 1..44 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - designElementMaps set in new() ok 25 - setDesignElementMaps returns correct value ok 26 - getDesignElementMaps fetches correct value ok 27 - addDesignElementMaps returns number of items in list ok 28 - addDesignElementMaps adds correct value ok 29 - setDesignElementMaps throws exception with non-array argument ok 30 - setDesignElementMaps throws exception with bad argument array ok 31 - addDesignElementMaps throws exception with no arguments ok 32 - addDesignElementMaps throws exception with bad array ok 33 - setDesignElementMaps accepts empty array ref ok 34 - getDesignElementMaps throws exception with argument ok 35 - setDesignElementMaps throws exception with no argument ok 36 - setDesignElementMaps throws exception with too many argument ok 37 - setDesignElementMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok t/DistanceUnit.t ................. 1..46 ok 1 - use Bio::MAGE::Measurement::DistanceUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts fm ok 19 - unitNameCV accepts pm ok 20 - unitNameCV accepts nm ok 21 - unitNameCV accepts um ok 22 - unitNameCV accepts mm ok 23 - unitNameCV accepts cm ok 24 - unitNameCV accepts m ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Error.t ........................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::Error; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/ExpectedValue.t ................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::ExpectedValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/Experiment.t ................... 1..183 ok 1 - use Bio::MAGE::Experiment::Experiment; ok 2 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - experimentDesigns set in new() ok 18 - setExperimentDesigns returns correct value ok 19 - getExperimentDesigns fetches correct value ok 20 - addExperimentDesigns returns number of items in list ok 21 - addExperimentDesigns adds correct value ok 22 - setExperimentDesigns throws exception with non-array argument ok 23 - setExperimentDesigns throws exception with bad argument array ok 24 - addExperimentDesigns throws exception with no arguments ok 25 - addExperimentDesigns throws exception with bad array ok 26 - setExperimentDesigns accepts empty array ref ok 27 - getExperimentDesigns throws exception with argument ok 28 - setExperimentDesigns throws exception with no argument ok 29 - setExperimentDesigns throws exception with too many argument ok 30 - setExperimentDesigns accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - experimentDesigns->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - experimentDesigns->self() is a valid Bio::MAGE::Association::End ok 36 - providers set in new() ok 37 - setProviders returns correct value ok 38 - getProviders fetches correct value ok 39 - addProviders returns number of items in list ok 40 - addProviders adds correct value ok 41 - setProviders throws exception with non-array argument ok 42 - setProviders throws exception with bad argument array ok 43 - addProviders throws exception with no arguments ok 44 - addProviders throws exception with bad array ok 45 - setProviders accepts empty array ref ok 46 - getProviders throws exception with argument ok 47 - setProviders throws exception with no argument ok 48 - setProviders throws exception with too many argument ok 49 - setProviders accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - providers->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - providers->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - propertySets set in new() ok 75 - setPropertySets returns correct value ok 76 - getPropertySets fetches correct value ok 77 - addPropertySets returns number of items in list ok 78 - addPropertySets adds correct value ok 79 - setPropertySets throws exception with non-array argument ok 80 - setPropertySets throws exception with bad argument array ok 81 - addPropertySets throws exception with no arguments ok 82 - addPropertySets throws exception with bad array ok 83 - setPropertySets accepts empty array ref ok 84 - getPropertySets throws exception with argument ok 85 - setPropertySets throws exception with no argument ok 86 - setPropertySets throws exception with too many argument ok 87 - setPropertySets accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - propertySets->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - propertySets->self() is a valid Bio::MAGE::Association::End ok 93 - analysisResults set in new() ok 94 - setAnalysisResults returns correct value ok 95 - getAnalysisResults fetches correct value ok 96 - addAnalysisResults returns number of items in list ok 97 - addAnalysisResults adds correct value ok 98 - setAnalysisResults throws exception with non-array argument ok 99 - setAnalysisResults throws exception with bad argument array ok 100 - addAnalysisResults throws exception with no arguments ok 101 - addAnalysisResults throws exception with bad array ok 102 - setAnalysisResults accepts empty array ref ok 103 - getAnalysisResults throws exception with argument ok 104 - setAnalysisResults throws exception with no argument ok 105 - setAnalysisResults throws exception with too many argument ok 106 - setAnalysisResults accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - analysisResults->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - analysisResults->self() is a valid Bio::MAGE::Association::End ok 112 - bioAssays set in new() ok 113 - setBioAssays returns correct value ok 114 - getBioAssays fetches correct value ok 115 - addBioAssays returns number of items in list ok 116 - addBioAssays adds correct value ok 117 - setBioAssays throws exception with non-array argument ok 118 - setBioAssays throws exception with bad argument array ok 119 - addBioAssays throws exception with no arguments ok 120 - addBioAssays throws exception with bad array ok 121 - setBioAssays accepts empty array ref ok 122 - getBioAssays throws exception with argument ok 123 - setBioAssays throws exception with no argument ok 124 - setBioAssays throws exception with too many argument ok 125 - setBioAssays accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 131 - descriptions set in new() ok 132 - setDescriptions returns correct value ok 133 - getDescriptions fetches correct value ok 134 - addDescriptions returns number of items in list ok 135 - addDescriptions adds correct value ok 136 - setDescriptions throws exception with non-array argument ok 137 - setDescriptions throws exception with bad argument array ok 138 - addDescriptions throws exception with no arguments ok 139 - addDescriptions throws exception with bad array ok 140 - setDescriptions accepts empty array ref ok 141 - getDescriptions throws exception with argument ok 142 - setDescriptions throws exception with no argument ok 143 - setDescriptions throws exception with too many argument ok 144 - setDescriptions accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - descriptions->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - descriptions->self() is a valid Bio::MAGE::Association::End ok 150 - bioAssayData set in new() ok 151 - setBioAssayData returns correct value ok 152 - getBioAssayData fetches correct value ok 153 - addBioAssayData returns number of items in list ok 154 - addBioAssayData adds correct value ok 155 - setBioAssayData throws exception with non-array argument ok 156 - setBioAssayData throws exception with bad argument array ok 157 - addBioAssayData throws exception with no arguments ok 158 - addBioAssayData throws exception with bad array ok 159 - setBioAssayData accepts empty array ref ok 160 - getBioAssayData throws exception with argument ok 161 - setBioAssayData throws exception with no argument ok 162 - setBioAssayData throws exception with too many argument ok 163 - setBioAssayData accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - bioAssayData->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioAssayData->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 170 - setSecurity returns value ok 171 - getSecurity fetches correct value ok 172 - setSecurity throws exception with bad argument ok 173 - getSecurity throws exception with argument ok 174 - setSecurity throws exception with no argument ok 175 - setSecurity throws exception with too many argument ok 176 - setSecurity accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - security->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - security->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 183 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok t/Experiment_package.t ........... 1..15 ok 1 - use Bio::MAGE::Experiment; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 4 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 5 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 6 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 7 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - experiment_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getExperiment_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getExperiment_list not empty ok t/ExperimentalFactor.t ........... 1..139 ok 1 - use Bio::MAGE::Experiment::ExperimentalFactor; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 69 - setCategory returns value ok 70 - getCategory fetches correct value ok 71 - setCategory throws exception with bad argument ok 72 - getCategory throws exception with argument ok 73 - setCategory throws exception with no argument ok 74 - setCategory throws exception with too many argument ok 75 - setCategory accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - category->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - category->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - factorValues set in new() ok 101 - setFactorValues returns correct value ok 102 - getFactorValues fetches correct value ok 103 - addFactorValues returns number of items in list ok 104 - addFactorValues adds correct value ok 105 - setFactorValues throws exception with non-array argument ok 106 - setFactorValues throws exception with bad argument array ok 107 - addFactorValues throws exception with no arguments ok 108 - addFactorValues throws exception with bad array ok 109 - setFactorValues accepts empty array ref ok 110 - getFactorValues throws exception with argument ok 111 - setFactorValues throws exception with no argument ok 112 - setFactorValues throws exception with too many argument ok 113 - setFactorValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - factorValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - factorValues->self() is a valid Bio::MAGE::Association::End ok 119 - annotations set in new() ok 120 - setAnnotations returns correct value ok 121 - getAnnotations fetches correct value ok 122 - addAnnotations returns number of items in list ok 123 - addAnnotations adds correct value ok 124 - setAnnotations throws exception with non-array argument ok 125 - setAnnotations throws exception with bad argument array ok 126 - addAnnotations throws exception with no arguments ok 127 - addAnnotations throws exception with bad array ok 128 - setAnnotations accepts empty array ref ok 129 - getAnnotations throws exception with argument ok 130 - setAnnotations throws exception with no argument ok 131 - setAnnotations throws exception with too many argument ok 132 - setAnnotations accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - annotations->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - annotations->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok t/ExperimentDesign.t ............. 1..172 ok 1 - use Bio::MAGE::Experiment::ExperimentDesign; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 6 - setReplicateDescription returns value ok 7 - getReplicateDescription fetches correct value ok 8 - setReplicateDescription throws exception with bad argument ok 9 - getReplicateDescription throws exception with argument ok 10 - setReplicateDescription throws exception with no argument ok 11 - setReplicateDescription throws exception with too many argument ok 12 - setReplicateDescription accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - replicateDescription->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - replicateDescription->self() is a valid Bio::MAGE::Association::End ok 18 - experimentalFactors set in new() ok 19 - setExperimentalFactors returns correct value ok 20 - getExperimentalFactors fetches correct value ok 21 - addExperimentalFactors returns number of items in list ok 22 - addExperimentalFactors adds correct value ok 23 - setExperimentalFactors throws exception with non-array argument ok 24 - setExperimentalFactors throws exception with bad argument array ok 25 - addExperimentalFactors throws exception with no arguments ok 26 - addExperimentalFactors throws exception with bad array ok 27 - setExperimentalFactors accepts empty array ref ok 28 - getExperimentalFactors throws exception with argument ok 29 - setExperimentalFactors throws exception with no argument ok 30 - setExperimentalFactors throws exception with too many argument ok 31 - setExperimentalFactors accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - experimentalFactors->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - experimentalFactors->self() is a valid Bio::MAGE::Association::End ok 37 - types set in new() ok 38 - setTypes returns correct value ok 39 - getTypes fetches correct value ok 40 - addTypes returns number of items in list ok 41 - addTypes adds correct value ok 42 - setTypes throws exception with non-array argument ok 43 - setTypes throws exception with bad argument array ok 44 - addTypes throws exception with no arguments ok 45 - addTypes throws exception with bad array ok 46 - setTypes accepts empty array ref ok 47 - getTypes throws exception with argument ok 48 - setTypes throws exception with no argument ok 49 - setTypes throws exception with too many argument ok 50 - setTypes accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - types->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 57 - setQualityControlDescription returns value ok 58 - getQualityControlDescription fetches correct value ok 59 - setQualityControlDescription throws exception with bad argument ok 60 - getQualityControlDescription throws exception with argument ok 61 - setQualityControlDescription throws exception with no argument ok 62 - setQualityControlDescription throws exception with too many argument ok 63 - setQualityControlDescription accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - qualityControlDescription->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - qualityControlDescription->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 70 - setNormalizationDescription returns value ok 71 - getNormalizationDescription fetches correct value ok 72 - setNormalizationDescription throws exception with bad argument ok 73 - getNormalizationDescription throws exception with argument ok 74 - setNormalizationDescription throws exception with no argument ok 75 - setNormalizationDescription throws exception with too many argument ok 76 - setNormalizationDescription accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - normalizationDescription->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - normalizationDescription->self() is a valid Bio::MAGE::Association::End ok 82 - auditTrail set in new() ok 83 - setAuditTrail returns correct value ok 84 - getAuditTrail fetches correct value ok 85 - addAuditTrail returns number of items in list ok 86 - addAuditTrail adds correct value ok 87 - setAuditTrail throws exception with non-array argument ok 88 - setAuditTrail throws exception with bad argument array ok 89 - addAuditTrail throws exception with no arguments ok 90 - addAuditTrail throws exception with bad array ok 91 - setAuditTrail accepts empty array ref ok 92 - getAuditTrail throws exception with argument ok 93 - setAuditTrail throws exception with no argument ok 94 - setAuditTrail throws exception with too many argument ok 95 - setAuditTrail accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - topLevelBioAssays set in new() ok 121 - setTopLevelBioAssays returns correct value ok 122 - getTopLevelBioAssays fetches correct value ok 123 - addTopLevelBioAssays returns number of items in list ok 124 - addTopLevelBioAssays adds correct value ok 125 - setTopLevelBioAssays throws exception with non-array argument ok 126 - setTopLevelBioAssays throws exception with bad argument array ok 127 - addTopLevelBioAssays throws exception with no arguments ok 128 - addTopLevelBioAssays throws exception with bad array ok 129 - setTopLevelBioAssays accepts empty array ref ok 130 - getTopLevelBioAssays throws exception with argument ok 131 - setTopLevelBioAssays throws exception with no argument ok 132 - setTopLevelBioAssays throws exception with too many argument ok 133 - setTopLevelBioAssays accepts undef ok 134 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - topLevelBioAssays->other() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - topLevelBioAssays->self() is a valid Bio::MAGE::Association::End ok 139 - descriptions set in new() ok 140 - setDescriptions returns correct value ok 141 - getDescriptions fetches correct value ok 142 - addDescriptions returns number of items in list ok 143 - addDescriptions adds correct value ok 144 - setDescriptions throws exception with non-array argument ok 145 - setDescriptions throws exception with bad argument array ok 146 - addDescriptions throws exception with no arguments ok 147 - addDescriptions throws exception with bad array ok 148 - setDescriptions accepts empty array ref ok 149 - getDescriptions throws exception with argument ok 150 - setDescriptions throws exception with no argument ok 151 - setDescriptions throws exception with too many argument ok 152 - setDescriptions accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - descriptions->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - descriptions->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 159 - setSecurity returns value ok 160 - getSecurity fetches correct value ok 161 - setSecurity throws exception with bad argument ok 162 - getSecurity throws exception with argument ok 163 - setSecurity throws exception with no argument ok 164 - setSecurity throws exception with too many argument ok 165 - setSecurity accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - security->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - security->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 172 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok t/Extendable.t ................... 1..77 ok 1 - use Bio::MAGE::Extendable; ok 2 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 25 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok 26 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 27 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok 28 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok 30 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 31 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok 32 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 33 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok 34 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 35 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok 38 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 39 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok 40 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 41 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok 42 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 43 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok 46 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 47 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok 48 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 49 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 51 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok 52 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 53 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok 54 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 55 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok 56 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok 58 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 59 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok 60 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 61 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 65 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok 66 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 67 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok 68 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 69 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 71 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok 72 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 73 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 75 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 77 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/ExternalReference.t ............ 1..49 ok 1 - use Bio::MAGE::Description::ExternalReference; ok 2 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 3 - package ok 4 - class_name ok 5 - exportedFromDB new ok 6 - exportedFromDB getter/setter ok 7 - exportedFromDB getter throws exception with argument ok 8 - exportedFromDB setter throws exception with no argument ok 9 - exportedFromDB setter throws exception with too many argument ok 10 - exportedFromDB setter accepts undef ok 11 - exportName new ok 12 - exportName getter/setter ok 13 - exportName getter throws exception with argument ok 14 - exportName setter throws exception with no argument ok 15 - exportName setter throws exception with too many argument ok 16 - exportName setter accepts undef ok 17 - exportedFromServer new ok 18 - exportedFromServer getter/setter ok 19 - exportedFromServer getter throws exception with argument ok 20 - exportedFromServer setter throws exception with no argument ok 21 - exportedFromServer setter throws exception with too many argument ok 22 - exportedFromServer setter accepts undef ok 23 - exportID new ok 24 - exportID getter/setter ok 25 - exportID getter throws exception with argument ok 26 - exportID setter throws exception with no argument ok 27 - exportID setter throws exception with too many argument ok 28 - exportID setter accepts undef ok 29 - propertySets set in new() ok 30 - setPropertySets returns correct value ok 31 - getPropertySets fetches correct value ok 32 - addPropertySets returns number of items in list ok 33 - addPropertySets adds correct value ok 34 - setPropertySets throws exception with non-array argument ok 35 - setPropertySets throws exception with bad argument array ok 36 - addPropertySets throws exception with no arguments ok 37 - addPropertySets throws exception with bad array ok 38 - setPropertySets accepts empty array ref ok 39 - getPropertySets throws exception with argument ok 40 - setPropertySets throws exception with no argument ok 41 - setPropertySets throws exception with too many argument ok 42 - setPropertySets accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->self() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 49 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok t/FactorValue.t .................. 1..127 ok 1 - use Bio::MAGE::Experiment::FactorValue; ok 2 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 18 - setExperimentalFactor returns value ok 19 - getExperimentalFactor fetches correct value ok 20 - setExperimentalFactor throws exception with bad argument ok 21 - getExperimentalFactor throws exception with argument ok 22 - setExperimentalFactor throws exception with no argument ok 23 - setExperimentalFactor throws exception with too many argument ok 24 - setExperimentalFactor accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - experimentalFactor->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - experimentalFactor->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 31 - setMeasurement returns value ok 32 - getMeasurement fetches correct value ok 33 - setMeasurement throws exception with bad argument ok 34 - getMeasurement throws exception with argument ok 35 - setMeasurement throws exception with no argument ok 36 - setMeasurement throws exception with too many argument ok 37 - setMeasurement accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - measurement->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - measurement->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setValue returns value ok 45 - getValue fetches correct value ok 46 - setValue throws exception with bad argument ok 47 - getValue throws exception with argument ok 48 - setValue throws exception with no argument ok 49 - setValue throws exception with too many argument ok 50 - setValue accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - value->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - value->self() is a valid Bio::MAGE::Association::End ok 56 - descriptions set in new() ok 57 - setDescriptions returns correct value ok 58 - getDescriptions fetches correct value ok 59 - addDescriptions returns number of items in list ok 60 - addDescriptions adds correct value ok 61 - setDescriptions throws exception with non-array argument ok 62 - setDescriptions throws exception with bad argument array ok 63 - addDescriptions throws exception with no arguments ok 64 - addDescriptions throws exception with bad array ok 65 - setDescriptions accepts empty array ref ok 66 - getDescriptions throws exception with argument ok 67 - setDescriptions throws exception with no argument ok 68 - setDescriptions throws exception with too many argument ok 69 - setDescriptions accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - descriptions->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - descriptions->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 76 - setSecurity returns value ok 77 - getSecurity fetches correct value ok 78 - setSecurity throws exception with bad argument ok 79 - getSecurity throws exception with argument ok 80 - setSecurity throws exception with no argument ok 81 - setSecurity throws exception with too many argument ok 82 - setSecurity accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - security->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - security->self() is a valid Bio::MAGE::Association::End ok 88 - auditTrail set in new() ok 89 - setAuditTrail returns correct value ok 90 - getAuditTrail fetches correct value ok 91 - addAuditTrail returns number of items in list ok 92 - addAuditTrail adds correct value ok 93 - setAuditTrail throws exception with non-array argument ok 94 - setAuditTrail throws exception with bad argument array ok 95 - addAuditTrail throws exception with no arguments ok 96 - addAuditTrail throws exception with bad array ok 97 - setAuditTrail accepts empty array ref ok 98 - getAuditTrail throws exception with argument ok 99 - setAuditTrail throws exception with no argument ok 100 - setAuditTrail throws exception with too many argument ok 101 - setAuditTrail accepts undef ok 102 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 107 - propertySets set in new() ok 108 - setPropertySets returns correct value ok 109 - getPropertySets fetches correct value ok 110 - addPropertySets returns number of items in list ok 111 - addPropertySets adds correct value ok 112 - setPropertySets throws exception with non-array argument ok 113 - setPropertySets throws exception with bad argument array ok 114 - addPropertySets throws exception with no arguments ok 115 - addPropertySets throws exception with bad array ok 116 - setPropertySets accepts empty array ref ok 117 - getPropertySets throws exception with argument ok 118 - setPropertySets throws exception with no argument ok 119 - setPropertySets throws exception with too many argument ok 120 - setPropertySets accepts undef ok 121 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->other() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - propertySets->self() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok t/Failed.t ....................... 1..171 ok 1 - use Bio::MAGE::QuantitationType::Failed; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Feature.t ...................... 1..191 ok 1 - use Bio::MAGE::DesignElement::Feature; ok 2 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 31 - setZone returns value ok 32 - getZone fetches correct value ok 33 - setZone throws exception with bad argument ok 34 - getZone throws exception with argument ok 35 - setZone throws exception with no argument ok 36 - setZone throws exception with too many argument ok 37 - setZone accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - zone->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - zone->self() is a valid Bio::MAGE::Association::End ok 43 - controlledFeatures set in new() ok 44 - setControlledFeatures returns correct value ok 45 - getControlledFeatures fetches correct value ok 46 - addControlledFeatures returns number of items in list ok 47 - addControlledFeatures adds correct value ok 48 - setControlledFeatures throws exception with non-array argument ok 49 - setControlledFeatures throws exception with bad argument array ok 50 - addControlledFeatures throws exception with no arguments ok 51 - addControlledFeatures throws exception with bad array ok 52 - setControlledFeatures accepts empty array ref ok 53 - getControlledFeatures throws exception with argument ok 54 - setControlledFeatures throws exception with no argument ok 55 - setControlledFeatures throws exception with too many argument ok 56 - setControlledFeatures accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - controlledFeatures->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - controlledFeatures->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 63 - setPosition returns value ok 64 - getPosition fetches correct value ok 65 - setPosition throws exception with bad argument ok 66 - getPosition throws exception with argument ok 67 - setPosition throws exception with no argument ok 68 - setPosition throws exception with too many argument ok 69 - setPosition accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - position->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - position->self() is a valid Bio::MAGE::Association::End ok 75 - auditTrail set in new() ok 76 - setAuditTrail returns correct value ok 77 - getAuditTrail fetches correct value ok 78 - addAuditTrail returns number of items in list ok 79 - addAuditTrail adds correct value ok 80 - setAuditTrail throws exception with non-array argument ok 81 - setAuditTrail throws exception with bad argument array ok 82 - addAuditTrail throws exception with no arguments ok 83 - addAuditTrail throws exception with bad array ok 84 - setAuditTrail accepts empty array ref ok 85 - getAuditTrail throws exception with argument ok 86 - setAuditTrail throws exception with no argument ok 87 - setAuditTrail throws exception with too many argument ok 88 - setAuditTrail accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 94 - propertySets set in new() ok 95 - setPropertySets returns correct value ok 96 - getPropertySets fetches correct value ok 97 - addPropertySets returns number of items in list ok 98 - addPropertySets adds correct value ok 99 - setPropertySets throws exception with non-array argument ok 100 - setPropertySets throws exception with bad argument array ok 101 - addPropertySets throws exception with no arguments ok 102 - addPropertySets throws exception with bad array ok 103 - setPropertySets accepts empty array ref ok 104 - getPropertySets throws exception with argument ok 105 - setPropertySets throws exception with no argument ok 106 - setPropertySets throws exception with too many argument ok 107 - setPropertySets accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - propertySets->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - propertySets->self() is a valid Bio::MAGE::Association::End ok 113 - descriptions set in new() ok 114 - setDescriptions returns correct value ok 115 - getDescriptions fetches correct value ok 116 - addDescriptions returns number of items in list ok 117 - addDescriptions adds correct value ok 118 - setDescriptions throws exception with non-array argument ok 119 - setDescriptions throws exception with bad argument array ok 120 - addDescriptions throws exception with no arguments ok 121 - addDescriptions throws exception with bad array ok 122 - setDescriptions accepts empty array ref ok 123 - getDescriptions throws exception with argument ok 124 - setDescriptions throws exception with no argument ok 125 - setDescriptions throws exception with too many argument ok 126 - setDescriptions accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - descriptions->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 146 - setFeatureGroup returns value ok 147 - getFeatureGroup fetches correct value ok 148 - setFeatureGroup throws exception with bad argument ok 149 - getFeatureGroup throws exception with argument ok 150 - setFeatureGroup throws exception with no argument ok 151 - setFeatureGroup throws exception with too many argument ok 152 - setFeatureGroup accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - featureGroup->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - featureGroup->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 159 - setFeatureLocation returns value ok 160 - getFeatureLocation fetches correct value ok 161 - setFeatureLocation throws exception with bad argument ok 162 - getFeatureLocation throws exception with argument ok 163 - setFeatureLocation throws exception with no argument ok 164 - setFeatureLocation throws exception with too many argument ok 165 - setFeatureLocation accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - featureLocation->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - featureLocation->self() is a valid Bio::MAGE::Association::End ok 171 - controlFeatures set in new() ok 172 - setControlFeatures returns correct value ok 173 - getControlFeatures fetches correct value ok 174 - addControlFeatures returns number of items in list ok 175 - addControlFeatures adds correct value ok 176 - setControlFeatures throws exception with non-array argument ok 177 - setControlFeatures throws exception with bad argument array ok 178 - addControlFeatures throws exception with no arguments ok 179 - addControlFeatures throws exception with bad array ok 180 - setControlFeatures accepts empty array ref ok 181 - getControlFeatures throws exception with argument ok 182 - setControlFeatures throws exception with no argument ok 183 - setControlFeatures throws exception with too many argument ok 184 - setControlFeatures accepts undef ok 185 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 186 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 187 - controlFeatures->other() is a valid Bio::MAGE::Association::End ok 188 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 189 - controlFeatures->self() is a valid Bio::MAGE::Association::End ok 190 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 191 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/FeatureDefect.t ................ 1..64 ok 1 - use Bio::MAGE::Array::FeatureDefect; ok 2 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 19 - setFeature returns value ok 20 - getFeature fetches correct value ok 21 - setFeature throws exception with bad argument ok 22 - getFeature throws exception with argument ok 23 - setFeature throws exception with no argument ok 24 - setFeature throws exception with too many argument ok 25 - setFeature accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - feature->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - feature->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok t/FeatureDimension.t ............. 1..107 ok 1 - use Bio::MAGE::BioAssayData::FeatureDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - containedFeatures set in new() ok 88 - setContainedFeatures returns correct value ok 89 - getContainedFeatures fetches correct value ok 90 - addContainedFeatures returns number of items in list ok 91 - addContainedFeatures adds correct value ok 92 - setContainedFeatures throws exception with non-array argument ok 93 - setContainedFeatures throws exception with bad argument array ok 94 - addContainedFeatures throws exception with no arguments ok 95 - addContainedFeatures throws exception with bad array ok 96 - setContainedFeatures accepts empty array ref ok 97 - getContainedFeatures throws exception with argument ok 98 - setContainedFeatures throws exception with no argument ok 99 - setContainedFeatures throws exception with too many argument ok 100 - setContainedFeatures accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - containedFeatures->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - containedFeatures->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/FeatureExtraction.t ............ 1..133 ok 1 - use Bio::MAGE::BioAssay::FeatureExtraction; ok 2 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 18 - setPhysicalBioAssaySource returns value ok 19 - getPhysicalBioAssaySource fetches correct value ok 20 - setPhysicalBioAssaySource throws exception with bad argument ok 21 - getPhysicalBioAssaySource throws exception with argument ok 22 - setPhysicalBioAssaySource throws exception with no argument ok 23 - setPhysicalBioAssaySource throws exception with too many argument ok 24 - setPhysicalBioAssaySource accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - physicalBioAssaySource->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - physicalBioAssaySource->self() is a valid Bio::MAGE::Association::End ok 30 - protocolApplications set in new() ok 31 - setProtocolApplications returns correct value ok 32 - getProtocolApplications fetches correct value ok 33 - addProtocolApplications returns number of items in list ok 34 - addProtocolApplications adds correct value ok 35 - setProtocolApplications throws exception with non-array argument ok 36 - setProtocolApplications throws exception with bad argument array ok 37 - addProtocolApplications throws exception with no arguments ok 38 - addProtocolApplications throws exception with bad array ok 39 - setProtocolApplications accepts empty array ref ok 40 - getProtocolApplications throws exception with argument ok 41 - setProtocolApplications throws exception with no argument ok 42 - setProtocolApplications throws exception with too many argument ok 43 - setProtocolApplications accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 50 - setMeasuredBioAssayTarget returns value ok 51 - getMeasuredBioAssayTarget fetches correct value ok 52 - setMeasuredBioAssayTarget throws exception with bad argument ok 53 - getMeasuredBioAssayTarget throws exception with argument ok 54 - setMeasuredBioAssayTarget throws exception with no argument ok 55 - setMeasuredBioAssayTarget throws exception with too many argument ok 56 - setMeasuredBioAssayTarget accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - measuredBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - measuredBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 133 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/FeatureGroup.t ................. 1..196 ok 1 - use Bio::MAGE::ArrayDesign::FeatureGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 3 - package ok 4 - class_name ok 5 - featureLength new ok 6 - featureLength getter/setter ok 7 - featureLength getter throws exception with argument ok 8 - featureLength setter throws exception with no argument ok 9 - featureLength setter throws exception with too many argument ok 10 - featureLength setter accepts undef ok 11 - featureWidth new ok 12 - featureWidth getter/setter ok 13 - featureWidth getter throws exception with argument ok 14 - featureWidth setter throws exception with no argument ok 15 - featureWidth setter throws exception with too many argument ok 16 - featureWidth setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - featureHeight new ok 24 - featureHeight getter/setter ok 25 - featureHeight getter throws exception with argument ok 26 - featureHeight setter throws exception with no argument ok 27 - featureHeight setter throws exception with too many argument ok 28 - featureHeight setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - types set in new() ok 36 - setTypes returns correct value ok 37 - getTypes fetches correct value ok 38 - addTypes returns number of items in list ok 39 - addTypes adds correct value ok 40 - setTypes throws exception with non-array argument ok 41 - setTypes throws exception with bad argument array ok 42 - addTypes throws exception with no arguments ok 43 - addTypes throws exception with bad array ok 44 - setTypes accepts empty array ref ok 45 - getTypes throws exception with argument ok 46 - setTypes throws exception with no argument ok 47 - setTypes throws exception with too many argument ok 48 - setTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - types->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->self() is a valid Bio::MAGE::Association::End ok 54 - features set in new() ok 55 - setFeatures returns correct value ok 56 - getFeatures fetches correct value ok 57 - addFeatures returns number of items in list ok 58 - addFeatures adds correct value ok 59 - setFeatures throws exception with non-array argument ok 60 - setFeatures throws exception with bad argument array ok 61 - addFeatures throws exception with no arguments ok 62 - addFeatures throws exception with bad array ok 63 - setFeatures accepts empty array ref ok 64 - getFeatures throws exception with argument ok 65 - setFeatures throws exception with no argument ok 66 - setFeatures throws exception with too many argument ok 67 - setFeatures accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - features->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - features->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 74 - setFeatureShape returns value ok 75 - getFeatureShape fetches correct value ok 76 - setFeatureShape throws exception with bad argument ok 77 - getFeatureShape throws exception with argument ok 78 - setFeatureShape throws exception with no argument ok 79 - setFeatureShape throws exception with too many argument ok 80 - setFeatureShape accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureShape->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureShape->self() is a valid Bio::MAGE::Association::End ok 86 - auditTrail set in new() ok 87 - setAuditTrail returns correct value ok 88 - getAuditTrail fetches correct value ok 89 - addAuditTrail returns number of items in list ok 90 - addAuditTrail adds correct value ok 91 - setAuditTrail throws exception with non-array argument ok 92 - setAuditTrail throws exception with bad argument array ok 93 - addAuditTrail throws exception with no arguments ok 94 - addAuditTrail throws exception with bad array ok 95 - setAuditTrail accepts empty array ref ok 96 - getAuditTrail throws exception with argument ok 97 - setAuditTrail throws exception with no argument ok 98 - setAuditTrail throws exception with too many argument ok 99 - setAuditTrail accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 106 - setTechnologyType returns value ok 107 - getTechnologyType fetches correct value ok 108 - setTechnologyType throws exception with bad argument ok 109 - getTechnologyType throws exception with argument ok 110 - setTechnologyType throws exception with no argument ok 111 - setTechnologyType throws exception with too many argument ok 112 - setTechnologyType accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - technologyType->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - technologyType->self() is a valid Bio::MAGE::Association::End ok 118 - propertySets set in new() ok 119 - setPropertySets returns correct value ok 120 - getPropertySets fetches correct value ok 121 - addPropertySets returns number of items in list ok 122 - addPropertySets adds correct value ok 123 - setPropertySets throws exception with non-array argument ok 124 - setPropertySets throws exception with bad argument array ok 125 - addPropertySets throws exception with no arguments ok 126 - addPropertySets throws exception with bad array ok 127 - setPropertySets accepts empty array ref ok 128 - getPropertySets throws exception with argument ok 129 - setPropertySets throws exception with no argument ok 130 - setPropertySets throws exception with too many argument ok 131 - setPropertySets accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - propertySets->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - propertySets->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 138 - setSpecies returns value ok 139 - getSpecies fetches correct value ok 140 - setSpecies throws exception with bad argument ok 141 - getSpecies throws exception with argument ok 142 - setSpecies throws exception with no argument ok 143 - setSpecies throws exception with too many argument ok 144 - setSpecies accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - species->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - species->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 151 - setDistanceUnit returns value ok 152 - getDistanceUnit fetches correct value ok 153 - setDistanceUnit throws exception with bad argument ok 154 - getDistanceUnit throws exception with argument ok 155 - setDistanceUnit throws exception with no argument ok 156 - setDistanceUnit throws exception with too many argument ok 157 - setDistanceUnit accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 163 - descriptions set in new() ok 164 - setDescriptions returns correct value ok 165 - getDescriptions fetches correct value ok 166 - addDescriptions returns number of items in list ok 167 - addDescriptions adds correct value ok 168 - setDescriptions throws exception with non-array argument ok 169 - setDescriptions throws exception with bad argument array ok 170 - addDescriptions throws exception with no arguments ok 171 - addDescriptions throws exception with bad array ok 172 - setDescriptions accepts empty array ref ok 173 - getDescriptions throws exception with argument ok 174 - setDescriptions throws exception with no argument ok 175 - setDescriptions throws exception with too many argument ok 176 - setDescriptions accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - descriptions->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - descriptions->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 183 - setSecurity returns value ok 184 - getSecurity fetches correct value ok 185 - setSecurity throws exception with bad argument ok 186 - getSecurity throws exception with argument ok 187 - setSecurity throws exception with no argument ok 188 - setSecurity throws exception with too many argument ok 189 - setSecurity accepts undef ok 190 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 191 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 192 - security->other() is a valid Bio::MAGE::Association::End ok 193 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 194 - security->self() is a valid Bio::MAGE::Association::End ok 195 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 196 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/FeatureInformation.t ........... 1..57 ok 1 - use Bio::MAGE::DesignElement::FeatureInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 6 - setFeature returns value ok 7 - getFeature fetches correct value ok 8 - setFeature throws exception with bad argument ok 9 - getFeature throws exception with argument ok 10 - setFeature throws exception with no argument ok 11 - setFeature throws exception with too many argument ok 12 - setFeature accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - feature->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - feature->self() is a valid Bio::MAGE::Association::End ok 18 - propertySets set in new() ok 19 - setPropertySets returns correct value ok 20 - getPropertySets fetches correct value ok 21 - addPropertySets returns number of items in list ok 22 - addPropertySets adds correct value ok 23 - setPropertySets throws exception with non-array argument ok 24 - setPropertySets throws exception with bad argument array ok 25 - addPropertySets throws exception with no arguments ok 26 - addPropertySets throws exception with bad array ok 27 - setPropertySets accepts empty array ref ok 28 - getPropertySets throws exception with argument ok 29 - setPropertySets throws exception with no argument ok 30 - setPropertySets throws exception with too many argument ok 31 - setPropertySets accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - propertySets->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - propertySets->self() is a valid Bio::MAGE::Association::End ok 37 - mismatchInformation set in new() ok 38 - setMismatchInformation returns correct value ok 39 - getMismatchInformation fetches correct value ok 40 - addMismatchInformation returns number of items in list ok 41 - addMismatchInformation adds correct value ok 42 - setMismatchInformation throws exception with non-array argument ok 43 - setMismatchInformation throws exception with bad argument array ok 44 - addMismatchInformation throws exception with no arguments ok 45 - addMismatchInformation throws exception with bad array ok 46 - setMismatchInformation accepts empty array ref ok 47 - getMismatchInformation throws exception with argument ok 48 - setMismatchInformation throws exception with no argument ok 49 - setMismatchInformation throws exception with too many argument ok 50 - setMismatchInformation accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok t/FeatureLocation.t .............. 1..37 ok 1 - use Bio::MAGE::DesignElement::FeatureLocation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 3 - package ok 4 - class_name ok 5 - row new ok 6 - row getter/setter ok 7 - row getter throws exception with argument ok 8 - row setter throws exception with no argument ok 9 - row setter throws exception with too many argument ok 10 - row setter accepts undef ok 11 - column new ok 12 - column getter/setter ok 13 - column getter throws exception with argument ok 14 - column setter throws exception with no argument ok 15 - column setter throws exception with too many argument ok 16 - column setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 37 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok t/FeatureReporterMap.t ........... 1..139 ok 1 - use Bio::MAGE::DesignElement::FeatureReporterMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 107 - setReporter returns value ok 108 - getReporter fetches correct value ok 109 - setReporter throws exception with bad argument ok 110 - getReporter throws exception with argument ok 111 - setReporter throws exception with no argument ok 112 - setReporter throws exception with too many argument ok 113 - setReporter accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - reporter->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - reporter->self() is a valid Bio::MAGE::Association::End ok 119 - featureInformationSources set in new() ok 120 - setFeatureInformationSources returns correct value ok 121 - getFeatureInformationSources fetches correct value ok 122 - addFeatureInformationSources returns number of items in list ok 123 - addFeatureInformationSources adds correct value ok 124 - setFeatureInformationSources throws exception with non-array argument ok 125 - setFeatureInformationSources throws exception with bad argument array ok 126 - addFeatureInformationSources throws exception with no arguments ok 127 - addFeatureInformationSources throws exception with bad array ok 128 - setFeatureInformationSources accepts empty array ref ok 129 - getFeatureInformationSources throws exception with argument ok 130 - setFeatureInformationSources throws exception with no argument ok 131 - setFeatureInformationSources throws exception with too many argument ok 132 - setFeatureInformationSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - featureInformationSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - featureInformationSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/Fiducial.t ..................... 1..115 ok 1 - use Bio::MAGE::Array::Fiducial; ok 2 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 6 - setDistanceUnit returns value ok 7 - getDistanceUnit fetches correct value ok 8 - setDistanceUnit throws exception with bad argument ok 9 - getDistanceUnit throws exception with argument ok 10 - setDistanceUnit throws exception with no argument ok 11 - setDistanceUnit throws exception with too many argument ok 12 - setDistanceUnit accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 18 - descriptions set in new() ok 19 - setDescriptions returns correct value ok 20 - getDescriptions fetches correct value ok 21 - addDescriptions returns number of items in list ok 22 - addDescriptions adds correct value ok 23 - setDescriptions throws exception with non-array argument ok 24 - setDescriptions throws exception with bad argument array ok 25 - addDescriptions throws exception with no arguments ok 26 - addDescriptions throws exception with bad array ok 27 - setDescriptions accepts empty array ref ok 28 - getDescriptions throws exception with argument ok 29 - setDescriptions throws exception with no argument ok 30 - setDescriptions throws exception with too many argument ok 31 - setDescriptions accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - descriptions->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - descriptions->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 38 - setPosition returns value ok 39 - getPosition fetches correct value ok 40 - setPosition throws exception with bad argument ok 41 - getPosition throws exception with argument ok 42 - setPosition throws exception with no argument ok 43 - setPosition throws exception with too many argument ok 44 - setPosition accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - position->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - position->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 102 - setFiducialType returns value ok 103 - getFiducialType fetches correct value ok 104 - setFiducialType throws exception with bad argument ok 105 - getFiducialType throws exception with argument ok 106 - setFiducialType throws exception with no argument ok 107 - setFiducialType throws exception with too many argument ok 108 - setFiducialType accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - fiducialType->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - fiducialType->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok t/Hardware.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Hardware; ok 2 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 3 - package ok 4 - class_name ok 5 - make new ok 6 - make getter/setter ok 7 - make getter throws exception with argument ok 8 - make setter throws exception with no argument ok 9 - make setter throws exception with too many argument ok 10 - make setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - model new ok 24 - model getter/setter ok 25 - model getter throws exception with argument ok 26 - model setter throws exception with no argument ok 27 - model setter throws exception with too many argument ok 28 - model setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwareManufacturers set in new() ok 93 - setHardwareManufacturers returns correct value ok 94 - getHardwareManufacturers fetches correct value ok 95 - addHardwareManufacturers returns number of items in list ok 96 - addHardwareManufacturers adds correct value ok 97 - setHardwareManufacturers throws exception with non-array argument ok 98 - setHardwareManufacturers throws exception with bad argument array ok 99 - addHardwareManufacturers throws exception with no arguments ok 100 - addHardwareManufacturers throws exception with bad array ok 101 - setHardwareManufacturers accepts empty array ref ok 102 - getHardwareManufacturers throws exception with argument ok 103 - setHardwareManufacturers throws exception with no argument ok 104 - setHardwareManufacturers throws exception with too many argument ok 105 - setHardwareManufacturers accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/HardwareApplication.t .......... 1..114 ok 1 - use Bio::MAGE::Protocol::HardwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 3 - package ok 4 - class_name ok 5 - serialNumber new ok 6 - serialNumber getter/setter ok 7 - serialNumber getter throws exception with argument ok 8 - serialNumber setter throws exception with no argument ok 9 - serialNumber setter throws exception with too many argument ok 10 - serialNumber setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 12 - setHardware returns value ok 13 - getHardware fetches correct value ok 14 - setHardware throws exception with bad argument ok 15 - getHardware throws exception with argument ok 16 - setHardware throws exception with no argument ok 17 - setHardware throws exception with too many argument ok 18 - setHardware accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - hardware->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - hardware->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - auditTrail set in new() ok 57 - setAuditTrail returns correct value ok 58 - getAuditTrail fetches correct value ok 59 - addAuditTrail returns number of items in list ok 60 - addAuditTrail adds correct value ok 61 - setAuditTrail throws exception with non-array argument ok 62 - setAuditTrail throws exception with bad argument array ok 63 - addAuditTrail throws exception with no arguments ok 64 - addAuditTrail throws exception with bad array ok 65 - setAuditTrail accepts empty array ref ok 66 - getAuditTrail throws exception with argument ok 67 - setAuditTrail throws exception with no argument ok 68 - setAuditTrail throws exception with too many argument ok 69 - setAuditTrail accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 75 - propertySets set in new() ok 76 - setPropertySets returns correct value ok 77 - getPropertySets fetches correct value ok 78 - addPropertySets returns number of items in list ok 79 - addPropertySets adds correct value ok 80 - setPropertySets throws exception with non-array argument ok 81 - setPropertySets throws exception with bad argument array ok 82 - addPropertySets throws exception with no arguments ok 83 - addPropertySets throws exception with bad array ok 84 - setPropertySets accepts empty array ref ok 85 - getPropertySets throws exception with argument ok 86 - setPropertySets throws exception with no argument ok 87 - setPropertySets throws exception with too many argument ok 88 - setPropertySets accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - propertySets->self() is a valid Bio::MAGE::Association::End ok 94 - parameterValues set in new() ok 95 - setParameterValues returns correct value ok 96 - getParameterValues fetches correct value ok 97 - addParameterValues returns number of items in list ok 98 - addParameterValues adds correct value ok 99 - setParameterValues throws exception with non-array argument ok 100 - setParameterValues throws exception with bad argument array ok 101 - addParameterValues throws exception with no arguments ok 102 - addParameterValues throws exception with bad array ok 103 - setParameterValues accepts empty array ref ok 104 - getParameterValues throws exception with argument ok 105 - setParameterValues throws exception with no argument ok 106 - setParameterValues throws exception with too many argument ok 107 - setParameterValues accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 114 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/HigherLevelAnalysis_package.t .. 1..15 ok 1 - use Bio::MAGE::HigherLevelAnalysis; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 4 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 5 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 6 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 7 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - bioassaydatacluster_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioAssayDataCluster_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioAssayDataCluster_list not empty ok t/Hybridization.t ................ 1..152 ok 1 - use Bio::MAGE::BioAssay::Hybridization; ok 2 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok t/Identifiable.t ................. 1..146 ok 1 - use Bio::MAGE::Identifiable; ok 2 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 88 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok 89 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 90 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok 91 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 92 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok 93 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 94 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok 95 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 96 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok 97 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 98 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok 99 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok 101 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok 103 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 104 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 108 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok 109 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 110 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 112 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok 113 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 114 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok 115 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 116 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok 117 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 118 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 120 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok 121 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 122 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok 123 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 124 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok 125 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 126 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 128 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok 129 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 130 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok 131 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 132 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok 133 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 134 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok 135 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 136 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 138 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 140 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok 141 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 142 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok 143 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 144 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok t/Image.t ........................ 1..126 ok 1 - use Bio::MAGE::BioAssay::Image; ok 2 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - channels set in new() ok 24 - setChannels returns correct value ok 25 - getChannels fetches correct value ok 26 - addChannels returns number of items in list ok 27 - addChannels adds correct value ok 28 - setChannels throws exception with non-array argument ok 29 - setChannels throws exception with bad argument array ok 30 - addChannels throws exception with no arguments ok 31 - addChannels throws exception with bad array ok 32 - setChannels accepts empty array ref ok 33 - getChannels throws exception with argument ok 34 - setChannels throws exception with no argument ok 35 - setChannels throws exception with too many argument ok 36 - setChannels accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - channels->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - channels->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setFormat returns value ok 44 - getFormat fetches correct value ok 45 - setFormat throws exception with bad argument ok 46 - getFormat throws exception with argument ok 47 - setFormat throws exception with no argument ok 48 - setFormat throws exception with too many argument ok 49 - setFormat accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - format->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - format->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok t/ImageAcquisition.t ............. 1..152 ok 1 - use Bio::MAGE::BioAssay::ImageAcquisition; ok 2 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - images set in new() ok 18 - setImages returns correct value ok 19 - getImages fetches correct value ok 20 - addImages returns number of items in list ok 21 - addImages adds correct value ok 22 - setImages throws exception with non-array argument ok 23 - setImages throws exception with bad argument array ok 24 - addImages throws exception with no arguments ok 25 - addImages throws exception with bad array ok 26 - setImages accepts empty array ref ok 27 - getImages throws exception with argument ok 28 - setImages throws exception with no argument ok 29 - setImages throws exception with too many argument ok 30 - setImages accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - images->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - images->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 94 - setTarget returns value ok 95 - getTarget fetches correct value ok 96 - setTarget throws exception with bad argument ok 97 - getTarget throws exception with argument ok 98 - setTarget throws exception with no argument ok 99 - setTarget throws exception with too many argument ok 100 - setTarget accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - target->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - target->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 107 - setPhysicalBioAssay returns value ok 108 - getPhysicalBioAssay fetches correct value ok 109 - setPhysicalBioAssay throws exception with bad argument ok 110 - getPhysicalBioAssay throws exception with argument ok 111 - setPhysicalBioAssay throws exception with no argument ok 112 - setPhysicalBioAssay throws exception with too many argument ok 113 - setPhysicalBioAssay accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 119 - descriptions set in new() ok 120 - setDescriptions returns correct value ok 121 - getDescriptions fetches correct value ok 122 - addDescriptions returns number of items in list ok 123 - addDescriptions adds correct value ok 124 - setDescriptions throws exception with non-array argument ok 125 - setDescriptions throws exception with bad argument array ok 126 - addDescriptions throws exception with no arguments ok 127 - addDescriptions throws exception with bad array ok 128 - setDescriptions accepts empty array ref ok 129 - getDescriptions throws exception with argument ok 130 - setDescriptions throws exception with no argument ok 131 - setDescriptions throws exception with too many argument ok 132 - setDescriptions accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - descriptions->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - descriptions->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 139 - setSecurity returns value ok 140 - getSecurity fetches correct value ok 141 - setSecurity throws exception with bad argument ok 142 - getSecurity throws exception with argument ok 143 - setSecurity throws exception with no argument ok 144 - setSecurity throws exception with too many argument ok 145 - setSecurity accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - security->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - security->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 152 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok t/LabeledExtract.t ............... 1..177 ok 1 - use Bio::MAGE::BioMaterial::LabeledExtract; ok 2 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - labels set in new() ok 145 - setLabels returns correct value ok 146 - getLabels fetches correct value ok 147 - addLabels returns number of items in list ok 148 - addLabels adds correct value ok 149 - setLabels throws exception with non-array argument ok 150 - setLabels throws exception with bad argument array ok 151 - addLabels throws exception with no arguments ok 152 - addLabels throws exception with bad array ok 153 - setLabels accepts empty array ref ok 154 - getLabels throws exception with argument ok 155 - setLabels throws exception with no argument ok 156 - setLabels throws exception with too many argument ok 157 - setLabels accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - labels->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - labels->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/MAGE_package.t ................. 1..29 ok 1 - use Bio::MAGE; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 4 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 5 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 6 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 7 - An object of class 'Bio::MAGE' isa 'Bio::MAGE' ok 8 - tagname ok 9 - package count ok 10 ok 11 - identifiers ok 12 - objects ok 13 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 14 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 15 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 16 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 17 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 18 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 19 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 20 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 21 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 22 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 23 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 24 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 25 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 26 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 27 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 28 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 29 - package list count ok t/ManufactureLIMS.t .............. 1..123 ok 1 - use Bio::MAGE::Array::ManufactureLIMS; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 3 - package ok 4 - class_name ok 5 - quality new ok 6 - quality getter/setter ok 7 - quality getter throws exception with argument ok 8 - quality setter throws exception with no argument ok 9 - quality setter throws exception with too many argument ok 10 - quality setter accepts undef ok 11 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 12 - setFeature returns value ok 13 - getFeature fetches correct value ok 14 - setFeature throws exception with bad argument ok 15 - getFeature throws exception with argument ok 16 - setFeature throws exception with no argument ok 17 - setFeature throws exception with too many argument ok 18 - setFeature accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - feature->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - feature->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 25 - setIdentifierLIMS returns value ok 26 - getIdentifierLIMS fetches correct value ok 27 - setIdentifierLIMS throws exception with bad argument ok 28 - getIdentifierLIMS throws exception with argument ok 29 - setIdentifierLIMS throws exception with no argument ok 30 - setIdentifierLIMS throws exception with too many argument ok 31 - setIdentifierLIMS accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 38 - setBioMaterial returns value ok 39 - getBioMaterial fetches correct value ok 40 - setBioMaterial throws exception with bad argument ok 41 - getBioMaterial throws exception with argument ok 42 - setBioMaterial throws exception with no argument ok 43 - setBioMaterial throws exception with too many argument ok 44 - setBioMaterial accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 50 - descriptions set in new() ok 51 - setDescriptions returns correct value ok 52 - getDescriptions fetches correct value ok 53 - addDescriptions returns number of items in list ok 54 - addDescriptions adds correct value ok 55 - setDescriptions throws exception with non-array argument ok 56 - setDescriptions throws exception with bad argument array ok 57 - addDescriptions throws exception with no arguments ok 58 - addDescriptions throws exception with bad array ok 59 - setDescriptions accepts empty array ref ok 60 - getDescriptions throws exception with argument ok 61 - setDescriptions throws exception with no argument ok 62 - setDescriptions throws exception with too many argument ok 63 - setDescriptions accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - descriptions->self() is a valid Bio::MAGE::Association::End ok 69 - auditTrail set in new() ok 70 - setAuditTrail returns correct value ok 71 - getAuditTrail fetches correct value ok 72 - addAuditTrail returns number of items in list ok 73 - addAuditTrail adds correct value ok 74 - setAuditTrail throws exception with non-array argument ok 75 - setAuditTrail throws exception with bad argument array ok 76 - addAuditTrail throws exception with no arguments ok 77 - addAuditTrail throws exception with bad array ok 78 - setAuditTrail accepts empty array ref ok 79 - getAuditTrail throws exception with argument ok 80 - setAuditTrail throws exception with no argument ok 81 - setAuditTrail throws exception with too many argument ok 82 - setAuditTrail accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 89 - setSecurity returns value ok 90 - getSecurity fetches correct value ok 91 - setSecurity throws exception with bad argument ok 92 - getSecurity throws exception with argument ok 93 - setSecurity throws exception with no argument ok 94 - setSecurity throws exception with too many argument ok 95 - setSecurity accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - security->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - security->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 121 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 122 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 123 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok t/ManufactureLIMSBiomaterial.t ... 1..139 ok 1 - use Bio::MAGE::Array::ManufactureLIMSBiomaterial; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 3 - package ok 4 - class_name ok 5 - bioMaterialPlateCol new ok 6 - bioMaterialPlateCol getter/setter ok 7 - bioMaterialPlateCol getter throws exception with argument ok 8 - bioMaterialPlateCol setter throws exception with no argument ok 9 - bioMaterialPlateCol setter throws exception with too many argument ok 10 - bioMaterialPlateCol setter accepts undef ok 11 - bioMaterialPlateRow new ok 12 - bioMaterialPlateRow getter/setter ok 13 - bioMaterialPlateRow getter throws exception with argument ok 14 - bioMaterialPlateRow setter throws exception with no argument ok 15 - bioMaterialPlateRow setter throws exception with too many argument ok 16 - bioMaterialPlateRow setter accepts undef ok 17 - bioMaterialPlateIdentifier new ok 18 - bioMaterialPlateIdentifier getter/setter ok 19 - bioMaterialPlateIdentifier getter throws exception with argument ok 20 - bioMaterialPlateIdentifier setter throws exception with no argument ok 21 - bioMaterialPlateIdentifier setter throws exception with too many argument ok 22 - bioMaterialPlateIdentifier setter accepts undef ok 23 - quality new ok 24 - quality getter/setter ok 25 - quality getter throws exception with argument ok 26 - quality setter throws exception with no argument ok 27 - quality setter throws exception with too many argument ok 28 - quality setter accepts undef ok 29 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 30 - setFeature returns value ok 31 - getFeature fetches correct value ok 32 - setFeature throws exception with bad argument ok 33 - getFeature throws exception with argument ok 34 - setFeature throws exception with no argument ok 35 - setFeature throws exception with too many argument ok 36 - setFeature accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - feature->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - feature->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setIdentifierLIMS returns value ok 44 - getIdentifierLIMS fetches correct value ok 45 - setIdentifierLIMS throws exception with bad argument ok 46 - getIdentifierLIMS throws exception with argument ok 47 - setIdentifierLIMS throws exception with no argument ok 48 - setIdentifierLIMS throws exception with too many argument ok 49 - setIdentifierLIMS accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 75 - setBioMaterial returns value ok 76 - getBioMaterial fetches correct value ok 77 - setBioMaterial throws exception with bad argument ok 78 - getBioMaterial throws exception with argument ok 79 - setBioMaterial throws exception with no argument ok 80 - setBioMaterial throws exception with too many argument ok 81 - setBioMaterial accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 139 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok t/Map.t .......................... 1..113 ok 1 - use Bio::MAGE::BioEvent::Map; ok 2 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok 108 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 109 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok 110 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok 112 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 113 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/MassUnit.t ..................... 1..46 ok 1 - use Bio::MAGE::Measurement::MassUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts kg ok 19 - unitNameCV accepts g ok 20 - unitNameCV accepts mg ok 21 - unitNameCV accepts ug ok 22 - unitNameCV accepts ng ok 23 - unitNameCV accepts pg ok 24 - unitNameCV accepts fg ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/MeasuredBioAssay.t ............. 1..158 ok 1 - use Bio::MAGE::BioAssay::MeasuredBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 94 - setFeatureExtraction returns value ok 95 - getFeatureExtraction fetches correct value ok 96 - setFeatureExtraction throws exception with bad argument ok 97 - getFeatureExtraction throws exception with argument ok 98 - setFeatureExtraction throws exception with no argument ok 99 - setFeatureExtraction throws exception with too many argument ok 100 - setFeatureExtraction accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - featureExtraction->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - featureExtraction->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - measuredBioAssayData set in new() ok 139 - setMeasuredBioAssayData returns correct value ok 140 - getMeasuredBioAssayData fetches correct value ok 141 - addMeasuredBioAssayData returns number of items in list ok 142 - addMeasuredBioAssayData adds correct value ok 143 - setMeasuredBioAssayData throws exception with non-array argument ok 144 - setMeasuredBioAssayData throws exception with bad argument array ok 145 - addMeasuredBioAssayData throws exception with no arguments ok 146 - addMeasuredBioAssayData throws exception with bad array ok 147 - setMeasuredBioAssayData accepts empty array ref ok 148 - getMeasuredBioAssayData throws exception with argument ok 149 - setMeasuredBioAssayData throws exception with no argument ok 150 - setMeasuredBioAssayData throws exception with too many argument ok 151 - setMeasuredBioAssayData accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - measuredBioAssayData->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - measuredBioAssayData->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 158 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/MeasuredBioAssayData.t ......... 1..159 ok 1 - use Bio::MAGE::BioAssayData::MeasuredBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 120 - setQuantitationTypeDimension returns value ok 121 - getQuantitationTypeDimension fetches correct value ok 122 - setQuantitationTypeDimension throws exception with bad argument ok 123 - getQuantitationTypeDimension throws exception with argument ok 124 - setQuantitationTypeDimension throws exception with no argument ok 125 - setQuantitationTypeDimension throws exception with too many argument ok 126 - setQuantitationTypeDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 146 - setBioDataValues returns value ok 147 - getBioDataValues fetches correct value ok 148 - setBioDataValues throws exception with bad argument ok 149 - getBioDataValues throws exception with argument ok 150 - setBioDataValues throws exception with no argument ok 151 - setBioDataValues throws exception with too many argument ok 152 - setBioDataValues accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/MeasuredSignal.t ............... 1..171 ok 1 - use Bio::MAGE::QuantitationType::MeasuredSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Measurement.t .................. 1..74 ok 1 - use Bio::MAGE::Measurement::Measurement; ok 2 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - otherKind new ok 12 - otherKind getter/setter ok 13 - otherKind getter throws exception with argument ok 14 - otherKind setter throws exception with no argument ok 15 - otherKind setter throws exception with too many argument ok 16 - otherKind setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - type setter throws exception with bad argument ok 24 - type accepts absolute ok 25 - type accepts change ok 26 - kindCV new ok 27 - kindCV getter/setter ok 28 - kindCV getter throws exception with argument ok 29 - kindCV setter throws exception with no argument ok 30 - kindCV setter throws exception with too many argument ok 31 - kindCV setter accepts undef ok 32 - kindCV setter throws exception with bad argument ok 33 - kindCV accepts time ok 34 - kindCV accepts distance ok 35 - kindCV accepts temperature ok 36 - kindCV accepts quantity ok 37 - kindCV accepts mass ok 38 - kindCV accepts volume ok 39 - kindCV accepts concentration ok 40 - kindCV accepts other ok 41 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - setUnit returns value ok 43 - getUnit fetches correct value ok 44 - setUnit throws exception with bad argument ok 45 - getUnit throws exception with argument ok 46 - setUnit throws exception with no argument ok 47 - setUnit throws exception with too many argument ok 48 - setUnit accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - unit->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - unit->self() is a valid Bio::MAGE::Association::End ok 54 - propertySets set in new() ok 55 - setPropertySets returns correct value ok 56 - getPropertySets fetches correct value ok 57 - addPropertySets returns number of items in list ok 58 - addPropertySets adds correct value ok 59 - setPropertySets throws exception with non-array argument ok 60 - setPropertySets throws exception with bad argument array ok 61 - addPropertySets throws exception with no arguments ok 62 - addPropertySets throws exception with bad array ok 63 - setPropertySets accepts empty array ref ok 64 - getPropertySets throws exception with argument ok 65 - setPropertySets throws exception with no argument ok 66 - setPropertySets throws exception with too many argument ok 67 - setPropertySets accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - propertySets->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok t/Measurement_package.t .......... 1..14 ok 1 - use Bio::MAGE::Measurement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 4 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 5 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 6 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 7 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 8 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 9 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 10 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 11 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 12 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 13 - tagname ok 14 - xml_lists ok t/MismatchInformation.t .......... 1..43 ok 1 - use Bio::MAGE::DesignElement::MismatchInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 3 - package ok 4 - class_name ok 5 - replacedLength new ok 6 - replacedLength getter/setter ok 7 - replacedLength getter throws exception with argument ok 8 - replacedLength setter throws exception with no argument ok 9 - replacedLength setter throws exception with too many argument ok 10 - replacedLength setter accepts undef ok 11 - startCoord new ok 12 - startCoord getter/setter ok 13 - startCoord getter throws exception with argument ok 14 - startCoord setter throws exception with no argument ok 15 - startCoord setter throws exception with too many argument ok 16 - startCoord setter accepts undef ok 17 - newSequence new ok 18 - newSequence getter/setter ok 19 - newSequence getter throws exception with argument ok 20 - newSequence setter throws exception with no argument ok 21 - newSequence setter throws exception with too many argument ok 22 - newSequence setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 43 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok t/NameValueType.t ................ 1..41 ok 1 - use Bio::MAGE::NameValueType; ok 2 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok t/Node.t ......................... 1..133 ok 1 - use Bio::MAGE::HigherLevelAnalysis::Node; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 3 - package ok 4 - class_name ok 5 - nodeValue set in new() ok 6 - setNodeValue returns correct value ok 7 - getNodeValue fetches correct value ok 8 - addNodeValue returns number of items in list ok 9 - addNodeValue adds correct value ok 10 - setNodeValue throws exception with non-array argument ok 11 - setNodeValue throws exception with bad argument array ok 12 - addNodeValue throws exception with no arguments ok 13 - addNodeValue throws exception with bad array ok 14 - setNodeValue accepts empty array ref ok 15 - getNodeValue throws exception with argument ok 16 - setNodeValue throws exception with no argument ok 17 - setNodeValue throws exception with too many argument ok 18 - setNodeValue accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - nodeValue->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - nodeValue->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 63 - setSecurity returns value ok 64 - getSecurity fetches correct value ok 65 - setSecurity throws exception with bad argument ok 66 - getSecurity throws exception with argument ok 67 - setSecurity throws exception with no argument ok 68 - setSecurity throws exception with too many argument ok 69 - setSecurity accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - security->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - security->self() is a valid Bio::MAGE::Association::End ok 75 - nodes set in new() ok 76 - setNodes returns correct value ok 77 - getNodes fetches correct value ok 78 - addNodes returns number of items in list ok 79 - addNodes adds correct value ok 80 - setNodes throws exception with non-array argument ok 81 - setNodes throws exception with bad argument array ok 82 - addNodes throws exception with no arguments ok 83 - addNodes throws exception with bad array ok 84 - setNodes accepts empty array ref ok 85 - getNodes throws exception with argument ok 86 - setNodes throws exception with no argument ok 87 - setNodes throws exception with too many argument ok 88 - setNodes accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - nodes->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - nodes->self() is a valid Bio::MAGE::Association::End ok 94 - nodeContents set in new() ok 95 - setNodeContents returns correct value ok 96 - getNodeContents fetches correct value ok 97 - addNodeContents returns number of items in list ok 98 - addNodeContents adds correct value ok 99 - setNodeContents throws exception with non-array argument ok 100 - setNodeContents throws exception with bad argument array ok 101 - addNodeContents throws exception with no arguments ok 102 - addNodeContents throws exception with bad array ok 103 - setNodeContents accepts empty array ref ok 104 - getNodeContents throws exception with argument ok 105 - setNodeContents throws exception with no argument ok 106 - setNodeContents throws exception with too many argument ok 107 - setNodeContents accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - nodeContents->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - nodeContents->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 133 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok t/NodeContents.t ................. 1..115 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeContents; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 6 - setDesignElementDimension returns value ok 7 - getDesignElementDimension fetches correct value ok 8 - setDesignElementDimension throws exception with bad argument ok 9 - getDesignElementDimension throws exception with argument ok 10 - setDesignElementDimension throws exception with no argument ok 11 - setDesignElementDimension throws exception with too many argument ok 12 - setDesignElementDimension accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 19 - setBioAssayDimension returns value ok 20 - getBioAssayDimension fetches correct value ok 21 - setBioAssayDimension throws exception with bad argument ok 22 - getBioAssayDimension throws exception with argument ok 23 - setBioAssayDimension throws exception with no argument ok 24 - setBioAssayDimension throws exception with too many argument ok 25 - setBioAssayDimension accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 31 - descriptions set in new() ok 32 - setDescriptions returns correct value ok 33 - getDescriptions fetches correct value ok 34 - addDescriptions returns number of items in list ok 35 - addDescriptions adds correct value ok 36 - setDescriptions throws exception with non-array argument ok 37 - setDescriptions throws exception with bad argument array ok 38 - addDescriptions throws exception with no arguments ok 39 - addDescriptions throws exception with bad array ok 40 - setDescriptions accepts empty array ref ok 41 - getDescriptions throws exception with argument ok 42 - setDescriptions throws exception with no argument ok 43 - setDescriptions throws exception with too many argument ok 44 - setDescriptions accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - descriptions->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 102 - setQuantitationDimension returns value ok 103 - getQuantitationDimension fetches correct value ok 104 - setQuantitationDimension throws exception with bad argument ok 105 - getQuantitationDimension throws exception with argument ok 106 - setQuantitationDimension throws exception with no argument ok 107 - setQuantitationDimension throws exception with too many argument ok 108 - setQuantitationDimension accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - quantitationDimension->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - quantitationDimension->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok t/NodeValue.t .................... 1..76 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeValue; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setScale returns value ok 32 - getScale fetches correct value ok 33 - setScale throws exception with bad argument ok 34 - getScale throws exception with argument ok 35 - setScale throws exception with no argument ok 36 - setScale throws exception with too many argument ok 37 - setScale accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - scale->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - scale->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setType returns value ok 45 - getType fetches correct value ok 46 - setType throws exception with bad argument ok 47 - getType throws exception with argument ok 48 - setType throws exception with no argument ok 49 - setType throws exception with too many argument ok 50 - setType accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - type->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - type->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok t/OntologyEntry.t ................ 1..75 ok 1 - use Bio::MAGE::Description::OntologyEntry; ok 2 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - category new ok 12 - category getter/setter ok 13 - category getter throws exception with argument ok 14 - category setter throws exception with no argument ok 15 - category setter throws exception with too many argument ok 16 - category setter accepts undef ok 17 - description new ok 18 - description getter/setter ok 19 - description getter throws exception with argument ok 20 - description setter throws exception with no argument ok 21 - description setter throws exception with too many argument ok 22 - description setter accepts undef ok 23 - associations set in new() ok 24 - setAssociations returns correct value ok 25 - getAssociations fetches correct value ok 26 - addAssociations returns number of items in list ok 27 - addAssociations adds correct value ok 28 - setAssociations throws exception with non-array argument ok 29 - setAssociations throws exception with bad argument array ok 30 - addAssociations throws exception with no arguments ok 31 - addAssociations throws exception with bad array ok 32 - setAssociations accepts empty array ref ok 33 - getAssociations throws exception with argument ok 34 - setAssociations throws exception with no argument ok 35 - setAssociations throws exception with too many argument ok 36 - setAssociations accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - associations->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - associations->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setOntologyReference returns value ok 44 - getOntologyReference fetches correct value ok 45 - setOntologyReference throws exception with bad argument ok 46 - getOntologyReference throws exception with argument ok 47 - setOntologyReference throws exception with no argument ok 48 - setOntologyReference throws exception with too many argument ok 49 - setOntologyReference accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - ontologyReference->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - ontologyReference->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 75 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok t/Organization.t ................. 1..156 ok 1 - use Bio::MAGE::AuditAndSecurity::Organization; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - fax new ok 24 - fax getter/setter ok 25 - fax getter throws exception with argument ok 26 - fax setter throws exception with no argument ok 27 - fax setter throws exception with too many argument ok 28 - fax setter accepts undef ok 29 - tollFreePhone new ok 30 - tollFreePhone getter/setter ok 31 - tollFreePhone getter throws exception with argument ok 32 - tollFreePhone setter throws exception with no argument ok 33 - tollFreePhone setter throws exception with too many argument ok 34 - tollFreePhone setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 73 - setParent returns value ok 74 - getParent fetches correct value ok 75 - setParent throws exception with bad argument ok 76 - getParent throws exception with argument ok 77 - setParent throws exception with no argument ok 78 - setParent throws exception with too many argument ok 79 - setParent accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - parent->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - parent->self() is a valid Bio::MAGE::Association::End ok 85 - descriptions set in new() ok 86 - setDescriptions returns correct value ok 87 - getDescriptions fetches correct value ok 88 - addDescriptions returns number of items in list ok 89 - addDescriptions adds correct value ok 90 - setDescriptions throws exception with non-array argument ok 91 - setDescriptions throws exception with bad argument array ok 92 - addDescriptions throws exception with no arguments ok 93 - addDescriptions throws exception with bad array ok 94 - setDescriptions accepts empty array ref ok 95 - getDescriptions throws exception with argument ok 96 - setDescriptions throws exception with no argument ok 97 - setDescriptions throws exception with too many argument ok 98 - setDescriptions accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - descriptions->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 124 - setSecurity returns value ok 125 - getSecurity fetches correct value ok 126 - setSecurity throws exception with bad argument ok 127 - getSecurity throws exception with argument ok 128 - setSecurity throws exception with no argument ok 129 - setSecurity throws exception with too many argument ok 130 - setSecurity accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - security->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->self() is a valid Bio::MAGE::Association::End ok 136 - propertySets set in new() ok 137 - setPropertySets returns correct value ok 138 - getPropertySets fetches correct value ok 139 - addPropertySets returns number of items in list ok 140 - addPropertySets adds correct value ok 141 - setPropertySets throws exception with non-array argument ok 142 - setPropertySets throws exception with bad argument array ok 143 - addPropertySets throws exception with no arguments ok 144 - addPropertySets throws exception with bad array ok 145 - setPropertySets accepts empty array ref ok 146 - getPropertySets throws exception with argument ok 147 - setPropertySets throws exception with no argument ok 148 - setPropertySets throws exception with too many argument ok 149 - setPropertySets accepts undef ok 150 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 151 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 152 - propertySets->other() is a valid Bio::MAGE::Association::End ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - propertySets->self() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 156 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/Parameter.t .................... 1..114 ok 1 - use Bio::MAGE::Protocol::Parameter; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 101 - setDefaultValue returns value ok 102 - getDefaultValue fetches correct value ok 103 - setDefaultValue throws exception with bad argument ok 104 - getDefaultValue throws exception with argument ok 105 - setDefaultValue throws exception with no argument ok 106 - setDefaultValue throws exception with too many argument ok 107 - setDefaultValue accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - defaultValue->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - defaultValue->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 114 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok t/Parameterizable.t .............. 1..119 ok 1 - use Bio::MAGE::Protocol::Parameterizable; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - parameterTypes set in new() ok 24 - setParameterTypes returns correct value ok 25 - getParameterTypes fetches correct value ok 26 - addParameterTypes returns number of items in list ok 27 - addParameterTypes adds correct value ok 28 - setParameterTypes throws exception with non-array argument ok 29 - setParameterTypes throws exception with bad argument array ok 30 - addParameterTypes throws exception with no arguments ok 31 - addParameterTypes throws exception with bad array ok 32 - setParameterTypes accepts empty array ref ok 33 - getParameterTypes throws exception with argument ok 34 - setParameterTypes throws exception with no argument ok 35 - setParameterTypes throws exception with too many argument ok 36 - setParameterTypes accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 42 - descriptions set in new() ok 43 - setDescriptions returns correct value ok 44 - getDescriptions fetches correct value ok 45 - addDescriptions returns number of items in list ok 46 - addDescriptions adds correct value ok 47 - setDescriptions throws exception with non-array argument ok 48 - setDescriptions throws exception with bad argument array ok 49 - addDescriptions throws exception with no arguments ok 50 - addDescriptions throws exception with bad array ok 51 - setDescriptions accepts empty array ref ok 52 - getDescriptions throws exception with argument ok 53 - setDescriptions throws exception with no argument ok 54 - setDescriptions throws exception with too many argument ok 55 - setDescriptions accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - descriptions->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - descriptions->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 62 - setSecurity returns value ok 63 - getSecurity fetches correct value ok 64 - setSecurity throws exception with bad argument ok 65 - getSecurity throws exception with argument ok 66 - setSecurity throws exception with no argument ok 67 - setSecurity throws exception with too many argument ok 68 - setSecurity accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - security->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - security->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - propertySets set in new() ok 94 - setPropertySets returns correct value ok 95 - getPropertySets fetches correct value ok 96 - addPropertySets returns number of items in list ok 97 - addPropertySets adds correct value ok 98 - setPropertySets throws exception with non-array argument ok 99 - setPropertySets throws exception with bad argument array ok 100 - addPropertySets throws exception with no arguments ok 101 - addPropertySets throws exception with bad array ok 102 - setPropertySets accepts empty array ref ok 103 - getPropertySets throws exception with argument ok 104 - setPropertySets throws exception with no argument ok 105 - setPropertySets throws exception with too many argument ok 106 - setPropertySets accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - propertySets->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - propertySets->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 113 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok 114 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 115 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok 116 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 117 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok t/ParameterizableApplication.t ... 1..101 ok 1 - use Bio::MAGE::Protocol::ParameterizableApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - auditTrail set in new() ok 25 - setAuditTrail returns correct value ok 26 - getAuditTrail fetches correct value ok 27 - addAuditTrail returns number of items in list ok 28 - addAuditTrail adds correct value ok 29 - setAuditTrail throws exception with non-array argument ok 30 - setAuditTrail throws exception with bad argument array ok 31 - addAuditTrail throws exception with no arguments ok 32 - addAuditTrail throws exception with bad array ok 33 - setAuditTrail accepts empty array ref ok 34 - getAuditTrail throws exception with argument ok 35 - setAuditTrail throws exception with no argument ok 36 - setAuditTrail throws exception with too many argument ok 37 - setAuditTrail accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - parameterValues set in new() ok 76 - setParameterValues returns correct value ok 77 - getParameterValues fetches correct value ok 78 - addParameterValues returns number of items in list ok 79 - addParameterValues adds correct value ok 80 - setParameterValues throws exception with non-array argument ok 81 - setParameterValues throws exception with bad argument array ok 82 - addParameterValues throws exception with no arguments ok 83 - addParameterValues throws exception with bad array ok 84 - setParameterValues accepts empty array ref ok 85 - getParameterValues throws exception with argument ok 86 - setParameterValues throws exception with no argument ok 87 - setParameterValues throws exception with too many argument ok 88 - setParameterValues accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 94 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 95 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 97 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 98 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 99 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 100 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 101 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok t/ParameterValue.t ............... 1..44 ok 1 - use Bio::MAGE::Protocol::ParameterValue; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 12 - setParameterType returns value ok 13 - getParameterType fetches correct value ok 14 - setParameterType throws exception with bad argument ok 15 - getParameterType throws exception with argument ok 16 - setParameterType throws exception with no argument ok 17 - setParameterType throws exception with too many argument ok 18 - setParameterType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - parameterType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - parameterType->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok t/Person.t ....................... 1..174 ok 1 - use Bio::MAGE::AuditAndSecurity::Person; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 3 - package ok 4 - class_name ok 5 - firstName new ok 6 - firstName getter/setter ok 7 - firstName getter throws exception with argument ok 8 - firstName setter throws exception with no argument ok 9 - firstName setter throws exception with too many argument ok 10 - firstName setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - midInitials new ok 24 - midInitials getter/setter ok 25 - midInitials getter throws exception with argument ok 26 - midInitials setter throws exception with no argument ok 27 - midInitials setter throws exception with too many argument ok 28 - midInitials setter accepts undef ok 29 - phone new ok 30 - phone getter/setter ok 31 - phone getter throws exception with argument ok 32 - phone setter throws exception with no argument ok 33 - phone setter throws exception with too many argument ok 34 - phone setter accepts undef ok 35 - email new ok 36 - email getter/setter ok 37 - email getter throws exception with argument ok 38 - email setter throws exception with no argument ok 39 - email setter throws exception with too many argument ok 40 - email setter accepts undef ok 41 - identifier new ok 42 - identifier getter/setter ok 43 - identifier getter throws exception with argument ok 44 - identifier setter throws exception with no argument ok 45 - identifier setter throws exception with too many argument ok 46 - identifier setter accepts undef ok 47 - tollFreePhone new ok 48 - tollFreePhone getter/setter ok 49 - tollFreePhone getter throws exception with argument ok 50 - tollFreePhone setter throws exception with no argument ok 51 - tollFreePhone setter throws exception with too many argument ok 52 - tollFreePhone setter accepts undef ok 53 - fax new ok 54 - fax getter/setter ok 55 - fax getter throws exception with argument ok 56 - fax setter throws exception with no argument ok 57 - fax setter throws exception with too many argument ok 58 - fax setter accepts undef ok 59 - lastName new ok 60 - lastName getter/setter ok 61 - lastName getter throws exception with argument ok 62 - lastName setter throws exception with no argument ok 63 - lastName setter throws exception with too many argument ok 64 - lastName setter accepts undef ok 65 - address new ok 66 - address getter/setter ok 67 - address getter throws exception with argument ok 68 - address setter throws exception with no argument ok 69 - address setter throws exception with too many argument ok 70 - address setter accepts undef ok 71 - roles set in new() ok 72 - setRoles returns correct value ok 73 - getRoles fetches correct value ok 74 - addRoles returns number of items in list ok 75 - addRoles adds correct value ok 76 - setRoles throws exception with non-array argument ok 77 - setRoles throws exception with bad argument array ok 78 - addRoles throws exception with no arguments ok 79 - addRoles throws exception with bad array ok 80 - setRoles accepts empty array ref ok 81 - getRoles throws exception with argument ok 82 - setRoles throws exception with no argument ok 83 - setRoles throws exception with too many argument ok 84 - setRoles accepts undef ok 85 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - roles->other() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - roles->self() is a valid Bio::MAGE::Association::End ok 90 - descriptions set in new() ok 91 - setDescriptions returns correct value ok 92 - getDescriptions fetches correct value ok 93 - addDescriptions returns number of items in list ok 94 - addDescriptions adds correct value ok 95 - setDescriptions throws exception with non-array argument ok 96 - setDescriptions throws exception with bad argument array ok 97 - addDescriptions throws exception with no arguments ok 98 - addDescriptions throws exception with bad array ok 99 - setDescriptions accepts empty array ref ok 100 - getDescriptions throws exception with argument ok 101 - setDescriptions throws exception with no argument ok 102 - setDescriptions throws exception with too many argument ok 103 - setDescriptions accepts undef ok 104 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - descriptions->other() is a valid Bio::MAGE::Association::End ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - descriptions->self() is a valid Bio::MAGE::Association::End ok 109 - auditTrail set in new() ok 110 - setAuditTrail returns correct value ok 111 - getAuditTrail fetches correct value ok 112 - addAuditTrail returns number of items in list ok 113 - addAuditTrail adds correct value ok 114 - setAuditTrail throws exception with non-array argument ok 115 - setAuditTrail throws exception with bad argument array ok 116 - addAuditTrail throws exception with no arguments ok 117 - addAuditTrail throws exception with bad array ok 118 - setAuditTrail accepts empty array ref ok 119 - getAuditTrail throws exception with argument ok 120 - setAuditTrail throws exception with no argument ok 121 - setAuditTrail throws exception with too many argument ok 122 - setAuditTrail accepts undef ok 123 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 129 - setSecurity returns value ok 130 - getSecurity fetches correct value ok 131 - setSecurity throws exception with bad argument ok 132 - getSecurity throws exception with argument ok 133 - setSecurity throws exception with no argument ok 134 - setSecurity throws exception with too many argument ok 135 - setSecurity accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - security->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - security->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 142 - setAffiliation returns value ok 143 - getAffiliation fetches correct value ok 144 - setAffiliation throws exception with bad argument ok 145 - getAffiliation throws exception with argument ok 146 - setAffiliation throws exception with no argument ok 147 - setAffiliation throws exception with too many argument ok 148 - setAffiliation accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - affiliation->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - affiliation->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 174 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/PhysicalArrayDesign.t .......... 1..227 ok 1 - use Bio::MAGE::ArrayDesign::PhysicalArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - auditTrail set in new() ok 30 - setAuditTrail returns correct value ok 31 - getAuditTrail fetches correct value ok 32 - addAuditTrail returns number of items in list ok 33 - addAuditTrail adds correct value ok 34 - setAuditTrail throws exception with non-array argument ok 35 - setAuditTrail throws exception with bad argument array ok 36 - addAuditTrail throws exception with no arguments ok 37 - addAuditTrail throws exception with bad array ok 38 - setAuditTrail accepts empty array ref ok 39 - getAuditTrail throws exception with argument ok 40 - setAuditTrail throws exception with no argument ok 41 - setAuditTrail throws exception with too many argument ok 42 - setAuditTrail accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 48 - propertySets set in new() ok 49 - setPropertySets returns correct value ok 50 - getPropertySets fetches correct value ok 51 - addPropertySets returns number of items in list ok 52 - addPropertySets adds correct value ok 53 - setPropertySets throws exception with non-array argument ok 54 - setPropertySets throws exception with bad argument array ok 55 - addPropertySets throws exception with no arguments ok 56 - addPropertySets throws exception with bad array ok 57 - setPropertySets accepts empty array ref ok 58 - getPropertySets throws exception with argument ok 59 - setPropertySets throws exception with no argument ok 60 - setPropertySets throws exception with too many argument ok 61 - setPropertySets accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - propertySets->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - propertySets->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 68 - setSurfaceType returns value ok 69 - getSurfaceType fetches correct value ok 70 - setSurfaceType throws exception with bad argument ok 71 - getSurfaceType throws exception with argument ok 72 - setSurfaceType throws exception with no argument ok 73 - setSurfaceType throws exception with too many argument ok 74 - setSurfaceType accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - surfaceType->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - surfaceType->self() is a valid Bio::MAGE::Association::End ok 80 - designProviders set in new() ok 81 - setDesignProviders returns correct value ok 82 - getDesignProviders fetches correct value ok 83 - addDesignProviders returns number of items in list ok 84 - addDesignProviders adds correct value ok 85 - setDesignProviders throws exception with non-array argument ok 86 - setDesignProviders throws exception with bad argument array ok 87 - addDesignProviders throws exception with no arguments ok 88 - addDesignProviders throws exception with bad array ok 89 - setDesignProviders accepts empty array ref ok 90 - getDesignProviders throws exception with argument ok 91 - setDesignProviders throws exception with no argument ok 92 - setDesignProviders throws exception with too many argument ok 93 - setDesignProviders accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - designProviders->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - designProviders->self() is a valid Bio::MAGE::Association::End ok 99 - protocolApplications set in new() ok 100 - setProtocolApplications returns correct value ok 101 - getProtocolApplications fetches correct value ok 102 - addProtocolApplications returns number of items in list ok 103 - addProtocolApplications adds correct value ok 104 - setProtocolApplications throws exception with non-array argument ok 105 - setProtocolApplications throws exception with bad argument array ok 106 - addProtocolApplications throws exception with no arguments ok 107 - addProtocolApplications throws exception with bad array ok 108 - setProtocolApplications accepts empty array ref ok 109 - getProtocolApplications throws exception with argument ok 110 - setProtocolApplications throws exception with no argument ok 111 - setProtocolApplications throws exception with too many argument ok 112 - setProtocolApplications accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 118 - reporterGroups set in new() ok 119 - setReporterGroups returns correct value ok 120 - getReporterGroups fetches correct value ok 121 - addReporterGroups returns number of items in list ok 122 - addReporterGroups adds correct value ok 123 - setReporterGroups throws exception with non-array argument ok 124 - setReporterGroups throws exception with bad argument array ok 125 - addReporterGroups throws exception with no arguments ok 126 - addReporterGroups throws exception with bad array ok 127 - setReporterGroups accepts empty array ref ok 128 - getReporterGroups throws exception with argument ok 129 - setReporterGroups throws exception with no argument ok 130 - setReporterGroups throws exception with too many argument ok 131 - setReporterGroups accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 137 - zoneGroups set in new() ok 138 - setZoneGroups returns correct value ok 139 - getZoneGroups fetches correct value ok 140 - addZoneGroups returns number of items in list ok 141 - addZoneGroups adds correct value ok 142 - setZoneGroups throws exception with non-array argument ok 143 - setZoneGroups throws exception with bad argument array ok 144 - addZoneGroups throws exception with no arguments ok 145 - addZoneGroups throws exception with bad array ok 146 - setZoneGroups accepts empty array ref ok 147 - getZoneGroups throws exception with argument ok 148 - setZoneGroups throws exception with no argument ok 149 - setZoneGroups throws exception with too many argument ok 150 - setZoneGroups accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - zoneGroups->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - zoneGroups->self() is a valid Bio::MAGE::Association::End ok 156 - featureGroups set in new() ok 157 - setFeatureGroups returns correct value ok 158 - getFeatureGroups fetches correct value ok 159 - addFeatureGroups returns number of items in list ok 160 - addFeatureGroups adds correct value ok 161 - setFeatureGroups throws exception with non-array argument ok 162 - setFeatureGroups throws exception with bad argument array ok 163 - addFeatureGroups throws exception with no arguments ok 164 - addFeatureGroups throws exception with bad array ok 165 - setFeatureGroups accepts empty array ref ok 166 - getFeatureGroups throws exception with argument ok 167 - setFeatureGroups throws exception with no argument ok 168 - setFeatureGroups throws exception with too many argument ok 169 - setFeatureGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 175 - descriptions set in new() ok 176 - setDescriptions returns correct value ok 177 - getDescriptions fetches correct value ok 178 - addDescriptions returns number of items in list ok 179 - addDescriptions adds correct value ok 180 - setDescriptions throws exception with non-array argument ok 181 - setDescriptions throws exception with bad argument array ok 182 - addDescriptions throws exception with no arguments ok 183 - addDescriptions throws exception with bad array ok 184 - setDescriptions accepts empty array ref ok 185 - getDescriptions throws exception with argument ok 186 - setDescriptions throws exception with no argument ok 187 - setDescriptions throws exception with too many argument ok 188 - setDescriptions accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - descriptions->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - descriptions->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 195 - setSecurity returns value ok 196 - getSecurity fetches correct value ok 197 - setSecurity throws exception with bad argument ok 198 - getSecurity throws exception with argument ok 199 - setSecurity throws exception with no argument ok 200 - setSecurity throws exception with too many argument ok 201 - setSecurity accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - security->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - security->self() is a valid Bio::MAGE::Association::End ok 207 - compositeGroups set in new() ok 208 - setCompositeGroups returns correct value ok 209 - getCompositeGroups fetches correct value ok 210 - addCompositeGroups returns number of items in list ok 211 - addCompositeGroups adds correct value ok 212 - setCompositeGroups throws exception with non-array argument ok 213 - setCompositeGroups throws exception with bad argument array ok 214 - addCompositeGroups throws exception with no arguments ok 215 - addCompositeGroups throws exception with bad array ok 216 - setCompositeGroups accepts empty array ref ok 217 - getCompositeGroups throws exception with argument ok 218 - setCompositeGroups throws exception with no argument ok 219 - setCompositeGroups throws exception with too many argument ok 220 - setCompositeGroups accepts undef ok 221 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 222 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 223 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 224 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 225 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 226 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 227 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok t/PhysicalBioAssay.t ............. 1..177 ok 1 - use Bio::MAGE::BioAssay::PhysicalBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 37 - setBioAssayCreation returns value ok 38 - getBioAssayCreation fetches correct value ok 39 - setBioAssayCreation throws exception with bad argument ok 40 - getBioAssayCreation throws exception with argument ok 41 - setBioAssayCreation throws exception with no argument ok 42 - setBioAssayCreation throws exception with too many argument ok 43 - setBioAssayCreation accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - bioAssayCreation->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - bioAssayCreation->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - physicalBioAssayData set in new() ok 88 - setPhysicalBioAssayData returns correct value ok 89 - getPhysicalBioAssayData fetches correct value ok 90 - addPhysicalBioAssayData returns number of items in list ok 91 - addPhysicalBioAssayData adds correct value ok 92 - setPhysicalBioAssayData throws exception with non-array argument ok 93 - setPhysicalBioAssayData throws exception with bad argument array ok 94 - addPhysicalBioAssayData throws exception with no arguments ok 95 - addPhysicalBioAssayData throws exception with bad array ok 96 - setPhysicalBioAssayData accepts empty array ref ok 97 - getPhysicalBioAssayData throws exception with argument ok 98 - setPhysicalBioAssayData throws exception with no argument ok 99 - setPhysicalBioAssayData throws exception with too many argument ok 100 - setPhysicalBioAssayData accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - physicalBioAssayData->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - physicalBioAssayData->self() is a valid Bio::MAGE::Association::End ok 106 - bioAssayFactorValues set in new() ok 107 - setBioAssayFactorValues returns correct value ok 108 - getBioAssayFactorValues fetches correct value ok 109 - addBioAssayFactorValues returns number of items in list ok 110 - addBioAssayFactorValues adds correct value ok 111 - setBioAssayFactorValues throws exception with non-array argument ok 112 - setBioAssayFactorValues throws exception with bad argument array ok 113 - addBioAssayFactorValues throws exception with no arguments ok 114 - addBioAssayFactorValues throws exception with bad array ok 115 - setBioAssayFactorValues accepts empty array ref ok 116 - getBioAssayFactorValues throws exception with argument ok 117 - setBioAssayFactorValues throws exception with no argument ok 118 - setBioAssayFactorValues throws exception with too many argument ok 119 - setBioAssayFactorValues accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 125 - bioAssayTreatments set in new() ok 126 - setBioAssayTreatments returns correct value ok 127 - getBioAssayTreatments fetches correct value ok 128 - addBioAssayTreatments returns number of items in list ok 129 - addBioAssayTreatments adds correct value ok 130 - setBioAssayTreatments throws exception with non-array argument ok 131 - setBioAssayTreatments throws exception with bad argument array ok 132 - addBioAssayTreatments throws exception with no arguments ok 133 - addBioAssayTreatments throws exception with bad array ok 134 - setBioAssayTreatments accepts empty array ref ok 135 - getBioAssayTreatments throws exception with argument ok 136 - setBioAssayTreatments throws exception with no argument ok 137 - setBioAssayTreatments throws exception with too many argument ok 138 - setBioAssayTreatments accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - bioAssayTreatments->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - bioAssayTreatments->self() is a valid Bio::MAGE::Association::End ok 144 - descriptions set in new() ok 145 - setDescriptions returns correct value ok 146 - getDescriptions fetches correct value ok 147 - addDescriptions returns number of items in list ok 148 - addDescriptions adds correct value ok 149 - setDescriptions throws exception with non-array argument ok 150 - setDescriptions throws exception with bad argument array ok 151 - addDescriptions throws exception with no arguments ok 152 - addDescriptions throws exception with bad array ok 153 - setDescriptions accepts empty array ref ok 154 - getDescriptions throws exception with argument ok 155 - setDescriptions throws exception with no argument ok 156 - setDescriptions throws exception with too many argument ok 157 - setDescriptions accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - descriptions->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - descriptions->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 164 - setSecurity returns value ok 165 - getSecurity fetches correct value ok 166 - setSecurity throws exception with bad argument ok 167 - getSecurity throws exception with argument ok 168 - setSecurity throws exception with no argument ok 169 - setSecurity throws exception with too many argument ok 170 - setSecurity accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - security->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - security->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/Position.t ..................... 1..50 ok 1 - use Bio::MAGE::DesignElement::Position; ok 2 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 3 - package ok 4 - class_name ok 5 - y new ok 6 - y getter/setter ok 7 - y getter throws exception with argument ok 8 - y setter throws exception with no argument ok 9 - y setter throws exception with too many argument ok 10 - y setter accepts undef ok 11 - x new ok 12 - x getter/setter ok 13 - x getter throws exception with argument ok 14 - x setter throws exception with no argument ok 15 - x setter throws exception with too many argument ok 16 - x setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok t/PositionDelta.t ................ 1..50 ok 1 - use Bio::MAGE::Array::PositionDelta; ok 2 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 3 - package ok 4 - class_name ok 5 - deltaX new ok 6 - deltaX getter/setter ok 7 - deltaX getter throws exception with argument ok 8 - deltaX setter throws exception with no argument ok 9 - deltaX setter throws exception with too many argument ok 10 - deltaX setter accepts undef ok 11 - deltaY new ok 12 - deltaY getter/setter ok 13 - deltaY getter throws exception with argument ok 14 - deltaY setter throws exception with no argument ok 15 - deltaY setter throws exception with too many argument ok 16 - deltaY setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok t/PresentAbsent.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::PresentAbsent; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Protocol.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Protocol; ok 2 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - text new ok 18 - text getter/setter ok 19 - text getter throws exception with argument ok 20 - text setter throws exception with no argument ok 21 - text setter throws exception with too many argument ok 22 - text setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - title new ok 30 - title getter/setter ok 31 - title getter throws exception with argument ok 32 - title setter throws exception with no argument ok 33 - title setter throws exception with too many argument ok 34 - title setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwares set in new() ok 93 - setHardwares returns correct value ok 94 - getHardwares fetches correct value ok 95 - addHardwares returns number of items in list ok 96 - addHardwares adds correct value ok 97 - setHardwares throws exception with non-array argument ok 98 - setHardwares throws exception with bad argument array ok 99 - addHardwares throws exception with no arguments ok 100 - addHardwares throws exception with bad array ok 101 - setHardwares accepts empty array ref ok 102 - getHardwares throws exception with argument ok 103 - setHardwares throws exception with no argument ok 104 - setHardwares throws exception with too many argument ok 105 - setHardwares accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwares->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwares->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/Protocol_package.t ............. 1..33 ok 1 - use Bio::MAGE::Protocol; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 4 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 5 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 6 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 7 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 8 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 9 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 10 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 11 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 12 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 13 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - hardware_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getHardware_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getHardware_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - software_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getSoftware_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSoftware_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - protocol_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getProtocol_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getProtocol_list not empty ok t/ProtocolApplication.t .......... 1..171 ok 1 - use Bio::MAGE::Protocol::ProtocolApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 3 - package ok 4 - class_name ok 5 - activityDate new ok 6 - activityDate getter/setter ok 7 - activityDate getter throws exception with argument ok 8 - activityDate setter throws exception with no argument ok 9 - activityDate setter throws exception with too many argument ok 10 - activityDate setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 12 - setProtocol returns value ok 13 - getProtocol fetches correct value ok 14 - setProtocol throws exception with bad argument ok 15 - getProtocol throws exception with argument ok 16 - setProtocol throws exception with no argument ok 17 - setProtocol throws exception with too many argument ok 18 - setProtocol accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - protocol->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - protocol->self() is a valid Bio::MAGE::Association::End ok 24 - hardwareApplications set in new() ok 25 - setHardwareApplications returns correct value ok 26 - getHardwareApplications fetches correct value ok 27 - addHardwareApplications returns number of items in list ok 28 - addHardwareApplications adds correct value ok 29 - setHardwareApplications throws exception with non-array argument ok 30 - setHardwareApplications throws exception with bad argument array ok 31 - addHardwareApplications throws exception with no arguments ok 32 - addHardwareApplications throws exception with bad array ok 33 - setHardwareApplications accepts empty array ref ok 34 - getHardwareApplications throws exception with argument ok 35 - setHardwareApplications throws exception with no argument ok 36 - setHardwareApplications throws exception with too many argument ok 37 - setHardwareApplications accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - hardwareApplications->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - hardwareApplications->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - softwareApplications set in new() ok 82 - setSoftwareApplications returns correct value ok 83 - getSoftwareApplications fetches correct value ok 84 - addSoftwareApplications returns number of items in list ok 85 - addSoftwareApplications adds correct value ok 86 - setSoftwareApplications throws exception with non-array argument ok 87 - setSoftwareApplications throws exception with bad argument array ok 88 - addSoftwareApplications throws exception with no arguments ok 89 - addSoftwareApplications throws exception with bad array ok 90 - setSoftwareApplications accepts empty array ref ok 91 - getSoftwareApplications throws exception with argument ok 92 - setSoftwareApplications throws exception with no argument ok 93 - setSoftwareApplications throws exception with too many argument ok 94 - setSoftwareApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - softwareApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - softwareApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - performers set in new() ok 133 - setPerformers returns correct value ok 134 - getPerformers fetches correct value ok 135 - addPerformers returns number of items in list ok 136 - addPerformers adds correct value ok 137 - setPerformers throws exception with non-array argument ok 138 - setPerformers throws exception with bad argument array ok 139 - addPerformers throws exception with no arguments ok 140 - addPerformers throws exception with bad array ok 141 - setPerformers accepts empty array ref ok 142 - getPerformers throws exception with argument ok 143 - setPerformers throws exception with no argument ok 144 - setPerformers throws exception with too many argument ok 145 - setPerformers accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - performers->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - performers->self() is a valid Bio::MAGE::Association::End ok 151 - parameterValues set in new() ok 152 - setParameterValues returns correct value ok 153 - getParameterValues fetches correct value ok 154 - addParameterValues returns number of items in list ok 155 - addParameterValues adds correct value ok 156 - setParameterValues throws exception with non-array argument ok 157 - setParameterValues throws exception with bad argument array ok 158 - addParameterValues throws exception with no arguments ok 159 - addParameterValues throws exception with bad array ok 160 - setParameterValues accepts empty array ref ok 161 - getParameterValues throws exception with argument ok 162 - setParameterValues throws exception with no argument ok 163 - setParameterValues throws exception with too many argument ok 164 - setParameterValues accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 171 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/PValue.t ....................... 1..184 ok 1 - use Bio::MAGE::QuantitationType::PValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/QuantitationType.t ............. 1..175 ok 1 - use Bio::MAGE::QuantitationType::QuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 173 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 174 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 175 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok t/QuantitationType_package.t ..... 1..23 ok 1 - use Bio::MAGE::QuantitationType; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 4 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 5 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 6 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 7 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 8 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 9 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 10 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 11 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 12 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 13 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 14 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 15 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 16 - tagname ok 17 - xml_lists ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - quantitationtype_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getQuantitationType_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getQuantitationType_list not empty ok t/QuantitationTypeDimension.t .... 1..107 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - quantitationTypes set in new() ok 18 - setQuantitationTypes returns correct value ok 19 - getQuantitationTypes fetches correct value ok 20 - addQuantitationTypes returns number of items in list ok 21 - addQuantitationTypes adds correct value ok 22 - setQuantitationTypes throws exception with non-array argument ok 23 - setQuantitationTypes throws exception with bad argument array ok 24 - addQuantitationTypes throws exception with no arguments ok 25 - addQuantitationTypes throws exception with bad array ok 26 - setQuantitationTypes accepts empty array ref ok 27 - getQuantitationTypes throws exception with argument ok 28 - setQuantitationTypes throws exception with no argument ok 29 - setQuantitationTypes throws exception with too many argument ok 30 - setQuantitationTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - quantitationTypes->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - quantitationTypes->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok t/QuantitationTypeMap.t .......... 1..139 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - sourcesQuantitationType set in new() ok 37 - setSourcesQuantitationType returns correct value ok 38 - getSourcesQuantitationType fetches correct value ok 39 - addSourcesQuantitationType returns number of items in list ok 40 - addSourcesQuantitationType adds correct value ok 41 - setSourcesQuantitationType throws exception with non-array argument ok 42 - setSourcesQuantitationType throws exception with bad argument array ok 43 - addSourcesQuantitationType throws exception with no arguments ok 44 - addSourcesQuantitationType throws exception with bad array ok 45 - setSourcesQuantitationType accepts empty array ref ok 46 - getSourcesQuantitationType throws exception with argument ok 47 - setSourcesQuantitationType throws exception with no argument ok 48 - setSourcesQuantitationType throws exception with too many argument ok 49 - setSourcesQuantitationType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - sourcesQuantitationType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - sourcesQuantitationType->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 107 - setTargetQuantitationType returns value ok 108 - getTargetQuantitationType fetches correct value ok 109 - setTargetQuantitationType throws exception with bad argument ok 110 - getTargetQuantitationType throws exception with argument ok 111 - setTargetQuantitationType throws exception with no argument ok 112 - setTargetQuantitationType throws exception with too many argument ok 113 - setTargetQuantitationType accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok t/QuantitationTypeMapping.t ...... 1..44 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - quantitationTypeMaps set in new() ok 25 - setQuantitationTypeMaps returns correct value ok 26 - getQuantitationTypeMaps fetches correct value ok 27 - addQuantitationTypeMaps returns number of items in list ok 28 - addQuantitationTypeMaps adds correct value ok 29 - setQuantitationTypeMaps throws exception with non-array argument ok 30 - setQuantitationTypeMaps throws exception with bad argument array ok 31 - addQuantitationTypeMaps throws exception with no arguments ok 32 - addQuantitationTypeMaps throws exception with bad array ok 33 - setQuantitationTypeMaps accepts empty array ref ok 34 - getQuantitationTypeMaps throws exception with argument ok 35 - setQuantitationTypeMaps throws exception with no argument ok 36 - setQuantitationTypeMaps throws exception with too many argument ok 37 - setQuantitationTypeMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok t/QuantityUnit.t ................. 1..47 ok 1 - use Bio::MAGE::Measurement::QuantityUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mol ok 19 - unitNameCV accepts amol ok 20 - unitNameCV accepts fmol ok 21 - unitNameCV accepts pmol ok 22 - unitNameCV accepts nmol ok 23 - unitNameCV accepts umol ok 24 - unitNameCV accepts mmol ok 25 - unitNameCV accepts molecules ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Ratio.t ........................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::Ratio; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Reporter.t ..................... 1..171 ok 1 - use Bio::MAGE::DesignElement::Reporter; ok 2 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setWarningType returns value ok 19 - getWarningType fetches correct value ok 20 - setWarningType throws exception with bad argument ok 21 - getWarningType throws exception with argument ok 22 - setWarningType throws exception with no argument ok 23 - setWarningType throws exception with too many argument ok 24 - setWarningType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - warningType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - warningType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setControlType returns value ok 32 - getControlType fetches correct value ok 33 - setControlType throws exception with bad argument ok 34 - getControlType throws exception with argument ok 35 - setControlType throws exception with no argument ok 36 - setControlType throws exception with too many argument ok 37 - setControlType accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - controlType->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - controlType->self() is a valid Bio::MAGE::Association::End ok 43 - failTypes set in new() ok 44 - setFailTypes returns correct value ok 45 - getFailTypes fetches correct value ok 46 - addFailTypes returns number of items in list ok 47 - addFailTypes adds correct value ok 48 - setFailTypes throws exception with non-array argument ok 49 - setFailTypes throws exception with bad argument array ok 50 - addFailTypes throws exception with no arguments ok 51 - addFailTypes throws exception with bad array ok 52 - setFailTypes accepts empty array ref ok 53 - getFailTypes throws exception with argument ok 54 - setFailTypes throws exception with no argument ok 55 - setFailTypes throws exception with too many argument ok 56 - setFailTypes accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - failTypes->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - failTypes->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - immobilizedCharacteristics set in new() ok 133 - setImmobilizedCharacteristics returns correct value ok 134 - getImmobilizedCharacteristics fetches correct value ok 135 - addImmobilizedCharacteristics returns number of items in list ok 136 - addImmobilizedCharacteristics adds correct value ok 137 - setImmobilizedCharacteristics throws exception with non-array argument ok 138 - setImmobilizedCharacteristics throws exception with bad argument array ok 139 - addImmobilizedCharacteristics throws exception with no arguments ok 140 - addImmobilizedCharacteristics throws exception with bad array ok 141 - setImmobilizedCharacteristics accepts empty array ref ok 142 - getImmobilizedCharacteristics throws exception with argument ok 143 - setImmobilizedCharacteristics throws exception with no argument ok 144 - setImmobilizedCharacteristics throws exception with too many argument ok 145 - setImmobilizedCharacteristics accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - immobilizedCharacteristics->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - immobilizedCharacteristics->self() is a valid Bio::MAGE::Association::End ok 151 - featureReporterMaps set in new() ok 152 - setFeatureReporterMaps returns correct value ok 153 - getFeatureReporterMaps fetches correct value ok 154 - addFeatureReporterMaps returns number of items in list ok 155 - addFeatureReporterMaps adds correct value ok 156 - setFeatureReporterMaps throws exception with non-array argument ok 157 - setFeatureReporterMaps throws exception with bad argument array ok 158 - addFeatureReporterMaps throws exception with no arguments ok 159 - addFeatureReporterMaps throws exception with bad array ok 160 - setFeatureReporterMaps accepts empty array ref ok 161 - getFeatureReporterMaps throws exception with argument ok 162 - setFeatureReporterMaps throws exception with no argument ok 163 - setFeatureReporterMaps throws exception with too many argument ok 164 - setFeatureReporterMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - featureReporterMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - featureReporterMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 171 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/ReporterCompositeMap.t ......... 1..139 ok 1 - use Bio::MAGE::DesignElement::ReporterCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporterPositionSources set in new() ok 18 - setReporterPositionSources returns correct value ok 19 - getReporterPositionSources fetches correct value ok 20 - addReporterPositionSources returns number of items in list ok 21 - addReporterPositionSources adds correct value ok 22 - setReporterPositionSources throws exception with non-array argument ok 23 - setReporterPositionSources throws exception with bad argument array ok 24 - addReporterPositionSources throws exception with no arguments ok 25 - addReporterPositionSources throws exception with bad array ok 26 - setReporterPositionSources accepts empty array ref ok 27 - getReporterPositionSources throws exception with argument ok 28 - setReporterPositionSources throws exception with no argument ok 29 - setReporterPositionSources throws exception with too many argument ok 30 - setReporterPositionSources accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporterPositionSources->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporterPositionSources->self() is a valid Bio::MAGE::Association::End ok 36 - protocolApplications set in new() ok 37 - setProtocolApplications returns correct value ok 38 - getProtocolApplications fetches correct value ok 39 - addProtocolApplications returns number of items in list ok 40 - addProtocolApplications adds correct value ok 41 - setProtocolApplications throws exception with non-array argument ok 42 - setProtocolApplications throws exception with bad argument array ok 43 - addProtocolApplications throws exception with no arguments ok 44 - addProtocolApplications throws exception with bad array ok 45 - setProtocolApplications accepts empty array ref ok 46 - getProtocolApplications throws exception with argument ok 47 - setProtocolApplications throws exception with no argument ok 48 - setProtocolApplications throws exception with too many argument ok 49 - setProtocolApplications accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 126 - setCompositeSequence returns value ok 127 - getCompositeSequence fetches correct value ok 128 - setCompositeSequence throws exception with bad argument ok 129 - getCompositeSequence throws exception with argument ok 130 - setCompositeSequence throws exception with no argument ok 131 - setCompositeSequence throws exception with too many argument ok 132 - setCompositeSequence accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/ReporterDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::ReporterDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/ReporterGroup.t ................ 1..139 ok 1 - use Bio::MAGE::ArrayDesign::ReporterGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - types set in new() ok 37 - setTypes returns correct value ok 38 - getTypes fetches correct value ok 39 - addTypes returns number of items in list ok 40 - addTypes adds correct value ok 41 - setTypes throws exception with non-array argument ok 42 - setTypes throws exception with bad argument array ok 43 - addTypes throws exception with no arguments ok 44 - addTypes throws exception with bad array ok 45 - setTypes accepts empty array ref ok 46 - getTypes throws exception with argument ok 47 - setTypes throws exception with no argument ok 48 - setTypes throws exception with too many argument ok 49 - setTypes accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - types->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - types->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/ReporterPosition.t ............. 1..69 ok 1 - use Bio::MAGE::DesignElement::ReporterPosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 37 - setReporter returns value ok 38 - getReporter fetches correct value ok 39 - setReporter throws exception with bad argument ok 40 - getReporter throws exception with argument ok 41 - setReporter throws exception with no argument ok 42 - setReporter throws exception with too many argument ok 43 - setReporter accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - reporter->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - reporter->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/Security.t ..................... 1..126 ok 1 - use Bio::MAGE::AuditAndSecurity::Security; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - owner set in new() ok 18 - setOwner returns correct value ok 19 - getOwner fetches correct value ok 20 - addOwner returns number of items in list ok 21 - addOwner adds correct value ok 22 - setOwner throws exception with non-array argument ok 23 - setOwner throws exception with bad argument array ok 24 - addOwner throws exception with no arguments ok 25 - addOwner throws exception with bad array ok 26 - setOwner accepts empty array ref ok 27 - getOwner throws exception with argument ok 28 - setOwner throws exception with no argument ok 29 - setOwner throws exception with too many argument ok 30 - setOwner accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - owner->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - owner->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - securityGroups set in new() ok 107 - setSecurityGroups returns correct value ok 108 - getSecurityGroups fetches correct value ok 109 - addSecurityGroups returns number of items in list ok 110 - addSecurityGroups adds correct value ok 111 - setSecurityGroups throws exception with non-array argument ok 112 - setSecurityGroups throws exception with bad argument array ok 113 - addSecurityGroups throws exception with no arguments ok 114 - addSecurityGroups throws exception with bad array ok 115 - setSecurityGroups accepts empty array ref ok 116 - getSecurityGroups throws exception with argument ok 117 - setSecurityGroups throws exception with no argument ok 118 - setSecurityGroups throws exception with too many argument ok 119 - setSecurityGroups accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - securityGroups->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - securityGroups->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok t/SecurityGroup.t ................ 1..107 ok 1 - use Bio::MAGE::AuditAndSecurity::SecurityGroup; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - members set in new() ok 18 - setMembers returns correct value ok 19 - getMembers fetches correct value ok 20 - addMembers returns number of items in list ok 21 - addMembers adds correct value ok 22 - setMembers throws exception with non-array argument ok 23 - setMembers throws exception with bad argument array ok 24 - addMembers throws exception with no arguments ok 25 - addMembers throws exception with bad array ok 26 - setMembers accepts empty array ref ok 27 - getMembers throws exception with argument ok 28 - setMembers throws exception with no argument ok 29 - setMembers throws exception with too many argument ok 30 - setMembers accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - members->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - members->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok t/SeqFeature.t ................... 1..107 ok 1 - use Bio::MAGE::BioSequence::SeqFeature; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 3 - package ok 4 - class_name ok 5 - basis new ok 6 - basis getter/setter ok 7 - basis getter throws exception with argument ok 8 - basis setter throws exception with no argument ok 9 - basis setter throws exception with too many argument ok 10 - basis setter accepts undef ok 11 - basis setter throws exception with bad argument ok 12 - basis accepts experimental ok 13 - basis accepts computational ok 14 - basis accepts both ok 15 - basis accepts unknown ok 16 - basis accepts NA ok 17 - regions set in new() ok 18 - setRegions returns correct value ok 19 - getRegions fetches correct value ok 20 - addRegions returns number of items in list ok 21 - addRegions adds correct value ok 22 - setRegions throws exception with non-array argument ok 23 - setRegions throws exception with bad argument array ok 24 - addRegions throws exception with no arguments ok 25 - addRegions throws exception with bad array ok 26 - setRegions accepts empty array ref ok 27 - getRegions throws exception with argument ok 28 - setRegions throws exception with no argument ok 29 - setRegions throws exception with too many argument ok 30 - setRegions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - regions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - regions->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 107 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok t/SeqFeatureLocation.t ........... 1..63 ok 1 - use Bio::MAGE::BioSequence::SeqFeatureLocation; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 3 - package ok 4 - class_name ok 5 - strandType new ok 6 - strandType getter/setter ok 7 - strandType getter throws exception with argument ok 8 - strandType setter throws exception with no argument ok 9 - strandType setter throws exception with too many argument ok 10 - strandType setter accepts undef ok 11 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 12 - setCoordinate returns value ok 13 - getCoordinate fetches correct value ok 14 - setCoordinate throws exception with bad argument ok 15 - getCoordinate throws exception with argument ok 16 - setCoordinate throws exception with no argument ok 17 - setCoordinate throws exception with too many argument ok 18 - setCoordinate accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - coordinate->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - coordinate->self() is a valid Bio::MAGE::Association::End ok 24 - subregions set in new() ok 25 - setSubregions returns correct value ok 26 - getSubregions fetches correct value ok 27 - addSubregions returns number of items in list ok 28 - addSubregions adds correct value ok 29 - setSubregions throws exception with non-array argument ok 30 - setSubregions throws exception with bad argument array ok 31 - addSubregions throws exception with no arguments ok 32 - addSubregions throws exception with bad array ok 33 - setSubregions accepts empty array ref ok 34 - getSubregions throws exception with argument ok 35 - setSubregions throws exception with no argument ok 36 - setSubregions throws exception with too many argument ok 37 - setSubregions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - subregions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - subregions->self() is a valid Bio::MAGE::Association::End ok 43 - propertySets set in new() ok 44 - setPropertySets returns correct value ok 45 - getPropertySets fetches correct value ok 46 - addPropertySets returns number of items in list ok 47 - addPropertySets adds correct value ok 48 - setPropertySets throws exception with non-array argument ok 49 - setPropertySets throws exception with bad argument array ok 50 - addPropertySets throws exception with no arguments ok 51 - addPropertySets throws exception with bad array ok 52 - setPropertySets accepts empty array ref ok 53 - getPropertySets throws exception with argument ok 54 - setPropertySets throws exception with no argument ok 55 - setPropertySets throws exception with too many argument ok 56 - setPropertySets accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - propertySets->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - propertySets->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok t/SequencePosition.t ............. 1..41 ok 1 - use Bio::MAGE::BioSequence::SequencePosition; ok 2 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 3 - package ok 4 - class_name ok 5 - start new ok 6 - start getter/setter ok 7 - start getter throws exception with argument ok 8 - start setter throws exception with no argument ok 9 - start setter throws exception with too many argument ok 10 - start setter accepts undef ok 11 - end new ok 12 - end getter/setter ok 13 - end getter throws exception with argument ok 14 - end setter throws exception with no argument ok 15 - end setter throws exception with too many argument ok 16 - end setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 37 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 38 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 39 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 40 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 41 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/Software.t ..................... 1..177 ok 1 - use Bio::MAGE::Protocol::Software; ok 2 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - softwareManufacturers set in new() ok 24 - setSoftwareManufacturers returns correct value ok 25 - getSoftwareManufacturers fetches correct value ok 26 - addSoftwareManufacturers returns number of items in list ok 27 - addSoftwareManufacturers adds correct value ok 28 - setSoftwareManufacturers throws exception with non-array argument ok 29 - setSoftwareManufacturers throws exception with bad argument array ok 30 - addSoftwareManufacturers throws exception with no arguments ok 31 - addSoftwareManufacturers throws exception with bad array ok 32 - setSoftwareManufacturers accepts empty array ref ok 33 - getSoftwareManufacturers throws exception with argument ok 34 - setSoftwareManufacturers throws exception with no argument ok 35 - setSoftwareManufacturers throws exception with too many argument ok 36 - setSoftwareManufacturers accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - softwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - softwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 42 - parameterTypes set in new() ok 43 - setParameterTypes returns correct value ok 44 - getParameterTypes fetches correct value ok 45 - addParameterTypes returns number of items in list ok 46 - addParameterTypes adds correct value ok 47 - setParameterTypes throws exception with non-array argument ok 48 - setParameterTypes throws exception with bad argument array ok 49 - addParameterTypes throws exception with no arguments ok 50 - addParameterTypes throws exception with bad array ok 51 - setParameterTypes accepts empty array ref ok 52 - getParameterTypes throws exception with argument ok 53 - setParameterTypes throws exception with no argument ok 54 - setParameterTypes throws exception with too many argument ok 55 - setParameterTypes accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 61 - auditTrail set in new() ok 62 - setAuditTrail returns correct value ok 63 - getAuditTrail fetches correct value ok 64 - addAuditTrail returns number of items in list ok 65 - addAuditTrail adds correct value ok 66 - setAuditTrail throws exception with non-array argument ok 67 - setAuditTrail throws exception with bad argument array ok 68 - addAuditTrail throws exception with no arguments ok 69 - addAuditTrail throws exception with bad array ok 70 - setAuditTrail accepts empty array ref ok 71 - getAuditTrail throws exception with argument ok 72 - setAuditTrail throws exception with no argument ok 73 - setAuditTrail throws exception with too many argument ok 74 - setAuditTrail accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 80 - propertySets set in new() ok 81 - setPropertySets returns correct value ok 82 - getPropertySets fetches correct value ok 83 - addPropertySets returns number of items in list ok 84 - addPropertySets adds correct value ok 85 - setPropertySets throws exception with non-array argument ok 86 - setPropertySets throws exception with bad argument array ok 87 - addPropertySets throws exception with no arguments ok 88 - addPropertySets throws exception with bad array ok 89 - setPropertySets accepts empty array ref ok 90 - getPropertySets throws exception with argument ok 91 - setPropertySets throws exception with no argument ok 92 - setPropertySets throws exception with too many argument ok 93 - setPropertySets accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - propertySets->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - softwares set in new() ok 119 - setSoftwares returns correct value ok 120 - getSoftwares fetches correct value ok 121 - addSoftwares returns number of items in list ok 122 - addSoftwares adds correct value ok 123 - setSoftwares throws exception with non-array argument ok 124 - setSoftwares throws exception with bad argument array ok 125 - addSoftwares throws exception with no arguments ok 126 - addSoftwares throws exception with bad array ok 127 - setSoftwares accepts empty array ref ok 128 - getSoftwares throws exception with argument ok 129 - setSoftwares throws exception with no argument ok 130 - setSoftwares throws exception with too many argument ok 131 - setSoftwares accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - softwares->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - softwares->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 138 - setHardware returns value ok 139 - getHardware fetches correct value ok 140 - setHardware throws exception with bad argument ok 141 - getHardware throws exception with argument ok 142 - setHardware throws exception with no argument ok 143 - setHardware throws exception with too many argument ok 144 - setHardware accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - hardware->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - hardware->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setType returns value ok 165 - getType fetches correct value ok 166 - setType throws exception with bad argument ok 167 - getType throws exception with argument ok 168 - setType throws exception with no argument ok 169 - setType throws exception with too many argument ok 170 - setType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - type->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - type->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 177 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/SoftwareApplication.t .......... 1..120 ok 1 - use Bio::MAGE::Protocol::SoftwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 3 - package ok 4 - class_name ok 5 - releaseDate new ok 6 - releaseDate getter/setter ok 7 - releaseDate getter throws exception with argument ok 8 - releaseDate setter throws exception with no argument ok 9 - releaseDate setter throws exception with too many argument ok 10 - releaseDate setter accepts undef ok 11 - version new ok 12 - version getter/setter ok 13 - version getter throws exception with argument ok 14 - version setter throws exception with no argument ok 15 - version setter throws exception with too many argument ok 16 - version setter accepts undef ok 17 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 18 - setSoftware returns value ok 19 - getSoftware fetches correct value ok 20 - setSoftware throws exception with bad argument ok 21 - getSoftware throws exception with argument ok 22 - setSoftware throws exception with no argument ok 23 - setSoftware throws exception with too many argument ok 24 - setSoftware accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - software->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - software->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - parameterValues set in new() ok 101 - setParameterValues returns correct value ok 102 - getParameterValues fetches correct value ok 103 - addParameterValues returns number of items in list ok 104 - addParameterValues adds correct value ok 105 - setParameterValues throws exception with non-array argument ok 106 - setParameterValues throws exception with bad argument array ok 107 - addParameterValues throws exception with no arguments ok 108 - addParameterValues throws exception with bad array ok 109 - setParameterValues accepts empty array ref ok 110 - getParameterValues throws exception with argument ok 111 - setParameterValues throws exception with no argument ok 112 - setParameterValues throws exception with too many argument ok 113 - setParameterValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 120 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/SpecializedQuantitationType.t .. 1..171 ok 1 - use Bio::MAGE::QuantitationType::SpecializedQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/StandardQuantitationType.t ..... 1..183 ok 1 - use Bio::MAGE::QuantitationType::StandardQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 173 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 174 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 175 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 176 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 177 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 178 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 179 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 180 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 181 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 182 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 183 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/TemperatureUnit.t .............. 1..41 ok 1 - use Bio::MAGE::Measurement::TemperatureUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts degree_C ok 19 - unitNameCV accepts degree_F ok 20 - unitNameCV accepts K ok 21 - propertySets set in new() ok 22 - setPropertySets returns correct value ok 23 - getPropertySets fetches correct value ok 24 - addPropertySets returns number of items in list ok 25 - addPropertySets adds correct value ok 26 - setPropertySets throws exception with non-array argument ok 27 - setPropertySets throws exception with bad argument array ok 28 - addPropertySets throws exception with no arguments ok 29 - addPropertySets throws exception with bad array ok 30 - setPropertySets accepts empty array ref ok 31 - getPropertySets throws exception with argument ok 32 - setPropertySets throws exception with no argument ok 33 - setPropertySets throws exception with too many argument ok 34 - setPropertySets accepts undef ok 35 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 36 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 37 - propertySets->other() is a valid Bio::MAGE::Association::End ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->self() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 41 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/TimeUnit.t ..................... 1..47 ok 1 - use Bio::MAGE::Measurement::TimeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts years ok 19 - unitNameCV accepts months ok 20 - unitNameCV accepts weeks ok 21 - unitNameCV accepts d ok 22 - unitNameCV accepts h ok 23 - unitNameCV accepts m ok 24 - unitNameCV accepts s ok 25 - unitNameCV accepts us ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Transformation.t ............... 1..178 ok 1 - use Bio::MAGE::BioAssayData::Transformation; ok 2 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 18 - setQuantitationTypeMapping returns value ok 19 - getQuantitationTypeMapping fetches correct value ok 20 - setQuantitationTypeMapping throws exception with bad argument ok 21 - getQuantitationTypeMapping throws exception with argument ok 22 - setQuantitationTypeMapping throws exception with no argument ok 23 - setQuantitationTypeMapping throws exception with too many argument ok 24 - setQuantitationTypeMapping accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - quantitationTypeMapping->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - quantitationTypeMapping->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 31 - setDesignElementMapping returns value ok 32 - getDesignElementMapping fetches correct value ok 33 - setDesignElementMapping throws exception with bad argument ok 34 - getDesignElementMapping throws exception with argument ok 35 - setDesignElementMapping throws exception with no argument ok 36 - setDesignElementMapping throws exception with too many argument ok 37 - setDesignElementMapping accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMapping->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMapping->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - protocolApplications set in new() ok 82 - setProtocolApplications returns correct value ok 83 - getProtocolApplications fetches correct value ok 84 - addProtocolApplications returns number of items in list ok 85 - addProtocolApplications adds correct value ok 86 - setProtocolApplications throws exception with non-array argument ok 87 - setProtocolApplications throws exception with bad argument array ok 88 - addProtocolApplications throws exception with no arguments ok 89 - addProtocolApplications throws exception with bad array ok 90 - setProtocolApplications accepts empty array ref ok 91 - getProtocolApplications throws exception with argument ok 92 - setProtocolApplications throws exception with no argument ok 93 - setProtocolApplications throws exception with too many argument ok 94 - setProtocolApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - bioAssayDataSources set in new() ok 133 - setBioAssayDataSources returns correct value ok 134 - getBioAssayDataSources fetches correct value ok 135 - addBioAssayDataSources returns number of items in list ok 136 - addBioAssayDataSources adds correct value ok 137 - setBioAssayDataSources throws exception with non-array argument ok 138 - setBioAssayDataSources throws exception with bad argument array ok 139 - addBioAssayDataSources throws exception with no arguments ok 140 - addBioAssayDataSources throws exception with bad array ok 141 - setBioAssayDataSources accepts empty array ref ok 142 - getBioAssayDataSources throws exception with argument ok 143 - setBioAssayDataSources throws exception with no argument ok 144 - setBioAssayDataSources throws exception with too many argument ok 145 - setBioAssayDataSources accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - bioAssayDataSources->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - bioAssayDataSources->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 152 - setDerivedBioAssayDataTarget returns value ok 153 - getDerivedBioAssayDataTarget fetches correct value ok 154 - setDerivedBioAssayDataTarget throws exception with bad argument ok 155 - getDerivedBioAssayDataTarget throws exception with argument ok 156 - setDerivedBioAssayDataTarget throws exception with no argument ok 157 - setDerivedBioAssayDataTarget throws exception with too many argument ok 158 - setDerivedBioAssayDataTarget accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - derivedBioAssayDataTarget->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - derivedBioAssayDataTarget->self() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 165 - setBioAssayMapping returns value ok 166 - getBioAssayMapping fetches correct value ok 167 - setBioAssayMapping throws exception with bad argument ok 168 - getBioAssayMapping throws exception with argument ok 169 - setBioAssayMapping throws exception with no argument ok 170 - setBioAssayMapping throws exception with too many argument ok 171 - setBioAssayMapping accepts undef ok 172 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - bioAssayMapping->other() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 176 - bioAssayMapping->self() is a valid Bio::MAGE::Association::End ok 177 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 178 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Treatment.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::Treatment; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - sourceBioMaterialMeasurements set in new() ok 24 - setSourceBioMaterialMeasurements returns correct value ok 25 - getSourceBioMaterialMeasurements fetches correct value ok 26 - addSourceBioMaterialMeasurements returns number of items in list ok 27 - addSourceBioMaterialMeasurements adds correct value ok 28 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 29 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 30 - addSourceBioMaterialMeasurements throws exception with no arguments ok 31 - addSourceBioMaterialMeasurements throws exception with bad array ok 32 - setSourceBioMaterialMeasurements accepts empty array ref ok 33 - getSourceBioMaterialMeasurements throws exception with argument ok 34 - setSourceBioMaterialMeasurements throws exception with no argument ok 35 - setSourceBioMaterialMeasurements throws exception with too many argument ok 36 - setSourceBioMaterialMeasurements accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 42 - auditTrail set in new() ok 43 - setAuditTrail returns correct value ok 44 - getAuditTrail fetches correct value ok 45 - addAuditTrail returns number of items in list ok 46 - addAuditTrail adds correct value ok 47 - setAuditTrail throws exception with non-array argument ok 48 - setAuditTrail throws exception with bad argument array ok 49 - addAuditTrail throws exception with no arguments ok 50 - addAuditTrail throws exception with bad array ok 51 - setAuditTrail accepts empty array ref ok 52 - getAuditTrail throws exception with argument ok 53 - setAuditTrail throws exception with no argument ok 54 - setAuditTrail throws exception with too many argument ok 55 - setAuditTrail accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 61 - propertySets set in new() ok 62 - setPropertySets returns correct value ok 63 - getPropertySets fetches correct value ok 64 - addPropertySets returns number of items in list ok 65 - addPropertySets adds correct value ok 66 - setPropertySets throws exception with non-array argument ok 67 - setPropertySets throws exception with bad argument array ok 68 - addPropertySets throws exception with no arguments ok 69 - addPropertySets throws exception with bad array ok 70 - setPropertySets accepts empty array ref ok 71 - getPropertySets throws exception with argument ok 72 - setPropertySets throws exception with no argument ok 73 - setPropertySets throws exception with too many argument ok 74 - setPropertySets accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - propertySets->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - propertySets->self() is a valid Bio::MAGE::Association::End ok 80 - protocolApplications set in new() ok 81 - setProtocolApplications returns correct value ok 82 - getProtocolApplications fetches correct value ok 83 - addProtocolApplications returns number of items in list ok 84 - addProtocolApplications adds correct value ok 85 - setProtocolApplications throws exception with non-array argument ok 86 - setProtocolApplications throws exception with bad argument array ok 87 - addProtocolApplications throws exception with no arguments ok 88 - addProtocolApplications throws exception with bad array ok 89 - setProtocolApplications accepts empty array ref ok 90 - getProtocolApplications throws exception with argument ok 91 - setProtocolApplications throws exception with no argument ok 92 - setProtocolApplications throws exception with too many argument ok 93 - setProtocolApplications accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 119 - setSecurity returns value ok 120 - getSecurity fetches correct value ok 121 - setSecurity throws exception with bad argument ok 122 - getSecurity throws exception with argument ok 123 - setSecurity throws exception with no argument ok 124 - setSecurity throws exception with too many argument ok 125 - setSecurity accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - security->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - security->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 132 - setAction returns value ok 133 - getAction fetches correct value ok 134 - setAction throws exception with bad argument ok 135 - getAction throws exception with argument ok 136 - setAction throws exception with no argument ok 137 - setAction throws exception with too many argument ok 138 - setAction accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - action->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - action->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 145 - setActionMeasurement returns value ok 146 - getActionMeasurement fetches correct value ok 147 - setActionMeasurement throws exception with bad argument ok 148 - getActionMeasurement throws exception with argument ok 149 - setActionMeasurement throws exception with no argument ok 150 - setActionMeasurement throws exception with too many argument ok 151 - setActionMeasurement accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - actionMeasurement->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - actionMeasurement->self() is a valid Bio::MAGE::Association::End ok 157 - compoundMeasurements set in new() ok 158 - setCompoundMeasurements returns correct value ok 159 - getCompoundMeasurements fetches correct value ok 160 - addCompoundMeasurements returns number of items in list ok 161 - addCompoundMeasurements adds correct value ok 162 - setCompoundMeasurements throws exception with non-array argument ok 163 - setCompoundMeasurements throws exception with bad argument array ok 164 - addCompoundMeasurements throws exception with no arguments ok 165 - addCompoundMeasurements throws exception with bad array ok 166 - setCompoundMeasurements accepts empty array ref ok 167 - getCompoundMeasurements throws exception with argument ok 168 - setCompoundMeasurements throws exception with no argument ok 169 - setCompoundMeasurements throws exception with too many argument ok 170 - setCompoundMeasurements accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - compoundMeasurements->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - compoundMeasurements->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 177 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Unit.t ......................... 1..45 ok 1 - use Bio::MAGE::Measurement::Unit; ok 2 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - propertySets set in new() ok 12 - setPropertySets returns correct value ok 13 - getPropertySets fetches correct value ok 14 - addPropertySets returns number of items in list ok 15 - addPropertySets adds correct value ok 16 - setPropertySets throws exception with non-array argument ok 17 - setPropertySets throws exception with bad argument array ok 18 - addPropertySets throws exception with no arguments ok 19 - addPropertySets throws exception with bad array ok 20 - setPropertySets accepts empty array ref ok 21 - getPropertySets throws exception with argument ok 22 - setPropertySets throws exception with no argument ok 23 - setPropertySets throws exception with too many argument ok 24 - setPropertySets accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - propertySets->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - propertySets->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 31 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 32 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 33 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok 34 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 35 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok 36 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 37 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok 38 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 39 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok 40 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 41 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 43 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok 44 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok t/VolumeUnit.t ................... 1..47 ok 1 - use Bio::MAGE::Measurement::VolumeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mL ok 19 - unitNameCV accepts cc ok 20 - unitNameCV accepts dL ok 21 - unitNameCV accepts L ok 22 - unitNameCV accepts uL ok 23 - unitNameCV accepts nL ok 24 - unitNameCV accepts pL ok 25 - unitNameCV accepts fL ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Zone.t ......................... 1..137 ok 1 - use Bio::MAGE::ArrayDesign::Zone; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 3 - package ok 4 - class_name ok 5 - lowerRightY new ok 6 - lowerRightY getter/setter ok 7 - lowerRightY getter throws exception with argument ok 8 - lowerRightY setter throws exception with no argument ok 9 - lowerRightY setter throws exception with too many argument ok 10 - lowerRightY setter accepts undef ok 11 - lowerRightX new ok 12 - lowerRightX getter/setter ok 13 - lowerRightX getter throws exception with argument ok 14 - lowerRightX setter throws exception with no argument ok 15 - lowerRightX setter throws exception with too many argument ok 16 - lowerRightX setter accepts undef ok 17 - upperLeftX new ok 18 - upperLeftX getter/setter ok 19 - upperLeftX getter throws exception with argument ok 20 - upperLeftX setter throws exception with no argument ok 21 - upperLeftX setter throws exception with too many argument ok 22 - upperLeftX setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - upperLeftY new ok 30 - upperLeftY getter/setter ok 31 - upperLeftY getter throws exception with argument ok 32 - upperLeftY setter throws exception with no argument ok 33 - upperLeftY setter throws exception with too many argument ok 34 - upperLeftY setter accepts undef ok 35 - identifier new ok 36 - identifier getter/setter ok 37 - identifier getter throws exception with argument ok 38 - identifier setter throws exception with no argument ok 39 - identifier setter throws exception with too many argument ok 40 - identifier setter accepts undef ok 41 - row new ok 42 - row getter/setter ok 43 - row getter throws exception with argument ok 44 - row setter throws exception with no argument ok 45 - row setter throws exception with too many argument ok 46 - row setter accepts undef ok 47 - column new ok 48 - column getter/setter ok 49 - column getter throws exception with argument ok 50 - column setter throws exception with no argument ok 51 - column setter throws exception with too many argument ok 52 - column setter accepts undef ok 53 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 54 - setDistanceUnit returns value ok 55 - getDistanceUnit fetches correct value ok 56 - setDistanceUnit throws exception with bad argument ok 57 - getDistanceUnit throws exception with argument ok 58 - setDistanceUnit throws exception with no argument ok 59 - setDistanceUnit throws exception with too many argument ok 60 - setDistanceUnit accepts undef ok 61 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 62 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 63 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 66 - descriptions set in new() ok 67 - setDescriptions returns correct value ok 68 - getDescriptions fetches correct value ok 69 - addDescriptions returns number of items in list ok 70 - addDescriptions adds correct value ok 71 - setDescriptions throws exception with non-array argument ok 72 - setDescriptions throws exception with bad argument array ok 73 - addDescriptions throws exception with no arguments ok 74 - addDescriptions throws exception with bad array ok 75 - setDescriptions accepts empty array ref ok 76 - getDescriptions throws exception with argument ok 77 - setDescriptions throws exception with no argument ok 78 - setDescriptions throws exception with too many argument ok 79 - setDescriptions accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - descriptions->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->self() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 86 - setSecurity returns value ok 87 - getSecurity fetches correct value ok 88 - setSecurity throws exception with bad argument ok 89 - getSecurity throws exception with argument ok 90 - setSecurity throws exception with no argument ok 91 - setSecurity throws exception with too many argument ok 92 - setSecurity accepts undef ok 93 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 94 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 95 - security->other() is a valid Bio::MAGE::Association::End ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->self() is a valid Bio::MAGE::Association::End ok 98 - auditTrail set in new() ok 99 - setAuditTrail returns correct value ok 100 - getAuditTrail fetches correct value ok 101 - addAuditTrail returns number of items in list ok 102 - addAuditTrail adds correct value ok 103 - setAuditTrail throws exception with non-array argument ok 104 - setAuditTrail throws exception with bad argument array ok 105 - addAuditTrail throws exception with no arguments ok 106 - addAuditTrail throws exception with bad array ok 107 - setAuditTrail accepts empty array ref ok 108 - getAuditTrail throws exception with argument ok 109 - setAuditTrail throws exception with no argument ok 110 - setAuditTrail throws exception with too many argument ok 111 - setAuditTrail accepts undef ok 112 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 113 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 114 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 117 - propertySets set in new() ok 118 - setPropertySets returns correct value ok 119 - getPropertySets fetches correct value ok 120 - addPropertySets returns number of items in list ok 121 - addPropertySets adds correct value ok 122 - setPropertySets throws exception with non-array argument ok 123 - setPropertySets throws exception with bad argument array ok 124 - addPropertySets throws exception with no arguments ok 125 - addPropertySets throws exception with bad array ok 126 - setPropertySets accepts empty array ref ok 127 - getPropertySets throws exception with argument ok 128 - setPropertySets throws exception with no argument ok 129 - setPropertySets throws exception with too many argument ok 130 - setPropertySets accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - propertySets->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->self() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok t/ZoneDefect.t ................... 1..64 ok 1 - use Bio::MAGE::Array::ZoneDefect; ok 2 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 19 - setZone returns value ok 20 - getZone fetches correct value ok 21 - setZone throws exception with bad argument ok 22 - getZone throws exception with argument ok 23 - setZone throws exception with no argument ok 24 - setZone throws exception with too many argument ok 25 - setZone accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - zone->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - zone->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok t/ZoneGroup.t .................... 1..94 ok 1 - use Bio::MAGE::ArrayDesign::ZoneGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 3 - package ok 4 - class_name ok 5 - zonesPerY new ok 6 - zonesPerY getter/setter ok 7 - zonesPerY getter throws exception with argument ok 8 - zonesPerY setter throws exception with no argument ok 9 - zonesPerY setter throws exception with too many argument ok 10 - zonesPerY setter accepts undef ok 11 - zonesPerX new ok 12 - zonesPerX getter/setter ok 13 - zonesPerX getter throws exception with argument ok 14 - zonesPerX setter throws exception with no argument ok 15 - zonesPerX setter throws exception with too many argument ok 16 - zonesPerX setter accepts undef ok 17 - spacingsBetweenZonesX new ok 18 - spacingsBetweenZonesX getter/setter ok 19 - spacingsBetweenZonesX getter throws exception with argument ok 20 - spacingsBetweenZonesX setter throws exception with no argument ok 21 - spacingsBetweenZonesX setter throws exception with too many argument ok 22 - spacingsBetweenZonesX setter accepts undef ok 23 - spacingsBetweenZonesY new ok 24 - spacingsBetweenZonesY getter/setter ok 25 - spacingsBetweenZonesY getter throws exception with argument ok 26 - spacingsBetweenZonesY setter throws exception with no argument ok 27 - spacingsBetweenZonesY setter throws exception with too many argument ok 28 - spacingsBetweenZonesY setter accepts undef ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 30 - setZoneLayout returns value ok 31 - getZoneLayout fetches correct value ok 32 - setZoneLayout throws exception with bad argument ok 33 - getZoneLayout throws exception with argument ok 34 - setZoneLayout throws exception with no argument ok 35 - setZoneLayout throws exception with too many argument ok 36 - setZoneLayout accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - zoneLayout->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - zoneLayout->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 43 - setDistanceUnit returns value ok 44 - getDistanceUnit fetches correct value ok 45 - setDistanceUnit throws exception with bad argument ok 46 - getDistanceUnit throws exception with argument ok 47 - setDistanceUnit throws exception with no argument ok 48 - setDistanceUnit throws exception with too many argument ok 49 - setDistanceUnit accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - zoneLocations set in new() ok 75 - setZoneLocations returns correct value ok 76 - getZoneLocations fetches correct value ok 77 - addZoneLocations returns number of items in list ok 78 - addZoneLocations adds correct value ok 79 - setZoneLocations throws exception with non-array argument ok 80 - setZoneLocations throws exception with bad argument array ok 81 - addZoneLocations throws exception with no arguments ok 82 - addZoneLocations throws exception with bad array ok 83 - setZoneLocations accepts empty array ref ok 84 - getZoneLocations throws exception with argument ok 85 - setZoneLocations throws exception with no argument ok 86 - setZoneLocations throws exception with too many argument ok 87 - setZoneLocations accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - zoneLocations->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - zoneLocations->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 94 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok t/ZoneLayout.t ................... 1..62 ok 1 - use Bio::MAGE::ArrayDesign::ZoneLayout; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 3 - package ok 4 - class_name ok 5 - spacingBetweenRows new ok 6 - spacingBetweenRows getter/setter ok 7 - spacingBetweenRows getter throws exception with argument ok 8 - spacingBetweenRows setter throws exception with no argument ok 9 - spacingBetweenRows setter throws exception with too many argument ok 10 - spacingBetweenRows setter accepts undef ok 11 - numFeaturesPerCol new ok 12 - numFeaturesPerCol getter/setter ok 13 - numFeaturesPerCol getter throws exception with argument ok 14 - numFeaturesPerCol setter throws exception with no argument ok 15 - numFeaturesPerCol setter throws exception with too many argument ok 16 - numFeaturesPerCol setter accepts undef ok 17 - numFeaturesPerRow new ok 18 - numFeaturesPerRow getter/setter ok 19 - numFeaturesPerRow getter throws exception with argument ok 20 - numFeaturesPerRow setter throws exception with no argument ok 21 - numFeaturesPerRow setter throws exception with too many argument ok 22 - numFeaturesPerRow setter accepts undef ok 23 - spacingBetweenCols new ok 24 - spacingBetweenCols getter/setter ok 25 - spacingBetweenCols getter throws exception with argument ok 26 - spacingBetweenCols setter throws exception with no argument ok 27 - spacingBetweenCols setter throws exception with too many argument ok 28 - spacingBetweenCols setter accepts undef ok 29 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 30 - setDistanceUnit returns value ok 31 - getDistanceUnit fetches correct value ok 32 - setDistanceUnit throws exception with bad argument ok 33 - getDistanceUnit throws exception with argument ok 34 - setDistanceUnit throws exception with no argument ok 35 - setDistanceUnit throws exception with too many argument ok 36 - setDistanceUnit accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 42 - propertySets set in new() ok 43 - setPropertySets returns correct value ok 44 - getPropertySets fetches correct value ok 45 - addPropertySets returns number of items in list ok 46 - addPropertySets adds correct value ok 47 - setPropertySets throws exception with non-array argument ok 48 - setPropertySets throws exception with bad argument array ok 49 - addPropertySets throws exception with no arguments ok 50 - addPropertySets throws exception with bad array ok 51 - setPropertySets accepts empty array ref ok 52 - getPropertySets throws exception with argument ok 53 - setPropertySets throws exception with no argument ok 54 - setPropertySets throws exception with too many argument ok 55 - setPropertySets accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - propertySets->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok All tests successful. Files=151, Tests=16488, 14 wallclock secs ( 0.58 usr 0.15 sys + 8.27 cusr 1.04 csys = 10.04 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-mage-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Identifiable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/PhysicalBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/MeasuredBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/ImageAcquisition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayTreatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/Transformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataTuples.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ProtocolApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Software.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/SoftwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterizableApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/DesignElementGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/FeatureGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/CompositeGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ReporterGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Unit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/QuantityUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TemperatureUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/ConcentrationUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/MassUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Association.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Base.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Extendable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Describable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Identifiable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::NameValueType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-mage-perl' in '../libbio-mage-perl_20030502.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3022037 and its subdirectories I: Current time: Sun Nov 24 00:57:15 -12 2024 I: pbuilder-time-stamp: 1732453035 Sun Nov 24 12:57:17 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Nov 24 12:57:17 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Nov 24 12:57:17 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 12:57:17 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-I6lV7b' ==================================================================================== Sat Dec 27 19:20:19 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 libbio-mage-perl trixie /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf 20030502.3-6" as arguments. Sat Dec 27 19:20:19 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-fir1XAD5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Dec 27 19:20:19 UTC 2025 I: Downloading source for trixie/libbio-mage-perl=20030502.3-6 Reading package lists... NOTICE: 'libbio-mage-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-mage-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-mage-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 964 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (dsc) [2158 B] Get:2 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (tar) [958 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (diff) [3880 B] Fetched 964 kB in 0s (12.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-mage-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-mage-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-mage-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 964 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (dsc) [2158 B] Get:2 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (tar) [958 kB] Get:3 http://deb.debian.org/debian trixie/main libbio-mage-perl 20030502.3-6 (diff) [3880 B] Fetched 964 kB in 0s (12.6 MB/s) Download complete and in download only mode ============================================================================= Re-Building libbio-mage-perl in trixie on amd64 on infom02-amd64 now. Date: Sat Dec 27 19:20:19 UTC 2025 Date UTC: Sat Dec 27 19:20:19 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_ACBI + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbio-mage-perl = debian-installer -o libbio-mage-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbio-mage-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_ACBI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2 --logfile b2/build.log libbio-mage-perl_20030502.3-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 09:20:19 +14 2025 I: pbuilder-time-stamp: 1766863219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-mage-perl_20030502.3-6.dsc] I: copying [./libbio-mage-perl_20030502.3.orig.tar.gz] I: copying [./libbio-mage-perl_20030502.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Nov 27 10:42:19 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-mage-perl_20030502.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-mage-perl in libbio-mage-perl-20030502.3 dpkg-source: info: unpacking libbio-mage-perl_20030502.3.orig.tar.gz dpkg-source: info: unpacking libbio-mage-perl_20030502.3-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 27 19:20 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=69e335bac27e48de80886b3d6694ea19 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2183355 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_ACBI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2 --logfile b2/build.log libbio-mage-perl_20030502.3-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtie-ixhash-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtie-ixhash-perl; however: Package libtie-ixhash-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtie-ixhash-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 19.8 MB of archives. After unpacking 75.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] Fetched 19.8 MB in 1s (20.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. 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Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes dpkg-buildpackage: info: source package libbio-mage-perl dpkg-buildpackage: info: source version 20030502.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-mage-perl-20030502.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::MAGE Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm cp MAGE.pm blib/lib/Bio/MAGE.pm cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm cp MAGE/ArrayDesign/FeatureGroup.pm blib/lib/Bio/MAGE/ArrayDesign/FeatureGroup.pm cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm cp MAGE/Array/ManufactureLIMSBiomaterial.pm blib/lib/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm cp MAGE/Array/Fiducial.pm blib/lib/Bio/MAGE/Array/Fiducial.pm cp MAGE/Base.pm blib/lib/Bio/MAGE/Base.pm cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm cp MAGE/Array/ArrayManufacture.pm blib/lib/Bio/MAGE/Array/ArrayManufacture.pm cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm cp MAGE/Array/FeatureDefect.pm blib/lib/Bio/MAGE/Array/FeatureDefect.pm cp MAGE/Array/PositionDelta.pm blib/lib/Bio/MAGE/Array/PositionDelta.pm cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm cp MAGE/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData.pm cp MAGE/BioAssay/BioAssayTreatment.pm blib/lib/Bio/MAGE/BioAssay/BioAssayTreatment.pm cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm cp MAGE/BioAssayData/DesignElementDimension.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementDimension.pm cp MAGE/BioAssayData/FeatureDimension.pm blib/lib/Bio/MAGE/BioAssayData/FeatureDimension.pm cp MAGE/BioAssayData/BioDataValues.pm blib/lib/Bio/MAGE/BioAssayData/BioDataValues.pm cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm cp MAGE/BioAssay/BioAssay.pm blib/lib/Bio/MAGE/BioAssay/BioAssay.pm cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm cp MAGE/BioAssayData/BioAssayDimension.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDimension.pm cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm cp MAGE/BioAssayData/DesignElementMapping.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMapping.pm cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm cp MAGE/BioAssayData/QuantitationTypeMap.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm cp MAGE/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial.pm cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm cp MAGE/BioSequence/SequencePosition.pm blib/lib/Bio/MAGE/BioSequence/SequencePosition.pm cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm cp MAGE/Description/ExternalReference.pm blib/lib/Bio/MAGE/Description/ExternalReference.pm cp MAGE/BioMaterial/BioSource.pm blib/lib/Bio/MAGE/BioMaterial/BioSource.pm cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm cp MAGE/Description/OntologyEntry.pm blib/lib/Bio/MAGE/Description/OntologyEntry.pm cp MAGE/DesignElement/CompositeCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/CompositeCompositeMap.pm cp MAGE/Description/Description.pm blib/lib/Bio/MAGE/Description/Description.pm cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm cp MAGE/DesignElement/CompositePosition.pm blib/lib/Bio/MAGE/DesignElement/CompositePosition.pm cp MAGE/Description.pm blib/lib/Bio/MAGE/Description.pm cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm cp MAGE/Experiment.pm blib/lib/Bio/MAGE/Experiment.pm cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm cp MAGE/Experiment/FactorValue.pm blib/lib/Bio/MAGE/Experiment/FactorValue.pm cp MAGE/DesignElement/ReporterPosition.pm blib/lib/Bio/MAGE/DesignElement/ReporterPosition.pm cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm cp MAGE/Experiment/Experiment.pm blib/lib/Bio/MAGE/Experiment/Experiment.pm cp MAGE/Measurement/Measurement.pm blib/lib/Bio/MAGE/Measurement/Measurement.pm cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm cp MAGE/Identifiable.pm blib/lib/Bio/MAGE/Identifiable.pm cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm cp MAGE/Measurement.pm blib/lib/Bio/MAGE/Measurement.pm cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm cp MAGE/DesignElement/Reporter.pm blib/lib/Bio/MAGE/DesignElement/Reporter.pm cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm cp MAGE/Measurement/MassUnit.pm blib/lib/Bio/MAGE/Measurement/MassUnit.pm cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm cp MAGE/QuantitationType/DerivedSignal.pm blib/lib/Bio/MAGE/QuantitationType/DerivedSignal.pm cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm cp MAGE/Protocol/Parameter.pm blib/lib/Bio/MAGE/Protocol/Parameter.pm cp MAGE/QuantitationType/SpecializedQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm cp MAGE/QuantitationType/Failed.pm blib/lib/Bio/MAGE/QuantitationType/Failed.pm cp classes.pm blib/lib/Bio/classes.pm cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm cp MAGE/QuantitationType/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/QuantitationType.pm cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm cp MAGE/Protocol/ProtocolApplication.pm blib/lib/Bio/MAGE/Protocol/ProtocolApplication.pm cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm cp MAGE/Protocol/Protocol.pm blib/lib/Bio/MAGE/Protocol/Protocol.pm cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm cp MAGE/NameValueType.pm blib/lib/Bio/MAGE/NameValueType.pm cp MAGE/QuantitationType/Error.pm blib/lib/Bio/MAGE/QuantitationType/Error.pm cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm cp MAGE/Protocol/SoftwareApplication.pm blib/lib/Bio/MAGE/Protocol/SoftwareApplication.pm cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm cp MAGE/Protocol/HardwareApplication.pm blib/lib/Bio/MAGE/Protocol/HardwareApplication.pm cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/Array.t ........................ 1..170 ok 1 - use Bio::MAGE::Array::Array; ok 2 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - arrayXOrigin new ok 12 - arrayXOrigin getter/setter ok 13 - arrayXOrigin getter throws exception with argument ok 14 - arrayXOrigin setter throws exception with no argument ok 15 - arrayXOrigin setter throws exception with too many argument ok 16 - arrayXOrigin setter accepts undef ok 17 - arrayYOrigin new ok 18 - arrayYOrigin getter/setter ok 19 - arrayYOrigin getter throws exception with argument ok 20 - arrayYOrigin setter throws exception with no argument ok 21 - arrayYOrigin setter throws exception with too many argument ok 22 - arrayYOrigin setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - arrayIdentifier new ok 30 - arrayIdentifier getter/setter ok 31 - arrayIdentifier getter throws exception with argument ok 32 - arrayIdentifier setter throws exception with no argument ok 33 - arrayIdentifier setter throws exception with too many argument ok 34 - arrayIdentifier setter accepts undef ok 35 - originRelativeTo new ok 36 - originRelativeTo getter/setter ok 37 - originRelativeTo getter throws exception with argument ok 38 - originRelativeTo setter throws exception with no argument ok 39 - originRelativeTo setter throws exception with too many argument ok 40 - originRelativeTo setter accepts undef ok 41 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 42 - setArrayGroup returns value ok 43 - getArrayGroup fetches correct value ok 44 - setArrayGroup throws exception with bad argument ok 45 - getArrayGroup throws exception with argument ok 46 - setArrayGroup throws exception with no argument ok 47 - setArrayGroup throws exception with too many argument ok 48 - setArrayGroup accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - arrayGroup->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - arrayGroup->self() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 55 - setArrayDesign returns value ok 56 - getArrayDesign fetches correct value ok 57 - setArrayDesign throws exception with bad argument ok 58 - getArrayDesign throws exception with argument ok 59 - setArrayDesign throws exception with no argument ok 60 - setArrayDesign throws exception with too many argument ok 61 - setArrayDesign accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayDesign->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayDesign->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 68 - setInformation returns value ok 69 - getInformation fetches correct value ok 70 - setInformation throws exception with bad argument ok 71 - getInformation throws exception with argument ok 72 - setInformation throws exception with no argument ok 73 - setInformation throws exception with too many argument ok 74 - setInformation accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - information->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - information->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - descriptions set in new() ok 119 - setDescriptions returns correct value ok 120 - getDescriptions fetches correct value ok 121 - addDescriptions returns number of items in list ok 122 - addDescriptions adds correct value ok 123 - setDescriptions throws exception with non-array argument ok 124 - setDescriptions throws exception with bad argument array ok 125 - addDescriptions throws exception with no arguments ok 126 - addDescriptions throws exception with bad array ok 127 - setDescriptions accepts empty array ref ok 128 - getDescriptions throws exception with argument ok 129 - setDescriptions throws exception with no argument ok 130 - setDescriptions throws exception with too many argument ok 131 - setDescriptions accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - descriptions->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - descriptions->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 138 - setSecurity returns value ok 139 - getSecurity fetches correct value ok 140 - setSecurity throws exception with bad argument ok 141 - getSecurity throws exception with argument ok 142 - setSecurity throws exception with no argument ok 143 - setSecurity throws exception with too many argument ok 144 - setSecurity accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - security->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - security->self() is a valid Bio::MAGE::Association::End ok 150 - arrayManufactureDeviations set in new() ok 151 - setArrayManufactureDeviations returns correct value ok 152 - getArrayManufactureDeviations fetches correct value ok 153 - addArrayManufactureDeviations returns number of items in list ok 154 - addArrayManufactureDeviations adds correct value ok 155 - setArrayManufactureDeviations throws exception with non-array argument ok 156 - setArrayManufactureDeviations throws exception with bad argument array ok 157 - addArrayManufactureDeviations throws exception with no arguments ok 158 - addArrayManufactureDeviations throws exception with bad array ok 159 - setArrayManufactureDeviations accepts empty array ref ok 160 - getArrayManufactureDeviations throws exception with argument ok 161 - setArrayManufactureDeviations throws exception with no argument ok 162 - setArrayManufactureDeviations throws exception with too many argument ok 163 - setArrayManufactureDeviations accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - arrayManufactureDeviations->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - arrayManufactureDeviations->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 170 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok t/Array_package.t ................ 1..33 ok 1 - use Bio::MAGE::Array; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 4 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 5 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 6 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 7 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 8 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 9 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 10 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 11 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 12 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 13 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - arraygroup_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getArrayGroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getArrayGroup_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - array_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getArray_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getArray_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - arraymanufacture_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getArrayManufacture_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getArrayManufacture_list not empty ok t/ArrayDesign.t .................. 1..197 ok 1 - use Bio::MAGE::ArrayDesign::ArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - reporterGroups set in new() ok 49 - setReporterGroups returns correct value ok 50 - getReporterGroups fetches correct value ok 51 - addReporterGroups returns number of items in list ok 52 - addReporterGroups adds correct value ok 53 - setReporterGroups throws exception with non-array argument ok 54 - setReporterGroups throws exception with bad argument array ok 55 - addReporterGroups throws exception with no arguments ok 56 - addReporterGroups throws exception with bad array ok 57 - setReporterGroups accepts empty array ref ok 58 - getReporterGroups throws exception with argument ok 59 - setReporterGroups throws exception with no argument ok 60 - setReporterGroups throws exception with too many argument ok 61 - setReporterGroups accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 67 - featureGroups set in new() ok 68 - setFeatureGroups returns correct value ok 69 - getFeatureGroups fetches correct value ok 70 - addFeatureGroups returns number of items in list ok 71 - addFeatureGroups adds correct value ok 72 - setFeatureGroups throws exception with non-array argument ok 73 - setFeatureGroups throws exception with bad argument array ok 74 - addFeatureGroups throws exception with no arguments ok 75 - addFeatureGroups throws exception with bad array ok 76 - setFeatureGroups accepts empty array ref ok 77 - getFeatureGroups throws exception with argument ok 78 - setFeatureGroups throws exception with no argument ok 79 - setFeatureGroups throws exception with too many argument ok 80 - setFeatureGroups accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 86 - descriptions set in new() ok 87 - setDescriptions returns correct value ok 88 - getDescriptions fetches correct value ok 89 - addDescriptions returns number of items in list ok 90 - addDescriptions adds correct value ok 91 - setDescriptions throws exception with non-array argument ok 92 - setDescriptions throws exception with bad argument array ok 93 - addDescriptions throws exception with no arguments ok 94 - addDescriptions throws exception with bad array ok 95 - setDescriptions accepts empty array ref ok 96 - getDescriptions throws exception with argument ok 97 - setDescriptions throws exception with no argument ok 98 - setDescriptions throws exception with too many argument ok 99 - setDescriptions accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - descriptions->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - descriptions->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 106 - setSecurity returns value ok 107 - getSecurity fetches correct value ok 108 - setSecurity throws exception with bad argument ok 109 - getSecurity throws exception with argument ok 110 - setSecurity throws exception with no argument ok 111 - setSecurity throws exception with too many argument ok 112 - setSecurity accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - security->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - security->self() is a valid Bio::MAGE::Association::End ok 118 - auditTrail set in new() ok 119 - setAuditTrail returns correct value ok 120 - getAuditTrail fetches correct value ok 121 - addAuditTrail returns number of items in list ok 122 - addAuditTrail adds correct value ok 123 - setAuditTrail throws exception with non-array argument ok 124 - setAuditTrail throws exception with bad argument array ok 125 - addAuditTrail throws exception with no arguments ok 126 - addAuditTrail throws exception with bad array ok 127 - setAuditTrail accepts empty array ref ok 128 - getAuditTrail throws exception with argument ok 129 - setAuditTrail throws exception with no argument ok 130 - setAuditTrail throws exception with too many argument ok 131 - setAuditTrail accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 137 - propertySets set in new() ok 138 - setPropertySets returns correct value ok 139 - getPropertySets fetches correct value ok 140 - addPropertySets returns number of items in list ok 141 - addPropertySets adds correct value ok 142 - setPropertySets throws exception with non-array argument ok 143 - setPropertySets throws exception with bad argument array ok 144 - addPropertySets throws exception with no arguments ok 145 - addPropertySets throws exception with bad array ok 146 - setPropertySets accepts empty array ref ok 147 - getPropertySets throws exception with argument ok 148 - setPropertySets throws exception with no argument ok 149 - setPropertySets throws exception with too many argument ok 150 - setPropertySets accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - propertySets->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - propertySets->self() is a valid Bio::MAGE::Association::End ok 156 - compositeGroups set in new() ok 157 - setCompositeGroups returns correct value ok 158 - getCompositeGroups fetches correct value ok 159 - addCompositeGroups returns number of items in list ok 160 - addCompositeGroups adds correct value ok 161 - setCompositeGroups throws exception with non-array argument ok 162 - setCompositeGroups throws exception with bad argument array ok 163 - addCompositeGroups throws exception with no arguments ok 164 - addCompositeGroups throws exception with bad array ok 165 - setCompositeGroups accepts empty array ref ok 166 - getCompositeGroups throws exception with argument ok 167 - setCompositeGroups throws exception with no argument ok 168 - setCompositeGroups throws exception with too many argument ok 169 - setCompositeGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 175 - designProviders set in new() ok 176 - setDesignProviders returns correct value ok 177 - getDesignProviders fetches correct value ok 178 - addDesignProviders returns number of items in list ok 179 - addDesignProviders adds correct value ok 180 - setDesignProviders throws exception with non-array argument ok 181 - setDesignProviders throws exception with bad argument array ok 182 - addDesignProviders throws exception with no arguments ok 183 - addDesignProviders throws exception with bad array ok 184 - setDesignProviders accepts empty array ref ok 185 - getDesignProviders throws exception with argument ok 186 - setDesignProviders throws exception with no argument ok 187 - setDesignProviders throws exception with too many argument ok 188 - setDesignProviders accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - designProviders->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - designProviders->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 195 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 196 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 197 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok t/ArrayDesign_package.t .......... 1..32 ok 1 - use Bio::MAGE::ArrayDesign; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 4 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 5 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 6 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 7 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 8 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 9 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 10 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 11 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 12 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 13 - tagname ok 14 - xml_lists ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - reportergroup_list empty ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - getReporterGroup_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getReporterGroup_list not empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - compositegroup_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeGroup_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getCompositeGroup_list not empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - arraydesign_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getArrayDesign_list empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - getArrayDesign_list not empty ok t/ArrayGroup.t ................... 1..205 ok 1 - use Bio::MAGE::Array::ArrayGroup; ok 2 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 3 - package ok 4 - class_name ok 5 - arraySpacingY new ok 6 - arraySpacingY getter/setter ok 7 - arraySpacingY getter throws exception with argument ok 8 - arraySpacingY setter throws exception with no argument ok 9 - arraySpacingY setter throws exception with too many argument ok 10 - arraySpacingY setter accepts undef ok 11 - numArrays new ok 12 - numArrays getter/setter ok 13 - numArrays getter throws exception with argument ok 14 - numArrays setter throws exception with no argument ok 15 - numArrays setter throws exception with too many argument ok 16 - numArrays setter accepts undef ok 17 - width new ok 18 - width getter/setter ok 19 - width getter throws exception with argument ok 20 - width setter throws exception with no argument ok 21 - width setter throws exception with too many argument ok 22 - width setter accepts undef ok 23 - orientationMarkPosition new ok 24 - orientationMarkPosition getter/setter ok 25 - orientationMarkPosition getter throws exception with argument ok 26 - orientationMarkPosition setter throws exception with no argument ok 27 - orientationMarkPosition setter throws exception with too many argument ok 28 - orientationMarkPosition setter accepts undef ok 29 - orientationMarkPosition setter throws exception with bad argument ok 30 - orientationMarkPosition accepts top ok 31 - orientationMarkPosition accepts bottom ok 32 - orientationMarkPosition accepts left ok 33 - orientationMarkPosition accepts right ok 34 - arraySpacingX new ok 35 - arraySpacingX getter/setter ok 36 - arraySpacingX getter throws exception with argument ok 37 - arraySpacingX setter throws exception with no argument ok 38 - arraySpacingX setter throws exception with too many argument ok 39 - arraySpacingX setter accepts undef ok 40 - name new ok 41 - name getter/setter ok 42 - name getter throws exception with argument ok 43 - name setter throws exception with no argument ok 44 - name setter throws exception with too many argument ok 45 - name setter accepts undef ok 46 - barcode new ok 47 - barcode getter/setter ok 48 - barcode getter throws exception with argument ok 49 - barcode setter throws exception with no argument ok 50 - barcode setter throws exception with too many argument ok 51 - barcode setter accepts undef ok 52 - orientationMark new ok 53 - orientationMark getter/setter ok 54 - orientationMark getter throws exception with argument ok 55 - orientationMark setter throws exception with no argument ok 56 - orientationMark setter throws exception with too many argument ok 57 - orientationMark setter accepts undef ok 58 - identifier new ok 59 - identifier getter/setter ok 60 - identifier getter throws exception with argument ok 61 - identifier setter throws exception with no argument ok 62 - identifier setter throws exception with too many argument ok 63 - identifier setter accepts undef ok 64 - length new ok 65 - length getter/setter ok 66 - length getter throws exception with argument ok 67 - length setter throws exception with no argument ok 68 - length setter throws exception with too many argument ok 69 - length setter accepts undef ok 70 - arrays set in new() ok 71 - setArrays returns correct value ok 72 - getArrays fetches correct value ok 73 - addArrays returns number of items in list ok 74 - addArrays adds correct value ok 75 - setArrays throws exception with non-array argument ok 76 - setArrays throws exception with bad argument array ok 77 - addArrays throws exception with no arguments ok 78 - addArrays throws exception with bad array ok 79 - setArrays accepts empty array ref ok 80 - getArrays throws exception with argument ok 81 - setArrays throws exception with no argument ok 82 - setArrays throws exception with too many argument ok 83 - setArrays accepts undef ok 84 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - arrays->other() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - arrays->self() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 90 - setDistanceUnit returns value ok 91 - getDistanceUnit fetches correct value ok 92 - setDistanceUnit throws exception with bad argument ok 93 - getDistanceUnit throws exception with argument ok 94 - setDistanceUnit throws exception with no argument ok 95 - setDistanceUnit throws exception with too many argument ok 96 - setDistanceUnit accepts undef ok 97 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 102 - descriptions set in new() ok 103 - setDescriptions returns correct value ok 104 - getDescriptions fetches correct value ok 105 - addDescriptions returns number of items in list ok 106 - addDescriptions adds correct value ok 107 - setDescriptions throws exception with non-array argument ok 108 - setDescriptions throws exception with bad argument array ok 109 - addDescriptions throws exception with no arguments ok 110 - addDescriptions throws exception with bad array ok 111 - setDescriptions accepts empty array ref ok 112 - getDescriptions throws exception with argument ok 113 - setDescriptions throws exception with no argument ok 114 - setDescriptions throws exception with too many argument ok 115 - setDescriptions accepts undef ok 116 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->other() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - descriptions->self() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 122 - setSubstrateType returns value ok 123 - getSubstrateType fetches correct value ok 124 - setSubstrateType throws exception with bad argument ok 125 - getSubstrateType throws exception with argument ok 126 - setSubstrateType throws exception with no argument ok 127 - setSubstrateType throws exception with too many argument ok 128 - setSubstrateType accepts undef ok 129 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - substrateType->other() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - substrateType->self() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 135 - setSecurity returns value ok 136 - getSecurity fetches correct value ok 137 - setSecurity throws exception with bad argument ok 138 - getSecurity throws exception with argument ok 139 - setSecurity throws exception with no argument ok 140 - setSecurity throws exception with too many argument ok 141 - setSecurity accepts undef ok 142 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->other() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - security->self() is a valid Bio::MAGE::Association::End ok 147 - auditTrail set in new() ok 148 - setAuditTrail returns correct value ok 149 - getAuditTrail fetches correct value ok 150 - addAuditTrail returns number of items in list ok 151 - addAuditTrail adds correct value ok 152 - setAuditTrail throws exception with non-array argument ok 153 - setAuditTrail throws exception with bad argument array ok 154 - addAuditTrail throws exception with no arguments ok 155 - addAuditTrail throws exception with bad array ok 156 - setAuditTrail accepts empty array ref ok 157 - getAuditTrail throws exception with argument ok 158 - setAuditTrail throws exception with no argument ok 159 - setAuditTrail throws exception with too many argument ok 160 - setAuditTrail accepts undef ok 161 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 165 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 166 - propertySets set in new() ok 167 - setPropertySets returns correct value ok 168 - getPropertySets fetches correct value ok 169 - addPropertySets returns number of items in list ok 170 - addPropertySets adds correct value ok 171 - setPropertySets throws exception with non-array argument ok 172 - setPropertySets throws exception with bad argument array ok 173 - addPropertySets throws exception with no arguments ok 174 - addPropertySets throws exception with bad array ok 175 - setPropertySets accepts empty array ref ok 176 - getPropertySets throws exception with argument ok 177 - setPropertySets throws exception with no argument ok 178 - setPropertySets throws exception with too many argument ok 179 - setPropertySets accepts undef ok 180 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - propertySets->other() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 184 - propertySets->self() is a valid Bio::MAGE::Association::End ok 185 - fiducials set in new() ok 186 - setFiducials returns correct value ok 187 - getFiducials fetches correct value ok 188 - addFiducials returns number of items in list ok 189 - addFiducials adds correct value ok 190 - setFiducials throws exception with non-array argument ok 191 - setFiducials throws exception with bad argument array ok 192 - addFiducials throws exception with no arguments ok 193 - addFiducials throws exception with bad array ok 194 - setFiducials accepts empty array ref ok 195 - getFiducials throws exception with argument ok 196 - setFiducials throws exception with no argument ok 197 - setFiducials throws exception with too many argument ok 198 - setFiducials accepts undef ok 199 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 200 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 201 - fiducials->other() is a valid Bio::MAGE::Association::End ok 202 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 203 - fiducials->self() is a valid Bio::MAGE::Association::End ok 204 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 205 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufacture.t ............. 1..195 ok 1 - use Bio::MAGE::Array::ArrayManufacture; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - tolerance new ok 12 - tolerance getter/setter ok 13 - tolerance getter throws exception with argument ok 14 - tolerance setter throws exception with no argument ok 15 - tolerance setter throws exception with too many argument ok 16 - tolerance setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - manufacturingDate new ok 24 - manufacturingDate getter/setter ok 25 - manufacturingDate getter throws exception with argument ok 26 - manufacturingDate setter throws exception with no argument ok 27 - manufacturingDate setter throws exception with too many argument ok 28 - manufacturingDate setter accepts undef ok 29 - protocolApplications set in new() ok 30 - setProtocolApplications returns correct value ok 31 - getProtocolApplications fetches correct value ok 32 - addProtocolApplications returns number of items in list ok 33 - addProtocolApplications adds correct value ok 34 - setProtocolApplications throws exception with non-array argument ok 35 - setProtocolApplications throws exception with bad argument array ok 36 - addProtocolApplications throws exception with no arguments ok 37 - addProtocolApplications throws exception with bad array ok 38 - setProtocolApplications accepts empty array ref ok 39 - getProtocolApplications throws exception with argument ok 40 - setProtocolApplications throws exception with no argument ok 41 - setProtocolApplications throws exception with too many argument ok 42 - setProtocolApplications accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 48 - arrayManufacturers set in new() ok 49 - setArrayManufacturers returns correct value ok 50 - getArrayManufacturers fetches correct value ok 51 - addArrayManufacturers returns number of items in list ok 52 - addArrayManufacturers adds correct value ok 53 - setArrayManufacturers throws exception with non-array argument ok 54 - setArrayManufacturers throws exception with bad argument array ok 55 - addArrayManufacturers throws exception with no arguments ok 56 - addArrayManufacturers throws exception with bad array ok 57 - setArrayManufacturers accepts empty array ref ok 58 - getArrayManufacturers throws exception with argument ok 59 - setArrayManufacturers throws exception with no argument ok 60 - setArrayManufacturers throws exception with too many argument ok 61 - setArrayManufacturers accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - arrayManufacturers->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - arrayManufacturers->self() is a valid Bio::MAGE::Association::End ok 67 - featureLIMSs set in new() ok 68 - setFeatureLIMSs returns correct value ok 69 - getFeatureLIMSs fetches correct value ok 70 - addFeatureLIMSs returns number of items in list ok 71 - addFeatureLIMSs adds correct value ok 72 - setFeatureLIMSs throws exception with non-array argument ok 73 - setFeatureLIMSs throws exception with bad argument array ok 74 - addFeatureLIMSs throws exception with no arguments ok 75 - addFeatureLIMSs throws exception with bad array ok 76 - setFeatureLIMSs accepts empty array ref ok 77 - getFeatureLIMSs throws exception with argument ok 78 - setFeatureLIMSs throws exception with no argument ok 79 - setFeatureLIMSs throws exception with too many argument ok 80 - setFeatureLIMSs accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureLIMSs->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureLIMSs->self() is a valid Bio::MAGE::Association::End ok 86 - arrays set in new() ok 87 - setArrays returns correct value ok 88 - getArrays fetches correct value ok 89 - addArrays returns number of items in list ok 90 - addArrays adds correct value ok 91 - setArrays throws exception with non-array argument ok 92 - setArrays throws exception with bad argument array ok 93 - addArrays throws exception with no arguments ok 94 - addArrays throws exception with bad array ok 95 - setArrays accepts empty array ref ok 96 - getArrays throws exception with argument ok 97 - setArrays throws exception with no argument ok 98 - setArrays throws exception with too many argument ok 99 - setArrays accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - arrays->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - arrays->self() is a valid Bio::MAGE::Association::End ok 105 - descriptions set in new() ok 106 - setDescriptions returns correct value ok 107 - getDescriptions fetches correct value ok 108 - addDescriptions returns number of items in list ok 109 - addDescriptions adds correct value ok 110 - setDescriptions throws exception with non-array argument ok 111 - setDescriptions throws exception with bad argument array ok 112 - addDescriptions throws exception with no arguments ok 113 - addDescriptions throws exception with bad array ok 114 - setDescriptions accepts empty array ref ok 115 - getDescriptions throws exception with argument ok 116 - setDescriptions throws exception with no argument ok 117 - setDescriptions throws exception with too many argument ok 118 - setDescriptions accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - descriptions->self() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 125 - setSecurity returns value ok 126 - getSecurity fetches correct value ok 127 - setSecurity throws exception with bad argument ok 128 - getSecurity throws exception with argument ok 129 - setSecurity throws exception with no argument ok 130 - setSecurity throws exception with too many argument ok 131 - setSecurity accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - security->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - security->self() is a valid Bio::MAGE::Association::End ok 137 - auditTrail set in new() ok 138 - setAuditTrail returns correct value ok 139 - getAuditTrail fetches correct value ok 140 - addAuditTrail returns number of items in list ok 141 - addAuditTrail adds correct value ok 142 - setAuditTrail throws exception with non-array argument ok 143 - setAuditTrail throws exception with bad argument array ok 144 - addAuditTrail throws exception with no arguments ok 145 - addAuditTrail throws exception with bad array ok 146 - setAuditTrail accepts empty array ref ok 147 - getAuditTrail throws exception with argument ok 148 - setAuditTrail throws exception with no argument ok 149 - setAuditTrail throws exception with too many argument ok 150 - setAuditTrail accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 156 - propertySets set in new() ok 157 - setPropertySets returns correct value ok 158 - getPropertySets fetches correct value ok 159 - addPropertySets returns number of items in list ok 160 - addPropertySets adds correct value ok 161 - setPropertySets throws exception with non-array argument ok 162 - setPropertySets throws exception with bad argument array ok 163 - addPropertySets throws exception with no arguments ok 164 - addPropertySets throws exception with bad array ok 165 - setPropertySets accepts empty array ref ok 166 - getPropertySets throws exception with argument ok 167 - setPropertySets throws exception with no argument ok 168 - setPropertySets throws exception with too many argument ok 169 - setPropertySets accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - propertySets->self() is a valid Bio::MAGE::Association::End ok 175 - qualityControlStatistics set in new() ok 176 - setQualityControlStatistics returns correct value ok 177 - getQualityControlStatistics fetches correct value ok 178 - addQualityControlStatistics returns number of items in list ok 179 - addQualityControlStatistics adds correct value ok 180 - setQualityControlStatistics throws exception with non-array argument ok 181 - setQualityControlStatistics throws exception with bad argument array ok 182 - addQualityControlStatistics throws exception with no arguments ok 183 - addQualityControlStatistics throws exception with bad array ok 184 - setQualityControlStatistics accepts empty array ref ok 185 - getQualityControlStatistics throws exception with argument ok 186 - setQualityControlStatistics throws exception with no argument ok 187 - setQualityControlStatistics throws exception with too many argument ok 188 - setQualityControlStatistics accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 195 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok t/ArrayManufactureDeviation.t .... 1..63 ok 1 - use Bio::MAGE::Array::ArrayManufactureDeviation; ok 2 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 3 - package ok 4 - class_name ok 5 - adjustments set in new() ok 6 - setAdjustments returns correct value ok 7 - getAdjustments fetches correct value ok 8 - addAdjustments returns number of items in list ok 9 - addAdjustments adds correct value ok 10 - setAdjustments throws exception with non-array argument ok 11 - setAdjustments throws exception with bad argument array ok 12 - addAdjustments throws exception with no arguments ok 13 - addAdjustments throws exception with bad array ok 14 - setAdjustments accepts empty array ref ok 15 - getAdjustments throws exception with argument ok 16 - setAdjustments throws exception with no argument ok 17 - setAdjustments throws exception with too many argument ok 18 - setAdjustments accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - adjustments->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - adjustments->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - featureDefects set in new() ok 44 - setFeatureDefects returns correct value ok 45 - getFeatureDefects fetches correct value ok 46 - addFeatureDefects returns number of items in list ok 47 - addFeatureDefects adds correct value ok 48 - setFeatureDefects throws exception with non-array argument ok 49 - setFeatureDefects throws exception with bad argument array ok 50 - addFeatureDefects throws exception with no arguments ok 51 - addFeatureDefects throws exception with bad array ok 52 - setFeatureDefects accepts empty array ref ok 53 - getFeatureDefects throws exception with argument ok 54 - setFeatureDefects throws exception with no argument ok 55 - setFeatureDefects throws exception with too many argument ok 56 - setFeatureDefects accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - featureDefects->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - featureDefects->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok t/Association.t .................. 1..8 ok 1 - CARD_1: testing full path ok 2 - CARD_1: testing import ok 3 - CARD_0_OR_1: testing full path ok 4 - CARD_0_OR_1: testing import ok 5 - CARD_1_TO_N: testing full path ok 6 - CARD_1_TO_N: testing import ok 7 - CARD_0_TO_N: testing full path ok 8 - CARD_0_TO_N: testing import ok t/Audit.t ........................ 1..104 ok 1 - use Bio::MAGE::AuditAndSecurity::Audit; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 3 - package ok 4 - class_name ok 5 - date new ok 6 - date getter/setter ok 7 - date getter throws exception with argument ok 8 - date setter throws exception with no argument ok 9 - date setter throws exception with too many argument ok 10 - date setter accepts undef ok 11 - action new ok 12 - action getter/setter ok 13 - action getter throws exception with argument ok 14 - action setter throws exception with no argument ok 15 - action setter throws exception with too many argument ok 16 - action setter accepts undef ok 17 - action setter throws exception with bad argument ok 18 - action accepts creation ok 19 - action accepts modification ok 20 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 21 - setPerformer returns value ok 22 - getPerformer fetches correct value ok 23 - setPerformer throws exception with bad argument ok 24 - getPerformer throws exception with argument ok 25 - setPerformer throws exception with no argument ok 26 - setPerformer throws exception with too many argument ok 27 - setPerformer accepts undef ok 28 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - performer->other() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 32 - performer->self() is a valid Bio::MAGE::Association::End ok 33 - descriptions set in new() ok 34 - setDescriptions returns correct value ok 35 - getDescriptions fetches correct value ok 36 - addDescriptions returns number of items in list ok 37 - addDescriptions adds correct value ok 38 - setDescriptions throws exception with non-array argument ok 39 - setDescriptions throws exception with bad argument array ok 40 - addDescriptions throws exception with no arguments ok 41 - addDescriptions throws exception with bad array ok 42 - setDescriptions accepts empty array ref ok 43 - getDescriptions throws exception with argument ok 44 - setDescriptions throws exception with no argument ok 45 - setDescriptions throws exception with too many argument ok 46 - setDescriptions accepts undef ok 47 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->other() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - descriptions->self() is a valid Bio::MAGE::Association::End ok 52 - auditTrail set in new() ok 53 - setAuditTrail returns correct value ok 54 - getAuditTrail fetches correct value ok 55 - addAuditTrail returns number of items in list ok 56 - addAuditTrail adds correct value ok 57 - setAuditTrail throws exception with non-array argument ok 58 - setAuditTrail throws exception with bad argument array ok 59 - addAuditTrail throws exception with no arguments ok 60 - addAuditTrail throws exception with bad array ok 61 - setAuditTrail accepts empty array ref ok 62 - getAuditTrail throws exception with argument ok 63 - setAuditTrail throws exception with no argument ok 64 - setAuditTrail throws exception with too many argument ok 65 - setAuditTrail accepts undef ok 66 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 72 - setSecurity returns value ok 73 - getSecurity fetches correct value ok 74 - setSecurity throws exception with bad argument ok 75 - getSecurity throws exception with argument ok 76 - setSecurity throws exception with no argument ok 77 - setSecurity throws exception with too many argument ok 78 - setSecurity accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - security->self() is a valid Bio::MAGE::Association::End ok 84 - propertySets set in new() ok 85 - setPropertySets returns correct value ok 86 - getPropertySets fetches correct value ok 87 - addPropertySets returns number of items in list ok 88 - addPropertySets adds correct value ok 89 - setPropertySets throws exception with non-array argument ok 90 - setPropertySets throws exception with bad argument array ok 91 - addPropertySets throws exception with no arguments ok 92 - addPropertySets throws exception with bad array ok 93 - setPropertySets accepts empty array ref ok 94 - getPropertySets throws exception with argument ok 95 - setPropertySets throws exception with no argument ok 96 - setPropertySets throws exception with too many argument ok 97 - setPropertySets accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - propertySets->self() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 104 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok t/AuditAndSecurity_package.t ..... 1..29 ok 1 - use Bio::MAGE::AuditAndSecurity; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 4 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 5 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 6 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 7 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 8 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 9 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 10 - tagname ok 11 - xml_lists ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - contact_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getContact_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getContact_list not empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - securitygroup_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getSecurityGroup_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getSecurityGroup_list not empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - security_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSecurity_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getSecurity_list not empty ok Attempt to call undefined import method with arguments ("use base qw(Base)") via package "Foo::Bar" (Perhaps you forgot to load the package?) at t/Base.t line 114. t/Base.t ......................... 1..32 ok 1 - use Bio::MAGE::Base; ok 2 - use Foo::Bar; ok 3 - An object of class 'Foo::Bar' isa 'Foo::Bar' ok 4 - Foo::Bar has 2 slots ok 5 - Foo::Bar has one attribute ok 6 - Foo::Bar has one association ok 7 - Foo::Bar has one subclass ok 8 - Foo::Bar has one superclass ok 9 - Foo::Bar class_name ok 10 - 'can set slots in new()' isa 'Foo::Bar' ok 11 - 'can retrieve foo value' isa 'HASH' ok 12 - foo has correct value ok 13 - 'can retrieve bar value' isa 'ARRAY' ok 14 - bar has correct count ok 15 - bar has correct value ok 16 - 'copy constructor works' isa 'Foo::Bar' ok 17 - 'copy constructor can retrieve foo value' isa 'HASH' ok 18 - copy constructor foo has correct value ok 19 - 'copy constructor can retrieve bar value' isa 'ARRAY' ok 20 - copy constructor bar has correct count ok 21 - copy constructor bar has correct value ok 22 - 'can set get/set slots in new()' isa 'Foo::Bar' ok 23 - 'can retrieve bar value' isa 'ARRAY' ok 24 - bar has correct count ok 25 - bar has correct value ok 26 - 'can set association/attribute slots in new()' isa 'Foo::Bar' ok 27 - attr1 has correct value ok 28 - assoc1 has correct value ok 29 - get_slot works ok 30 - get_slots works ok 31 - set_slot works ok 32 - set_slots works ok t/BibliographicReference.t ....... 1..174 ok 1 - use Bio::MAGE::BQS::BibliographicReference; ok 2 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 3 - package ok 4 - class_name ok 5 - authors new ok 6 - authors getter/setter ok 7 - authors getter throws exception with argument ok 8 - authors setter throws exception with no argument ok 9 - authors setter throws exception with too many argument ok 10 - authors setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - volume new ok 18 - volume getter/setter ok 19 - volume getter throws exception with argument ok 20 - volume setter throws exception with no argument ok 21 - volume setter throws exception with too many argument ok 22 - volume setter accepts undef ok 23 - issue new ok 24 - issue getter/setter ok 25 - issue getter throws exception with argument ok 26 - issue setter throws exception with no argument ok 27 - issue setter throws exception with too many argument ok 28 - issue setter accepts undef ok 29 - editor new ok 30 - editor getter/setter ok 31 - editor getter throws exception with argument ok 32 - editor setter throws exception with no argument ok 33 - editor setter throws exception with too many argument ok 34 - editor setter accepts undef ok 35 - title new ok 36 - title getter/setter ok 37 - title getter throws exception with argument ok 38 - title setter throws exception with no argument ok 39 - title setter throws exception with too many argument ok 40 - title setter accepts undef ok 41 - publication new ok 42 - publication getter/setter ok 43 - publication getter throws exception with argument ok 44 - publication setter throws exception with no argument ok 45 - publication setter throws exception with too many argument ok 46 - publication setter accepts undef ok 47 - publisher new ok 48 - publisher getter/setter ok 49 - publisher getter throws exception with argument ok 50 - publisher setter throws exception with no argument ok 51 - publisher setter throws exception with too many argument ok 52 - publisher setter accepts undef ok 53 - year new ok 54 - year getter/setter ok 55 - year getter throws exception with argument ok 56 - year setter throws exception with no argument ok 57 - year setter throws exception with too many argument ok 58 - year setter accepts undef ok 59 - pages new ok 60 - pages getter/setter ok 61 - pages getter throws exception with argument ok 62 - pages setter throws exception with no argument ok 63 - pages setter throws exception with too many argument ok 64 - pages setter accepts undef ok 65 - parameters set in new() ok 66 - setParameters returns correct value ok 67 - getParameters fetches correct value ok 68 - addParameters returns number of items in list ok 69 - addParameters adds correct value ok 70 - setParameters throws exception with non-array argument ok 71 - setParameters throws exception with bad argument array ok 72 - addParameters throws exception with no arguments ok 73 - addParameters throws exception with bad array ok 74 - setParameters accepts empty array ref ok 75 - getParameters throws exception with argument ok 76 - setParameters throws exception with no argument ok 77 - setParameters throws exception with too many argument ok 78 - setParameters accepts undef ok 79 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - parameters->other() is a valid Bio::MAGE::Association::End ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - parameters->self() is a valid Bio::MAGE::Association::End ok 84 - accessions set in new() ok 85 - setAccessions returns correct value ok 86 - getAccessions fetches correct value ok 87 - addAccessions returns number of items in list ok 88 - addAccessions adds correct value ok 89 - setAccessions throws exception with non-array argument ok 90 - setAccessions throws exception with bad argument array ok 91 - addAccessions throws exception with no arguments ok 92 - addAccessions throws exception with bad array ok 93 - setAccessions accepts empty array ref ok 94 - getAccessions throws exception with argument ok 95 - setAccessions throws exception with no argument ok 96 - setAccessions throws exception with too many argument ok 97 - setAccessions accepts undef ok 98 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - accessions->other() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - accessions->self() is a valid Bio::MAGE::Association::End ok 103 - descriptions set in new() ok 104 - setDescriptions returns correct value ok 105 - getDescriptions fetches correct value ok 106 - addDescriptions returns number of items in list ok 107 - addDescriptions adds correct value ok 108 - setDescriptions throws exception with non-array argument ok 109 - setDescriptions throws exception with bad argument array ok 110 - addDescriptions throws exception with no arguments ok 111 - addDescriptions throws exception with bad array ok 112 - setDescriptions accepts empty array ref ok 113 - getDescriptions throws exception with argument ok 114 - setDescriptions throws exception with no argument ok 115 - setDescriptions throws exception with too many argument ok 116 - setDescriptions accepts undef ok 117 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - descriptions->other() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - descriptions->self() is a valid Bio::MAGE::Association::End ok 122 - auditTrail set in new() ok 123 - setAuditTrail returns correct value ok 124 - getAuditTrail fetches correct value ok 125 - addAuditTrail returns number of items in list ok 126 - addAuditTrail adds correct value ok 127 - setAuditTrail throws exception with non-array argument ok 128 - setAuditTrail throws exception with bad argument array ok 129 - addAuditTrail throws exception with no arguments ok 130 - addAuditTrail throws exception with bad array ok 131 - setAuditTrail accepts empty array ref ok 132 - getAuditTrail throws exception with argument ok 133 - setAuditTrail throws exception with no argument ok 134 - setAuditTrail throws exception with too many argument ok 135 - setAuditTrail accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 142 - setSecurity returns value ok 143 - getSecurity fetches correct value ok 144 - setSecurity throws exception with bad argument ok 145 - getSecurity throws exception with argument ok 146 - setSecurity throws exception with no argument ok 147 - setSecurity throws exception with too many argument ok 148 - setSecurity accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - security->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - security->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 174 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok t/BioAssay.t ..................... 1..132 ok 1 - use Bio::MAGE::BioAssay::BioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssayFactorValues set in new() ok 18 - setBioAssayFactorValues returns correct value ok 19 - getBioAssayFactorValues fetches correct value ok 20 - addBioAssayFactorValues returns number of items in list ok 21 - addBioAssayFactorValues adds correct value ok 22 - setBioAssayFactorValues throws exception with non-array argument ok 23 - setBioAssayFactorValues throws exception with bad argument array ok 24 - addBioAssayFactorValues throws exception with no arguments ok 25 - addBioAssayFactorValues throws exception with bad array ok 26 - setBioAssayFactorValues accepts empty array ref ok 27 - getBioAssayFactorValues throws exception with argument ok 28 - setBioAssayFactorValues throws exception with no argument ok 29 - setBioAssayFactorValues throws exception with too many argument ok 30 - setBioAssayFactorValues accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 36 - channels set in new() ok 37 - setChannels returns correct value ok 38 - getChannels fetches correct value ok 39 - addChannels returns number of items in list ok 40 - addChannels adds correct value ok 41 - setChannels throws exception with non-array argument ok 42 - setChannels throws exception with bad argument array ok 43 - addChannels throws exception with no arguments ok 44 - addChannels throws exception with bad array ok 45 - setChannels accepts empty array ref ok 46 - getChannels throws exception with argument ok 47 - setChannels throws exception with no argument ok 48 - setChannels throws exception with too many argument ok 49 - setChannels accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - channels->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - channels->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 126 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 127 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 128 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 129 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 130 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 131 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 132 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok t/BioAssay_package.t ............. 1..28 ok 1 - use Bio::MAGE::BioAssay; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 4 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 5 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 6 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 7 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 8 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 9 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 10 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 11 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 12 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 13 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 14 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 15 - tagname ok 16 - xml_lists ok 17 - A reference of type 'ARRAY' isa 'ARRAY' ok 18 - channel_list empty ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - getChannel_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getChannel_list not empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - bioassay_list empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - getBioAssay_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getBioAssay_list not empty ok t/BioAssayCreation.t ............. 1..154 ok 1 - use Bio::MAGE::BioAssay::BioAssayCreation; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 153 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 154 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioAssayData.t ................. 1..163 ok 1 - use Bio::MAGE::BioAssayData::BioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 133 - setBioDataValues returns value ok 134 - getBioDataValues fetches correct value ok 135 - setBioDataValues throws exception with bad argument ok 136 - getBioDataValues throws exception with argument ok 137 - setBioDataValues throws exception with no argument ok 138 - setBioDataValues throws exception with too many argument ok 139 - setBioDataValues accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 146 - setQuantitationTypeDimension returns value ok 147 - getQuantitationTypeDimension fetches correct value ok 148 - setQuantitationTypeDimension throws exception with bad argument ok 149 - getQuantitationTypeDimension throws exception with argument ok 150 - setQuantitationTypeDimension throws exception with no argument ok 151 - setQuantitationTypeDimension throws exception with too many argument ok 152 - setQuantitationTypeDimension accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 160 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 161 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 162 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 163 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok t/BioAssayData_package.t ......... 1..61 ok 1 - use Bio::MAGE::BioAssayData; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 4 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 5 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 6 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 7 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 8 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 9 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 10 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 11 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 12 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 13 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 14 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 15 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 16 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 19 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 20 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 21 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 22 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 23 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 24 - tagname ok 25 - xml_lists ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - bioassaydimension_list empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - getBioAssayDimension_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getBioAssayDimension_list not empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - designelementdimension_list empty ok 34 - A reference of type 'ARRAY' isa 'ARRAY' ok 35 - getDesignElementDimension_list empty ok 36 - A reference of type 'ARRAY' isa 'ARRAY' ok 37 - getDesignElementDimension_list not empty ok 38 - A reference of type 'ARRAY' isa 'ARRAY' ok 39 - quantitationtypedimension_list empty ok 40 - A reference of type 'ARRAY' isa 'ARRAY' ok 41 - getQuantitationTypeDimension_list empty ok 42 - A reference of type 'ARRAY' isa 'ARRAY' ok 43 - getQuantitationTypeDimension_list not empty ok 44 - A reference of type 'ARRAY' isa 'ARRAY' ok 45 - bioassaymap_list empty ok 46 - A reference of type 'ARRAY' isa 'ARRAY' ok 47 - getBioAssayMap_list empty ok 48 - A reference of type 'ARRAY' isa 'ARRAY' ok 49 - getBioAssayMap_list not empty ok 50 - A reference of type 'ARRAY' isa 'ARRAY' ok 51 - quantitationtypemap_list empty ok 52 - A reference of type 'ARRAY' isa 'ARRAY' ok 53 - getQuantitationTypeMap_list empty ok 54 - A reference of type 'ARRAY' isa 'ARRAY' ok 55 - getQuantitationTypeMap_list not empty ok 56 - A reference of type 'ARRAY' isa 'ARRAY' ok 57 - bioassaydata_list empty ok 58 - A reference of type 'ARRAY' isa 'ARRAY' ok 59 - getBioAssayData_list empty ok 60 - A reference of type 'ARRAY' isa 'ARRAY' ok 61 - getBioAssayData_list not empty ok t/BioAssayDataCluster.t .......... 1..120 ok 1 - use Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - nodes set in new() ok 69 - setNodes returns correct value ok 70 - getNodes fetches correct value ok 71 - addNodes returns number of items in list ok 72 - addNodes adds correct value ok 73 - setNodes throws exception with non-array argument ok 74 - setNodes throws exception with bad argument array ok 75 - addNodes throws exception with no arguments ok 76 - addNodes throws exception with bad array ok 77 - setNodes accepts empty array ref ok 78 - getNodes throws exception with argument ok 79 - setNodes throws exception with no argument ok 80 - setNodes throws exception with too many argument ok 81 - setNodes accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - nodes->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - nodes->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 107 - setClusterBioAssayData returns value ok 108 - getClusterBioAssayData fetches correct value ok 109 - setClusterBioAssayData throws exception with bad argument ok 110 - getClusterBioAssayData throws exception with argument ok 111 - setClusterBioAssayData throws exception with no argument ok 112 - setClusterBioAssayData throws exception with too many argument ok 113 - setClusterBioAssayData accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - clusterBioAssayData->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - clusterBioAssayData->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 120 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok t/BioAssayDatum.t ................ 1..70 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDatum; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 12 - setQuantitationType returns value ok 13 - getQuantitationType fetches correct value ok 14 - setQuantitationType throws exception with bad argument ok 15 - getQuantitationType throws exception with argument ok 16 - setQuantitationType throws exception with no argument ok 17 - setQuantitationType throws exception with too many argument ok 18 - setQuantitationType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - quantitationType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - quantitationType->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 25 - setBioAssay returns value ok 26 - getBioAssay fetches correct value ok 27 - setBioAssay throws exception with bad argument ok 28 - getBioAssay throws exception with argument ok 29 - setBioAssay throws exception with no argument ok 30 - setBioAssay throws exception with too many argument ok 31 - setBioAssay accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - bioAssay->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - bioAssay->self() is a valid Bio::MAGE::Association::End ok 37 - propertySets set in new() ok 38 - setPropertySets returns correct value ok 39 - getPropertySets fetches correct value ok 40 - addPropertySets returns number of items in list ok 41 - addPropertySets adds correct value ok 42 - setPropertySets throws exception with non-array argument ok 43 - setPropertySets throws exception with bad argument array ok 44 - addPropertySets throws exception with no arguments ok 45 - addPropertySets throws exception with bad array ok 46 - setPropertySets accepts empty array ref ok 47 - getPropertySets throws exception with argument ok 48 - setPropertySets throws exception with no argument ok 49 - setPropertySets throws exception with too many argument ok 50 - setPropertySets accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - propertySets->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - propertySets->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 57 - setDesignElement returns value ok 58 - getDesignElement fetches correct value ok 59 - setDesignElement throws exception with bad argument ok 60 - getDesignElement throws exception with argument ok 61 - setDesignElement throws exception with no argument ok 62 - setDesignElement throws exception with too many argument ok 63 - setDesignElement accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - designElement->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - designElement->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok t/BioAssayDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::BioAssayDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - bioAssays set in new() ok 18 - setBioAssays returns correct value ok 19 - getBioAssays fetches correct value ok 20 - addBioAssays returns number of items in list ok 21 - addBioAssays adds correct value ok 22 - setBioAssays throws exception with non-array argument ok 23 - setBioAssays throws exception with bad argument array ok 24 - addBioAssays throws exception with no arguments ok 25 - addBioAssays throws exception with bad array ok 26 - setBioAssays accepts empty array ref ok 27 - getBioAssays throws exception with argument ok 28 - setBioAssays throws exception with no argument ok 29 - setBioAssays throws exception with too many argument ok 30 - setBioAssays accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok t/BioAssayMap.t .................. 1..139 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 56 - setBioAssayMapTarget returns value ok 57 - getBioAssayMapTarget fetches correct value ok 58 - setBioAssayMapTarget throws exception with bad argument ok 59 - getBioAssayMapTarget throws exception with argument ok 60 - setBioAssayMapTarget throws exception with no argument ok 61 - setBioAssayMapTarget throws exception with too many argument ok 62 - setBioAssayMapTarget accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bioAssayMapTarget->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bioAssayMapTarget->self() is a valid Bio::MAGE::Association::End ok 68 - sourceBioAssays set in new() ok 69 - setSourceBioAssays returns correct value ok 70 - getSourceBioAssays fetches correct value ok 71 - addSourceBioAssays returns number of items in list ok 72 - addSourceBioAssays adds correct value ok 73 - setSourceBioAssays throws exception with non-array argument ok 74 - setSourceBioAssays throws exception with bad argument array ok 75 - addSourceBioAssays throws exception with no arguments ok 76 - addSourceBioAssays throws exception with bad array ok 77 - setSourceBioAssays accepts empty array ref ok 78 - getSourceBioAssays throws exception with argument ok 79 - setSourceBioAssays throws exception with no argument ok 80 - setSourceBioAssays throws exception with too many argument ok 81 - setSourceBioAssays accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - sourceBioAssays->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - sourceBioAssays->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok t/BioAssayMapping.t .............. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioAssayMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - bioAssayMaps set in new() ok 25 - setBioAssayMaps returns correct value ok 26 - getBioAssayMaps fetches correct value ok 27 - addBioAssayMaps returns number of items in list ok 28 - addBioAssayMaps adds correct value ok 29 - setBioAssayMaps throws exception with non-array argument ok 30 - setBioAssayMaps throws exception with bad argument array ok 31 - addBioAssayMaps throws exception with no arguments ok 32 - addBioAssayMaps throws exception with bad array ok 33 - setBioAssayMaps accepts empty array ref ok 34 - getBioAssayMaps throws exception with argument ok 35 - setBioAssayMaps throws exception with no argument ok 36 - setBioAssayMaps throws exception with too many argument ok 37 - setBioAssayMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok t/BioAssayTreatment.t ............ 1..135 ok 1 - use Bio::MAGE::BioAssay::BioAssayTreatment; ok 2 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 37 - setTarget returns value ok 38 - getTarget fetches correct value ok 39 - setTarget throws exception with bad argument ok 40 - getTarget throws exception with argument ok 41 - setTarget throws exception with no argument ok 42 - setTarget throws exception with too many argument ok 43 - setTarget accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - target->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - target->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 50 - setPhysicalBioAssay returns value ok 51 - getPhysicalBioAssay fetches correct value ok 52 - setPhysicalBioAssay throws exception with bad argument ok 53 - getPhysicalBioAssay throws exception with argument ok 54 - setPhysicalBioAssay throws exception with no argument ok 55 - setPhysicalBioAssay throws exception with too many argument ok 56 - setPhysicalBioAssay accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 133 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 134 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 135 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/BioDataCube.t .................. 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataCube; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 3 - package ok 4 - class_name ok 5 - cube new ok 6 - cube getter/setter ok 7 - cube getter throws exception with argument ok 8 - cube setter throws exception with no argument ok 9 - cube setter throws exception with too many argument ok 10 - cube setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - order setter throws exception with bad argument ok 18 - order accepts BDQ ok 19 - order accepts BQD ok 20 - order accepts DBQ ok 21 - order accepts DQB ok 22 - order accepts QBD ok 23 - order accepts QDB ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataTuples.t ................ 1..44 ok 1 - use Bio::MAGE::BioAssayData::BioDataTuples; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 3 - package ok 4 - class_name ok 5 - bioAssayTupleData set in new() ok 6 - setBioAssayTupleData returns correct value ok 7 - getBioAssayTupleData fetches correct value ok 8 - addBioAssayTupleData returns number of items in list ok 9 - addBioAssayTupleData adds correct value ok 10 - setBioAssayTupleData throws exception with non-array argument ok 11 - setBioAssayTupleData throws exception with bad argument array ok 12 - addBioAssayTupleData throws exception with no arguments ok 13 - addBioAssayTupleData throws exception with bad array ok 14 - setBioAssayTupleData accepts empty array ref ok 15 - getBioAssayTupleData throws exception with argument ok 16 - setBioAssayTupleData throws exception with no argument ok 17 - setBioAssayTupleData throws exception with too many argument ok 18 - setBioAssayTupleData accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - bioAssayTupleData->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - bioAssayTupleData->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 44 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok t/BioDataValues.t ................ 1..29 ok 1 - use Bio::MAGE::BioAssayData::BioDataValues; ok 2 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataCube' ok 25 - An object of class 'Bio::MAGE::BioAssayData::BioDataCube' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 26 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataTuples' ok 27 - An object of class 'Bio::MAGE::BioAssayData::BioDataTuples' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 28 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 29 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok t/BioEvent.t ..................... 1..119 ok 1 - use Bio::MAGE::BioEvent::BioEvent; ok 2 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 107 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 108 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 109 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 110 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 111 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok 112 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 113 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok 114 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 115 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok 116 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 117 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok t/BioEvent_package.t ............. 1..7 ok 1 - use Bio::MAGE::BioEvent; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 4 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 5 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 6 - tagname ok 7 - xml_lists ok t/BioMaterial.t .................. 1..164 ok 1 - use Bio::MAGE::BioMaterial::BioMaterial; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setMaterialType returns value ok 146 - getMaterialType fetches correct value ok 147 - setMaterialType throws exception with bad argument ok 148 - getMaterialType throws exception with argument ok 149 - setMaterialType throws exception with no argument ok 150 - setMaterialType throws exception with too many argument ok 151 - setMaterialType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - materialType->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - materialType->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 158 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 159 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 160 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 161 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 162 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 163 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 164 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok t/BioMaterial_package.t .......... 1..25 ok 1 - use Bio::MAGE::BioMaterial; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 4 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 5 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 6 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 7 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 8 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 9 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 10 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 11 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 12 - tagname ok 13 - xml_lists ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - compound_list empty ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - getCompound_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getCompound_list not empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - biomaterial_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getBioMaterial_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getBioMaterial_list not empty ok t/BioMaterialMeasurement.t ....... 1..51 ok 1 - use Bio::MAGE::BioMaterial::BioMaterialMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 6 - setBioMaterial returns value ok 7 - getBioMaterial fetches correct value ok 8 - setBioMaterial throws exception with bad argument ok 9 - getBioMaterial throws exception with argument ok 10 - setBioMaterial throws exception with no argument ok 11 - setBioMaterial throws exception with too many argument ok 12 - setBioMaterial accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 19 - setMeasurement returns value ok 20 - getMeasurement fetches correct value ok 21 - setMeasurement throws exception with bad argument ok 22 - getMeasurement throws exception with argument ok 23 - setMeasurement throws exception with no argument ok 24 - setMeasurement throws exception with too many argument ok 25 - setMeasurement accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - measurement->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - measurement->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok t/BioSample.t .................... 1..171 ok 1 - use Bio::MAGE::BioMaterial::BioSample; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioSample' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 158 - setMaterialType returns value ok 159 - getMaterialType fetches correct value ok 160 - setMaterialType throws exception with bad argument ok 161 - getMaterialType throws exception with argument ok 162 - setMaterialType throws exception with no argument ok 163 - setMaterialType throws exception with too many argument ok 164 - setMaterialType accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - materialType->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - materialType->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 171 - An object of class 'Bio::MAGE::BioMaterial::BioSample' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BioSequence.t .................. 1..208 ok 1 - use Bio::MAGE::BioSequence::BioSequence; ok 2 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 3 - package ok 4 - class_name ok 5 - length new ok 6 - length getter/setter ok 7 - length getter throws exception with argument ok 8 - length setter throws exception with no argument ok 9 - length setter throws exception with too many argument ok 10 - length setter accepts undef ok 11 - isApproximateLength new ok 12 - isApproximateLength getter/setter ok 13 - isApproximateLength getter throws exception with argument ok 14 - isApproximateLength setter throws exception with no argument ok 15 - isApproximateLength setter throws exception with too many argument ok 16 - isApproximateLength setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - sequence new ok 24 - sequence getter/setter ok 25 - sequence getter throws exception with argument ok 26 - sequence setter throws exception with no argument ok 27 - sequence setter throws exception with too many argument ok 28 - sequence setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - isCircular new ok 36 - isCircular getter/setter ok 37 - isCircular getter throws exception with argument ok 38 - isCircular setter throws exception with no argument ok 39 - isCircular setter throws exception with too many argument ok 40 - isCircular setter accepts undef ok 41 - sequenceDatabases set in new() ok 42 - setSequenceDatabases returns correct value ok 43 - getSequenceDatabases fetches correct value ok 44 - addSequenceDatabases returns number of items in list ok 45 - addSequenceDatabases adds correct value ok 46 - setSequenceDatabases throws exception with non-array argument ok 47 - setSequenceDatabases throws exception with bad argument array ok 48 - addSequenceDatabases throws exception with no arguments ok 49 - addSequenceDatabases throws exception with bad array ok 50 - setSequenceDatabases accepts empty array ref ok 51 - getSequenceDatabases throws exception with argument ok 52 - setSequenceDatabases throws exception with no argument ok 53 - setSequenceDatabases throws exception with too many argument ok 54 - setSequenceDatabases accepts undef ok 55 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 56 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 57 - sequenceDatabases->other() is a valid Bio::MAGE::Association::End ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - sequenceDatabases->self() is a valid Bio::MAGE::Association::End ok 60 - auditTrail set in new() ok 61 - setAuditTrail returns correct value ok 62 - getAuditTrail fetches correct value ok 63 - addAuditTrail returns number of items in list ok 64 - addAuditTrail adds correct value ok 65 - setAuditTrail throws exception with non-array argument ok 66 - setAuditTrail throws exception with bad argument array ok 67 - addAuditTrail throws exception with no arguments ok 68 - addAuditTrail throws exception with bad array ok 69 - setAuditTrail accepts empty array ref ok 70 - getAuditTrail throws exception with argument ok 71 - setAuditTrail throws exception with no argument ok 72 - setAuditTrail throws exception with too many argument ok 73 - setAuditTrail accepts undef ok 74 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 75 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 76 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 80 - setPolymerType returns value ok 81 - getPolymerType fetches correct value ok 82 - setPolymerType throws exception with bad argument ok 83 - getPolymerType throws exception with argument ok 84 - setPolymerType throws exception with no argument ok 85 - setPolymerType throws exception with too many argument ok 86 - setPolymerType accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - polymerType->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - polymerType->self() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 93 - setSpecies returns value ok 94 - getSpecies fetches correct value ok 95 - setSpecies throws exception with bad argument ok 96 - getSpecies throws exception with argument ok 97 - setSpecies throws exception with no argument ok 98 - setSpecies throws exception with too many argument ok 99 - setSpecies accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - species->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - species->self() is a valid Bio::MAGE::Association::End ok 105 - propertySets set in new() ok 106 - setPropertySets returns correct value ok 107 - getPropertySets fetches correct value ok 108 - addPropertySets returns number of items in list ok 109 - addPropertySets adds correct value ok 110 - setPropertySets throws exception with non-array argument ok 111 - setPropertySets throws exception with bad argument array ok 112 - addPropertySets throws exception with no arguments ok 113 - addPropertySets throws exception with bad array ok 114 - setPropertySets accepts empty array ref ok 115 - getPropertySets throws exception with argument ok 116 - setPropertySets throws exception with no argument ok 117 - setPropertySets throws exception with too many argument ok 118 - setPropertySets accepts undef ok 119 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 120 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 121 - propertySets->other() is a valid Bio::MAGE::Association::End ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->self() is a valid Bio::MAGE::Association::End ok 124 - ontologyEntries set in new() ok 125 - setOntologyEntries returns correct value ok 126 - getOntologyEntries fetches correct value ok 127 - addOntologyEntries returns number of items in list ok 128 - addOntologyEntries adds correct value ok 129 - setOntologyEntries throws exception with non-array argument ok 130 - setOntologyEntries throws exception with bad argument array ok 131 - addOntologyEntries throws exception with no arguments ok 132 - addOntologyEntries throws exception with bad array ok 133 - setOntologyEntries accepts empty array ref ok 134 - getOntologyEntries throws exception with argument ok 135 - setOntologyEntries throws exception with no argument ok 136 - setOntologyEntries throws exception with too many argument ok 137 - setOntologyEntries accepts undef ok 138 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - ontologyEntries->other() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - ontologyEntries->self() is a valid Bio::MAGE::Association::End ok 143 - descriptions set in new() ok 144 - setDescriptions returns correct value ok 145 - getDescriptions fetches correct value ok 146 - addDescriptions returns number of items in list ok 147 - addDescriptions adds correct value ok 148 - setDescriptions throws exception with non-array argument ok 149 - setDescriptions throws exception with bad argument array ok 150 - addDescriptions throws exception with no arguments ok 151 - addDescriptions throws exception with bad array ok 152 - setDescriptions accepts empty array ref ok 153 - getDescriptions throws exception with argument ok 154 - setDescriptions throws exception with no argument ok 155 - setDescriptions throws exception with too many argument ok 156 - setDescriptions accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - descriptions->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - descriptions->self() is a valid Bio::MAGE::Association::End ok 162 - seqFeatures set in new() ok 163 - setSeqFeatures returns correct value ok 164 - getSeqFeatures fetches correct value ok 165 - addSeqFeatures returns number of items in list ok 166 - addSeqFeatures adds correct value ok 167 - setSeqFeatures throws exception with non-array argument ok 168 - setSeqFeatures throws exception with bad argument array ok 169 - addSeqFeatures throws exception with no arguments ok 170 - addSeqFeatures throws exception with bad array ok 171 - setSeqFeatures accepts empty array ref ok 172 - getSeqFeatures throws exception with argument ok 173 - setSeqFeatures throws exception with no argument ok 174 - setSeqFeatures throws exception with too many argument ok 175 - setSeqFeatures accepts undef ok 176 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 177 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 178 - seqFeatures->other() is a valid Bio::MAGE::Association::End ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - seqFeatures->self() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 182 - setSecurity returns value ok 183 - getSecurity fetches correct value ok 184 - setSecurity throws exception with bad argument ok 185 - getSecurity throws exception with argument ok 186 - setSecurity throws exception with no argument ok 187 - setSecurity throws exception with too many argument ok 188 - setSecurity accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - security->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - security->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 195 - setType returns value ok 196 - getType fetches correct value ok 197 - setType throws exception with bad argument ok 198 - getType throws exception with argument ok 199 - setType throws exception with no argument ok 200 - setType throws exception with too many argument ok 201 - setType accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - type->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - type->self() is a valid Bio::MAGE::Association::End ok 207 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 208 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok t/BioSequence_package.t .......... 1..15 ok 1 - use Bio::MAGE::BioSequence; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 4 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 5 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 6 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 7 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - biosequence_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioSequence_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioSequence_list not empty ok t/BioSource.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::BioSource; ok 2 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioSource' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceContact set in new() ok 18 - setSourceContact returns correct value ok 19 - getSourceContact fetches correct value ok 20 - addSourceContact returns number of items in list ok 21 - addSourceContact adds correct value ok 22 - setSourceContact throws exception with non-array argument ok 23 - setSourceContact throws exception with bad argument array ok 24 - addSourceContact throws exception with no arguments ok 25 - addSourceContact throws exception with bad array ok 26 - setSourceContact accepts empty array ref ok 27 - getSourceContact throws exception with argument ok 28 - setSourceContact throws exception with no argument ok 29 - setSourceContact throws exception with too many argument ok 30 - setSourceContact accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceContact->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceContact->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - qualityControlStatistics set in new() ok 75 - setQualityControlStatistics returns correct value ok 76 - getQualityControlStatistics fetches correct value ok 77 - addQualityControlStatistics returns number of items in list ok 78 - addQualityControlStatistics adds correct value ok 79 - setQualityControlStatistics throws exception with non-array argument ok 80 - setQualityControlStatistics throws exception with bad argument array ok 81 - addQualityControlStatistics throws exception with no arguments ok 82 - addQualityControlStatistics throws exception with bad array ok 83 - setQualityControlStatistics accepts empty array ref ok 84 - getQualityControlStatistics throws exception with argument ok 85 - setQualityControlStatistics throws exception with no argument ok 86 - setQualityControlStatistics throws exception with too many argument ok 87 - setQualityControlStatistics accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - characteristics set in new() ok 113 - setCharacteristics returns correct value ok 114 - getCharacteristics fetches correct value ok 115 - addCharacteristics returns number of items in list ok 116 - addCharacteristics adds correct value ok 117 - setCharacteristics throws exception with non-array argument ok 118 - setCharacteristics throws exception with bad argument array ok 119 - addCharacteristics throws exception with no arguments ok 120 - addCharacteristics throws exception with bad array ok 121 - setCharacteristics accepts empty array ref ok 122 - getCharacteristics throws exception with argument ok 123 - setCharacteristics throws exception with no argument ok 124 - setCharacteristics throws exception with too many argument ok 125 - setCharacteristics accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - characteristics->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - characteristics->self() is a valid Bio::MAGE::Association::End ok 131 - treatments set in new() ok 132 - setTreatments returns correct value ok 133 - getTreatments fetches correct value ok 134 - addTreatments returns number of items in list ok 135 - addTreatments adds correct value ok 136 - setTreatments throws exception with non-array argument ok 137 - setTreatments throws exception with bad argument array ok 138 - addTreatments throws exception with no arguments ok 139 - addTreatments throws exception with bad array ok 140 - setTreatments accepts empty array ref ok 141 - getTreatments throws exception with argument ok 142 - setTreatments throws exception with no argument ok 143 - setTreatments throws exception with too many argument ok 144 - setTreatments accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - treatments->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - treatments->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::BioSource' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/BQS_package.t .................. 1..6 ok 1 - use Bio::MAGE::BQS; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 4 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 5 - tagname ok 6 - xml_lists ok t/Channel.t ...................... 1..107 ok 1 - use Bio::MAGE::BioAssay::Channel; ok 2 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - labels set in new() ok 88 - setLabels returns correct value ok 89 - getLabels fetches correct value ok 90 - addLabels returns number of items in list ok 91 - addLabels adds correct value ok 92 - setLabels throws exception with non-array argument ok 93 - setLabels throws exception with bad argument array ok 94 - addLabels throws exception with no arguments ok 95 - addLabels throws exception with bad array ok 96 - setLabels accepts empty array ref ok 97 - getLabels throws exception with argument ok 98 - setLabels throws exception with no argument ok 99 - setLabels throws exception with too many argument ok 100 - setLabels accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - labels->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - labels->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok t/CompositeCompositeMap.t ........ 1..139 ok 1 - use Bio::MAGE::DesignElement::CompositeCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 107 - setCompositeSequence returns value ok 108 - getCompositeSequence fetches correct value ok 109 - setCompositeSequence throws exception with bad argument ok 110 - getCompositeSequence throws exception with argument ok 111 - setCompositeSequence throws exception with no argument ok 112 - setCompositeSequence throws exception with too many argument ok 113 - setCompositeSequence accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 119 - compositePositionSources set in new() ok 120 - setCompositePositionSources returns correct value ok 121 - getCompositePositionSources fetches correct value ok 122 - addCompositePositionSources returns number of items in list ok 123 - addCompositePositionSources adds correct value ok 124 - setCompositePositionSources throws exception with non-array argument ok 125 - setCompositePositionSources throws exception with bad argument array ok 126 - addCompositePositionSources throws exception with no arguments ok 127 - addCompositePositionSources throws exception with bad array ok 128 - setCompositePositionSources accepts empty array ref ok 129 - getCompositePositionSources throws exception with argument ok 130 - setCompositePositionSources throws exception with no argument ok 131 - setCompositePositionSources throws exception with too many argument ok 132 - setCompositePositionSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositePositionSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositePositionSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/CompositeGroup.t ............... 1..139 ok 1 - use Bio::MAGE::ArrayDesign::CompositeGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - compositeSequences set in new() ok 37 - setCompositeSequences returns correct value ok 38 - getCompositeSequences fetches correct value ok 39 - addCompositeSequences returns number of items in list ok 40 - addCompositeSequences adds correct value ok 41 - setCompositeSequences throws exception with non-array argument ok 42 - setCompositeSequences throws exception with bad argument array ok 43 - addCompositeSequences throws exception with no arguments ok 44 - addCompositeSequences throws exception with bad array ok 45 - setCompositeSequences accepts empty array ref ok 46 - getCompositeSequences throws exception with argument ok 47 - setCompositeSequences throws exception with no argument ok 48 - setCompositeSequences throws exception with too many argument ok 49 - setCompositeSequences accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/CompositePosition.t ............ 1..69 ok 1 - use Bio::MAGE::DesignElement::CompositePosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 18 - setComposite returns value ok 19 - getComposite fetches correct value ok 20 - setComposite throws exception with bad argument ok 21 - getComposite throws exception with argument ok 22 - setComposite throws exception with no argument ok 23 - setComposite throws exception with too many argument ok 24 - setComposite accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - composite->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - composite->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/CompositeSequence.t ............ 1..158 ok 1 - use Bio::MAGE::DesignElement::CompositeSequence; ok 2 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - compositeCompositeMaps set in new() ok 31 - setCompositeCompositeMaps returns correct value ok 32 - getCompositeCompositeMaps fetches correct value ok 33 - addCompositeCompositeMaps returns number of items in list ok 34 - addCompositeCompositeMaps adds correct value ok 35 - setCompositeCompositeMaps throws exception with non-array argument ok 36 - setCompositeCompositeMaps throws exception with bad argument array ok 37 - addCompositeCompositeMaps throws exception with no arguments ok 38 - addCompositeCompositeMaps throws exception with bad array ok 39 - setCompositeCompositeMaps accepts empty array ref ok 40 - getCompositeCompositeMaps throws exception with argument ok 41 - setCompositeCompositeMaps throws exception with no argument ok 42 - setCompositeCompositeMaps throws exception with too many argument ok 43 - setCompositeCompositeMaps accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - compositeCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - compositeCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - biologicalCharacteristics set in new() ok 120 - setBiologicalCharacteristics returns correct value ok 121 - getBiologicalCharacteristics fetches correct value ok 122 - addBiologicalCharacteristics returns number of items in list ok 123 - addBiologicalCharacteristics adds correct value ok 124 - setBiologicalCharacteristics throws exception with non-array argument ok 125 - setBiologicalCharacteristics throws exception with bad argument array ok 126 - addBiologicalCharacteristics throws exception with no arguments ok 127 - addBiologicalCharacteristics throws exception with bad array ok 128 - setBiologicalCharacteristics accepts empty array ref ok 129 - getBiologicalCharacteristics throws exception with argument ok 130 - setBiologicalCharacteristics throws exception with no argument ok 131 - setBiologicalCharacteristics throws exception with too many argument ok 132 - setBiologicalCharacteristics accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - biologicalCharacteristics->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - biologicalCharacteristics->self() is a valid Bio::MAGE::Association::End ok 138 - reporterCompositeMaps set in new() ok 139 - setReporterCompositeMaps returns correct value ok 140 - getReporterCompositeMaps fetches correct value ok 141 - addReporterCompositeMaps returns number of items in list ok 142 - addReporterCompositeMaps adds correct value ok 143 - setReporterCompositeMaps throws exception with non-array argument ok 144 - setReporterCompositeMaps throws exception with bad argument array ok 145 - addReporterCompositeMaps throws exception with no arguments ok 146 - addReporterCompositeMaps throws exception with bad array ok 147 - setReporterCompositeMaps accepts empty array ref ok 148 - getReporterCompositeMaps throws exception with argument ok 149 - setReporterCompositeMaps throws exception with no argument ok 150 - setReporterCompositeMaps throws exception with too many argument ok 151 - setReporterCompositeMaps accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - reporterCompositeMaps->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - reporterCompositeMaps->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 158 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/CompositeSequenceDimension.t ... 1..107 ok 1 - use Bio::MAGE::BioAssayData::CompositeSequenceDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - compositeSequences set in new() ok 18 - setCompositeSequences returns correct value ok 19 - getCompositeSequences fetches correct value ok 20 - addCompositeSequences returns number of items in list ok 21 - addCompositeSequences adds correct value ok 22 - setCompositeSequences throws exception with non-array argument ok 23 - setCompositeSequences throws exception with bad argument array ok 24 - addCompositeSequences throws exception with no arguments ok 25 - addCompositeSequences throws exception with bad array ok 26 - setCompositeSequences accepts empty array ref ok 27 - getCompositeSequences throws exception with argument ok 28 - setCompositeSequences throws exception with no argument ok 29 - setCompositeSequences throws exception with too many argument ok 30 - setCompositeSequences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - compositeSequences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - compositeSequences->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/Compound.t ..................... 1..145 ok 1 - use Bio::MAGE::BioMaterial::Compound; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - isSolvent new ok 18 - isSolvent getter/setter ok 19 - isSolvent getter throws exception with argument ok 20 - isSolvent setter throws exception with no argument ok 21 - isSolvent setter throws exception with too many argument ok 22 - isSolvent setter accepts undef ok 23 - compoundIndices set in new() ok 24 - setCompoundIndices returns correct value ok 25 - getCompoundIndices fetches correct value ok 26 - addCompoundIndices returns number of items in list ok 27 - addCompoundIndices adds correct value ok 28 - setCompoundIndices throws exception with non-array argument ok 29 - setCompoundIndices throws exception with bad argument array ok 30 - addCompoundIndices throws exception with no arguments ok 31 - addCompoundIndices throws exception with bad array ok 32 - setCompoundIndices accepts empty array ref ok 33 - getCompoundIndices throws exception with argument ok 34 - setCompoundIndices throws exception with no argument ok 35 - setCompoundIndices throws exception with too many argument ok 36 - setCompoundIndices accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - compoundIndices->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - compoundIndices->self() is a valid Bio::MAGE::Association::End ok 42 - componentCompounds set in new() ok 43 - setComponentCompounds returns correct value ok 44 - getComponentCompounds fetches correct value ok 45 - addComponentCompounds returns number of items in list ok 46 - addComponentCompounds adds correct value ok 47 - setComponentCompounds throws exception with non-array argument ok 48 - setComponentCompounds throws exception with bad argument array ok 49 - addComponentCompounds throws exception with no arguments ok 50 - addComponentCompounds throws exception with bad array ok 51 - setComponentCompounds accepts empty array ref ok 52 - getComponentCompounds throws exception with argument ok 53 - setComponentCompounds throws exception with no argument ok 54 - setComponentCompounds throws exception with too many argument ok 55 - setComponentCompounds accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - componentCompounds->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - componentCompounds->self() is a valid Bio::MAGE::Association::End ok 61 - descriptions set in new() ok 62 - setDescriptions returns correct value ok 63 - getDescriptions fetches correct value ok 64 - addDescriptions returns number of items in list ok 65 - addDescriptions adds correct value ok 66 - setDescriptions throws exception with non-array argument ok 67 - setDescriptions throws exception with bad argument array ok 68 - addDescriptions throws exception with no arguments ok 69 - addDescriptions throws exception with bad array ok 70 - setDescriptions accepts empty array ref ok 71 - getDescriptions throws exception with argument ok 72 - setDescriptions throws exception with no argument ok 73 - setDescriptions throws exception with too many argument ok 74 - setDescriptions accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - descriptions->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - descriptions->self() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 81 - setExternalLIMS returns value ok 82 - getExternalLIMS fetches correct value ok 83 - setExternalLIMS throws exception with bad argument ok 84 - getExternalLIMS throws exception with argument ok 85 - setExternalLIMS throws exception with no argument ok 86 - setExternalLIMS throws exception with too many argument ok 87 - setExternalLIMS accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - externalLIMS->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - externalLIMS->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - auditTrail set in new() ok 107 - setAuditTrail returns correct value ok 108 - getAuditTrail fetches correct value ok 109 - addAuditTrail returns number of items in list ok 110 - addAuditTrail adds correct value ok 111 - setAuditTrail throws exception with non-array argument ok 112 - setAuditTrail throws exception with bad argument array ok 113 - addAuditTrail throws exception with no arguments ok 114 - addAuditTrail throws exception with bad array ok 115 - setAuditTrail accepts empty array ref ok 116 - getAuditTrail throws exception with argument ok 117 - setAuditTrail throws exception with no argument ok 118 - setAuditTrail throws exception with too many argument ok 119 - setAuditTrail accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 125 - propertySets set in new() ok 126 - setPropertySets returns correct value ok 127 - getPropertySets fetches correct value ok 128 - addPropertySets returns number of items in list ok 129 - addPropertySets adds correct value ok 130 - setPropertySets throws exception with non-array argument ok 131 - setPropertySets throws exception with bad argument array ok 132 - addPropertySets throws exception with no arguments ok 133 - addPropertySets throws exception with bad array ok 134 - setPropertySets accepts empty array ref ok 135 - getPropertySets throws exception with argument ok 136 - setPropertySets throws exception with no argument ok 137 - setPropertySets throws exception with too many argument ok 138 - setPropertySets accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - propertySets->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok t/CompoundMeasurement.t .......... 1..51 ok 1 - use Bio::MAGE::BioMaterial::CompoundMeasurement; ok 2 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 6 - setMeasurement returns value ok 7 - getMeasurement fetches correct value ok 8 - setMeasurement throws exception with bad argument ok 9 - getMeasurement throws exception with argument ok 10 - setMeasurement throws exception with no argument ok 11 - setMeasurement throws exception with too many argument ok 12 - setMeasurement accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - measurement->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - measurement->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 19 - setCompound returns value ok 20 - getCompound fetches correct value ok 21 - setCompound throws exception with bad argument ok 22 - getCompound throws exception with argument ok 23 - setCompound throws exception with no argument ok 24 - setCompound throws exception with too many argument ok 25 - setCompound accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - compound->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - compound->self() is a valid Bio::MAGE::Association::End ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 51 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok t/ConcentrationUnit.t ............ 1..51 ok 1 - use Bio::MAGE::Measurement::ConcentrationUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts M ok 19 - unitNameCV accepts mM ok 20 - unitNameCV accepts uM ok 21 - unitNameCV accepts nM ok 22 - unitNameCV accepts pM ok 23 - unitNameCV accepts fM ok 24 - unitNameCV accepts mg_per_mL ok 25 - unitNameCV accepts mL_per_L ok 26 - unitNameCV accepts g_per_L ok 27 - unitNameCV accepts gram_percent ok 28 - unitNameCV accepts mass_per_volume_percent ok 29 - unitNameCV accepts mass_per_mass_percent ok 30 - unitNameCV accepts other ok 31 - propertySets set in new() ok 32 - setPropertySets returns correct value ok 33 - getPropertySets fetches correct value ok 34 - addPropertySets returns number of items in list ok 35 - addPropertySets adds correct value ok 36 - setPropertySets throws exception with non-array argument ok 37 - setPropertySets throws exception with bad argument array ok 38 - addPropertySets throws exception with no arguments ok 39 - addPropertySets throws exception with bad array ok 40 - setPropertySets accepts empty array ref ok 41 - getPropertySets throws exception with argument ok 42 - setPropertySets throws exception with no argument ok 43 - setPropertySets throws exception with too many argument ok 44 - setPropertySets accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - propertySets->self() is a valid Bio::MAGE::Association::End ok 50 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 51 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/ConfidenceIndicator.t .......... 1..190 ok 1 - use Bio::MAGE::QuantitationType::ConfidenceIndicator; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 56 - setChannel returns value ok 57 - getChannel fetches correct value ok 58 - setChannel throws exception with bad argument ok 59 - getChannel throws exception with argument ok 60 - setChannel throws exception with no argument ok 61 - setChannel throws exception with too many argument ok 62 - setChannel accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - channel->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - channel->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 185 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 186 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 187 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 188 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 189 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 190 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Contact.t ...................... 1..147 ok 1 - use Bio::MAGE::AuditAndSecurity::Contact; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - tollFreePhone new ok 24 - tollFreePhone getter/setter ok 25 - tollFreePhone getter throws exception with argument ok 26 - tollFreePhone setter throws exception with no argument ok 27 - tollFreePhone setter throws exception with too many argument ok 28 - tollFreePhone setter accepts undef ok 29 - fax new ok 30 - fax getter/setter ok 31 - fax getter throws exception with argument ok 32 - fax setter throws exception with no argument ok 33 - fax setter throws exception with too many argument ok 34 - fax setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - descriptions set in new() ok 73 - setDescriptions returns correct value ok 74 - getDescriptions fetches correct value ok 75 - addDescriptions returns number of items in list ok 76 - addDescriptions adds correct value ok 77 - setDescriptions throws exception with non-array argument ok 78 - setDescriptions throws exception with bad argument array ok 79 - addDescriptions throws exception with no arguments ok 80 - addDescriptions throws exception with bad array ok 81 - setDescriptions accepts empty array ref ok 82 - getDescriptions throws exception with argument ok 83 - setDescriptions throws exception with no argument ok 84 - setDescriptions throws exception with too many argument ok 85 - setDescriptions accepts undef ok 86 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 87 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 88 - descriptions->other() is a valid Bio::MAGE::Association::End ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->self() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 92 - setSecurity returns value ok 93 - getSecurity fetches correct value ok 94 - setSecurity throws exception with bad argument ok 95 - getSecurity throws exception with argument ok 96 - setSecurity throws exception with no argument ok 97 - setSecurity throws exception with too many argument ok 98 - setSecurity accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - security->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - propertySets set in new() ok 124 - setPropertySets returns correct value ok 125 - getPropertySets fetches correct value ok 126 - addPropertySets returns number of items in list ok 127 - addPropertySets adds correct value ok 128 - setPropertySets throws exception with non-array argument ok 129 - setPropertySets throws exception with bad argument array ok 130 - addPropertySets throws exception with no arguments ok 131 - addPropertySets throws exception with bad array ok 132 - setPropertySets accepts empty array ref ok 133 - getPropertySets throws exception with argument ok 134 - setPropertySets throws exception with no argument ok 135 - setPropertySets throws exception with too many argument ok 136 - setPropertySets accepts undef ok 137 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 138 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 139 - propertySets->other() is a valid Bio::MAGE::Association::End ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - propertySets->self() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 143 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 144 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 147 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok t/Database.t ..................... 1..119 ok 1 - use Bio::MAGE::Description::Database; ok 2 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - contacts set in new() ok 30 - setContacts returns correct value ok 31 - getContacts fetches correct value ok 32 - addContacts returns number of items in list ok 33 - addContacts adds correct value ok 34 - setContacts throws exception with non-array argument ok 35 - setContacts throws exception with bad argument array ok 36 - addContacts throws exception with no arguments ok 37 - addContacts throws exception with bad array ok 38 - setContacts accepts empty array ref ok 39 - getContacts throws exception with argument ok 40 - setContacts throws exception with no argument ok 41 - setContacts throws exception with too many argument ok 42 - setContacts accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - contacts->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - contacts->self() is a valid Bio::MAGE::Association::End ok 48 - descriptions set in new() ok 49 - setDescriptions returns correct value ok 50 - getDescriptions fetches correct value ok 51 - addDescriptions returns number of items in list ok 52 - addDescriptions adds correct value ok 53 - setDescriptions throws exception with non-array argument ok 54 - setDescriptions throws exception with bad argument array ok 55 - addDescriptions throws exception with no arguments ok 56 - addDescriptions throws exception with bad array ok 57 - setDescriptions accepts empty array ref ok 58 - getDescriptions throws exception with argument ok 59 - setDescriptions throws exception with no argument ok 60 - setDescriptions throws exception with too many argument ok 61 - setDescriptions accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - descriptions->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 68 - setSecurity returns value ok 69 - getSecurity fetches correct value ok 70 - setSecurity throws exception with bad argument ok 71 - getSecurity throws exception with argument ok 72 - setSecurity throws exception with no argument ok 73 - setSecurity throws exception with too many argument ok 74 - setSecurity accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - security->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->self() is a valid Bio::MAGE::Association::End ok 80 - auditTrail set in new() ok 81 - setAuditTrail returns correct value ok 82 - getAuditTrail fetches correct value ok 83 - addAuditTrail returns number of items in list ok 84 - addAuditTrail adds correct value ok 85 - setAuditTrail throws exception with non-array argument ok 86 - setAuditTrail throws exception with bad argument array ok 87 - addAuditTrail throws exception with no arguments ok 88 - addAuditTrail throws exception with bad array ok 89 - setAuditTrail accepts empty array ref ok 90 - getAuditTrail throws exception with argument ok 91 - setAuditTrail throws exception with no argument ok 92 - setAuditTrail throws exception with too many argument ok 93 - setAuditTrail accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 99 - propertySets set in new() ok 100 - setPropertySets returns correct value ok 101 - getPropertySets fetches correct value ok 102 - addPropertySets returns number of items in list ok 103 - addPropertySets adds correct value ok 104 - setPropertySets throws exception with non-array argument ok 105 - setPropertySets throws exception with bad argument array ok 106 - addPropertySets throws exception with no arguments ok 107 - addPropertySets throws exception with bad array ok 108 - setPropertySets accepts empty array ref ok 109 - getPropertySets throws exception with argument ok 110 - setPropertySets throws exception with no argument ok 111 - setPropertySets throws exception with too many argument ok 112 - setPropertySets accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - propertySets->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok t/DatabaseEntry.t ................ 1..69 ok 1 - use Bio::MAGE::Description::DatabaseEntry; ok 2 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 3 - package ok 4 - class_name ok 5 - accessionVersion new ok 6 - accessionVersion getter/setter ok 7 - accessionVersion getter throws exception with argument ok 8 - accessionVersion setter throws exception with no argument ok 9 - accessionVersion setter throws exception with too many argument ok 10 - accessionVersion setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - accession new ok 18 - accession getter/setter ok 19 - accession getter throws exception with argument ok 20 - accession setter throws exception with no argument ok 21 - accession setter throws exception with too many argument ok 22 - accession setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 24 - setDatabase returns value ok 25 - getDatabase fetches correct value ok 26 - setDatabase throws exception with bad argument ok 27 - getDatabase throws exception with argument ok 28 - setDatabase throws exception with no argument ok 29 - setDatabase throws exception with too many argument ok 30 - setDatabase accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - database->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - database->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - setType returns value ok 38 - getType fetches correct value ok 39 - setType throws exception with bad argument ok 40 - getType throws exception with argument ok 41 - setType throws exception with no argument ok 42 - setType throws exception with too many argument ok 43 - setType accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - type->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - type->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 69 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok t/DerivedBioAssay.t .............. 1..177 ok 1 - use Bio::MAGE::BioAssay::DerivedBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::DerivedBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - descriptions set in new() ok 94 - setDescriptions returns correct value ok 95 - getDescriptions fetches correct value ok 96 - addDescriptions returns number of items in list ok 97 - addDescriptions adds correct value ok 98 - setDescriptions throws exception with non-array argument ok 99 - setDescriptions throws exception with bad argument array ok 100 - addDescriptions throws exception with no arguments ok 101 - addDescriptions throws exception with bad array ok 102 - setDescriptions accepts empty array ref ok 103 - getDescriptions throws exception with argument ok 104 - setDescriptions throws exception with no argument ok 105 - setDescriptions throws exception with too many argument ok 106 - setDescriptions accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - descriptions->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - descriptions->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 113 - setSecurity returns value ok 114 - getSecurity fetches correct value ok 115 - setSecurity throws exception with bad argument ok 116 - getSecurity throws exception with argument ok 117 - setSecurity throws exception with no argument ok 118 - setSecurity throws exception with too many argument ok 119 - setSecurity accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - security->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - security->self() is a valid Bio::MAGE::Association::End ok 125 - derivedBioAssayMap set in new() ok 126 - setDerivedBioAssayMap returns correct value ok 127 - getDerivedBioAssayMap fetches correct value ok 128 - addDerivedBioAssayMap returns number of items in list ok 129 - addDerivedBioAssayMap adds correct value ok 130 - setDerivedBioAssayMap throws exception with non-array argument ok 131 - setDerivedBioAssayMap throws exception with bad argument array ok 132 - addDerivedBioAssayMap throws exception with no arguments ok 133 - addDerivedBioAssayMap throws exception with bad array ok 134 - setDerivedBioAssayMap accepts empty array ref ok 135 - getDerivedBioAssayMap throws exception with argument ok 136 - setDerivedBioAssayMap throws exception with no argument ok 137 - setDerivedBioAssayMap throws exception with too many argument ok 138 - setDerivedBioAssayMap accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - derivedBioAssayMap->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - derivedBioAssayMap->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 145 - setType returns value ok 146 - getType fetches correct value ok 147 - setType throws exception with bad argument ok 148 - getType throws exception with argument ok 149 - setType throws exception with no argument ok 150 - setType throws exception with too many argument ok 151 - setType accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - type->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - type->self() is a valid Bio::MAGE::Association::End ok 157 - derivedBioAssayData set in new() ok 158 - setDerivedBioAssayData returns correct value ok 159 - getDerivedBioAssayData fetches correct value ok 160 - addDerivedBioAssayData returns number of items in list ok 161 - addDerivedBioAssayData adds correct value ok 162 - setDerivedBioAssayData throws exception with non-array argument ok 163 - setDerivedBioAssayData throws exception with bad argument array ok 164 - addDerivedBioAssayData throws exception with no arguments ok 165 - addDerivedBioAssayData throws exception with bad array ok 166 - setDerivedBioAssayData accepts empty array ref ok 167 - getDerivedBioAssayData throws exception with argument ok 168 - setDerivedBioAssayData throws exception with no argument ok 169 - setDerivedBioAssayData throws exception with too many argument ok 170 - setDerivedBioAssayData accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - derivedBioAssayData->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - derivedBioAssayData->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::DerivedBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/DerivedBioAssayData.t .......... 1..172 ok 1 - use Bio::MAGE::BioAssayData::DerivedBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 18 - setProducerTransformation returns value ok 19 - getProducerTransformation fetches correct value ok 20 - setProducerTransformation throws exception with bad argument ok 21 - getProducerTransformation throws exception with argument ok 22 - setProducerTransformation throws exception with no argument ok 23 - setProducerTransformation throws exception with too many argument ok 24 - setProducerTransformation accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - producerTransformation->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - producerTransformation->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 31 - setBioAssayDimension returns value ok 32 - getBioAssayDimension fetches correct value ok 33 - setBioAssayDimension throws exception with bad argument ok 34 - getBioAssayDimension throws exception with argument ok 35 - setBioAssayDimension throws exception with no argument ok 36 - setBioAssayDimension throws exception with too many argument ok 37 - setBioAssayDimension accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - summaryStatistics set in new() ok 82 - setSummaryStatistics returns correct value ok 83 - getSummaryStatistics fetches correct value ok 84 - addSummaryStatistics returns number of items in list ok 85 - addSummaryStatistics adds correct value ok 86 - setSummaryStatistics throws exception with non-array argument ok 87 - setSummaryStatistics throws exception with bad argument array ok 88 - addSummaryStatistics throws exception with no arguments ok 89 - addSummaryStatistics throws exception with bad array ok 90 - setSummaryStatistics accepts empty array ref ok 91 - getSummaryStatistics throws exception with argument ok 92 - setSummaryStatistics throws exception with no argument ok 93 - setSummaryStatistics throws exception with too many argument ok 94 - setSummaryStatistics accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 120 - setDesignElementDimension returns value ok 121 - getDesignElementDimension fetches correct value ok 122 - setDesignElementDimension throws exception with bad argument ok 123 - getDesignElementDimension throws exception with argument ok 124 - setDesignElementDimension throws exception with no argument ok 125 - setDesignElementDimension throws exception with too many argument ok 126 - setDesignElementDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 133 - setQuantitationTypeDimension returns value ok 134 - getQuantitationTypeDimension fetches correct value ok 135 - setQuantitationTypeDimension throws exception with bad argument ok 136 - getQuantitationTypeDimension throws exception with argument ok 137 - setQuantitationTypeDimension throws exception with no argument ok 138 - setQuantitationTypeDimension throws exception with too many argument ok 139 - setQuantitationTypeDimension accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 146 - setSecurity returns value ok 147 - getSecurity fetches correct value ok 148 - setSecurity throws exception with bad argument ok 149 - getSecurity throws exception with argument ok 150 - setSecurity throws exception with no argument ok 151 - setSecurity throws exception with too many argument ok 152 - setSecurity accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - security->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - security->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 159 - setBioDataValues returns value ok 160 - getBioDataValues fetches correct value ok 161 - setBioDataValues throws exception with bad argument ok 162 - getBioDataValues throws exception with argument ok 163 - setBioDataValues throws exception with no argument ok 164 - setBioDataValues throws exception with too many argument ok 165 - setBioDataValues accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 172 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/DerivedSignal.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::DerivedSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Describable.t .................. 1..98 ok 1 - use Bio::MAGE::Describable; ok 2 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 25 - setSecurity returns value ok 26 - getSecurity fetches correct value ok 27 - setSecurity throws exception with bad argument ok 28 - getSecurity throws exception with argument ok 29 - setSecurity throws exception with no argument ok 30 - setSecurity throws exception with too many argument ok 31 - setSecurity accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - security->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - security->self() is a valid Bio::MAGE::Association::End ok 37 - auditTrail set in new() ok 38 - setAuditTrail returns correct value ok 39 - getAuditTrail fetches correct value ok 40 - addAuditTrail returns number of items in list ok 41 - addAuditTrail adds correct value ok 42 - setAuditTrail throws exception with non-array argument ok 43 - setAuditTrail throws exception with bad argument array ok 44 - addAuditTrail throws exception with no arguments ok 45 - addAuditTrail throws exception with bad array ok 46 - setAuditTrail accepts empty array ref ok 47 - getAuditTrail throws exception with argument ok 48 - setAuditTrail throws exception with no argument ok 49 - setAuditTrail throws exception with too many argument ok 50 - setAuditTrail accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok 77 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 78 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok 79 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 80 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok 81 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::AuditAndSecurity::Audit' ok 82 - An object of class 'Bio::MAGE::AuditAndSecurity::Audit' isa 'Bio::MAGE::Describable' ok 83 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 84 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok 85 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 86 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok 87 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::BQS::BibliographicReference' ok 88 - An object of class 'Bio::MAGE::BQS::BibliographicReference' isa 'Bio::MAGE::Describable' ok 89 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 90 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok 91 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 92 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok 93 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 94 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok 95 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok 97 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 98 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok t/Description.t .................. 1..158 ok 1 - use Bio::MAGE::Description::Description; ok 2 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - text new ok 12 - text getter/setter ok 13 - text getter throws exception with argument ok 14 - text setter throws exception with no argument ok 15 - text setter throws exception with too many argument ok 16 - text setter accepts undef ok 17 - databaseReferences set in new() ok 18 - setDatabaseReferences returns correct value ok 19 - getDatabaseReferences fetches correct value ok 20 - addDatabaseReferences returns number of items in list ok 21 - addDatabaseReferences adds correct value ok 22 - setDatabaseReferences throws exception with non-array argument ok 23 - setDatabaseReferences throws exception with bad argument array ok 24 - addDatabaseReferences throws exception with no arguments ok 25 - addDatabaseReferences throws exception with bad array ok 26 - setDatabaseReferences accepts empty array ref ok 27 - getDatabaseReferences throws exception with argument ok 28 - setDatabaseReferences throws exception with no argument ok 29 - setDatabaseReferences throws exception with too many argument ok 30 - setDatabaseReferences accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - databaseReferences->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - databaseReferences->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 37 - setExternalReference returns value ok 38 - getExternalReference fetches correct value ok 39 - setExternalReference throws exception with bad argument ok 40 - getExternalReference throws exception with argument ok 41 - setExternalReference throws exception with no argument ok 42 - setExternalReference throws exception with too many argument ok 43 - setExternalReference accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - externalReference->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - externalReference->self() is a valid Bio::MAGE::Association::End ok 49 - bibliographicReferences set in new() ok 50 - setBibliographicReferences returns correct value ok 51 - getBibliographicReferences fetches correct value ok 52 - addBibliographicReferences returns number of items in list ok 53 - addBibliographicReferences adds correct value ok 54 - setBibliographicReferences throws exception with non-array argument ok 55 - setBibliographicReferences throws exception with bad argument array ok 56 - addBibliographicReferences throws exception with no arguments ok 57 - addBibliographicReferences throws exception with bad array ok 58 - setBibliographicReferences accepts empty array ref ok 59 - getBibliographicReferences throws exception with argument ok 60 - setBibliographicReferences throws exception with no argument ok 61 - setBibliographicReferences throws exception with too many argument ok 62 - setBibliographicReferences accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - bibliographicReferences->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - bibliographicReferences->self() is a valid Bio::MAGE::Association::End ok 68 - descriptions set in new() ok 69 - setDescriptions returns correct value ok 70 - getDescriptions fetches correct value ok 71 - addDescriptions returns number of items in list ok 72 - addDescriptions adds correct value ok 73 - setDescriptions throws exception with non-array argument ok 74 - setDescriptions throws exception with bad argument array ok 75 - addDescriptions throws exception with no arguments ok 76 - addDescriptions throws exception with bad array ok 77 - setDescriptions accepts empty array ref ok 78 - getDescriptions throws exception with argument ok 79 - setDescriptions throws exception with no argument ok 80 - setDescriptions throws exception with too many argument ok 81 - setDescriptions accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - descriptions->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 107 - setSecurity returns value ok 108 - getSecurity fetches correct value ok 109 - setSecurity throws exception with bad argument ok 110 - getSecurity throws exception with argument ok 111 - setSecurity throws exception with no argument ok 112 - setSecurity throws exception with too many argument ok 113 - setSecurity accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - security->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - security->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - annotations set in new() ok 139 - setAnnotations returns correct value ok 140 - getAnnotations fetches correct value ok 141 - addAnnotations returns number of items in list ok 142 - addAnnotations adds correct value ok 143 - setAnnotations throws exception with non-array argument ok 144 - setAnnotations throws exception with bad argument array ok 145 - addAnnotations throws exception with no arguments ok 146 - addAnnotations throws exception with bad array ok 147 - setAnnotations accepts empty array ref ok 148 - getAnnotations throws exception with argument ok 149 - setAnnotations throws exception with no argument ok 150 - setAnnotations throws exception with too many argument ok 151 - setAnnotations accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - annotations->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - annotations->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 158 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Describable' ok t/Description_package.t .......... 1..16 ok 1 - use Bio::MAGE::Description; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 4 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 5 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 6 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 7 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 8 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 9 - tagname ok 10 - xml_lists ok 11 - A reference of type 'ARRAY' isa 'ARRAY' ok 12 - database_list empty ok 13 - A reference of type 'ARRAY' isa 'ARRAY' ok 14 - getDatabase_list empty ok 15 - A reference of type 'ARRAY' isa 'ARRAY' ok 16 - getDatabase_list not empty ok t/DesignElement.t ................ 1..107 ok 1 - use Bio::MAGE::DesignElement::DesignElement; ok 2 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 101 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 103 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::DesignElement' ok 104 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 105 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok t/DesignElement_package.t ........ 1..48 ok 1 - use Bio::MAGE::DesignElement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 4 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 5 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 6 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 7 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 8 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 9 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 10 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 11 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 12 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 13 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 14 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 15 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 16 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 17 - tagname ok 18 - xml_lists ok 19 - A reference of type 'ARRAY' isa 'ARRAY' ok 20 - compositesequence_list empty ok 21 - A reference of type 'ARRAY' isa 'ARRAY' ok 22 - getCompositeSequence_list empty ok 23 - A reference of type 'ARRAY' isa 'ARRAY' ok 24 - getCompositeSequence_list not empty ok 25 - A reference of type 'ARRAY' isa 'ARRAY' ok 26 - reporter_list empty ok 27 - A reference of type 'ARRAY' isa 'ARRAY' ok 28 - getReporter_list empty ok 29 - A reference of type 'ARRAY' isa 'ARRAY' ok 30 - getReporter_list not empty ok 31 - A reference of type 'ARRAY' isa 'ARRAY' ok 32 - compositecompositemap_list empty ok 33 - A reference of type 'ARRAY' isa 'ARRAY' ok 34 - getCompositeCompositeMap_list empty ok 35 - A reference of type 'ARRAY' isa 'ARRAY' ok 36 - getCompositeCompositeMap_list not empty ok 37 - A reference of type 'ARRAY' isa 'ARRAY' ok 38 - reportercompositemap_list empty ok 39 - A reference of type 'ARRAY' isa 'ARRAY' ok 40 - getReporterCompositeMap_list empty ok 41 - A reference of type 'ARRAY' isa 'ARRAY' ok 42 - getReporterCompositeMap_list not empty ok 43 - A reference of type 'ARRAY' isa 'ARRAY' ok 44 - featurereportermap_list empty ok 45 - A reference of type 'ARRAY' isa 'ARRAY' ok 46 - getFeatureReporterMap_list empty ok 47 - A reference of type 'ARRAY' isa 'ARRAY' ok 48 - getFeatureReporterMap_list not empty ok t/DesignElementDimension.t ....... 1..94 ok 1 - use Bio::MAGE::BioAssayData::DesignElementDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' ok 88 - An object of class 'Bio::MAGE::BioAssayData::CompositeSequenceDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 89 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 90 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 91 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 92 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 93 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 94 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok t/DesignElementGroup.t ........... 1..126 ok 1 - use Bio::MAGE::ArrayDesign::DesignElementGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - types set in new() ok 18 - setTypes returns correct value ok 19 - getTypes fetches correct value ok 20 - addTypes returns number of items in list ok 21 - addTypes adds correct value ok 22 - setTypes throws exception with non-array argument ok 23 - setTypes throws exception with bad argument array ok 24 - addTypes throws exception with no arguments ok 25 - addTypes throws exception with bad array ok 26 - setTypes accepts empty array ref ok 27 - getTypes throws exception with argument ok 28 - setTypes throws exception with no argument ok 29 - setTypes throws exception with too many argument ok 30 - setTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - types->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - types->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setSpecies returns value ok 89 - getSpecies fetches correct value ok 90 - setSpecies throws exception with bad argument ok 91 - getSpecies throws exception with argument ok 92 - setSpecies throws exception with no argument ok 93 - setSpecies throws exception with too many argument ok 94 - setSpecies accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - species->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - species->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 120 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 121 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 122 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 123 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::CompositeGroup' ok 124 - An object of class 'Bio::MAGE::ArrayDesign::CompositeGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok t/DesignElementMap.t ............. 1..113 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::DesignElement::CompositeCompositeMap' ok 107 - An object of class 'Bio::MAGE::DesignElement::CompositeCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 108 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 109 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 110 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 111 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 112 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 113 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok t/DesignElementMapping.t ......... 1..44 ok 1 - use Bio::MAGE::BioAssayData::DesignElementMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - designElementMaps set in new() ok 25 - setDesignElementMaps returns correct value ok 26 - getDesignElementMaps fetches correct value ok 27 - addDesignElementMaps returns number of items in list ok 28 - addDesignElementMaps adds correct value ok 29 - setDesignElementMaps throws exception with non-array argument ok 30 - setDesignElementMaps throws exception with bad argument array ok 31 - addDesignElementMaps throws exception with no arguments ok 32 - addDesignElementMaps throws exception with bad array ok 33 - setDesignElementMaps accepts empty array ref ok 34 - getDesignElementMaps throws exception with argument ok 35 - setDesignElementMaps throws exception with no argument ok 36 - setDesignElementMaps throws exception with too many argument ok 37 - setDesignElementMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok t/DistanceUnit.t ................. 1..46 ok 1 - use Bio::MAGE::Measurement::DistanceUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts fm ok 19 - unitNameCV accepts pm ok 20 - unitNameCV accepts nm ok 21 - unitNameCV accepts um ok 22 - unitNameCV accepts mm ok 23 - unitNameCV accepts cm ok 24 - unitNameCV accepts m ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Error.t ........................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::Error; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/ExpectedValue.t ................ 1..184 ok 1 - use Bio::MAGE::QuantitationType::ExpectedValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/Experiment.t ................... 1..183 ok 1 - use Bio::MAGE::Experiment::Experiment; ok 2 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - experimentDesigns set in new() ok 18 - setExperimentDesigns returns correct value ok 19 - getExperimentDesigns fetches correct value ok 20 - addExperimentDesigns returns number of items in list ok 21 - addExperimentDesigns adds correct value ok 22 - setExperimentDesigns throws exception with non-array argument ok 23 - setExperimentDesigns throws exception with bad argument array ok 24 - addExperimentDesigns throws exception with no arguments ok 25 - addExperimentDesigns throws exception with bad array ok 26 - setExperimentDesigns accepts empty array ref ok 27 - getExperimentDesigns throws exception with argument ok 28 - setExperimentDesigns throws exception with no argument ok 29 - setExperimentDesigns throws exception with too many argument ok 30 - setExperimentDesigns accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - experimentDesigns->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - experimentDesigns->self() is a valid Bio::MAGE::Association::End ok 36 - providers set in new() ok 37 - setProviders returns correct value ok 38 - getProviders fetches correct value ok 39 - addProviders returns number of items in list ok 40 - addProviders adds correct value ok 41 - setProviders throws exception with non-array argument ok 42 - setProviders throws exception with bad argument array ok 43 - addProviders throws exception with no arguments ok 44 - addProviders throws exception with bad array ok 45 - setProviders accepts empty array ref ok 46 - getProviders throws exception with argument ok 47 - setProviders throws exception with no argument ok 48 - setProviders throws exception with too many argument ok 49 - setProviders accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - providers->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - providers->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - propertySets set in new() ok 75 - setPropertySets returns correct value ok 76 - getPropertySets fetches correct value ok 77 - addPropertySets returns number of items in list ok 78 - addPropertySets adds correct value ok 79 - setPropertySets throws exception with non-array argument ok 80 - setPropertySets throws exception with bad argument array ok 81 - addPropertySets throws exception with no arguments ok 82 - addPropertySets throws exception with bad array ok 83 - setPropertySets accepts empty array ref ok 84 - getPropertySets throws exception with argument ok 85 - setPropertySets throws exception with no argument ok 86 - setPropertySets throws exception with too many argument ok 87 - setPropertySets accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - propertySets->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - propertySets->self() is a valid Bio::MAGE::Association::End ok 93 - analysisResults set in new() ok 94 - setAnalysisResults returns correct value ok 95 - getAnalysisResults fetches correct value ok 96 - addAnalysisResults returns number of items in list ok 97 - addAnalysisResults adds correct value ok 98 - setAnalysisResults throws exception with non-array argument ok 99 - setAnalysisResults throws exception with bad argument array ok 100 - addAnalysisResults throws exception with no arguments ok 101 - addAnalysisResults throws exception with bad array ok 102 - setAnalysisResults accepts empty array ref ok 103 - getAnalysisResults throws exception with argument ok 104 - setAnalysisResults throws exception with no argument ok 105 - setAnalysisResults throws exception with too many argument ok 106 - setAnalysisResults accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - analysisResults->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - analysisResults->self() is a valid Bio::MAGE::Association::End ok 112 - bioAssays set in new() ok 113 - setBioAssays returns correct value ok 114 - getBioAssays fetches correct value ok 115 - addBioAssays returns number of items in list ok 116 - addBioAssays adds correct value ok 117 - setBioAssays throws exception with non-array argument ok 118 - setBioAssays throws exception with bad argument array ok 119 - addBioAssays throws exception with no arguments ok 120 - addBioAssays throws exception with bad array ok 121 - setBioAssays accepts empty array ref ok 122 - getBioAssays throws exception with argument ok 123 - setBioAssays throws exception with no argument ok 124 - setBioAssays throws exception with too many argument ok 125 - setBioAssays accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - bioAssays->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - bioAssays->self() is a valid Bio::MAGE::Association::End ok 131 - descriptions set in new() ok 132 - setDescriptions returns correct value ok 133 - getDescriptions fetches correct value ok 134 - addDescriptions returns number of items in list ok 135 - addDescriptions adds correct value ok 136 - setDescriptions throws exception with non-array argument ok 137 - setDescriptions throws exception with bad argument array ok 138 - addDescriptions throws exception with no arguments ok 139 - addDescriptions throws exception with bad array ok 140 - setDescriptions accepts empty array ref ok 141 - getDescriptions throws exception with argument ok 142 - setDescriptions throws exception with no argument ok 143 - setDescriptions throws exception with too many argument ok 144 - setDescriptions accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - descriptions->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - descriptions->self() is a valid Bio::MAGE::Association::End ok 150 - bioAssayData set in new() ok 151 - setBioAssayData returns correct value ok 152 - getBioAssayData fetches correct value ok 153 - addBioAssayData returns number of items in list ok 154 - addBioAssayData adds correct value ok 155 - setBioAssayData throws exception with non-array argument ok 156 - setBioAssayData throws exception with bad argument array ok 157 - addBioAssayData throws exception with no arguments ok 158 - addBioAssayData throws exception with bad array ok 159 - setBioAssayData accepts empty array ref ok 160 - getBioAssayData throws exception with argument ok 161 - setBioAssayData throws exception with no argument ok 162 - setBioAssayData throws exception with too many argument ok 163 - setBioAssayData accepts undef ok 164 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 165 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 166 - bioAssayData->other() is a valid Bio::MAGE::Association::End ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - bioAssayData->self() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 170 - setSecurity returns value ok 171 - getSecurity fetches correct value ok 172 - setSecurity throws exception with bad argument ok 173 - getSecurity throws exception with argument ok 174 - setSecurity throws exception with no argument ok 175 - setSecurity throws exception with too many argument ok 176 - setSecurity accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - security->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - security->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 183 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok t/Experiment_package.t ........... 1..15 ok 1 - use Bio::MAGE::Experiment; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 4 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 5 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 6 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 7 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - experiment_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getExperiment_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getExperiment_list not empty ok t/ExperimentalFactor.t ........... 1..139 ok 1 - use Bio::MAGE::Experiment::ExperimentalFactor; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 37 - setSecurity returns value ok 38 - getSecurity fetches correct value ok 39 - setSecurity throws exception with bad argument ok 40 - getSecurity throws exception with argument ok 41 - setSecurity throws exception with no argument ok 42 - setSecurity throws exception with too many argument ok 43 - setSecurity accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - security->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - security->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 69 - setCategory returns value ok 70 - getCategory fetches correct value ok 71 - setCategory throws exception with bad argument ok 72 - getCategory throws exception with argument ok 73 - setCategory throws exception with no argument ok 74 - setCategory throws exception with too many argument ok 75 - setCategory accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - category->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - category->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - factorValues set in new() ok 101 - setFactorValues returns correct value ok 102 - getFactorValues fetches correct value ok 103 - addFactorValues returns number of items in list ok 104 - addFactorValues adds correct value ok 105 - setFactorValues throws exception with non-array argument ok 106 - setFactorValues throws exception with bad argument array ok 107 - addFactorValues throws exception with no arguments ok 108 - addFactorValues throws exception with bad array ok 109 - setFactorValues accepts empty array ref ok 110 - getFactorValues throws exception with argument ok 111 - setFactorValues throws exception with no argument ok 112 - setFactorValues throws exception with too many argument ok 113 - setFactorValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - factorValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - factorValues->self() is a valid Bio::MAGE::Association::End ok 119 - annotations set in new() ok 120 - setAnnotations returns correct value ok 121 - getAnnotations fetches correct value ok 122 - addAnnotations returns number of items in list ok 123 - addAnnotations adds correct value ok 124 - setAnnotations throws exception with non-array argument ok 125 - setAnnotations throws exception with bad argument array ok 126 - addAnnotations throws exception with no arguments ok 127 - addAnnotations throws exception with bad array ok 128 - setAnnotations accepts empty array ref ok 129 - getAnnotations throws exception with argument ok 130 - setAnnotations throws exception with no argument ok 131 - setAnnotations throws exception with too many argument ok 132 - setAnnotations accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - annotations->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - annotations->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok t/ExperimentDesign.t ............. 1..172 ok 1 - use Bio::MAGE::Experiment::ExperimentDesign; ok 2 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Experiment::ExperimentDesign' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 6 - setReplicateDescription returns value ok 7 - getReplicateDescription fetches correct value ok 8 - setReplicateDescription throws exception with bad argument ok 9 - getReplicateDescription throws exception with argument ok 10 - setReplicateDescription throws exception with no argument ok 11 - setReplicateDescription throws exception with too many argument ok 12 - setReplicateDescription accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - replicateDescription->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - replicateDescription->self() is a valid Bio::MAGE::Association::End ok 18 - experimentalFactors set in new() ok 19 - setExperimentalFactors returns correct value ok 20 - getExperimentalFactors fetches correct value ok 21 - addExperimentalFactors returns number of items in list ok 22 - addExperimentalFactors adds correct value ok 23 - setExperimentalFactors throws exception with non-array argument ok 24 - setExperimentalFactors throws exception with bad argument array ok 25 - addExperimentalFactors throws exception with no arguments ok 26 - addExperimentalFactors throws exception with bad array ok 27 - setExperimentalFactors accepts empty array ref ok 28 - getExperimentalFactors throws exception with argument ok 29 - setExperimentalFactors throws exception with no argument ok 30 - setExperimentalFactors throws exception with too many argument ok 31 - setExperimentalFactors accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - experimentalFactors->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - experimentalFactors->self() is a valid Bio::MAGE::Association::End ok 37 - types set in new() ok 38 - setTypes returns correct value ok 39 - getTypes fetches correct value ok 40 - addTypes returns number of items in list ok 41 - addTypes adds correct value ok 42 - setTypes throws exception with non-array argument ok 43 - setTypes throws exception with bad argument array ok 44 - addTypes throws exception with no arguments ok 45 - addTypes throws exception with bad array ok 46 - setTypes accepts empty array ref ok 47 - getTypes throws exception with argument ok 48 - setTypes throws exception with no argument ok 49 - setTypes throws exception with too many argument ok 50 - setTypes accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - types->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 57 - setQualityControlDescription returns value ok 58 - getQualityControlDescription fetches correct value ok 59 - setQualityControlDescription throws exception with bad argument ok 60 - getQualityControlDescription throws exception with argument ok 61 - setQualityControlDescription throws exception with no argument ok 62 - setQualityControlDescription throws exception with too many argument ok 63 - setQualityControlDescription accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - qualityControlDescription->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - qualityControlDescription->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::Description::Description' isa 'Bio::MAGE::Description::Description' ok 70 - setNormalizationDescription returns value ok 71 - getNormalizationDescription fetches correct value ok 72 - setNormalizationDescription throws exception with bad argument ok 73 - getNormalizationDescription throws exception with argument ok 74 - setNormalizationDescription throws exception with no argument ok 75 - setNormalizationDescription throws exception with too many argument ok 76 - setNormalizationDescription accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - normalizationDescription->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - normalizationDescription->self() is a valid Bio::MAGE::Association::End ok 82 - auditTrail set in new() ok 83 - setAuditTrail returns correct value ok 84 - getAuditTrail fetches correct value ok 85 - addAuditTrail returns number of items in list ok 86 - addAuditTrail adds correct value ok 87 - setAuditTrail throws exception with non-array argument ok 88 - setAuditTrail throws exception with bad argument array ok 89 - addAuditTrail throws exception with no arguments ok 90 - addAuditTrail throws exception with bad array ok 91 - setAuditTrail accepts empty array ref ok 92 - getAuditTrail throws exception with argument ok 93 - setAuditTrail throws exception with no argument ok 94 - setAuditTrail throws exception with too many argument ok 95 - setAuditTrail accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - topLevelBioAssays set in new() ok 121 - setTopLevelBioAssays returns correct value ok 122 - getTopLevelBioAssays fetches correct value ok 123 - addTopLevelBioAssays returns number of items in list ok 124 - addTopLevelBioAssays adds correct value ok 125 - setTopLevelBioAssays throws exception with non-array argument ok 126 - setTopLevelBioAssays throws exception with bad argument array ok 127 - addTopLevelBioAssays throws exception with no arguments ok 128 - addTopLevelBioAssays throws exception with bad array ok 129 - setTopLevelBioAssays accepts empty array ref ok 130 - getTopLevelBioAssays throws exception with argument ok 131 - setTopLevelBioAssays throws exception with no argument ok 132 - setTopLevelBioAssays throws exception with too many argument ok 133 - setTopLevelBioAssays accepts undef ok 134 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - topLevelBioAssays->other() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - topLevelBioAssays->self() is a valid Bio::MAGE::Association::End ok 139 - descriptions set in new() ok 140 - setDescriptions returns correct value ok 141 - getDescriptions fetches correct value ok 142 - addDescriptions returns number of items in list ok 143 - addDescriptions adds correct value ok 144 - setDescriptions throws exception with non-array argument ok 145 - setDescriptions throws exception with bad argument array ok 146 - addDescriptions throws exception with no arguments ok 147 - addDescriptions throws exception with bad array ok 148 - setDescriptions accepts empty array ref ok 149 - getDescriptions throws exception with argument ok 150 - setDescriptions throws exception with no argument ok 151 - setDescriptions throws exception with too many argument ok 152 - setDescriptions accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - descriptions->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - descriptions->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 159 - setSecurity returns value ok 160 - getSecurity fetches correct value ok 161 - setSecurity throws exception with bad argument ok 162 - getSecurity throws exception with argument ok 163 - setSecurity throws exception with no argument ok 164 - setSecurity throws exception with too many argument ok 165 - setSecurity accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - security->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - security->self() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 172 - An object of class 'Bio::MAGE::Experiment::ExperimentDesign' isa 'Bio::MAGE::Describable' ok t/Extendable.t ................... 1..77 ok 1 - use Bio::MAGE::Extendable; ok 2 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 25 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok 26 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 27 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Extendable' ok 28 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok 30 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 31 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok 32 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 33 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok 34 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 35 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok 36 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 37 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok 38 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 39 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok 40 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 41 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok 42 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 43 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok 46 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 47 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::Extendable' ok 48 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::BioAssayData::BioAssayDatum' ok 49 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDatum' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 51 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Extendable' ok 52 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 53 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok 54 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 55 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::Extendable' ok 56 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok 58 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 59 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok 60 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 61 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Array::ArrayManufactureDeviation' ok 63 - An object of class 'Bio::MAGE::Array::ArrayManufactureDeviation' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 65 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok 66 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 67 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok 68 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 69 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok 70 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 71 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok 72 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::BioMaterial::CompoundMeasurement' ok 73 - An object of class 'Bio::MAGE::BioMaterial::CompoundMeasurement' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' ok 75 - An object of class 'Bio::MAGE::BioMaterial::BioMaterialMeasurement' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 77 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/ExternalReference.t ............ 1..49 ok 1 - use Bio::MAGE::Description::ExternalReference; ok 2 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Description::ExternalReference' ok 3 - package ok 4 - class_name ok 5 - exportedFromDB new ok 6 - exportedFromDB getter/setter ok 7 - exportedFromDB getter throws exception with argument ok 8 - exportedFromDB setter throws exception with no argument ok 9 - exportedFromDB setter throws exception with too many argument ok 10 - exportedFromDB setter accepts undef ok 11 - exportName new ok 12 - exportName getter/setter ok 13 - exportName getter throws exception with argument ok 14 - exportName setter throws exception with no argument ok 15 - exportName setter throws exception with too many argument ok 16 - exportName setter accepts undef ok 17 - exportedFromServer new ok 18 - exportedFromServer getter/setter ok 19 - exportedFromServer getter throws exception with argument ok 20 - exportedFromServer setter throws exception with no argument ok 21 - exportedFromServer setter throws exception with too many argument ok 22 - exportedFromServer setter accepts undef ok 23 - exportID new ok 24 - exportID getter/setter ok 25 - exportID getter throws exception with argument ok 26 - exportID setter throws exception with no argument ok 27 - exportID setter throws exception with too many argument ok 28 - exportID setter accepts undef ok 29 - propertySets set in new() ok 30 - setPropertySets returns correct value ok 31 - getPropertySets fetches correct value ok 32 - addPropertySets returns number of items in list ok 33 - addPropertySets adds correct value ok 34 - setPropertySets throws exception with non-array argument ok 35 - setPropertySets throws exception with bad argument array ok 36 - addPropertySets throws exception with no arguments ok 37 - addPropertySets throws exception with bad array ok 38 - setPropertySets accepts empty array ref ok 39 - getPropertySets throws exception with argument ok 40 - setPropertySets throws exception with no argument ok 41 - setPropertySets throws exception with too many argument ok 42 - setPropertySets accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - propertySets->self() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 49 - An object of class 'Bio::MAGE::Description::ExternalReference' isa 'Bio::MAGE::Extendable' ok t/FactorValue.t .................. 1..127 ok 1 - use Bio::MAGE::Experiment::FactorValue; ok 2 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 18 - setExperimentalFactor returns value ok 19 - getExperimentalFactor fetches correct value ok 20 - setExperimentalFactor throws exception with bad argument ok 21 - getExperimentalFactor throws exception with argument ok 22 - setExperimentalFactor throws exception with no argument ok 23 - setExperimentalFactor throws exception with too many argument ok 24 - setExperimentalFactor accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - experimentalFactor->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - experimentalFactor->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 31 - setMeasurement returns value ok 32 - getMeasurement fetches correct value ok 33 - setMeasurement throws exception with bad argument ok 34 - getMeasurement throws exception with argument ok 35 - setMeasurement throws exception with no argument ok 36 - setMeasurement throws exception with too many argument ok 37 - setMeasurement accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - measurement->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - measurement->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setValue returns value ok 45 - getValue fetches correct value ok 46 - setValue throws exception with bad argument ok 47 - getValue throws exception with argument ok 48 - setValue throws exception with no argument ok 49 - setValue throws exception with too many argument ok 50 - setValue accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - value->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - value->self() is a valid Bio::MAGE::Association::End ok 56 - descriptions set in new() ok 57 - setDescriptions returns correct value ok 58 - getDescriptions fetches correct value ok 59 - addDescriptions returns number of items in list ok 60 - addDescriptions adds correct value ok 61 - setDescriptions throws exception with non-array argument ok 62 - setDescriptions throws exception with bad argument array ok 63 - addDescriptions throws exception with no arguments ok 64 - addDescriptions throws exception with bad array ok 65 - setDescriptions accepts empty array ref ok 66 - getDescriptions throws exception with argument ok 67 - setDescriptions throws exception with no argument ok 68 - setDescriptions throws exception with too many argument ok 69 - setDescriptions accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - descriptions->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - descriptions->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 76 - setSecurity returns value ok 77 - getSecurity fetches correct value ok 78 - setSecurity throws exception with bad argument ok 79 - getSecurity throws exception with argument ok 80 - setSecurity throws exception with no argument ok 81 - setSecurity throws exception with too many argument ok 82 - setSecurity accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - security->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - security->self() is a valid Bio::MAGE::Association::End ok 88 - auditTrail set in new() ok 89 - setAuditTrail returns correct value ok 90 - getAuditTrail fetches correct value ok 91 - addAuditTrail returns number of items in list ok 92 - addAuditTrail adds correct value ok 93 - setAuditTrail throws exception with non-array argument ok 94 - setAuditTrail throws exception with bad argument array ok 95 - addAuditTrail throws exception with no arguments ok 96 - addAuditTrail throws exception with bad array ok 97 - setAuditTrail accepts empty array ref ok 98 - getAuditTrail throws exception with argument ok 99 - setAuditTrail throws exception with no argument ok 100 - setAuditTrail throws exception with too many argument ok 101 - setAuditTrail accepts undef ok 102 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 107 - propertySets set in new() ok 108 - setPropertySets returns correct value ok 109 - getPropertySets fetches correct value ok 110 - addPropertySets returns number of items in list ok 111 - addPropertySets adds correct value ok 112 - setPropertySets throws exception with non-array argument ok 113 - setPropertySets throws exception with bad argument array ok 114 - addPropertySets throws exception with no arguments ok 115 - addPropertySets throws exception with bad array ok 116 - setPropertySets accepts empty array ref ok 117 - getPropertySets throws exception with argument ok 118 - setPropertySets throws exception with no argument ok 119 - setPropertySets throws exception with too many argument ok 120 - setPropertySets accepts undef ok 121 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 122 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 123 - propertySets->other() is a valid Bio::MAGE::Association::End ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - propertySets->self() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok t/Failed.t ....................... 1..171 ok 1 - use Bio::MAGE::QuantitationType::Failed; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Feature.t ...................... 1..191 ok 1 - use Bio::MAGE::DesignElement::Feature; ok 2 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setControlType returns value ok 19 - getControlType fetches correct value ok 20 - setControlType throws exception with bad argument ok 21 - getControlType throws exception with argument ok 22 - setControlType throws exception with no argument ok 23 - setControlType throws exception with too many argument ok 24 - setControlType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - controlType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - controlType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 31 - setZone returns value ok 32 - getZone fetches correct value ok 33 - setZone throws exception with bad argument ok 34 - getZone throws exception with argument ok 35 - setZone throws exception with no argument ok 36 - setZone throws exception with too many argument ok 37 - setZone accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - zone->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - zone->self() is a valid Bio::MAGE::Association::End ok 43 - controlledFeatures set in new() ok 44 - setControlledFeatures returns correct value ok 45 - getControlledFeatures fetches correct value ok 46 - addControlledFeatures returns number of items in list ok 47 - addControlledFeatures adds correct value ok 48 - setControlledFeatures throws exception with non-array argument ok 49 - setControlledFeatures throws exception with bad argument array ok 50 - addControlledFeatures throws exception with no arguments ok 51 - addControlledFeatures throws exception with bad array ok 52 - setControlledFeatures accepts empty array ref ok 53 - getControlledFeatures throws exception with argument ok 54 - setControlledFeatures throws exception with no argument ok 55 - setControlledFeatures throws exception with too many argument ok 56 - setControlledFeatures accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - controlledFeatures->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - controlledFeatures->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 63 - setPosition returns value ok 64 - getPosition fetches correct value ok 65 - setPosition throws exception with bad argument ok 66 - getPosition throws exception with argument ok 67 - setPosition throws exception with no argument ok 68 - setPosition throws exception with too many argument ok 69 - setPosition accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - position->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - position->self() is a valid Bio::MAGE::Association::End ok 75 - auditTrail set in new() ok 76 - setAuditTrail returns correct value ok 77 - getAuditTrail fetches correct value ok 78 - addAuditTrail returns number of items in list ok 79 - addAuditTrail adds correct value ok 80 - setAuditTrail throws exception with non-array argument ok 81 - setAuditTrail throws exception with bad argument array ok 82 - addAuditTrail throws exception with no arguments ok 83 - addAuditTrail throws exception with bad array ok 84 - setAuditTrail accepts empty array ref ok 85 - getAuditTrail throws exception with argument ok 86 - setAuditTrail throws exception with no argument ok 87 - setAuditTrail throws exception with too many argument ok 88 - setAuditTrail accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 94 - propertySets set in new() ok 95 - setPropertySets returns correct value ok 96 - getPropertySets fetches correct value ok 97 - addPropertySets returns number of items in list ok 98 - addPropertySets adds correct value ok 99 - setPropertySets throws exception with non-array argument ok 100 - setPropertySets throws exception with bad argument array ok 101 - addPropertySets throws exception with no arguments ok 102 - addPropertySets throws exception with bad array ok 103 - setPropertySets accepts empty array ref ok 104 - getPropertySets throws exception with argument ok 105 - setPropertySets throws exception with no argument ok 106 - setPropertySets throws exception with too many argument ok 107 - setPropertySets accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - propertySets->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - propertySets->self() is a valid Bio::MAGE::Association::End ok 113 - descriptions set in new() ok 114 - setDescriptions returns correct value ok 115 - getDescriptions fetches correct value ok 116 - addDescriptions returns number of items in list ok 117 - addDescriptions adds correct value ok 118 - setDescriptions throws exception with non-array argument ok 119 - setDescriptions throws exception with bad argument array ok 120 - addDescriptions throws exception with no arguments ok 121 - addDescriptions throws exception with bad array ok 122 - setDescriptions accepts empty array ref ok 123 - getDescriptions throws exception with argument ok 124 - setDescriptions throws exception with no argument ok 125 - setDescriptions throws exception with too many argument ok 126 - setDescriptions accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - descriptions->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 146 - setFeatureGroup returns value ok 147 - getFeatureGroup fetches correct value ok 148 - setFeatureGroup throws exception with bad argument ok 149 - getFeatureGroup throws exception with argument ok 150 - setFeatureGroup throws exception with no argument ok 151 - setFeatureGroup throws exception with too many argument ok 152 - setFeatureGroup accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - featureGroup->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - featureGroup->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 159 - setFeatureLocation returns value ok 160 - getFeatureLocation fetches correct value ok 161 - setFeatureLocation throws exception with bad argument ok 162 - getFeatureLocation throws exception with argument ok 163 - setFeatureLocation throws exception with no argument ok 164 - setFeatureLocation throws exception with too many argument ok 165 - setFeatureLocation accepts undef ok 166 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 167 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 168 - featureLocation->other() is a valid Bio::MAGE::Association::End ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - featureLocation->self() is a valid Bio::MAGE::Association::End ok 171 - controlFeatures set in new() ok 172 - setControlFeatures returns correct value ok 173 - getControlFeatures fetches correct value ok 174 - addControlFeatures returns number of items in list ok 175 - addControlFeatures adds correct value ok 176 - setControlFeatures throws exception with non-array argument ok 177 - setControlFeatures throws exception with bad argument array ok 178 - addControlFeatures throws exception with no arguments ok 179 - addControlFeatures throws exception with bad array ok 180 - setControlFeatures accepts empty array ref ok 181 - getControlFeatures throws exception with argument ok 182 - setControlFeatures throws exception with no argument ok 183 - setControlFeatures throws exception with too many argument ok 184 - setControlFeatures accepts undef ok 185 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 186 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 187 - controlFeatures->other() is a valid Bio::MAGE::Association::End ok 188 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 189 - controlFeatures->self() is a valid Bio::MAGE::Association::End ok 190 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 191 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/FeatureDefect.t ................ 1..64 ok 1 - use Bio::MAGE::Array::FeatureDefect; ok 2 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Array::FeatureDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 19 - setFeature returns value ok 20 - getFeature fetches correct value ok 21 - setFeature throws exception with bad argument ok 22 - getFeature throws exception with argument ok 23 - setFeature throws exception with no argument ok 24 - setFeature throws exception with too many argument ok 25 - setFeature accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - feature->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - feature->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::FeatureDefect' isa 'Bio::MAGE::Extendable' ok t/FeatureDimension.t ............. 1..107 ok 1 - use Bio::MAGE::BioAssayData::FeatureDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::FeatureDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - containedFeatures set in new() ok 88 - setContainedFeatures returns correct value ok 89 - getContainedFeatures fetches correct value ok 90 - addContainedFeatures returns number of items in list ok 91 - addContainedFeatures adds correct value ok 92 - setContainedFeatures throws exception with non-array argument ok 93 - setContainedFeatures throws exception with bad argument array ok 94 - addContainedFeatures throws exception with no arguments ok 95 - addContainedFeatures throws exception with bad array ok 96 - setContainedFeatures accepts empty array ref ok 97 - getContainedFeatures throws exception with argument ok 98 - setContainedFeatures throws exception with no argument ok 99 - setContainedFeatures throws exception with too many argument ok 100 - setContainedFeatures accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - containedFeatures->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - containedFeatures->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::FeatureDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/FeatureExtraction.t ............ 1..133 ok 1 - use Bio::MAGE::BioAssay::FeatureExtraction; ok 2 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 18 - setPhysicalBioAssaySource returns value ok 19 - getPhysicalBioAssaySource fetches correct value ok 20 - setPhysicalBioAssaySource throws exception with bad argument ok 21 - getPhysicalBioAssaySource throws exception with argument ok 22 - setPhysicalBioAssaySource throws exception with no argument ok 23 - setPhysicalBioAssaySource throws exception with too many argument ok 24 - setPhysicalBioAssaySource accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - physicalBioAssaySource->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - physicalBioAssaySource->self() is a valid Bio::MAGE::Association::End ok 30 - protocolApplications set in new() ok 31 - setProtocolApplications returns correct value ok 32 - getProtocolApplications fetches correct value ok 33 - addProtocolApplications returns number of items in list ok 34 - addProtocolApplications adds correct value ok 35 - setProtocolApplications throws exception with non-array argument ok 36 - setProtocolApplications throws exception with bad argument array ok 37 - addProtocolApplications throws exception with no arguments ok 38 - addProtocolApplications throws exception with bad array ok 39 - setProtocolApplications accepts empty array ref ok 40 - getProtocolApplications throws exception with argument ok 41 - setProtocolApplications throws exception with no argument ok 42 - setProtocolApplications throws exception with too many argument ok 43 - setProtocolApplications accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 50 - setMeasuredBioAssayTarget returns value ok 51 - getMeasuredBioAssayTarget fetches correct value ok 52 - setMeasuredBioAssayTarget throws exception with bad argument ok 53 - getMeasuredBioAssayTarget throws exception with argument ok 54 - setMeasuredBioAssayTarget throws exception with no argument ok 55 - setMeasuredBioAssayTarget throws exception with too many argument ok 56 - setMeasuredBioAssayTarget accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - measuredBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - measuredBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 133 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/FeatureGroup.t ................. 1..196 ok 1 - use Bio::MAGE::ArrayDesign::FeatureGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::FeatureGroup' ok 3 - package ok 4 - class_name ok 5 - featureLength new ok 6 - featureLength getter/setter ok 7 - featureLength getter throws exception with argument ok 8 - featureLength setter throws exception with no argument ok 9 - featureLength setter throws exception with too many argument ok 10 - featureLength setter accepts undef ok 11 - featureWidth new ok 12 - featureWidth getter/setter ok 13 - featureWidth getter throws exception with argument ok 14 - featureWidth setter throws exception with no argument ok 15 - featureWidth setter throws exception with too many argument ok 16 - featureWidth setter accepts undef ok 17 - identifier new ok 18 - identifier getter/setter ok 19 - identifier getter throws exception with argument ok 20 - identifier setter throws exception with no argument ok 21 - identifier setter throws exception with too many argument ok 22 - identifier setter accepts undef ok 23 - featureHeight new ok 24 - featureHeight getter/setter ok 25 - featureHeight getter throws exception with argument ok 26 - featureHeight setter throws exception with no argument ok 27 - featureHeight setter throws exception with too many argument ok 28 - featureHeight setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - types set in new() ok 36 - setTypes returns correct value ok 37 - getTypes fetches correct value ok 38 - addTypes returns number of items in list ok 39 - addTypes adds correct value ok 40 - setTypes throws exception with non-array argument ok 41 - setTypes throws exception with bad argument array ok 42 - addTypes throws exception with no arguments ok 43 - addTypes throws exception with bad array ok 44 - setTypes accepts empty array ref ok 45 - getTypes throws exception with argument ok 46 - setTypes throws exception with no argument ok 47 - setTypes throws exception with too many argument ok 48 - setTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - types->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - types->self() is a valid Bio::MAGE::Association::End ok 54 - features set in new() ok 55 - setFeatures returns correct value ok 56 - getFeatures fetches correct value ok 57 - addFeatures returns number of items in list ok 58 - addFeatures adds correct value ok 59 - setFeatures throws exception with non-array argument ok 60 - setFeatures throws exception with bad argument array ok 61 - addFeatures throws exception with no arguments ok 62 - addFeatures throws exception with bad array ok 63 - setFeatures accepts empty array ref ok 64 - getFeatures throws exception with argument ok 65 - setFeatures throws exception with no argument ok 66 - setFeatures throws exception with too many argument ok 67 - setFeatures accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - features->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - features->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 74 - setFeatureShape returns value ok 75 - getFeatureShape fetches correct value ok 76 - setFeatureShape throws exception with bad argument ok 77 - getFeatureShape throws exception with argument ok 78 - setFeatureShape throws exception with no argument ok 79 - setFeatureShape throws exception with too many argument ok 80 - setFeatureShape accepts undef ok 81 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 82 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 83 - featureShape->other() is a valid Bio::MAGE::Association::End ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - featureShape->self() is a valid Bio::MAGE::Association::End ok 86 - auditTrail set in new() ok 87 - setAuditTrail returns correct value ok 88 - getAuditTrail fetches correct value ok 89 - addAuditTrail returns number of items in list ok 90 - addAuditTrail adds correct value ok 91 - setAuditTrail throws exception with non-array argument ok 92 - setAuditTrail throws exception with bad argument array ok 93 - addAuditTrail throws exception with no arguments ok 94 - addAuditTrail throws exception with bad array ok 95 - setAuditTrail accepts empty array ref ok 96 - getAuditTrail throws exception with argument ok 97 - setAuditTrail throws exception with no argument ok 98 - setAuditTrail throws exception with too many argument ok 99 - setAuditTrail accepts undef ok 100 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 101 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 102 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 103 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 104 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 105 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 106 - setTechnologyType returns value ok 107 - getTechnologyType fetches correct value ok 108 - setTechnologyType throws exception with bad argument ok 109 - getTechnologyType throws exception with argument ok 110 - setTechnologyType throws exception with no argument ok 111 - setTechnologyType throws exception with too many argument ok 112 - setTechnologyType accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - technologyType->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - technologyType->self() is a valid Bio::MAGE::Association::End ok 118 - propertySets set in new() ok 119 - setPropertySets returns correct value ok 120 - getPropertySets fetches correct value ok 121 - addPropertySets returns number of items in list ok 122 - addPropertySets adds correct value ok 123 - setPropertySets throws exception with non-array argument ok 124 - setPropertySets throws exception with bad argument array ok 125 - addPropertySets throws exception with no arguments ok 126 - addPropertySets throws exception with bad array ok 127 - setPropertySets accepts empty array ref ok 128 - getPropertySets throws exception with argument ok 129 - setPropertySets throws exception with no argument ok 130 - setPropertySets throws exception with too many argument ok 131 - setPropertySets accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - propertySets->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - propertySets->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 138 - setSpecies returns value ok 139 - getSpecies fetches correct value ok 140 - setSpecies throws exception with bad argument ok 141 - getSpecies throws exception with argument ok 142 - setSpecies throws exception with no argument ok 143 - setSpecies throws exception with too many argument ok 144 - setSpecies accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - species->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - species->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 151 - setDistanceUnit returns value ok 152 - getDistanceUnit fetches correct value ok 153 - setDistanceUnit throws exception with bad argument ok 154 - getDistanceUnit throws exception with argument ok 155 - setDistanceUnit throws exception with no argument ok 156 - setDistanceUnit throws exception with too many argument ok 157 - setDistanceUnit accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 163 - descriptions set in new() ok 164 - setDescriptions returns correct value ok 165 - getDescriptions fetches correct value ok 166 - addDescriptions returns number of items in list ok 167 - addDescriptions adds correct value ok 168 - setDescriptions throws exception with non-array argument ok 169 - setDescriptions throws exception with bad argument array ok 170 - addDescriptions throws exception with no arguments ok 171 - addDescriptions throws exception with bad array ok 172 - setDescriptions accepts empty array ref ok 173 - getDescriptions throws exception with argument ok 174 - setDescriptions throws exception with no argument ok 175 - setDescriptions throws exception with too many argument ok 176 - setDescriptions accepts undef ok 177 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 178 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 179 - descriptions->other() is a valid Bio::MAGE::Association::End ok 180 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 181 - descriptions->self() is a valid Bio::MAGE::Association::End ok 182 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 183 - setSecurity returns value ok 184 - getSecurity fetches correct value ok 185 - setSecurity throws exception with bad argument ok 186 - getSecurity throws exception with argument ok 187 - setSecurity throws exception with no argument ok 188 - setSecurity throws exception with too many argument ok 189 - setSecurity accepts undef ok 190 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 191 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 192 - security->other() is a valid Bio::MAGE::Association::End ok 193 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 194 - security->self() is a valid Bio::MAGE::Association::End ok 195 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 196 - An object of class 'Bio::MAGE::ArrayDesign::FeatureGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/FeatureInformation.t ........... 1..57 ok 1 - use Bio::MAGE::DesignElement::FeatureInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::DesignElement::FeatureInformation' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 6 - setFeature returns value ok 7 - getFeature fetches correct value ok 8 - setFeature throws exception with bad argument ok 9 - getFeature throws exception with argument ok 10 - setFeature throws exception with no argument ok 11 - setFeature throws exception with too many argument ok 12 - setFeature accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - feature->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - feature->self() is a valid Bio::MAGE::Association::End ok 18 - propertySets set in new() ok 19 - setPropertySets returns correct value ok 20 - getPropertySets fetches correct value ok 21 - addPropertySets returns number of items in list ok 22 - addPropertySets adds correct value ok 23 - setPropertySets throws exception with non-array argument ok 24 - setPropertySets throws exception with bad argument array ok 25 - addPropertySets throws exception with no arguments ok 26 - addPropertySets throws exception with bad array ok 27 - setPropertySets accepts empty array ref ok 28 - getPropertySets throws exception with argument ok 29 - setPropertySets throws exception with no argument ok 30 - setPropertySets throws exception with too many argument ok 31 - setPropertySets accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - propertySets->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - propertySets->self() is a valid Bio::MAGE::Association::End ok 37 - mismatchInformation set in new() ok 38 - setMismatchInformation returns correct value ok 39 - getMismatchInformation fetches correct value ok 40 - addMismatchInformation returns number of items in list ok 41 - addMismatchInformation adds correct value ok 42 - setMismatchInformation throws exception with non-array argument ok 43 - setMismatchInformation throws exception with bad argument array ok 44 - addMismatchInformation throws exception with no arguments ok 45 - addMismatchInformation throws exception with bad array ok 46 - setMismatchInformation accepts empty array ref ok 47 - getMismatchInformation throws exception with argument ok 48 - setMismatchInformation throws exception with no argument ok 49 - setMismatchInformation throws exception with too many argument ok 50 - setMismatchInformation accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 56 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 57 - An object of class 'Bio::MAGE::DesignElement::FeatureInformation' isa 'Bio::MAGE::Extendable' ok t/FeatureLocation.t .............. 1..37 ok 1 - use Bio::MAGE::DesignElement::FeatureLocation; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::DesignElement::FeatureLocation' ok 3 - package ok 4 - class_name ok 5 - row new ok 6 - row getter/setter ok 7 - row getter throws exception with argument ok 8 - row setter throws exception with no argument ok 9 - row setter throws exception with too many argument ok 10 - row setter accepts undef ok 11 - column new ok 12 - column getter/setter ok 13 - column getter throws exception with argument ok 14 - column setter throws exception with no argument ok 15 - column setter throws exception with too many argument ok 16 - column setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 37 - An object of class 'Bio::MAGE::DesignElement::FeatureLocation' isa 'Bio::MAGE::Extendable' ok t/FeatureReporterMap.t ........... 1..139 ok 1 - use Bio::MAGE::DesignElement::FeatureReporterMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::DesignElement::FeatureReporterMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 107 - setReporter returns value ok 108 - getReporter fetches correct value ok 109 - setReporter throws exception with bad argument ok 110 - getReporter throws exception with argument ok 111 - setReporter throws exception with no argument ok 112 - setReporter throws exception with too many argument ok 113 - setReporter accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - reporter->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - reporter->self() is a valid Bio::MAGE::Association::End ok 119 - featureInformationSources set in new() ok 120 - setFeatureInformationSources returns correct value ok 121 - getFeatureInformationSources fetches correct value ok 122 - addFeatureInformationSources returns number of items in list ok 123 - addFeatureInformationSources adds correct value ok 124 - setFeatureInformationSources throws exception with non-array argument ok 125 - setFeatureInformationSources throws exception with bad argument array ok 126 - addFeatureInformationSources throws exception with no arguments ok 127 - addFeatureInformationSources throws exception with bad array ok 128 - setFeatureInformationSources accepts empty array ref ok 129 - getFeatureInformationSources throws exception with argument ok 130 - setFeatureInformationSources throws exception with no argument ok 131 - setFeatureInformationSources throws exception with too many argument ok 132 - setFeatureInformationSources accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - featureInformationSources->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - featureInformationSources->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::FeatureReporterMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/Fiducial.t ..................... 1..115 ok 1 - use Bio::MAGE::Array::Fiducial; ok 2 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Array::Fiducial' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 6 - setDistanceUnit returns value ok 7 - getDistanceUnit fetches correct value ok 8 - setDistanceUnit throws exception with bad argument ok 9 - getDistanceUnit throws exception with argument ok 10 - setDistanceUnit throws exception with no argument ok 11 - setDistanceUnit throws exception with too many argument ok 12 - setDistanceUnit accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 18 - descriptions set in new() ok 19 - setDescriptions returns correct value ok 20 - getDescriptions fetches correct value ok 21 - addDescriptions returns number of items in list ok 22 - addDescriptions adds correct value ok 23 - setDescriptions throws exception with non-array argument ok 24 - setDescriptions throws exception with bad argument array ok 25 - addDescriptions throws exception with no arguments ok 26 - addDescriptions throws exception with bad array ok 27 - setDescriptions accepts empty array ref ok 28 - getDescriptions throws exception with argument ok 29 - setDescriptions throws exception with no argument ok 30 - setDescriptions throws exception with too many argument ok 31 - setDescriptions accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - descriptions->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - descriptions->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 38 - setPosition returns value ok 39 - getPosition fetches correct value ok 40 - setPosition throws exception with bad argument ok 41 - getPosition throws exception with argument ok 42 - setPosition throws exception with no argument ok 43 - setPosition throws exception with too many argument ok 44 - setPosition accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - position->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - position->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 102 - setFiducialType returns value ok 103 - getFiducialType fetches correct value ok 104 - setFiducialType throws exception with bad argument ok 105 - getFiducialType throws exception with argument ok 106 - setFiducialType throws exception with no argument ok 107 - setFiducialType throws exception with too many argument ok 108 - setFiducialType accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - fiducialType->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - fiducialType->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::Array::Fiducial' isa 'Bio::MAGE::Describable' ok t/Hardware.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Hardware; ok 2 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 3 - package ok 4 - class_name ok 5 - make new ok 6 - make getter/setter ok 7 - make getter throws exception with argument ok 8 - make setter throws exception with no argument ok 9 - make setter throws exception with too many argument ok 10 - make setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - model new ok 24 - model getter/setter ok 25 - model getter throws exception with argument ok 26 - model setter throws exception with no argument ok 27 - model setter throws exception with too many argument ok 28 - model setter accepts undef ok 29 - name new ok 30 - name getter/setter ok 31 - name getter throws exception with argument ok 32 - name setter throws exception with no argument ok 33 - name setter throws exception with too many argument ok 34 - name setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwareManufacturers set in new() ok 93 - setHardwareManufacturers returns correct value ok 94 - getHardwareManufacturers fetches correct value ok 95 - addHardwareManufacturers returns number of items in list ok 96 - addHardwareManufacturers adds correct value ok 97 - setHardwareManufacturers throws exception with non-array argument ok 98 - setHardwareManufacturers throws exception with bad argument array ok 99 - addHardwareManufacturers throws exception with no arguments ok 100 - addHardwareManufacturers throws exception with bad array ok 101 - setHardwareManufacturers accepts empty array ref ok 102 - getHardwareManufacturers throws exception with argument ok 103 - setHardwareManufacturers throws exception with no argument ok 104 - setHardwareManufacturers throws exception with too many argument ok 105 - setHardwareManufacturers accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/HardwareApplication.t .......... 1..114 ok 1 - use Bio::MAGE::Protocol::HardwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 3 - package ok 4 - class_name ok 5 - serialNumber new ok 6 - serialNumber getter/setter ok 7 - serialNumber getter throws exception with argument ok 8 - serialNumber setter throws exception with no argument ok 9 - serialNumber setter throws exception with too many argument ok 10 - serialNumber setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 12 - setHardware returns value ok 13 - getHardware fetches correct value ok 14 - setHardware throws exception with bad argument ok 15 - getHardware throws exception with argument ok 16 - setHardware throws exception with no argument ok 17 - setHardware throws exception with too many argument ok 18 - setHardware accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - hardware->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - hardware->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - auditTrail set in new() ok 57 - setAuditTrail returns correct value ok 58 - getAuditTrail fetches correct value ok 59 - addAuditTrail returns number of items in list ok 60 - addAuditTrail adds correct value ok 61 - setAuditTrail throws exception with non-array argument ok 62 - setAuditTrail throws exception with bad argument array ok 63 - addAuditTrail throws exception with no arguments ok 64 - addAuditTrail throws exception with bad array ok 65 - setAuditTrail accepts empty array ref ok 66 - getAuditTrail throws exception with argument ok 67 - setAuditTrail throws exception with no argument ok 68 - setAuditTrail throws exception with too many argument ok 69 - setAuditTrail accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 75 - propertySets set in new() ok 76 - setPropertySets returns correct value ok 77 - getPropertySets fetches correct value ok 78 - addPropertySets returns number of items in list ok 79 - addPropertySets adds correct value ok 80 - setPropertySets throws exception with non-array argument ok 81 - setPropertySets throws exception with bad argument array ok 82 - addPropertySets throws exception with no arguments ok 83 - addPropertySets throws exception with bad array ok 84 - setPropertySets accepts empty array ref ok 85 - getPropertySets throws exception with argument ok 86 - setPropertySets throws exception with no argument ok 87 - setPropertySets throws exception with too many argument ok 88 - setPropertySets accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - propertySets->self() is a valid Bio::MAGE::Association::End ok 94 - parameterValues set in new() ok 95 - setParameterValues returns correct value ok 96 - getParameterValues fetches correct value ok 97 - addParameterValues returns number of items in list ok 98 - addParameterValues adds correct value ok 99 - setParameterValues throws exception with non-array argument ok 100 - setParameterValues throws exception with bad argument array ok 101 - addParameterValues throws exception with no arguments ok 102 - addParameterValues throws exception with bad array ok 103 - setParameterValues accepts empty array ref ok 104 - getParameterValues throws exception with argument ok 105 - setParameterValues throws exception with no argument ok 106 - setParameterValues throws exception with too many argument ok 107 - setParameterValues accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 114 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/HigherLevelAnalysis_package.t .. 1..15 ok 1 - use Bio::MAGE::HigherLevelAnalysis; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 4 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 5 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 6 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 7 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 8 - tagname ok 9 - xml_lists ok 10 - A reference of type 'ARRAY' isa 'ARRAY' ok 11 - bioassaydatacluster_list empty ok 12 - A reference of type 'ARRAY' isa 'ARRAY' ok 13 - getBioAssayDataCluster_list empty ok 14 - A reference of type 'ARRAY' isa 'ARRAY' ok 15 - getBioAssayDataCluster_list not empty ok t/Hybridization.t ................ 1..152 ok 1 - use Bio::MAGE::BioAssay::Hybridization; ok 2 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::Hybridization' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - sourceBioMaterialMeasurements set in new() ok 18 - setSourceBioMaterialMeasurements returns correct value ok 19 - getSourceBioMaterialMeasurements fetches correct value ok 20 - addSourceBioMaterialMeasurements returns number of items in list ok 21 - addSourceBioMaterialMeasurements adds correct value ok 22 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 23 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 24 - addSourceBioMaterialMeasurements throws exception with no arguments ok 25 - addSourceBioMaterialMeasurements throws exception with bad array ok 26 - setSourceBioMaterialMeasurements accepts empty array ref ok 27 - getSourceBioMaterialMeasurements throws exception with argument ok 28 - setSourceBioMaterialMeasurements throws exception with no argument ok 29 - setSourceBioMaterialMeasurements throws exception with too many argument ok 30 - setSourceBioMaterialMeasurements accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 94 - setArray returns value ok 95 - getArray fetches correct value ok 96 - setArray throws exception with bad argument ok 97 - getArray throws exception with argument ok 98 - setArray throws exception with no argument ok 99 - setArray throws exception with too many argument ok 100 - setArray accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - array->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - array->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 139 - setPhysicalBioAssayTarget returns value ok 140 - getPhysicalBioAssayTarget fetches correct value ok 141 - setPhysicalBioAssayTarget throws exception with bad argument ok 142 - getPhysicalBioAssayTarget throws exception with argument ok 143 - setPhysicalBioAssayTarget throws exception with no argument ok 144 - setPhysicalBioAssayTarget throws exception with too many argument ok 145 - setPhysicalBioAssayTarget accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - physicalBioAssayTarget->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - physicalBioAssayTarget->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 152 - An object of class 'Bio::MAGE::BioAssay::Hybridization' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok t/Identifiable.t ................. 1..146 ok 1 - use Bio::MAGE::Identifiable; ok 2 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - descriptions set in new() ok 18 - setDescriptions returns correct value ok 19 - getDescriptions fetches correct value ok 20 - addDescriptions returns number of items in list ok 21 - addDescriptions adds correct value ok 22 - setDescriptions throws exception with non-array argument ok 23 - setDescriptions throws exception with bad argument array ok 24 - addDescriptions throws exception with no arguments ok 25 - addDescriptions throws exception with bad array ok 26 - setDescriptions accepts empty array ref ok 27 - getDescriptions throws exception with argument ok 28 - setDescriptions throws exception with no argument ok 29 - setDescriptions throws exception with too many argument ok 30 - setDescriptions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - descriptions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - descriptions->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 88 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok 89 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 90 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::Identifiable' ok 91 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Description::Database' ok 92 - An object of class 'Bio::MAGE::Description::Database' isa 'Bio::MAGE::Identifiable' ok 93 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 94 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok 95 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 96 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::Identifiable' ok 97 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 98 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::Identifiable' ok 99 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok 101 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 102 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::Identifiable' ok 103 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 104 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok 105 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 106 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 108 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::Identifiable' ok 109 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 110 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::Identifiable' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 112 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::Identifiable' ok 113 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 114 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok 115 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 116 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::Identifiable' ok 117 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Array::Array' ok 118 - An object of class 'Bio::MAGE::Array::Array' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Array::ArrayGroup' ok 120 - An object of class 'Bio::MAGE::Array::ArrayGroup' isa 'Bio::MAGE::Identifiable' ok 121 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 122 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::Identifiable' ok 123 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Array::ArrayManufacture' ok 124 - An object of class 'Bio::MAGE::Array::ArrayManufacture' isa 'Bio::MAGE::Identifiable' ok 125 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 126 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::Identifiable' ok 127 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Experiment::Experiment' ok 128 - An object of class 'Bio::MAGE::Experiment::Experiment' isa 'Bio::MAGE::Identifiable' ok 129 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Experiment::ExperimentalFactor' ok 130 - An object of class 'Bio::MAGE::Experiment::ExperimentalFactor' isa 'Bio::MAGE::Identifiable' ok 131 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Experiment::FactorValue' ok 132 - An object of class 'Bio::MAGE::Experiment::FactorValue' isa 'Bio::MAGE::Identifiable' ok 133 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 134 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok 135 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 136 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::BioMaterial::Compound' ok 138 - An object of class 'Bio::MAGE::BioMaterial::Compound' isa 'Bio::MAGE::Identifiable' ok 139 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::BioSequence::BioSequence' ok 140 - An object of class 'Bio::MAGE::BioSequence::BioSequence' isa 'Bio::MAGE::Identifiable' ok 141 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 142 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok 143 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' ok 144 - An object of class 'Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster' isa 'Bio::MAGE::Identifiable' ok 145 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 146 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Describable' ok t/Image.t ........................ 1..126 ok 1 - use Bio::MAGE::BioAssay::Image; ok 2 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::BioAssay::Image' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - channels set in new() ok 24 - setChannels returns correct value ok 25 - getChannels fetches correct value ok 26 - addChannels returns number of items in list ok 27 - addChannels adds correct value ok 28 - setChannels throws exception with non-array argument ok 29 - setChannels throws exception with bad argument array ok 30 - addChannels throws exception with no arguments ok 31 - addChannels throws exception with bad array ok 32 - setChannels accepts empty array ref ok 33 - getChannels throws exception with argument ok 34 - setChannels throws exception with no argument ok 35 - setChannels throws exception with too many argument ok 36 - setChannels accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - channels->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - channels->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setFormat returns value ok 44 - getFormat fetches correct value ok 45 - setFormat throws exception with bad argument ok 46 - getFormat throws exception with argument ok 47 - setFormat throws exception with no argument ok 48 - setFormat throws exception with too many argument ok 49 - setFormat accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - format->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - format->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::BioAssay::Image' isa 'Bio::MAGE::Identifiable' ok t/ImageAcquisition.t ............. 1..152 ok 1 - use Bio::MAGE::BioAssay::ImageAcquisition; ok 2 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::ImageAcquisition' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - images set in new() ok 18 - setImages returns correct value ok 19 - getImages fetches correct value ok 20 - addImages returns number of items in list ok 21 - addImages adds correct value ok 22 - setImages throws exception with non-array argument ok 23 - setImages throws exception with bad argument array ok 24 - addImages throws exception with no arguments ok 25 - addImages throws exception with bad array ok 26 - setImages accepts empty array ref ok 27 - getImages throws exception with argument ok 28 - setImages throws exception with no argument ok 29 - setImages throws exception with too many argument ok 30 - setImages accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - images->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - images->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - protocolApplications set in new() ok 75 - setProtocolApplications returns correct value ok 76 - getProtocolApplications fetches correct value ok 77 - addProtocolApplications returns number of items in list ok 78 - addProtocolApplications adds correct value ok 79 - setProtocolApplications throws exception with non-array argument ok 80 - setProtocolApplications throws exception with bad argument array ok 81 - addProtocolApplications throws exception with no arguments ok 82 - addProtocolApplications throws exception with bad array ok 83 - setProtocolApplications accepts empty array ref ok 84 - getProtocolApplications throws exception with argument ok 85 - setProtocolApplications throws exception with no argument ok 86 - setProtocolApplications throws exception with too many argument ok 87 - setProtocolApplications accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 94 - setTarget returns value ok 95 - getTarget fetches correct value ok 96 - setTarget throws exception with bad argument ok 97 - getTarget throws exception with argument ok 98 - setTarget throws exception with no argument ok 99 - setTarget throws exception with too many argument ok 100 - setTarget accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - target->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - target->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 107 - setPhysicalBioAssay returns value ok 108 - getPhysicalBioAssay fetches correct value ok 109 - setPhysicalBioAssay throws exception with bad argument ok 110 - getPhysicalBioAssay throws exception with argument ok 111 - setPhysicalBioAssay throws exception with no argument ok 112 - setPhysicalBioAssay throws exception with too many argument ok 113 - setPhysicalBioAssay accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - physicalBioAssay->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - physicalBioAssay->self() is a valid Bio::MAGE::Association::End ok 119 - descriptions set in new() ok 120 - setDescriptions returns correct value ok 121 - getDescriptions fetches correct value ok 122 - addDescriptions returns number of items in list ok 123 - addDescriptions adds correct value ok 124 - setDescriptions throws exception with non-array argument ok 125 - setDescriptions throws exception with bad argument array ok 126 - addDescriptions throws exception with no arguments ok 127 - addDescriptions throws exception with bad array ok 128 - setDescriptions accepts empty array ref ok 129 - getDescriptions throws exception with argument ok 130 - setDescriptions throws exception with no argument ok 131 - setDescriptions throws exception with too many argument ok 132 - setDescriptions accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - descriptions->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - descriptions->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 139 - setSecurity returns value ok 140 - getSecurity fetches correct value ok 141 - setSecurity throws exception with bad argument ok 142 - getSecurity throws exception with argument ok 143 - setSecurity throws exception with no argument ok 144 - setSecurity throws exception with too many argument ok 145 - setSecurity accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - security->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - security->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssay::BioAssayTreatment' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok 152 - An object of class 'Bio::MAGE::BioAssay::ImageAcquisition' isa 'Bio::MAGE::BioAssay::BioAssayTreatment' ok t/LabeledExtract.t ............... 1..177 ok 1 - use Bio::MAGE::BioMaterial::LabeledExtract; ok 2 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::LabeledExtract' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - auditTrail set in new() ok 18 - setAuditTrail returns correct value ok 19 - getAuditTrail fetches correct value ok 20 - addAuditTrail returns number of items in list ok 21 - addAuditTrail adds correct value ok 22 - setAuditTrail throws exception with non-array argument ok 23 - setAuditTrail throws exception with bad argument array ok 24 - addAuditTrail throws exception with no arguments ok 25 - addAuditTrail throws exception with bad array ok 26 - setAuditTrail accepts empty array ref ok 27 - getAuditTrail throws exception with argument ok 28 - setAuditTrail throws exception with no argument ok 29 - setAuditTrail throws exception with too many argument ok 30 - setAuditTrail accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 36 - propertySets set in new() ok 37 - setPropertySets returns correct value ok 38 - getPropertySets fetches correct value ok 39 - addPropertySets returns number of items in list ok 40 - addPropertySets adds correct value ok 41 - setPropertySets throws exception with non-array argument ok 42 - setPropertySets throws exception with bad argument array ok 43 - addPropertySets throws exception with no arguments ok 44 - addPropertySets throws exception with bad array ok 45 - setPropertySets accepts empty array ref ok 46 - getPropertySets throws exception with argument ok 47 - setPropertySets throws exception with no argument ok 48 - setPropertySets throws exception with too many argument ok 49 - setPropertySets accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - propertySets->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - propertySets->self() is a valid Bio::MAGE::Association::End ok 55 - qualityControlStatistics set in new() ok 56 - setQualityControlStatistics returns correct value ok 57 - getQualityControlStatistics fetches correct value ok 58 - addQualityControlStatistics returns number of items in list ok 59 - addQualityControlStatistics adds correct value ok 60 - setQualityControlStatistics throws exception with non-array argument ok 61 - setQualityControlStatistics throws exception with bad argument array ok 62 - addQualityControlStatistics throws exception with no arguments ok 63 - addQualityControlStatistics throws exception with bad array ok 64 - setQualityControlStatistics accepts empty array ref ok 65 - getQualityControlStatistics throws exception with argument ok 66 - setQualityControlStatistics throws exception with no argument ok 67 - setQualityControlStatistics throws exception with too many argument ok 68 - setQualityControlStatistics accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - qualityControlStatistics->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - qualityControlStatistics->self() is a valid Bio::MAGE::Association::End ok 74 - descriptions set in new() ok 75 - setDescriptions returns correct value ok 76 - getDescriptions fetches correct value ok 77 - addDescriptions returns number of items in list ok 78 - addDescriptions adds correct value ok 79 - setDescriptions throws exception with non-array argument ok 80 - setDescriptions throws exception with bad argument array ok 81 - addDescriptions throws exception with no arguments ok 82 - addDescriptions throws exception with bad array ok 83 - setDescriptions accepts empty array ref ok 84 - getDescriptions throws exception with argument ok 85 - setDescriptions throws exception with no argument ok 86 - setDescriptions throws exception with too many argument ok 87 - setDescriptions accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - descriptions->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - descriptions->self() is a valid Bio::MAGE::Association::End ok 93 - characteristics set in new() ok 94 - setCharacteristics returns correct value ok 95 - getCharacteristics fetches correct value ok 96 - addCharacteristics returns number of items in list ok 97 - addCharacteristics adds correct value ok 98 - setCharacteristics throws exception with non-array argument ok 99 - setCharacteristics throws exception with bad argument array ok 100 - addCharacteristics throws exception with no arguments ok 101 - addCharacteristics throws exception with bad array ok 102 - setCharacteristics accepts empty array ref ok 103 - getCharacteristics throws exception with argument ok 104 - setCharacteristics throws exception with no argument ok 105 - setCharacteristics throws exception with too many argument ok 106 - setCharacteristics accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - characteristics->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - characteristics->self() is a valid Bio::MAGE::Association::End ok 112 - treatments set in new() ok 113 - setTreatments returns correct value ok 114 - getTreatments fetches correct value ok 115 - addTreatments returns number of items in list ok 116 - addTreatments adds correct value ok 117 - setTreatments throws exception with non-array argument ok 118 - setTreatments throws exception with bad argument array ok 119 - addTreatments throws exception with no arguments ok 120 - addTreatments throws exception with bad array ok 121 - setTreatments accepts empty array ref ok 122 - getTreatments throws exception with argument ok 123 - setTreatments throws exception with no argument ok 124 - setTreatments throws exception with too many argument ok 125 - setTreatments accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - treatments->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - treatments->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 132 - setSecurity returns value ok 133 - getSecurity fetches correct value ok 134 - setSecurity throws exception with bad argument ok 135 - getSecurity throws exception with argument ok 136 - setSecurity throws exception with no argument ok 137 - setSecurity throws exception with too many argument ok 138 - setSecurity accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - security->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - security->self() is a valid Bio::MAGE::Association::End ok 144 - labels set in new() ok 145 - setLabels returns correct value ok 146 - getLabels fetches correct value ok 147 - addLabels returns number of items in list ok 148 - addLabels adds correct value ok 149 - setLabels throws exception with non-array argument ok 150 - setLabels throws exception with bad argument array ok 151 - addLabels throws exception with no arguments ok 152 - addLabels throws exception with bad array ok 153 - setLabels accepts empty array ref ok 154 - getLabels throws exception with argument ok 155 - setLabels throws exception with no argument ok 156 - setLabels throws exception with too many argument ok 157 - setLabels accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - labels->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - labels->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setMaterialType returns value ok 165 - getMaterialType fetches correct value ok 166 - setMaterialType throws exception with bad argument ok 167 - getMaterialType throws exception with argument ok 168 - setMaterialType throws exception with no argument ok 169 - setMaterialType throws exception with too many argument ok 170 - setMaterialType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - materialType->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - materialType->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 177 - An object of class 'Bio::MAGE::BioMaterial::LabeledExtract' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok t/MAGE_package.t ................. 1..29 ok 1 - use Bio::MAGE; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 4 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 5 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 6 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 7 - An object of class 'Bio::MAGE' isa 'Bio::MAGE' ok 8 - tagname ok 9 - package count ok 10 ok 11 - identifiers ok 12 - objects ok 13 - An object of class 'Bio::MAGE::AuditAndSecurity' isa 'Bio::MAGE::AuditAndSecurity' ok 14 - An object of class 'Bio::MAGE::Description' isa 'Bio::MAGE::Description' ok 15 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 16 - An object of class 'Bio::MAGE::BQS' isa 'Bio::MAGE::BQS' ok 17 - An object of class 'Bio::MAGE::BioEvent' isa 'Bio::MAGE::BioEvent' ok 18 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 19 - An object of class 'Bio::MAGE::BioMaterial' isa 'Bio::MAGE::BioMaterial' ok 20 - An object of class 'Bio::MAGE::BioSequence' isa 'Bio::MAGE::BioSequence' ok 21 - An object of class 'Bio::MAGE::DesignElement' isa 'Bio::MAGE::DesignElement' ok 22 - An object of class 'Bio::MAGE::ArrayDesign' isa 'Bio::MAGE::ArrayDesign' ok 23 - An object of class 'Bio::MAGE::Array' isa 'Bio::MAGE::Array' ok 24 - An object of class 'Bio::MAGE::BioAssay' isa 'Bio::MAGE::BioAssay' ok 25 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 26 - An object of class 'Bio::MAGE::BioAssayData' isa 'Bio::MAGE::BioAssayData' ok 27 - An object of class 'Bio::MAGE::Experiment' isa 'Bio::MAGE::Experiment' ok 28 - An object of class 'Bio::MAGE::HigherLevelAnalysis' isa 'Bio::MAGE::HigherLevelAnalysis' ok 29 - package list count ok t/ManufactureLIMS.t .............. 1..123 ok 1 - use Bio::MAGE::Array::ManufactureLIMS; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 3 - package ok 4 - class_name ok 5 - quality new ok 6 - quality getter/setter ok 7 - quality getter throws exception with argument ok 8 - quality setter throws exception with no argument ok 9 - quality setter throws exception with too many argument ok 10 - quality setter accepts undef ok 11 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 12 - setFeature returns value ok 13 - getFeature fetches correct value ok 14 - setFeature throws exception with bad argument ok 15 - getFeature throws exception with argument ok 16 - setFeature throws exception with no argument ok 17 - setFeature throws exception with too many argument ok 18 - setFeature accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - feature->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - feature->self() is a valid Bio::MAGE::Association::End ok 24 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 25 - setIdentifierLIMS returns value ok 26 - getIdentifierLIMS fetches correct value ok 27 - setIdentifierLIMS throws exception with bad argument ok 28 - getIdentifierLIMS throws exception with argument ok 29 - setIdentifierLIMS throws exception with no argument ok 30 - setIdentifierLIMS throws exception with too many argument ok 31 - setIdentifierLIMS accepts undef ok 32 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 33 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 34 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 35 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 36 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 37 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 38 - setBioMaterial returns value ok 39 - getBioMaterial fetches correct value ok 40 - setBioMaterial throws exception with bad argument ok 41 - getBioMaterial throws exception with argument ok 42 - setBioMaterial throws exception with no argument ok 43 - setBioMaterial throws exception with too many argument ok 44 - setBioMaterial accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 50 - descriptions set in new() ok 51 - setDescriptions returns correct value ok 52 - getDescriptions fetches correct value ok 53 - addDescriptions returns number of items in list ok 54 - addDescriptions adds correct value ok 55 - setDescriptions throws exception with non-array argument ok 56 - setDescriptions throws exception with bad argument array ok 57 - addDescriptions throws exception with no arguments ok 58 - addDescriptions throws exception with bad array ok 59 - setDescriptions accepts empty array ref ok 60 - getDescriptions throws exception with argument ok 61 - setDescriptions throws exception with no argument ok 62 - setDescriptions throws exception with too many argument ok 63 - setDescriptions accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - descriptions->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - descriptions->self() is a valid Bio::MAGE::Association::End ok 69 - auditTrail set in new() ok 70 - setAuditTrail returns correct value ok 71 - getAuditTrail fetches correct value ok 72 - addAuditTrail returns number of items in list ok 73 - addAuditTrail adds correct value ok 74 - setAuditTrail throws exception with non-array argument ok 75 - setAuditTrail throws exception with bad argument array ok 76 - addAuditTrail throws exception with no arguments ok 77 - addAuditTrail throws exception with bad array ok 78 - setAuditTrail accepts empty array ref ok 79 - getAuditTrail throws exception with argument ok 80 - setAuditTrail throws exception with no argument ok 81 - setAuditTrail throws exception with too many argument ok 82 - setAuditTrail accepts undef ok 83 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 84 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 85 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 89 - setSecurity returns value ok 90 - getSecurity fetches correct value ok 91 - setSecurity throws exception with bad argument ok 92 - getSecurity throws exception with argument ok 93 - setSecurity throws exception with no argument ok 94 - setSecurity throws exception with too many argument ok 95 - setSecurity accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - security->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - security->self() is a valid Bio::MAGE::Association::End ok 101 - propertySets set in new() ok 102 - setPropertySets returns correct value ok 103 - getPropertySets fetches correct value ok 104 - addPropertySets returns number of items in list ok 105 - addPropertySets adds correct value ok 106 - setPropertySets throws exception with non-array argument ok 107 - setPropertySets throws exception with bad argument array ok 108 - addPropertySets throws exception with no arguments ok 109 - addPropertySets throws exception with bad array ok 110 - setPropertySets accepts empty array ref ok 111 - getPropertySets throws exception with argument ok 112 - setPropertySets throws exception with no argument ok 113 - setPropertySets throws exception with too many argument ok 114 - setPropertySets accepts undef ok 115 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - propertySets->other() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 119 - propertySets->self() is a valid Bio::MAGE::Association::End ok 120 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 121 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 122 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 123 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Describable' ok t/ManufactureLIMSBiomaterial.t ... 1..139 ok 1 - use Bio::MAGE::Array::ManufactureLIMSBiomaterial; ok 2 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' ok 3 - package ok 4 - class_name ok 5 - bioMaterialPlateCol new ok 6 - bioMaterialPlateCol getter/setter ok 7 - bioMaterialPlateCol getter throws exception with argument ok 8 - bioMaterialPlateCol setter throws exception with no argument ok 9 - bioMaterialPlateCol setter throws exception with too many argument ok 10 - bioMaterialPlateCol setter accepts undef ok 11 - bioMaterialPlateRow new ok 12 - bioMaterialPlateRow getter/setter ok 13 - bioMaterialPlateRow getter throws exception with argument ok 14 - bioMaterialPlateRow setter throws exception with no argument ok 15 - bioMaterialPlateRow setter throws exception with too many argument ok 16 - bioMaterialPlateRow setter accepts undef ok 17 - bioMaterialPlateIdentifier new ok 18 - bioMaterialPlateIdentifier getter/setter ok 19 - bioMaterialPlateIdentifier getter throws exception with argument ok 20 - bioMaterialPlateIdentifier setter throws exception with no argument ok 21 - bioMaterialPlateIdentifier setter throws exception with too many argument ok 22 - bioMaterialPlateIdentifier setter accepts undef ok 23 - quality new ok 24 - quality getter/setter ok 25 - quality getter throws exception with argument ok 26 - quality setter throws exception with no argument ok 27 - quality setter throws exception with too many argument ok 28 - quality setter accepts undef ok 29 - An object of class 'Bio::MAGE::DesignElement::Feature' isa 'Bio::MAGE::DesignElement::Feature' ok 30 - setFeature returns value ok 31 - getFeature fetches correct value ok 32 - setFeature throws exception with bad argument ok 33 - getFeature throws exception with argument ok 34 - setFeature throws exception with no argument ok 35 - setFeature throws exception with too many argument ok 36 - setFeature accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - feature->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - feature->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setIdentifierLIMS returns value ok 44 - getIdentifierLIMS fetches correct value ok 45 - setIdentifierLIMS throws exception with bad argument ok 46 - getIdentifierLIMS throws exception with argument ok 47 - setIdentifierLIMS throws exception with no argument ok 48 - setIdentifierLIMS throws exception with too many argument ok 49 - setIdentifierLIMS accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - identifierLIMS->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - identifierLIMS->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioMaterial::BioMaterial' isa 'Bio::MAGE::BioMaterial::BioMaterial' ok 75 - setBioMaterial returns value ok 76 - getBioMaterial fetches correct value ok 77 - setBioMaterial throws exception with bad argument ok 78 - getBioMaterial throws exception with argument ok 79 - setBioMaterial throws exception with no argument ok 80 - setBioMaterial throws exception with too many argument ok 81 - setBioMaterial accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - bioMaterial->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - bioMaterial->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 88 - setSecurity returns value ok 89 - getSecurity fetches correct value ok 90 - setSecurity throws exception with bad argument ok 91 - getSecurity throws exception with argument ok 92 - setSecurity throws exception with no argument ok 93 - setSecurity throws exception with too many argument ok 94 - setSecurity accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - security->self() is a valid Bio::MAGE::Association::End ok 100 - auditTrail set in new() ok 101 - setAuditTrail returns correct value ok 102 - getAuditTrail fetches correct value ok 103 - addAuditTrail returns number of items in list ok 104 - addAuditTrail adds correct value ok 105 - setAuditTrail throws exception with non-array argument ok 106 - setAuditTrail throws exception with bad argument array ok 107 - addAuditTrail throws exception with no arguments ok 108 - addAuditTrail throws exception with bad array ok 109 - setAuditTrail accepts empty array ref ok 110 - getAuditTrail throws exception with argument ok 111 - setAuditTrail throws exception with no argument ok 112 - setAuditTrail throws exception with too many argument ok 113 - setAuditTrail accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Array::ManufactureLIMS' isa 'Bio::MAGE::Array::ManufactureLIMS' ok 139 - An object of class 'Bio::MAGE::Array::ManufactureLIMSBiomaterial' isa 'Bio::MAGE::Array::ManufactureLIMS' ok t/Map.t .......................... 1..113 ok 1 - use Bio::MAGE::BioEvent::Map; ok 2 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok 108 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 109 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioEvent::Map' ok 110 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioAssayData::BioAssayMap' ok 111 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMap' isa 'Bio::MAGE::BioEvent::Map' ok 112 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 113 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/MassUnit.t ..................... 1..46 ok 1 - use Bio::MAGE::Measurement::MassUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts kg ok 19 - unitNameCV accepts g ok 20 - unitNameCV accepts mg ok 21 - unitNameCV accepts ug ok 22 - unitNameCV accepts ng ok 23 - unitNameCV accepts pg ok 24 - unitNameCV accepts fg ok 25 - unitNameCV accepts other ok 26 - propertySets set in new() ok 27 - setPropertySets returns correct value ok 28 - getPropertySets fetches correct value ok 29 - addPropertySets returns number of items in list ok 30 - addPropertySets adds correct value ok 31 - setPropertySets throws exception with non-array argument ok 32 - setPropertySets throws exception with bad argument array ok 33 - addPropertySets throws exception with no arguments ok 34 - addPropertySets throws exception with bad array ok 35 - setPropertySets accepts empty array ref ok 36 - getPropertySets throws exception with argument ok 37 - setPropertySets throws exception with no argument ok 38 - setPropertySets throws exception with too many argument ok 39 - setPropertySets accepts undef ok 40 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->other() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 44 - propertySets->self() is a valid Bio::MAGE::Association::End ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 46 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/MeasuredBioAssay.t ............. 1..158 ok 1 - use Bio::MAGE::BioAssay::MeasuredBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::MeasuredBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - bioAssayFactorValues set in new() ok 75 - setBioAssayFactorValues returns correct value ok 76 - getBioAssayFactorValues fetches correct value ok 77 - addBioAssayFactorValues returns number of items in list ok 78 - addBioAssayFactorValues adds correct value ok 79 - setBioAssayFactorValues throws exception with non-array argument ok 80 - setBioAssayFactorValues throws exception with bad argument array ok 81 - addBioAssayFactorValues throws exception with no arguments ok 82 - addBioAssayFactorValues throws exception with bad array ok 83 - setBioAssayFactorValues accepts empty array ref ok 84 - getBioAssayFactorValues throws exception with argument ok 85 - setBioAssayFactorValues throws exception with no argument ok 86 - setBioAssayFactorValues throws exception with too many argument ok 87 - setBioAssayFactorValues accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::BioAssay::FeatureExtraction' isa 'Bio::MAGE::BioAssay::FeatureExtraction' ok 94 - setFeatureExtraction returns value ok 95 - getFeatureExtraction fetches correct value ok 96 - setFeatureExtraction throws exception with bad argument ok 97 - getFeatureExtraction throws exception with argument ok 98 - setFeatureExtraction throws exception with no argument ok 99 - setFeatureExtraction throws exception with too many argument ok 100 - setFeatureExtraction accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - featureExtraction->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - featureExtraction->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - measuredBioAssayData set in new() ok 139 - setMeasuredBioAssayData returns correct value ok 140 - getMeasuredBioAssayData fetches correct value ok 141 - addMeasuredBioAssayData returns number of items in list ok 142 - addMeasuredBioAssayData adds correct value ok 143 - setMeasuredBioAssayData throws exception with non-array argument ok 144 - setMeasuredBioAssayData throws exception with bad argument array ok 145 - addMeasuredBioAssayData throws exception with no arguments ok 146 - addMeasuredBioAssayData throws exception with bad array ok 147 - setMeasuredBioAssayData accepts empty array ref ok 148 - getMeasuredBioAssayData throws exception with argument ok 149 - setMeasuredBioAssayData throws exception with no argument ok 150 - setMeasuredBioAssayData throws exception with too many argument ok 151 - setMeasuredBioAssayData accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - measuredBioAssayData->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - measuredBioAssayData->self() is a valid Bio::MAGE::Association::End ok 157 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 158 - An object of class 'Bio::MAGE::BioAssay::MeasuredBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/MeasuredBioAssayData.t ......... 1..159 ok 1 - use Bio::MAGE::BioAssayData::MeasuredBioAssayData; ok 2 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 18 - setBioAssayDimension returns value ok 19 - getBioAssayDimension fetches correct value ok 20 - setBioAssayDimension throws exception with bad argument ok 21 - getBioAssayDimension throws exception with argument ok 22 - setBioAssayDimension throws exception with no argument ok 23 - setBioAssayDimension throws exception with too many argument ok 24 - setBioAssayDimension accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 30 - auditTrail set in new() ok 31 - setAuditTrail returns correct value ok 32 - getAuditTrail fetches correct value ok 33 - addAuditTrail returns number of items in list ok 34 - addAuditTrail adds correct value ok 35 - setAuditTrail throws exception with non-array argument ok 36 - setAuditTrail throws exception with bad argument array ok 37 - addAuditTrail throws exception with no arguments ok 38 - addAuditTrail throws exception with bad array ok 39 - setAuditTrail accepts empty array ref ok 40 - getAuditTrail throws exception with argument ok 41 - setAuditTrail throws exception with no argument ok 42 - setAuditTrail throws exception with too many argument ok 43 - setAuditTrail accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 49 - propertySets set in new() ok 50 - setPropertySets returns correct value ok 51 - getPropertySets fetches correct value ok 52 - addPropertySets returns number of items in list ok 53 - addPropertySets adds correct value ok 54 - setPropertySets throws exception with non-array argument ok 55 - setPropertySets throws exception with bad argument array ok 56 - addPropertySets throws exception with no arguments ok 57 - addPropertySets throws exception with bad array ok 58 - setPropertySets accepts empty array ref ok 59 - getPropertySets throws exception with argument ok 60 - setPropertySets throws exception with no argument ok 61 - setPropertySets throws exception with too many argument ok 62 - setPropertySets accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - propertySets->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - propertySets->self() is a valid Bio::MAGE::Association::End ok 68 - summaryStatistics set in new() ok 69 - setSummaryStatistics returns correct value ok 70 - getSummaryStatistics fetches correct value ok 71 - addSummaryStatistics returns number of items in list ok 72 - addSummaryStatistics adds correct value ok 73 - setSummaryStatistics throws exception with non-array argument ok 74 - setSummaryStatistics throws exception with bad argument array ok 75 - addSummaryStatistics throws exception with no arguments ok 76 - addSummaryStatistics throws exception with bad array ok 77 - setSummaryStatistics accepts empty array ref ok 78 - getSummaryStatistics throws exception with argument ok 79 - setSummaryStatistics throws exception with no argument ok 80 - setSummaryStatistics throws exception with too many argument ok 81 - setSummaryStatistics accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - summaryStatistics->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - summaryStatistics->self() is a valid Bio::MAGE::Association::End ok 87 - descriptions set in new() ok 88 - setDescriptions returns correct value ok 89 - getDescriptions fetches correct value ok 90 - addDescriptions returns number of items in list ok 91 - addDescriptions adds correct value ok 92 - setDescriptions throws exception with non-array argument ok 93 - setDescriptions throws exception with bad argument array ok 94 - addDescriptions throws exception with no arguments ok 95 - addDescriptions throws exception with bad array ok 96 - setDescriptions accepts empty array ref ok 97 - getDescriptions throws exception with argument ok 98 - setDescriptions throws exception with no argument ok 99 - setDescriptions throws exception with too many argument ok 100 - setDescriptions accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - descriptions->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - setDesignElementDimension returns value ok 108 - getDesignElementDimension fetches correct value ok 109 - setDesignElementDimension throws exception with bad argument ok 110 - getDesignElementDimension throws exception with argument ok 111 - setDesignElementDimension throws exception with no argument ok 112 - setDesignElementDimension throws exception with too many argument ok 113 - setDesignElementDimension accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 120 - setQuantitationTypeDimension returns value ok 121 - getQuantitationTypeDimension fetches correct value ok 122 - setQuantitationTypeDimension throws exception with bad argument ok 123 - getQuantitationTypeDimension throws exception with argument ok 124 - setQuantitationTypeDimension throws exception with no argument ok 125 - setQuantitationTypeDimension throws exception with too many argument ok 126 - setQuantitationTypeDimension accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - quantitationTypeDimension->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - quantitationTypeDimension->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 133 - setSecurity returns value ok 134 - getSecurity fetches correct value ok 135 - setSecurity throws exception with bad argument ok 136 - getSecurity throws exception with argument ok 137 - setSecurity throws exception with no argument ok 138 - setSecurity throws exception with too many argument ok 139 - setSecurity accepts undef ok 140 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 141 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 142 - security->other() is a valid Bio::MAGE::Association::End ok 143 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 144 - security->self() is a valid Bio::MAGE::Association::End ok 145 - An object of class 'Bio::MAGE::BioAssayData::BioDataValues' isa 'Bio::MAGE::BioAssayData::BioDataValues' ok 146 - setBioDataValues returns value ok 147 - getBioDataValues fetches correct value ok 148 - setBioDataValues throws exception with bad argument ok 149 - getBioDataValues throws exception with argument ok 150 - setBioDataValues throws exception with no argument ok 151 - setBioDataValues throws exception with too many argument ok 152 - setBioDataValues accepts undef ok 153 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - bioDataValues->other() is a valid Bio::MAGE::Association::End ok 156 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 157 - bioDataValues->self() is a valid Bio::MAGE::Association::End ok 158 - An object of class 'Bio::MAGE::BioAssayData::BioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok 159 - An object of class 'Bio::MAGE::BioAssayData::MeasuredBioAssayData' isa 'Bio::MAGE::BioAssayData::BioAssayData' ok t/MeasuredSignal.t ............... 1..171 ok 1 - use Bio::MAGE::QuantitationType::MeasuredSignal; ok 2 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Measurement.t .................. 1..74 ok 1 - use Bio::MAGE::Measurement::Measurement; ok 2 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - otherKind new ok 12 - otherKind getter/setter ok 13 - otherKind getter throws exception with argument ok 14 - otherKind setter throws exception with no argument ok 15 - otherKind setter throws exception with too many argument ok 16 - otherKind setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - type setter throws exception with bad argument ok 24 - type accepts absolute ok 25 - type accepts change ok 26 - kindCV new ok 27 - kindCV getter/setter ok 28 - kindCV getter throws exception with argument ok 29 - kindCV setter throws exception with no argument ok 30 - kindCV setter throws exception with too many argument ok 31 - kindCV setter accepts undef ok 32 - kindCV setter throws exception with bad argument ok 33 - kindCV accepts time ok 34 - kindCV accepts distance ok 35 - kindCV accepts temperature ok 36 - kindCV accepts quantity ok 37 - kindCV accepts mass ok 38 - kindCV accepts volume ok 39 - kindCV accepts concentration ok 40 - kindCV accepts other ok 41 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - setUnit returns value ok 43 - getUnit fetches correct value ok 44 - setUnit throws exception with bad argument ok 45 - getUnit throws exception with argument ok 46 - setUnit throws exception with no argument ok 47 - setUnit throws exception with too many argument ok 48 - setUnit accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - unit->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - unit->self() is a valid Bio::MAGE::Association::End ok 54 - propertySets set in new() ok 55 - setPropertySets returns correct value ok 56 - getPropertySets fetches correct value ok 57 - addPropertySets returns number of items in list ok 58 - addPropertySets adds correct value ok 59 - setPropertySets throws exception with non-array argument ok 60 - setPropertySets throws exception with bad argument array ok 61 - addPropertySets throws exception with no arguments ok 62 - addPropertySets throws exception with bad array ok 63 - setPropertySets accepts empty array ref ok 64 - getPropertySets throws exception with argument ok 65 - setPropertySets throws exception with no argument ok 66 - setPropertySets throws exception with too many argument ok 67 - setPropertySets accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - propertySets->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->self() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 74 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Extendable' ok t/Measurement_package.t .......... 1..14 ok 1 - use Bio::MAGE::Measurement; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 4 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 5 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 6 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 7 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 8 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 9 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 10 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 11 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 12 - An object of class 'Bio::MAGE::Measurement' isa 'Bio::MAGE::Measurement' ok 13 - tagname ok 14 - xml_lists ok t/MismatchInformation.t .......... 1..43 ok 1 - use Bio::MAGE::DesignElement::MismatchInformation; ok 2 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::DesignElement::MismatchInformation' ok 3 - package ok 4 - class_name ok 5 - replacedLength new ok 6 - replacedLength getter/setter ok 7 - replacedLength getter throws exception with argument ok 8 - replacedLength setter throws exception with no argument ok 9 - replacedLength setter throws exception with too many argument ok 10 - replacedLength setter accepts undef ok 11 - startCoord new ok 12 - startCoord getter/setter ok 13 - startCoord getter throws exception with argument ok 14 - startCoord setter throws exception with no argument ok 15 - startCoord setter throws exception with too many argument ok 16 - startCoord setter accepts undef ok 17 - newSequence new ok 18 - newSequence getter/setter ok 19 - newSequence getter throws exception with argument ok 20 - newSequence setter throws exception with no argument ok 21 - newSequence setter throws exception with too many argument ok 22 - newSequence setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 43 - An object of class 'Bio::MAGE::DesignElement::MismatchInformation' isa 'Bio::MAGE::Extendable' ok t/NameValueType.t ................ 1..41 ok 1 - use Bio::MAGE::NameValueType; ok 2 - An object of class 'Bio::MAGE::NameValueType' isa 'Bio::MAGE::NameValueType' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - type new ok 18 - type getter/setter ok 19 - type getter throws exception with argument ok 20 - type setter throws exception with no argument ok 21 - type setter throws exception with too many argument ok 22 - type setter accepts undef ok 23 - propertySets set in new() ok 24 - setPropertySets returns correct value ok 25 - getPropertySets fetches correct value ok 26 - addPropertySets returns number of items in list ok 27 - addPropertySets adds correct value ok 28 - setPropertySets throws exception with non-array argument ok 29 - setPropertySets throws exception with bad argument array ok 30 - addPropertySets throws exception with no arguments ok 31 - addPropertySets throws exception with bad array ok 32 - setPropertySets accepts empty array ref ok 33 - getPropertySets throws exception with argument ok 34 - setPropertySets throws exception with no argument ok 35 - setPropertySets throws exception with too many argument ok 36 - setPropertySets accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - propertySets->self() is a valid Bio::MAGE::Association::End ok t/Node.t ......................... 1..133 ok 1 - use Bio::MAGE::HigherLevelAnalysis::Node; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::HigherLevelAnalysis::Node' ok 3 - package ok 4 - class_name ok 5 - nodeValue set in new() ok 6 - setNodeValue returns correct value ok 7 - getNodeValue fetches correct value ok 8 - addNodeValue returns number of items in list ok 9 - addNodeValue adds correct value ok 10 - setNodeValue throws exception with non-array argument ok 11 - setNodeValue throws exception with bad argument array ok 12 - addNodeValue throws exception with no arguments ok 13 - addNodeValue throws exception with bad array ok 14 - setNodeValue accepts empty array ref ok 15 - getNodeValue throws exception with argument ok 16 - setNodeValue throws exception with no argument ok 17 - setNodeValue throws exception with too many argument ok 18 - setNodeValue accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - nodeValue->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - nodeValue->self() is a valid Bio::MAGE::Association::End ok 24 - descriptions set in new() ok 25 - setDescriptions returns correct value ok 26 - getDescriptions fetches correct value ok 27 - addDescriptions returns number of items in list ok 28 - addDescriptions adds correct value ok 29 - setDescriptions throws exception with non-array argument ok 30 - setDescriptions throws exception with bad argument array ok 31 - addDescriptions throws exception with no arguments ok 32 - addDescriptions throws exception with bad array ok 33 - setDescriptions accepts empty array ref ok 34 - getDescriptions throws exception with argument ok 35 - setDescriptions throws exception with no argument ok 36 - setDescriptions throws exception with too many argument ok 37 - setDescriptions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - descriptions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - descriptions->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 63 - setSecurity returns value ok 64 - getSecurity fetches correct value ok 65 - setSecurity throws exception with bad argument ok 66 - getSecurity throws exception with argument ok 67 - setSecurity throws exception with no argument ok 68 - setSecurity throws exception with too many argument ok 69 - setSecurity accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - security->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - security->self() is a valid Bio::MAGE::Association::End ok 75 - nodes set in new() ok 76 - setNodes returns correct value ok 77 - getNodes fetches correct value ok 78 - addNodes returns number of items in list ok 79 - addNodes adds correct value ok 80 - setNodes throws exception with non-array argument ok 81 - setNodes throws exception with bad argument array ok 82 - addNodes throws exception with no arguments ok 83 - addNodes throws exception with bad array ok 84 - setNodes accepts empty array ref ok 85 - getNodes throws exception with argument ok 86 - setNodes throws exception with no argument ok 87 - setNodes throws exception with too many argument ok 88 - setNodes accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - nodes->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - nodes->self() is a valid Bio::MAGE::Association::End ok 94 - nodeContents set in new() ok 95 - setNodeContents returns correct value ok 96 - getNodeContents fetches correct value ok 97 - addNodeContents returns number of items in list ok 98 - addNodeContents adds correct value ok 99 - setNodeContents throws exception with non-array argument ok 100 - setNodeContents throws exception with bad argument array ok 101 - addNodeContents throws exception with no arguments ok 102 - addNodeContents throws exception with bad array ok 103 - setNodeContents accepts empty array ref ok 104 - getNodeContents throws exception with argument ok 105 - setNodeContents throws exception with no argument ok 106 - setNodeContents throws exception with too many argument ok 107 - setNodeContents accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - nodeContents->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - nodeContents->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 133 - An object of class 'Bio::MAGE::HigherLevelAnalysis::Node' isa 'Bio::MAGE::Describable' ok t/NodeContents.t ................. 1..115 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeContents; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::HigherLevelAnalysis::NodeContents' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 6 - setDesignElementDimension returns value ok 7 - getDesignElementDimension fetches correct value ok 8 - setDesignElementDimension throws exception with bad argument ok 9 - getDesignElementDimension throws exception with argument ok 10 - setDesignElementDimension throws exception with no argument ok 11 - setDesignElementDimension throws exception with too many argument ok 12 - setDesignElementDimension accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - designElementDimension->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - designElementDimension->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::BioAssayData::BioAssayDimension' isa 'Bio::MAGE::BioAssayData::BioAssayDimension' ok 19 - setBioAssayDimension returns value ok 20 - getBioAssayDimension fetches correct value ok 21 - setBioAssayDimension throws exception with bad argument ok 22 - getBioAssayDimension throws exception with argument ok 23 - setBioAssayDimension throws exception with no argument ok 24 - setBioAssayDimension throws exception with too many argument ok 25 - setBioAssayDimension accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - bioAssayDimension->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - bioAssayDimension->self() is a valid Bio::MAGE::Association::End ok 31 - descriptions set in new() ok 32 - setDescriptions returns correct value ok 33 - getDescriptions fetches correct value ok 34 - addDescriptions returns number of items in list ok 35 - addDescriptions adds correct value ok 36 - setDescriptions throws exception with non-array argument ok 37 - setDescriptions throws exception with bad argument array ok 38 - addDescriptions throws exception with no arguments ok 39 - addDescriptions throws exception with bad array ok 40 - setDescriptions accepts empty array ref ok 41 - getDescriptions throws exception with argument ok 42 - setDescriptions throws exception with no argument ok 43 - setDescriptions throws exception with too many argument ok 44 - setDescriptions accepts undef ok 45 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - descriptions->other() is a valid Bio::MAGE::Association::End ok 48 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 49 - descriptions->self() is a valid Bio::MAGE::Association::End ok 50 - auditTrail set in new() ok 51 - setAuditTrail returns correct value ok 52 - getAuditTrail fetches correct value ok 53 - addAuditTrail returns number of items in list ok 54 - addAuditTrail adds correct value ok 55 - setAuditTrail throws exception with non-array argument ok 56 - setAuditTrail throws exception with bad argument array ok 57 - addAuditTrail throws exception with no arguments ok 58 - addAuditTrail throws exception with bad array ok 59 - setAuditTrail accepts empty array ref ok 60 - getAuditTrail throws exception with argument ok 61 - setAuditTrail throws exception with no argument ok 62 - setAuditTrail throws exception with too many argument ok 63 - setAuditTrail accepts undef ok 64 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 68 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 69 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 70 - setSecurity returns value ok 71 - getSecurity fetches correct value ok 72 - setSecurity throws exception with bad argument ok 73 - getSecurity throws exception with argument ok 74 - setSecurity throws exception with no argument ok 75 - setSecurity throws exception with too many argument ok 76 - setSecurity accepts undef ok 77 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - security->other() is a valid Bio::MAGE::Association::End ok 80 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 81 - security->self() is a valid Bio::MAGE::Association::End ok 82 - propertySets set in new() ok 83 - setPropertySets returns correct value ok 84 - getPropertySets fetches correct value ok 85 - addPropertySets returns number of items in list ok 86 - addPropertySets adds correct value ok 87 - setPropertySets throws exception with non-array argument ok 88 - setPropertySets throws exception with bad argument array ok 89 - addPropertySets throws exception with no arguments ok 90 - addPropertySets throws exception with bad array ok 91 - setPropertySets accepts empty array ref ok 92 - getPropertySets throws exception with argument ok 93 - setPropertySets throws exception with no argument ok 94 - setPropertySets throws exception with too many argument ok 95 - setPropertySets accepts undef ok 96 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->other() is a valid Bio::MAGE::Association::End ok 99 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 100 - propertySets->self() is a valid Bio::MAGE::Association::End ok 101 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 102 - setQuantitationDimension returns value ok 103 - getQuantitationDimension fetches correct value ok 104 - setQuantitationDimension throws exception with bad argument ok 105 - getQuantitationDimension throws exception with argument ok 106 - setQuantitationDimension throws exception with no argument ok 107 - setQuantitationDimension throws exception with too many argument ok 108 - setQuantitationDimension accepts undef ok 109 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - quantitationDimension->other() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 113 - quantitationDimension->self() is a valid Bio::MAGE::Association::End ok 114 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 115 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeContents' isa 'Bio::MAGE::Describable' ok t/NodeValue.t .................... 1..76 ok 1 - use Bio::MAGE::HigherLevelAnalysis::NodeValue; ok 2 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::HigherLevelAnalysis::NodeValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setScale returns value ok 32 - getScale fetches correct value ok 33 - setScale throws exception with bad argument ok 34 - getScale throws exception with argument ok 35 - setScale throws exception with no argument ok 36 - setScale throws exception with too many argument ok 37 - setScale accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - scale->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - scale->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 44 - setType returns value ok 45 - getType fetches correct value ok 46 - setType throws exception with bad argument ok 47 - getType throws exception with argument ok 48 - setType throws exception with no argument ok 49 - setType throws exception with too many argument ok 50 - setType accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - type->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - type->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 76 - An object of class 'Bio::MAGE::HigherLevelAnalysis::NodeValue' isa 'Bio::MAGE::Extendable' ok t/OntologyEntry.t ................ 1..75 ok 1 - use Bio::MAGE::Description::OntologyEntry; ok 2 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - category new ok 12 - category getter/setter ok 13 - category getter throws exception with argument ok 14 - category setter throws exception with no argument ok 15 - category setter throws exception with too many argument ok 16 - category setter accepts undef ok 17 - description new ok 18 - description getter/setter ok 19 - description getter throws exception with argument ok 20 - description setter throws exception with no argument ok 21 - description setter throws exception with too many argument ok 22 - description setter accepts undef ok 23 - associations set in new() ok 24 - setAssociations returns correct value ok 25 - getAssociations fetches correct value ok 26 - addAssociations returns number of items in list ok 27 - addAssociations adds correct value ok 28 - setAssociations throws exception with non-array argument ok 29 - setAssociations throws exception with bad argument array ok 30 - addAssociations throws exception with no arguments ok 31 - addAssociations throws exception with bad array ok 32 - setAssociations accepts empty array ref ok 33 - getAssociations throws exception with argument ok 34 - setAssociations throws exception with no argument ok 35 - setAssociations throws exception with too many argument ok 36 - setAssociations accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - associations->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - associations->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::DatabaseEntry' isa 'Bio::MAGE::Description::DatabaseEntry' ok 43 - setOntologyReference returns value ok 44 - getOntologyReference fetches correct value ok 45 - setOntologyReference throws exception with bad argument ok 46 - getOntologyReference throws exception with argument ok 47 - setOntologyReference throws exception with no argument ok 48 - setOntologyReference throws exception with too many argument ok 49 - setOntologyReference accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - ontologyReference->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - ontologyReference->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 75 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Extendable' ok t/Organization.t ................. 1..156 ok 1 - use Bio::MAGE::AuditAndSecurity::Organization; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 3 - package ok 4 - class_name ok 5 - email new ok 6 - email getter/setter ok 7 - email getter throws exception with argument ok 8 - email setter throws exception with no argument ok 9 - email setter throws exception with too many argument ok 10 - email setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - URI new ok 18 - URI getter/setter ok 19 - URI getter throws exception with argument ok 20 - URI setter throws exception with no argument ok 21 - URI setter throws exception with too many argument ok 22 - URI setter accepts undef ok 23 - fax new ok 24 - fax getter/setter ok 25 - fax getter throws exception with argument ok 26 - fax setter throws exception with no argument ok 27 - fax setter throws exception with too many argument ok 28 - fax setter accepts undef ok 29 - tollFreePhone new ok 30 - tollFreePhone getter/setter ok 31 - tollFreePhone getter throws exception with argument ok 32 - tollFreePhone setter throws exception with no argument ok 33 - tollFreePhone setter throws exception with too many argument ok 34 - tollFreePhone setter accepts undef ok 35 - name new ok 36 - name getter/setter ok 37 - name getter throws exception with argument ok 38 - name setter throws exception with no argument ok 39 - name setter throws exception with too many argument ok 40 - name setter accepts undef ok 41 - address new ok 42 - address getter/setter ok 43 - address getter throws exception with argument ok 44 - address setter throws exception with no argument ok 45 - address setter throws exception with too many argument ok 46 - address setter accepts undef ok 47 - phone new ok 48 - phone getter/setter ok 49 - phone getter throws exception with argument ok 50 - phone setter throws exception with no argument ok 51 - phone setter throws exception with too many argument ok 52 - phone setter accepts undef ok 53 - roles set in new() ok 54 - setRoles returns correct value ok 55 - getRoles fetches correct value ok 56 - addRoles returns number of items in list ok 57 - addRoles adds correct value ok 58 - setRoles throws exception with non-array argument ok 59 - setRoles throws exception with bad argument array ok 60 - addRoles throws exception with no arguments ok 61 - addRoles throws exception with bad array ok 62 - setRoles accepts empty array ref ok 63 - getRoles throws exception with argument ok 64 - setRoles throws exception with no argument ok 65 - setRoles throws exception with too many argument ok 66 - setRoles accepts undef ok 67 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 68 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 69 - roles->other() is a valid Bio::MAGE::Association::End ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - roles->self() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 73 - setParent returns value ok 74 - getParent fetches correct value ok 75 - setParent throws exception with bad argument ok 76 - getParent throws exception with argument ok 77 - setParent throws exception with no argument ok 78 - setParent throws exception with too many argument ok 79 - setParent accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - parent->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - parent->self() is a valid Bio::MAGE::Association::End ok 85 - descriptions set in new() ok 86 - setDescriptions returns correct value ok 87 - getDescriptions fetches correct value ok 88 - addDescriptions returns number of items in list ok 89 - addDescriptions adds correct value ok 90 - setDescriptions throws exception with non-array argument ok 91 - setDescriptions throws exception with bad argument array ok 92 - addDescriptions throws exception with no arguments ok 93 - addDescriptions throws exception with bad array ok 94 - setDescriptions accepts empty array ref ok 95 - getDescriptions throws exception with argument ok 96 - setDescriptions throws exception with no argument ok 97 - setDescriptions throws exception with too many argument ok 98 - setDescriptions accepts undef ok 99 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 100 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 101 - descriptions->other() is a valid Bio::MAGE::Association::End ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - descriptions->self() is a valid Bio::MAGE::Association::End ok 104 - auditTrail set in new() ok 105 - setAuditTrail returns correct value ok 106 - getAuditTrail fetches correct value ok 107 - addAuditTrail returns number of items in list ok 108 - addAuditTrail adds correct value ok 109 - setAuditTrail throws exception with non-array argument ok 110 - setAuditTrail throws exception with bad argument array ok 111 - addAuditTrail throws exception with no arguments ok 112 - addAuditTrail throws exception with bad array ok 113 - setAuditTrail accepts empty array ref ok 114 - getAuditTrail throws exception with argument ok 115 - setAuditTrail throws exception with no argument ok 116 - setAuditTrail throws exception with too many argument ok 117 - setAuditTrail accepts undef ok 118 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 119 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 120 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 124 - setSecurity returns value ok 125 - getSecurity fetches correct value ok 126 - setSecurity throws exception with bad argument ok 127 - getSecurity throws exception with argument ok 128 - setSecurity throws exception with no argument ok 129 - setSecurity throws exception with too many argument ok 130 - setSecurity accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - security->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->self() is a valid Bio::MAGE::Association::End ok 136 - propertySets set in new() ok 137 - setPropertySets returns correct value ok 138 - getPropertySets fetches correct value ok 139 - addPropertySets returns number of items in list ok 140 - addPropertySets adds correct value ok 141 - setPropertySets throws exception with non-array argument ok 142 - setPropertySets throws exception with bad argument array ok 143 - addPropertySets throws exception with no arguments ok 144 - addPropertySets throws exception with bad array ok 145 - setPropertySets accepts empty array ref ok 146 - getPropertySets throws exception with argument ok 147 - setPropertySets throws exception with no argument ok 148 - setPropertySets throws exception with too many argument ok 149 - setPropertySets accepts undef ok 150 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 151 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 152 - propertySets->other() is a valid Bio::MAGE::Association::End ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - propertySets->self() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 156 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/Parameter.t .................... 1..114 ok 1 - use Bio::MAGE::Protocol::Parameter; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setDataType returns value ok 19 - getDataType fetches correct value ok 20 - setDataType throws exception with bad argument ok 21 - getDataType throws exception with argument ok 22 - setDataType throws exception with no argument ok 23 - setDataType throws exception with too many argument ok 24 - setDataType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - dataType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - dataType->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 101 - setDefaultValue returns value ok 102 - getDefaultValue fetches correct value ok 103 - setDefaultValue throws exception with bad argument ok 104 - getDefaultValue throws exception with argument ok 105 - setDefaultValue throws exception with no argument ok 106 - setDefaultValue throws exception with too many argument ok 107 - setDefaultValue accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - defaultValue->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - defaultValue->self() is a valid Bio::MAGE::Association::End ok 113 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 114 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Identifiable' ok t/Parameterizable.t .............. 1..119 ok 1 - use Bio::MAGE::Protocol::Parameterizable; ok 2 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 3 - package ok 4 - class_name ok 5 - URI new ok 6 - URI getter/setter ok 7 - URI getter throws exception with argument ok 8 - URI setter throws exception with no argument ok 9 - URI setter throws exception with too many argument ok 10 - URI setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - parameterTypes set in new() ok 24 - setParameterTypes returns correct value ok 25 - getParameterTypes fetches correct value ok 26 - addParameterTypes returns number of items in list ok 27 - addParameterTypes adds correct value ok 28 - setParameterTypes throws exception with non-array argument ok 29 - setParameterTypes throws exception with bad argument array ok 30 - addParameterTypes throws exception with no arguments ok 31 - addParameterTypes throws exception with bad array ok 32 - setParameterTypes accepts empty array ref ok 33 - getParameterTypes throws exception with argument ok 34 - setParameterTypes throws exception with no argument ok 35 - setParameterTypes throws exception with too many argument ok 36 - setParameterTypes accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 42 - descriptions set in new() ok 43 - setDescriptions returns correct value ok 44 - getDescriptions fetches correct value ok 45 - addDescriptions returns number of items in list ok 46 - addDescriptions adds correct value ok 47 - setDescriptions throws exception with non-array argument ok 48 - setDescriptions throws exception with bad argument array ok 49 - addDescriptions throws exception with no arguments ok 50 - addDescriptions throws exception with bad array ok 51 - setDescriptions accepts empty array ref ok 52 - getDescriptions throws exception with argument ok 53 - setDescriptions throws exception with no argument ok 54 - setDescriptions throws exception with too many argument ok 55 - setDescriptions accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - descriptions->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - descriptions->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 62 - setSecurity returns value ok 63 - getSecurity fetches correct value ok 64 - setSecurity throws exception with bad argument ok 65 - getSecurity throws exception with argument ok 66 - setSecurity throws exception with no argument ok 67 - setSecurity throws exception with too many argument ok 68 - setSecurity accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - security->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - security->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - propertySets set in new() ok 94 - setPropertySets returns correct value ok 95 - getPropertySets fetches correct value ok 96 - addPropertySets returns number of items in list ok 97 - addPropertySets adds correct value ok 98 - setPropertySets throws exception with non-array argument ok 99 - setPropertySets throws exception with bad argument array ok 100 - addPropertySets throws exception with no arguments ok 101 - addPropertySets throws exception with bad array ok 102 - setPropertySets accepts empty array ref ok 103 - getPropertySets throws exception with argument ok 104 - setPropertySets throws exception with no argument ok 105 - setPropertySets throws exception with too many argument ok 106 - setPropertySets accepts undef ok 107 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 108 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 109 - propertySets->other() is a valid Bio::MAGE::Association::End ok 110 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 111 - propertySets->self() is a valid Bio::MAGE::Association::End ok 112 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 113 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok 114 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 115 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok 116 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 117 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Parameterizable' ok 118 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 119 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Identifiable' ok t/ParameterizableApplication.t ... 1..101 ok 1 - use Bio::MAGE::Protocol::ParameterizableApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 3 - package ok 4 - class_name ok 5 - descriptions set in new() ok 6 - setDescriptions returns correct value ok 7 - getDescriptions fetches correct value ok 8 - addDescriptions returns number of items in list ok 9 - addDescriptions adds correct value ok 10 - setDescriptions throws exception with non-array argument ok 11 - setDescriptions throws exception with bad argument array ok 12 - addDescriptions throws exception with no arguments ok 13 - addDescriptions throws exception with bad array ok 14 - setDescriptions accepts empty array ref ok 15 - getDescriptions throws exception with argument ok 16 - setDescriptions throws exception with no argument ok 17 - setDescriptions throws exception with too many argument ok 18 - setDescriptions accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - descriptions->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - descriptions->self() is a valid Bio::MAGE::Association::End ok 24 - auditTrail set in new() ok 25 - setAuditTrail returns correct value ok 26 - getAuditTrail fetches correct value ok 27 - addAuditTrail returns number of items in list ok 28 - addAuditTrail adds correct value ok 29 - setAuditTrail throws exception with non-array argument ok 30 - setAuditTrail throws exception with bad argument array ok 31 - addAuditTrail throws exception with no arguments ok 32 - addAuditTrail throws exception with bad array ok 33 - setAuditTrail accepts empty array ref ok 34 - getAuditTrail throws exception with argument ok 35 - setAuditTrail throws exception with no argument ok 36 - setAuditTrail throws exception with too many argument ok 37 - setAuditTrail accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 44 - setSecurity returns value ok 45 - getSecurity fetches correct value ok 46 - setSecurity throws exception with bad argument ok 47 - getSecurity throws exception with argument ok 48 - setSecurity throws exception with no argument ok 49 - setSecurity throws exception with too many argument ok 50 - setSecurity accepts undef ok 51 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - security->other() is a valid Bio::MAGE::Association::End ok 54 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 55 - security->self() is a valid Bio::MAGE::Association::End ok 56 - propertySets set in new() ok 57 - setPropertySets returns correct value ok 58 - getPropertySets fetches correct value ok 59 - addPropertySets returns number of items in list ok 60 - addPropertySets adds correct value ok 61 - setPropertySets throws exception with non-array argument ok 62 - setPropertySets throws exception with bad argument array ok 63 - addPropertySets throws exception with no arguments ok 64 - addPropertySets throws exception with bad array ok 65 - setPropertySets accepts empty array ref ok 66 - getPropertySets throws exception with argument ok 67 - setPropertySets throws exception with no argument ok 68 - setPropertySets throws exception with too many argument ok 69 - setPropertySets accepts undef ok 70 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - propertySets->other() is a valid Bio::MAGE::Association::End ok 73 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 74 - propertySets->self() is a valid Bio::MAGE::Association::End ok 75 - parameterValues set in new() ok 76 - setParameterValues returns correct value ok 77 - getParameterValues fetches correct value ok 78 - addParameterValues returns number of items in list ok 79 - addParameterValues adds correct value ok 80 - setParameterValues throws exception with non-array argument ok 81 - setParameterValues throws exception with bad argument array ok 82 - addParameterValues throws exception with no arguments ok 83 - addParameterValues throws exception with bad array ok 84 - setParameterValues accepts empty array ref ok 85 - getParameterValues throws exception with argument ok 86 - setParameterValues throws exception with no argument ok 87 - setParameterValues throws exception with too many argument ok 88 - setParameterValues accepts undef ok 89 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 92 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 93 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 94 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 95 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 96 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 97 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 98 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 99 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 100 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 101 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Describable' ok t/ParameterValue.t ............... 1..44 ok 1 - use Bio::MAGE::Protocol::ParameterValue; ok 2 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 3 - package ok 4 - class_name ok 5 - value new ok 6 - value getter/setter ok 7 - value getter throws exception with argument ok 8 - value setter throws exception with no argument ok 9 - value setter throws exception with too many argument ok 10 - value setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 12 - setParameterType returns value ok 13 - getParameterType fetches correct value ok 14 - setParameterType throws exception with bad argument ok 15 - getParameterType throws exception with argument ok 16 - setParameterType throws exception with no argument ok 17 - setParameterType throws exception with too many argument ok 18 - setParameterType accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - parameterType->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - parameterType->self() is a valid Bio::MAGE::Association::End ok 24 - propertySets set in new() ok 25 - setPropertySets returns correct value ok 26 - getPropertySets fetches correct value ok 27 - addPropertySets returns number of items in list ok 28 - addPropertySets adds correct value ok 29 - setPropertySets throws exception with non-array argument ok 30 - setPropertySets throws exception with bad argument array ok 31 - addPropertySets throws exception with no arguments ok 32 - addPropertySets throws exception with bad array ok 33 - setPropertySets accepts empty array ref ok 34 - getPropertySets throws exception with argument ok 35 - setPropertySets throws exception with no argument ok 36 - setPropertySets throws exception with too many argument ok 37 - setPropertySets accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - propertySets->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - propertySets->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Extendable' ok t/Person.t ....................... 1..174 ok 1 - use Bio::MAGE::AuditAndSecurity::Person; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Person' ok 3 - package ok 4 - class_name ok 5 - firstName new ok 6 - firstName getter/setter ok 7 - firstName getter throws exception with argument ok 8 - firstName setter throws exception with no argument ok 9 - firstName setter throws exception with too many argument ok 10 - firstName setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - midInitials new ok 24 - midInitials getter/setter ok 25 - midInitials getter throws exception with argument ok 26 - midInitials setter throws exception with no argument ok 27 - midInitials setter throws exception with too many argument ok 28 - midInitials setter accepts undef ok 29 - phone new ok 30 - phone getter/setter ok 31 - phone getter throws exception with argument ok 32 - phone setter throws exception with no argument ok 33 - phone setter throws exception with too many argument ok 34 - phone setter accepts undef ok 35 - email new ok 36 - email getter/setter ok 37 - email getter throws exception with argument ok 38 - email setter throws exception with no argument ok 39 - email setter throws exception with too many argument ok 40 - email setter accepts undef ok 41 - identifier new ok 42 - identifier getter/setter ok 43 - identifier getter throws exception with argument ok 44 - identifier setter throws exception with no argument ok 45 - identifier setter throws exception with too many argument ok 46 - identifier setter accepts undef ok 47 - tollFreePhone new ok 48 - tollFreePhone getter/setter ok 49 - tollFreePhone getter throws exception with argument ok 50 - tollFreePhone setter throws exception with no argument ok 51 - tollFreePhone setter throws exception with too many argument ok 52 - tollFreePhone setter accepts undef ok 53 - fax new ok 54 - fax getter/setter ok 55 - fax getter throws exception with argument ok 56 - fax setter throws exception with no argument ok 57 - fax setter throws exception with too many argument ok 58 - fax setter accepts undef ok 59 - lastName new ok 60 - lastName getter/setter ok 61 - lastName getter throws exception with argument ok 62 - lastName setter throws exception with no argument ok 63 - lastName setter throws exception with too many argument ok 64 - lastName setter accepts undef ok 65 - address new ok 66 - address getter/setter ok 67 - address getter throws exception with argument ok 68 - address setter throws exception with no argument ok 69 - address setter throws exception with too many argument ok 70 - address setter accepts undef ok 71 - roles set in new() ok 72 - setRoles returns correct value ok 73 - getRoles fetches correct value ok 74 - addRoles returns number of items in list ok 75 - addRoles adds correct value ok 76 - setRoles throws exception with non-array argument ok 77 - setRoles throws exception with bad argument array ok 78 - addRoles throws exception with no arguments ok 79 - addRoles throws exception with bad array ok 80 - setRoles accepts empty array ref ok 81 - getRoles throws exception with argument ok 82 - setRoles throws exception with no argument ok 83 - setRoles throws exception with too many argument ok 84 - setRoles accepts undef ok 85 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 86 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 87 - roles->other() is a valid Bio::MAGE::Association::End ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - roles->self() is a valid Bio::MAGE::Association::End ok 90 - descriptions set in new() ok 91 - setDescriptions returns correct value ok 92 - getDescriptions fetches correct value ok 93 - addDescriptions returns number of items in list ok 94 - addDescriptions adds correct value ok 95 - setDescriptions throws exception with non-array argument ok 96 - setDescriptions throws exception with bad argument array ok 97 - addDescriptions throws exception with no arguments ok 98 - addDescriptions throws exception with bad array ok 99 - setDescriptions accepts empty array ref ok 100 - getDescriptions throws exception with argument ok 101 - setDescriptions throws exception with no argument ok 102 - setDescriptions throws exception with too many argument ok 103 - setDescriptions accepts undef ok 104 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 105 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 106 - descriptions->other() is a valid Bio::MAGE::Association::End ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - descriptions->self() is a valid Bio::MAGE::Association::End ok 109 - auditTrail set in new() ok 110 - setAuditTrail returns correct value ok 111 - getAuditTrail fetches correct value ok 112 - addAuditTrail returns number of items in list ok 113 - addAuditTrail adds correct value ok 114 - setAuditTrail throws exception with non-array argument ok 115 - setAuditTrail throws exception with bad argument array ok 116 - addAuditTrail throws exception with no arguments ok 117 - addAuditTrail throws exception with bad array ok 118 - setAuditTrail accepts empty array ref ok 119 - getAuditTrail throws exception with argument ok 120 - setAuditTrail throws exception with no argument ok 121 - setAuditTrail throws exception with too many argument ok 122 - setAuditTrail accepts undef ok 123 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 124 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 125 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 129 - setSecurity returns value ok 130 - getSecurity fetches correct value ok 131 - setSecurity throws exception with bad argument ok 132 - getSecurity throws exception with argument ok 133 - setSecurity throws exception with no argument ok 134 - setSecurity throws exception with too many argument ok 135 - setSecurity accepts undef ok 136 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 137 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 138 - security->other() is a valid Bio::MAGE::Association::End ok 139 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 140 - security->self() is a valid Bio::MAGE::Association::End ok 141 - An object of class 'Bio::MAGE::AuditAndSecurity::Organization' isa 'Bio::MAGE::AuditAndSecurity::Organization' ok 142 - setAffiliation returns value ok 143 - getAffiliation fetches correct value ok 144 - setAffiliation throws exception with bad argument ok 145 - getAffiliation throws exception with argument ok 146 - setAffiliation throws exception with no argument ok 147 - setAffiliation throws exception with too many argument ok 148 - setAffiliation accepts undef ok 149 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 150 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 151 - affiliation->other() is a valid Bio::MAGE::Association::End ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - affiliation->self() is a valid Bio::MAGE::Association::End ok 154 - propertySets set in new() ok 155 - setPropertySets returns correct value ok 156 - getPropertySets fetches correct value ok 157 - addPropertySets returns number of items in list ok 158 - addPropertySets adds correct value ok 159 - setPropertySets throws exception with non-array argument ok 160 - setPropertySets throws exception with bad argument array ok 161 - addPropertySets throws exception with no arguments ok 162 - addPropertySets throws exception with bad array ok 163 - setPropertySets accepts empty array ref ok 164 - getPropertySets throws exception with argument ok 165 - setPropertySets throws exception with no argument ok 166 - setPropertySets throws exception with too many argument ok 167 - setPropertySets accepts undef ok 168 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 169 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 170 - propertySets->other() is a valid Bio::MAGE::Association::End ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - propertySets->self() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::AuditAndSecurity::Contact' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok 174 - An object of class 'Bio::MAGE::AuditAndSecurity::Person' isa 'Bio::MAGE::AuditAndSecurity::Contact' ok t/PhysicalArrayDesign.t .......... 1..227 ok 1 - use Bio::MAGE::ArrayDesign::PhysicalArrayDesign; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - numberOfFeatures new ok 12 - numberOfFeatures getter/setter ok 13 - numberOfFeatures getter throws exception with argument ok 14 - numberOfFeatures setter throws exception with no argument ok 15 - numberOfFeatures setter throws exception with too many argument ok 16 - numberOfFeatures setter accepts undef ok 17 - version new ok 18 - version getter/setter ok 19 - version getter throws exception with argument ok 20 - version setter throws exception with no argument ok 21 - version setter throws exception with too many argument ok 22 - version setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - auditTrail set in new() ok 30 - setAuditTrail returns correct value ok 31 - getAuditTrail fetches correct value ok 32 - addAuditTrail returns number of items in list ok 33 - addAuditTrail adds correct value ok 34 - setAuditTrail throws exception with non-array argument ok 35 - setAuditTrail throws exception with bad argument array ok 36 - addAuditTrail throws exception with no arguments ok 37 - addAuditTrail throws exception with bad array ok 38 - setAuditTrail accepts empty array ref ok 39 - getAuditTrail throws exception with argument ok 40 - setAuditTrail throws exception with no argument ok 41 - setAuditTrail throws exception with too many argument ok 42 - setAuditTrail accepts undef ok 43 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 47 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 48 - propertySets set in new() ok 49 - setPropertySets returns correct value ok 50 - getPropertySets fetches correct value ok 51 - addPropertySets returns number of items in list ok 52 - addPropertySets adds correct value ok 53 - setPropertySets throws exception with non-array argument ok 54 - setPropertySets throws exception with bad argument array ok 55 - addPropertySets throws exception with no arguments ok 56 - addPropertySets throws exception with bad array ok 57 - setPropertySets accepts empty array ref ok 58 - getPropertySets throws exception with argument ok 59 - setPropertySets throws exception with no argument ok 60 - setPropertySets throws exception with too many argument ok 61 - setPropertySets accepts undef ok 62 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 63 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 64 - propertySets->other() is a valid Bio::MAGE::Association::End ok 65 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 66 - propertySets->self() is a valid Bio::MAGE::Association::End ok 67 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 68 - setSurfaceType returns value ok 69 - getSurfaceType fetches correct value ok 70 - setSurfaceType throws exception with bad argument ok 71 - getSurfaceType throws exception with argument ok 72 - setSurfaceType throws exception with no argument ok 73 - setSurfaceType throws exception with too many argument ok 74 - setSurfaceType accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - surfaceType->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - surfaceType->self() is a valid Bio::MAGE::Association::End ok 80 - designProviders set in new() ok 81 - setDesignProviders returns correct value ok 82 - getDesignProviders fetches correct value ok 83 - addDesignProviders returns number of items in list ok 84 - addDesignProviders adds correct value ok 85 - setDesignProviders throws exception with non-array argument ok 86 - setDesignProviders throws exception with bad argument array ok 87 - addDesignProviders throws exception with no arguments ok 88 - addDesignProviders throws exception with bad array ok 89 - setDesignProviders accepts empty array ref ok 90 - getDesignProviders throws exception with argument ok 91 - setDesignProviders throws exception with no argument ok 92 - setDesignProviders throws exception with too many argument ok 93 - setDesignProviders accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - designProviders->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - designProviders->self() is a valid Bio::MAGE::Association::End ok 99 - protocolApplications set in new() ok 100 - setProtocolApplications returns correct value ok 101 - getProtocolApplications fetches correct value ok 102 - addProtocolApplications returns number of items in list ok 103 - addProtocolApplications adds correct value ok 104 - setProtocolApplications throws exception with non-array argument ok 105 - setProtocolApplications throws exception with bad argument array ok 106 - addProtocolApplications throws exception with no arguments ok 107 - addProtocolApplications throws exception with bad array ok 108 - setProtocolApplications accepts empty array ref ok 109 - getProtocolApplications throws exception with argument ok 110 - setProtocolApplications throws exception with no argument ok 111 - setProtocolApplications throws exception with too many argument ok 112 - setProtocolApplications accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 118 - reporterGroups set in new() ok 119 - setReporterGroups returns correct value ok 120 - getReporterGroups fetches correct value ok 121 - addReporterGroups returns number of items in list ok 122 - addReporterGroups adds correct value ok 123 - setReporterGroups throws exception with non-array argument ok 124 - setReporterGroups throws exception with bad argument array ok 125 - addReporterGroups throws exception with no arguments ok 126 - addReporterGroups throws exception with bad array ok 127 - setReporterGroups accepts empty array ref ok 128 - getReporterGroups throws exception with argument ok 129 - setReporterGroups throws exception with no argument ok 130 - setReporterGroups throws exception with too many argument ok 131 - setReporterGroups accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - reporterGroups->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - reporterGroups->self() is a valid Bio::MAGE::Association::End ok 137 - zoneGroups set in new() ok 138 - setZoneGroups returns correct value ok 139 - getZoneGroups fetches correct value ok 140 - addZoneGroups returns number of items in list ok 141 - addZoneGroups adds correct value ok 142 - setZoneGroups throws exception with non-array argument ok 143 - setZoneGroups throws exception with bad argument array ok 144 - addZoneGroups throws exception with no arguments ok 145 - addZoneGroups throws exception with bad array ok 146 - setZoneGroups accepts empty array ref ok 147 - getZoneGroups throws exception with argument ok 148 - setZoneGroups throws exception with no argument ok 149 - setZoneGroups throws exception with too many argument ok 150 - setZoneGroups accepts undef ok 151 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 152 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 153 - zoneGroups->other() is a valid Bio::MAGE::Association::End ok 154 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 155 - zoneGroups->self() is a valid Bio::MAGE::Association::End ok 156 - featureGroups set in new() ok 157 - setFeatureGroups returns correct value ok 158 - getFeatureGroups fetches correct value ok 159 - addFeatureGroups returns number of items in list ok 160 - addFeatureGroups adds correct value ok 161 - setFeatureGroups throws exception with non-array argument ok 162 - setFeatureGroups throws exception with bad argument array ok 163 - addFeatureGroups throws exception with no arguments ok 164 - addFeatureGroups throws exception with bad array ok 165 - setFeatureGroups accepts empty array ref ok 166 - getFeatureGroups throws exception with argument ok 167 - setFeatureGroups throws exception with no argument ok 168 - setFeatureGroups throws exception with too many argument ok 169 - setFeatureGroups accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - featureGroups->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - featureGroups->self() is a valid Bio::MAGE::Association::End ok 175 - descriptions set in new() ok 176 - setDescriptions returns correct value ok 177 - getDescriptions fetches correct value ok 178 - addDescriptions returns number of items in list ok 179 - addDescriptions adds correct value ok 180 - setDescriptions throws exception with non-array argument ok 181 - setDescriptions throws exception with bad argument array ok 182 - addDescriptions throws exception with no arguments ok 183 - addDescriptions throws exception with bad array ok 184 - setDescriptions accepts empty array ref ok 185 - getDescriptions throws exception with argument ok 186 - setDescriptions throws exception with no argument ok 187 - setDescriptions throws exception with too many argument ok 188 - setDescriptions accepts undef ok 189 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 190 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 191 - descriptions->other() is a valid Bio::MAGE::Association::End ok 192 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 193 - descriptions->self() is a valid Bio::MAGE::Association::End ok 194 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 195 - setSecurity returns value ok 196 - getSecurity fetches correct value ok 197 - setSecurity throws exception with bad argument ok 198 - getSecurity throws exception with argument ok 199 - setSecurity throws exception with no argument ok 200 - setSecurity throws exception with too many argument ok 201 - setSecurity accepts undef ok 202 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 203 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 204 - security->other() is a valid Bio::MAGE::Association::End ok 205 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 206 - security->self() is a valid Bio::MAGE::Association::End ok 207 - compositeGroups set in new() ok 208 - setCompositeGroups returns correct value ok 209 - getCompositeGroups fetches correct value ok 210 - addCompositeGroups returns number of items in list ok 211 - addCompositeGroups adds correct value ok 212 - setCompositeGroups throws exception with non-array argument ok 213 - setCompositeGroups throws exception with bad argument array ok 214 - addCompositeGroups throws exception with no arguments ok 215 - addCompositeGroups throws exception with bad array ok 216 - setCompositeGroups accepts empty array ref ok 217 - getCompositeGroups throws exception with argument ok 218 - setCompositeGroups throws exception with no argument ok 219 - setCompositeGroups throws exception with too many argument ok 220 - setCompositeGroups accepts undef ok 221 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 222 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 223 - compositeGroups->other() is a valid Bio::MAGE::Association::End ok 224 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 225 - compositeGroups->self() is a valid Bio::MAGE::Association::End ok 226 - An object of class 'Bio::MAGE::ArrayDesign::ArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok 227 - An object of class 'Bio::MAGE::ArrayDesign::PhysicalArrayDesign' isa 'Bio::MAGE::ArrayDesign::ArrayDesign' ok t/PhysicalBioAssay.t ............. 1..177 ok 1 - use Bio::MAGE::BioAssay::PhysicalBioAssay; ok 2 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::PhysicalBioAssay' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - channels set in new() ok 18 - setChannels returns correct value ok 19 - getChannels fetches correct value ok 20 - addChannels returns number of items in list ok 21 - addChannels adds correct value ok 22 - setChannels throws exception with non-array argument ok 23 - setChannels throws exception with bad argument array ok 24 - addChannels throws exception with no arguments ok 25 - addChannels throws exception with bad array ok 26 - setChannels accepts empty array ref ok 27 - getChannels throws exception with argument ok 28 - setChannels throws exception with no argument ok 29 - setChannels throws exception with too many argument ok 30 - setChannels accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - channels->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - channels->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::BioAssay::BioAssayCreation' isa 'Bio::MAGE::BioAssay::BioAssayCreation' ok 37 - setBioAssayCreation returns value ok 38 - getBioAssayCreation fetches correct value ok 39 - setBioAssayCreation throws exception with bad argument ok 40 - getBioAssayCreation throws exception with argument ok 41 - setBioAssayCreation throws exception with no argument ok 42 - setBioAssayCreation throws exception with too many argument ok 43 - setBioAssayCreation accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - bioAssayCreation->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - bioAssayCreation->self() is a valid Bio::MAGE::Association::End ok 49 - auditTrail set in new() ok 50 - setAuditTrail returns correct value ok 51 - getAuditTrail fetches correct value ok 52 - addAuditTrail returns number of items in list ok 53 - addAuditTrail adds correct value ok 54 - setAuditTrail throws exception with non-array argument ok 55 - setAuditTrail throws exception with bad argument array ok 56 - addAuditTrail throws exception with no arguments ok 57 - addAuditTrail throws exception with bad array ok 58 - setAuditTrail accepts empty array ref ok 59 - getAuditTrail throws exception with argument ok 60 - setAuditTrail throws exception with no argument ok 61 - setAuditTrail throws exception with too many argument ok 62 - setAuditTrail accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 68 - propertySets set in new() ok 69 - setPropertySets returns correct value ok 70 - getPropertySets fetches correct value ok 71 - addPropertySets returns number of items in list ok 72 - addPropertySets adds correct value ok 73 - setPropertySets throws exception with non-array argument ok 74 - setPropertySets throws exception with bad argument array ok 75 - addPropertySets throws exception with no arguments ok 76 - addPropertySets throws exception with bad array ok 77 - setPropertySets accepts empty array ref ok 78 - getPropertySets throws exception with argument ok 79 - setPropertySets throws exception with no argument ok 80 - setPropertySets throws exception with too many argument ok 81 - setPropertySets accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - propertySets->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - propertySets->self() is a valid Bio::MAGE::Association::End ok 87 - physicalBioAssayData set in new() ok 88 - setPhysicalBioAssayData returns correct value ok 89 - getPhysicalBioAssayData fetches correct value ok 90 - addPhysicalBioAssayData returns number of items in list ok 91 - addPhysicalBioAssayData adds correct value ok 92 - setPhysicalBioAssayData throws exception with non-array argument ok 93 - setPhysicalBioAssayData throws exception with bad argument array ok 94 - addPhysicalBioAssayData throws exception with no arguments ok 95 - addPhysicalBioAssayData throws exception with bad array ok 96 - setPhysicalBioAssayData accepts empty array ref ok 97 - getPhysicalBioAssayData throws exception with argument ok 98 - setPhysicalBioAssayData throws exception with no argument ok 99 - setPhysicalBioAssayData throws exception with too many argument ok 100 - setPhysicalBioAssayData accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - physicalBioAssayData->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - physicalBioAssayData->self() is a valid Bio::MAGE::Association::End ok 106 - bioAssayFactorValues set in new() ok 107 - setBioAssayFactorValues returns correct value ok 108 - getBioAssayFactorValues fetches correct value ok 109 - addBioAssayFactorValues returns number of items in list ok 110 - addBioAssayFactorValues adds correct value ok 111 - setBioAssayFactorValues throws exception with non-array argument ok 112 - setBioAssayFactorValues throws exception with bad argument array ok 113 - addBioAssayFactorValues throws exception with no arguments ok 114 - addBioAssayFactorValues throws exception with bad array ok 115 - setBioAssayFactorValues accepts empty array ref ok 116 - getBioAssayFactorValues throws exception with argument ok 117 - setBioAssayFactorValues throws exception with no argument ok 118 - setBioAssayFactorValues throws exception with too many argument ok 119 - setBioAssayFactorValues accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - bioAssayFactorValues->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - bioAssayFactorValues->self() is a valid Bio::MAGE::Association::End ok 125 - bioAssayTreatments set in new() ok 126 - setBioAssayTreatments returns correct value ok 127 - getBioAssayTreatments fetches correct value ok 128 - addBioAssayTreatments returns number of items in list ok 129 - addBioAssayTreatments adds correct value ok 130 - setBioAssayTreatments throws exception with non-array argument ok 131 - setBioAssayTreatments throws exception with bad argument array ok 132 - addBioAssayTreatments throws exception with no arguments ok 133 - addBioAssayTreatments throws exception with bad array ok 134 - setBioAssayTreatments accepts empty array ref ok 135 - getBioAssayTreatments throws exception with argument ok 136 - setBioAssayTreatments throws exception with no argument ok 137 - setBioAssayTreatments throws exception with too many argument ok 138 - setBioAssayTreatments accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - bioAssayTreatments->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - bioAssayTreatments->self() is a valid Bio::MAGE::Association::End ok 144 - descriptions set in new() ok 145 - setDescriptions returns correct value ok 146 - getDescriptions fetches correct value ok 147 - addDescriptions returns number of items in list ok 148 - addDescriptions adds correct value ok 149 - setDescriptions throws exception with non-array argument ok 150 - setDescriptions throws exception with bad argument array ok 151 - addDescriptions throws exception with no arguments ok 152 - addDescriptions throws exception with bad array ok 153 - setDescriptions accepts empty array ref ok 154 - getDescriptions throws exception with argument ok 155 - setDescriptions throws exception with no argument ok 156 - setDescriptions throws exception with too many argument ok 157 - setDescriptions accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - descriptions->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - descriptions->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 164 - setSecurity returns value ok 165 - getSecurity fetches correct value ok 166 - setSecurity throws exception with bad argument ok 167 - getSecurity throws exception with argument ok 168 - setSecurity throws exception with no argument ok 169 - setSecurity throws exception with too many argument ok 170 - setSecurity accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - security->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - security->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioAssay::BioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok 177 - An object of class 'Bio::MAGE::BioAssay::PhysicalBioAssay' isa 'Bio::MAGE::BioAssay::BioAssay' ok t/Position.t ..................... 1..50 ok 1 - use Bio::MAGE::DesignElement::Position; ok 2 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::DesignElement::Position' ok 3 - package ok 4 - class_name ok 5 - y new ok 6 - y getter/setter ok 7 - y getter throws exception with argument ok 8 - y setter throws exception with no argument ok 9 - y setter throws exception with too many argument ok 10 - y setter accepts undef ok 11 - x new ok 12 - x getter/setter ok 13 - x getter throws exception with argument ok 14 - x setter throws exception with no argument ok 15 - x setter throws exception with too many argument ok 16 - x setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::DesignElement::Position' isa 'Bio::MAGE::Extendable' ok t/PositionDelta.t ................ 1..50 ok 1 - use Bio::MAGE::Array::PositionDelta; ok 2 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 3 - package ok 4 - class_name ok 5 - deltaX new ok 6 - deltaX getter/setter ok 7 - deltaX getter throws exception with argument ok 8 - deltaX setter throws exception with no argument ok 9 - deltaX setter throws exception with too many argument ok 10 - deltaX setter accepts undef ok 11 - deltaY new ok 12 - deltaY getter/setter ok 13 - deltaY getter throws exception with argument ok 14 - deltaY setter throws exception with no argument ok 15 - deltaY setter throws exception with too many argument ok 16 - deltaY setter accepts undef ok 17 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 18 - setDistanceUnit returns value ok 19 - getDistanceUnit fetches correct value ok 20 - setDistanceUnit throws exception with bad argument ok 21 - getDistanceUnit throws exception with argument ok 22 - setDistanceUnit throws exception with no argument ok 23 - setDistanceUnit throws exception with too many argument ok 24 - setDistanceUnit accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 30 - propertySets set in new() ok 31 - setPropertySets returns correct value ok 32 - getPropertySets fetches correct value ok 33 - addPropertySets returns number of items in list ok 34 - addPropertySets adds correct value ok 35 - setPropertySets throws exception with non-array argument ok 36 - setPropertySets throws exception with bad argument array ok 37 - addPropertySets throws exception with no arguments ok 38 - addPropertySets throws exception with bad array ok 39 - setPropertySets accepts empty array ref ok 40 - getPropertySets throws exception with argument ok 41 - setPropertySets throws exception with no argument ok 42 - setPropertySets throws exception with too many argument ok 43 - setPropertySets accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - propertySets->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - propertySets->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 50 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Extendable' ok t/PresentAbsent.t ................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::PresentAbsent; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Protocol.t ..................... 1..176 ok 1 - use Bio::MAGE::Protocol::Protocol; ok 2 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - text new ok 18 - text getter/setter ok 19 - text getter throws exception with argument ok 20 - text setter throws exception with no argument ok 21 - text setter throws exception with too many argument ok 22 - text setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - title new ok 30 - title getter/setter ok 31 - title getter throws exception with argument ok 32 - title setter throws exception with no argument ok 33 - title setter throws exception with too many argument ok 34 - title setter accepts undef ok 35 - parameterTypes set in new() ok 36 - setParameterTypes returns correct value ok 37 - getParameterTypes fetches correct value ok 38 - addParameterTypes returns number of items in list ok 39 - addParameterTypes adds correct value ok 40 - setParameterTypes throws exception with non-array argument ok 41 - setParameterTypes throws exception with bad argument array ok 42 - addParameterTypes throws exception with no arguments ok 43 - addParameterTypes throws exception with bad array ok 44 - setParameterTypes accepts empty array ref ok 45 - getParameterTypes throws exception with argument ok 46 - setParameterTypes throws exception with no argument ok 47 - setParameterTypes throws exception with too many argument ok 48 - setParameterTypes accepts undef ok 49 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 50 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 51 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 52 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 53 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 54 - auditTrail set in new() ok 55 - setAuditTrail returns correct value ok 56 - getAuditTrail fetches correct value ok 57 - addAuditTrail returns number of items in list ok 58 - addAuditTrail adds correct value ok 59 - setAuditTrail throws exception with non-array argument ok 60 - setAuditTrail throws exception with bad argument array ok 61 - addAuditTrail throws exception with no arguments ok 62 - addAuditTrail throws exception with bad array ok 63 - setAuditTrail accepts empty array ref ok 64 - getAuditTrail throws exception with argument ok 65 - setAuditTrail throws exception with no argument ok 66 - setAuditTrail throws exception with too many argument ok 67 - setAuditTrail accepts undef ok 68 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 69 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 70 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 71 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 72 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 73 - propertySets set in new() ok 74 - setPropertySets returns correct value ok 75 - getPropertySets fetches correct value ok 76 - addPropertySets returns number of items in list ok 77 - addPropertySets adds correct value ok 78 - setPropertySets throws exception with non-array argument ok 79 - setPropertySets throws exception with bad argument array ok 80 - addPropertySets throws exception with no arguments ok 81 - addPropertySets throws exception with bad array ok 82 - setPropertySets accepts empty array ref ok 83 - getPropertySets throws exception with argument ok 84 - setPropertySets throws exception with no argument ok 85 - setPropertySets throws exception with too many argument ok 86 - setPropertySets accepts undef ok 87 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 88 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 89 - propertySets->other() is a valid Bio::MAGE::Association::End ok 90 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 91 - propertySets->self() is a valid Bio::MAGE::Association::End ok 92 - hardwares set in new() ok 93 - setHardwares returns correct value ok 94 - getHardwares fetches correct value ok 95 - addHardwares returns number of items in list ok 96 - addHardwares adds correct value ok 97 - setHardwares throws exception with non-array argument ok 98 - setHardwares throws exception with bad argument array ok 99 - addHardwares throws exception with no arguments ok 100 - addHardwares throws exception with bad array ok 101 - setHardwares accepts empty array ref ok 102 - getHardwares throws exception with argument ok 103 - setHardwares throws exception with no argument ok 104 - setHardwares throws exception with too many argument ok 105 - setHardwares accepts undef ok 106 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 107 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 108 - hardwares->other() is a valid Bio::MAGE::Association::End ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - hardwares->self() is a valid Bio::MAGE::Association::End ok 111 - descriptions set in new() ok 112 - setDescriptions returns correct value ok 113 - getDescriptions fetches correct value ok 114 - addDescriptions returns number of items in list ok 115 - addDescriptions adds correct value ok 116 - setDescriptions throws exception with non-array argument ok 117 - setDescriptions throws exception with bad argument array ok 118 - addDescriptions throws exception with no arguments ok 119 - addDescriptions throws exception with bad array ok 120 - setDescriptions accepts empty array ref ok 121 - getDescriptions throws exception with argument ok 122 - setDescriptions throws exception with no argument ok 123 - setDescriptions throws exception with too many argument ok 124 - setDescriptions accepts undef ok 125 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 126 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 127 - descriptions->other() is a valid Bio::MAGE::Association::End ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - descriptions->self() is a valid Bio::MAGE::Association::End ok 130 - softwares set in new() ok 131 - setSoftwares returns correct value ok 132 - getSoftwares fetches correct value ok 133 - addSoftwares returns number of items in list ok 134 - addSoftwares adds correct value ok 135 - setSoftwares throws exception with non-array argument ok 136 - setSoftwares throws exception with bad argument array ok 137 - addSoftwares throws exception with no arguments ok 138 - addSoftwares throws exception with bad array ok 139 - setSoftwares accepts empty array ref ok 140 - getSoftwares throws exception with argument ok 141 - setSoftwares throws exception with no argument ok 142 - setSoftwares throws exception with too many argument ok 143 - setSoftwares accepts undef ok 144 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 145 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 146 - softwares->other() is a valid Bio::MAGE::Association::End ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - softwares->self() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 150 - setSecurity returns value ok 151 - getSecurity fetches correct value ok 152 - setSecurity throws exception with bad argument ok 153 - getSecurity throws exception with argument ok 154 - setSecurity throws exception with no argument ok 155 - setSecurity throws exception with too many argument ok 156 - setSecurity accepts undef ok 157 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 158 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 159 - security->other() is a valid Bio::MAGE::Association::End ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - security->self() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 163 - setType returns value ok 164 - getType fetches correct value ok 165 - setType throws exception with bad argument ok 166 - getType throws exception with argument ok 167 - setType throws exception with no argument ok 168 - setType throws exception with too many argument ok 169 - setType accepts undef ok 170 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 171 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 172 - type->other() is a valid Bio::MAGE::Association::End ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - type->self() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 176 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/Protocol_package.t ............. 1..33 ok 1 - use Bio::MAGE::Protocol; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 4 - An object of class 'Bio::MAGE::Protocol::Parameter' isa 'Bio::MAGE::Protocol::Parameter' ok 5 - An object of class 'Bio::MAGE::Protocol::ParameterValue' isa 'Bio::MAGE::Protocol::ParameterValue' ok 6 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 7 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 8 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 9 - An object of class 'Bio::MAGE::Protocol::HardwareApplication' isa 'Bio::MAGE::Protocol::HardwareApplication' ok 10 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 11 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 12 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 13 - An object of class 'Bio::MAGE::Protocol' isa 'Bio::MAGE::Protocol' ok 14 - tagname ok 15 - xml_lists ok 16 - A reference of type 'ARRAY' isa 'ARRAY' ok 17 - hardware_list empty ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - getHardware_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getHardware_list not empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - software_list empty ok 24 - A reference of type 'ARRAY' isa 'ARRAY' ok 25 - getSoftware_list empty ok 26 - A reference of type 'ARRAY' isa 'ARRAY' ok 27 - getSoftware_list not empty ok 28 - A reference of type 'ARRAY' isa 'ARRAY' ok 29 - protocol_list empty ok 30 - A reference of type 'ARRAY' isa 'ARRAY' ok 31 - getProtocol_list empty ok 32 - A reference of type 'ARRAY' isa 'ARRAY' ok 33 - getProtocol_list not empty ok t/ProtocolApplication.t .......... 1..171 ok 1 - use Bio::MAGE::Protocol::ProtocolApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ProtocolApplication' ok 3 - package ok 4 - class_name ok 5 - activityDate new ok 6 - activityDate getter/setter ok 7 - activityDate getter throws exception with argument ok 8 - activityDate setter throws exception with no argument ok 9 - activityDate setter throws exception with too many argument ok 10 - activityDate setter accepts undef ok 11 - An object of class 'Bio::MAGE::Protocol::Protocol' isa 'Bio::MAGE::Protocol::Protocol' ok 12 - setProtocol returns value ok 13 - getProtocol fetches correct value ok 14 - setProtocol throws exception with bad argument ok 15 - getProtocol throws exception with argument ok 16 - setProtocol throws exception with no argument ok 17 - setProtocol throws exception with too many argument ok 18 - setProtocol accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - protocol->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - protocol->self() is a valid Bio::MAGE::Association::End ok 24 - hardwareApplications set in new() ok 25 - setHardwareApplications returns correct value ok 26 - getHardwareApplications fetches correct value ok 27 - addHardwareApplications returns number of items in list ok 28 - addHardwareApplications adds correct value ok 29 - setHardwareApplications throws exception with non-array argument ok 30 - setHardwareApplications throws exception with bad argument array ok 31 - addHardwareApplications throws exception with no arguments ok 32 - addHardwareApplications throws exception with bad array ok 33 - setHardwareApplications accepts empty array ref ok 34 - getHardwareApplications throws exception with argument ok 35 - setHardwareApplications throws exception with no argument ok 36 - setHardwareApplications throws exception with too many argument ok 37 - setHardwareApplications accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - hardwareApplications->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - hardwareApplications->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - softwareApplications set in new() ok 82 - setSoftwareApplications returns correct value ok 83 - getSoftwareApplications fetches correct value ok 84 - addSoftwareApplications returns number of items in list ok 85 - addSoftwareApplications adds correct value ok 86 - setSoftwareApplications throws exception with non-array argument ok 87 - setSoftwareApplications throws exception with bad argument array ok 88 - addSoftwareApplications throws exception with no arguments ok 89 - addSoftwareApplications throws exception with bad array ok 90 - setSoftwareApplications accepts empty array ref ok 91 - getSoftwareApplications throws exception with argument ok 92 - setSoftwareApplications throws exception with no argument ok 93 - setSoftwareApplications throws exception with too many argument ok 94 - setSoftwareApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - softwareApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - softwareApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - performers set in new() ok 133 - setPerformers returns correct value ok 134 - getPerformers fetches correct value ok 135 - addPerformers returns number of items in list ok 136 - addPerformers adds correct value ok 137 - setPerformers throws exception with non-array argument ok 138 - setPerformers throws exception with bad argument array ok 139 - addPerformers throws exception with no arguments ok 140 - addPerformers throws exception with bad array ok 141 - setPerformers accepts empty array ref ok 142 - getPerformers throws exception with argument ok 143 - setPerformers throws exception with no argument ok 144 - setPerformers throws exception with too many argument ok 145 - setPerformers accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - performers->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - performers->self() is a valid Bio::MAGE::Association::End ok 151 - parameterValues set in new() ok 152 - setParameterValues returns correct value ok 153 - getParameterValues fetches correct value ok 154 - addParameterValues returns number of items in list ok 155 - addParameterValues adds correct value ok 156 - setParameterValues throws exception with non-array argument ok 157 - setParameterValues throws exception with bad argument array ok 158 - addParameterValues throws exception with no arguments ok 159 - addParameterValues throws exception with bad array ok 160 - setParameterValues accepts empty array ref ok 161 - getParameterValues throws exception with argument ok 162 - setParameterValues throws exception with no argument ok 163 - setParameterValues throws exception with too many argument ok 164 - setParameterValues accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 171 - An object of class 'Bio::MAGE::Protocol::ProtocolApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/PValue.t ....................... 1..184 ok 1 - use Bio::MAGE::QuantitationType::PValue; ok 2 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - auditTrail set in new() ok 37 - setAuditTrail returns correct value ok 38 - getAuditTrail fetches correct value ok 39 - addAuditTrail returns number of items in list ok 40 - addAuditTrail adds correct value ok 41 - setAuditTrail throws exception with non-array argument ok 42 - setAuditTrail throws exception with bad argument array ok 43 - addAuditTrail throws exception with no arguments ok 44 - addAuditTrail throws exception with bad array ok 45 - setAuditTrail accepts empty array ref ok 46 - getAuditTrail throws exception with argument ok 47 - setAuditTrail throws exception with no argument ok 48 - setAuditTrail throws exception with too many argument ok 49 - setAuditTrail accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 75 - setChannel returns value ok 76 - getChannel fetches correct value ok 77 - setChannel throws exception with bad argument ok 78 - getChannel throws exception with argument ok 79 - setChannel throws exception with no argument ok 80 - setChannel throws exception with too many argument ok 81 - setChannel accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - channel->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - channel->self() is a valid Bio::MAGE::Association::End ok 87 - confidenceIndicators set in new() ok 88 - setConfidenceIndicators returns correct value ok 89 - getConfidenceIndicators fetches correct value ok 90 - addConfidenceIndicators returns number of items in list ok 91 - addConfidenceIndicators adds correct value ok 92 - setConfidenceIndicators throws exception with non-array argument ok 93 - setConfidenceIndicators throws exception with bad argument array ok 94 - addConfidenceIndicators throws exception with no arguments ok 95 - addConfidenceIndicators throws exception with bad array ok 96 - setConfidenceIndicators accepts empty array ref ok 97 - getConfidenceIndicators throws exception with argument ok 98 - setConfidenceIndicators throws exception with no argument ok 99 - setConfidenceIndicators throws exception with too many argument ok 100 - setConfidenceIndicators accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 106 - descriptions set in new() ok 107 - setDescriptions returns correct value ok 108 - getDescriptions fetches correct value ok 109 - addDescriptions returns number of items in list ok 110 - addDescriptions adds correct value ok 111 - setDescriptions throws exception with non-array argument ok 112 - setDescriptions throws exception with bad argument array ok 113 - addDescriptions throws exception with no arguments ok 114 - addDescriptions throws exception with bad array ok 115 - setDescriptions accepts empty array ref ok 116 - getDescriptions throws exception with argument ok 117 - setDescriptions throws exception with no argument ok 118 - setDescriptions throws exception with too many argument ok 119 - setDescriptions accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - descriptions->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - descriptions->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 126 - setSecurity returns value ok 127 - getSecurity fetches correct value ok 128 - setSecurity throws exception with bad argument ok 129 - getSecurity throws exception with argument ok 130 - setSecurity throws exception with no argument ok 131 - setSecurity throws exception with too many argument ok 132 - setSecurity accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - security->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - security->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 139 - setScale returns value ok 140 - getScale fetches correct value ok 141 - setScale throws exception with bad argument ok 142 - getScale throws exception with argument ok 143 - setScale throws exception with no argument ok 144 - setScale throws exception with too many argument ok 145 - setScale accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - scale->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - scale->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 152 - setTargetQuantitationType returns value ok 153 - getTargetQuantitationType fetches correct value ok 154 - setTargetQuantitationType throws exception with bad argument ok 155 - getTargetQuantitationType throws exception with argument ok 156 - setTargetQuantitationType throws exception with no argument ok 157 - setTargetQuantitationType throws exception with too many argument ok 158 - setTargetQuantitationType accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 164 - quantitationTypeMaps set in new() ok 165 - setQuantitationTypeMaps returns correct value ok 166 - getQuantitationTypeMaps fetches correct value ok 167 - addQuantitationTypeMaps returns number of items in list ok 168 - addQuantitationTypeMaps adds correct value ok 169 - setQuantitationTypeMaps throws exception with non-array argument ok 170 - setQuantitationTypeMaps throws exception with bad argument array ok 171 - addQuantitationTypeMaps throws exception with no arguments ok 172 - addQuantitationTypeMaps throws exception with bad array ok 173 - setQuantitationTypeMaps accepts empty array ref ok 174 - getQuantitationTypeMaps throws exception with argument ok 175 - setQuantitationTypeMaps throws exception with no argument ok 176 - setQuantitationTypeMaps throws exception with too many argument ok 177 - setQuantitationTypeMaps accepts undef ok 178 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 179 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 180 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 181 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 182 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 183 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 184 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok t/QuantitationType.t ............. 1..175 ok 1 - use Bio::MAGE::QuantitationType::QuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 173 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 174 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 175 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::Identifiable' ok t/QuantitationType_package.t ..... 1..23 ok 1 - use Bio::MAGE::QuantitationType; ok 2 - number of subclasses ok 3 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 4 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 5 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 6 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 7 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 8 - An object of class 'Bio::MAGE::QuantitationType::Error' isa 'Bio::MAGE::QuantitationType::Error' ok 9 - An object of class 'Bio::MAGE::QuantitationType::PValue' isa 'Bio::MAGE::QuantitationType::PValue' ok 10 - An object of class 'Bio::MAGE::QuantitationType::ExpectedValue' isa 'Bio::MAGE::QuantitationType::ExpectedValue' ok 11 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 12 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 13 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 14 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 15 - An object of class 'Bio::MAGE::QuantitationType' isa 'Bio::MAGE::QuantitationType' ok 16 - tagname ok 17 - xml_lists ok 18 - A reference of type 'ARRAY' isa 'ARRAY' ok 19 - quantitationtype_list empty ok 20 - A reference of type 'ARRAY' isa 'ARRAY' ok 21 - getQuantitationType_list empty ok 22 - A reference of type 'ARRAY' isa 'ARRAY' ok 23 - getQuantitationType_list not empty ok t/QuantitationTypeDimension.t .... 1..107 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - quantitationTypes set in new() ok 18 - setQuantitationTypes returns correct value ok 19 - getQuantitationTypes fetches correct value ok 20 - addQuantitationTypes returns number of items in list ok 21 - addQuantitationTypes adds correct value ok 22 - setQuantitationTypes throws exception with non-array argument ok 23 - setQuantitationTypes throws exception with bad argument array ok 24 - addQuantitationTypes throws exception with no arguments ok 25 - addQuantitationTypes throws exception with bad array ok 26 - setQuantitationTypes accepts empty array ref ok 27 - getQuantitationTypes throws exception with argument ok 28 - setQuantitationTypes throws exception with no argument ok 29 - setQuantitationTypes throws exception with too many argument ok 30 - setQuantitationTypes accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - quantitationTypes->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - quantitationTypes->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeDimension' isa 'Bio::MAGE::Identifiable' ok t/QuantitationTypeMap.t .......... 1..139 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMap; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - protocolApplications set in new() ok 18 - setProtocolApplications returns correct value ok 19 - getProtocolApplications fetches correct value ok 20 - addProtocolApplications returns number of items in list ok 21 - addProtocolApplications adds correct value ok 22 - setProtocolApplications throws exception with non-array argument ok 23 - setProtocolApplications throws exception with bad argument array ok 24 - addProtocolApplications throws exception with no arguments ok 25 - addProtocolApplications throws exception with bad array ok 26 - setProtocolApplications accepts empty array ref ok 27 - getProtocolApplications throws exception with argument ok 28 - setProtocolApplications throws exception with no argument ok 29 - setProtocolApplications throws exception with too many argument ok 30 - setProtocolApplications accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 36 - sourcesQuantitationType set in new() ok 37 - setSourcesQuantitationType returns correct value ok 38 - getSourcesQuantitationType fetches correct value ok 39 - addSourcesQuantitationType returns number of items in list ok 40 - addSourcesQuantitationType adds correct value ok 41 - setSourcesQuantitationType throws exception with non-array argument ok 42 - setSourcesQuantitationType throws exception with bad argument array ok 43 - addSourcesQuantitationType throws exception with no arguments ok 44 - addSourcesQuantitationType throws exception with bad array ok 45 - setSourcesQuantitationType accepts empty array ref ok 46 - getSourcesQuantitationType throws exception with argument ok 47 - setSourcesQuantitationType throws exception with no argument ok 48 - setSourcesQuantitationType throws exception with too many argument ok 49 - setSourcesQuantitationType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - sourcesQuantitationType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - sourcesQuantitationType->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - auditTrail set in new() ok 88 - setAuditTrail returns correct value ok 89 - getAuditTrail fetches correct value ok 90 - addAuditTrail returns number of items in list ok 91 - addAuditTrail adds correct value ok 92 - setAuditTrail throws exception with non-array argument ok 93 - setAuditTrail throws exception with bad argument array ok 94 - addAuditTrail throws exception with no arguments ok 95 - addAuditTrail throws exception with bad array ok 96 - setAuditTrail accepts empty array ref ok 97 - getAuditTrail throws exception with argument ok 98 - setAuditTrail throws exception with no argument ok 99 - setAuditTrail throws exception with too many argument ok 100 - setAuditTrail accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 107 - setTargetQuantitationType returns value ok 108 - getTargetQuantitationType fetches correct value ok 109 - setTargetQuantitationType throws exception with bad argument ok 110 - getTargetQuantitationType throws exception with argument ok 111 - setTargetQuantitationType throws exception with no argument ok 112 - setTargetQuantitationType throws exception with too many argument ok 113 - setTargetQuantitationType accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - targetQuantitationType->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - targetQuantitationType->self() is a valid Bio::MAGE::Association::End ok 119 - propertySets set in new() ok 120 - setPropertySets returns correct value ok 121 - getPropertySets fetches correct value ok 122 - addPropertySets returns number of items in list ok 123 - addPropertySets adds correct value ok 124 - setPropertySets throws exception with non-array argument ok 125 - setPropertySets throws exception with bad argument array ok 126 - addPropertySets throws exception with no arguments ok 127 - addPropertySets throws exception with bad array ok 128 - setPropertySets accepts empty array ref ok 129 - getPropertySets throws exception with argument ok 130 - setPropertySets throws exception with no argument ok 131 - setPropertySets throws exception with too many argument ok 132 - setPropertySets accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - propertySets->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioEvent::Map' isa 'Bio::MAGE::BioEvent::Map' ok 139 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMap' isa 'Bio::MAGE::BioEvent::Map' ok t/QuantitationTypeMapping.t ...... 1..44 ok 1 - use Bio::MAGE::BioAssayData::QuantitationTypeMapping; ok 2 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 3 - package ok 4 - class_name ok 5 - propertySets set in new() ok 6 - setPropertySets returns correct value ok 7 - getPropertySets fetches correct value ok 8 - addPropertySets returns number of items in list ok 9 - addPropertySets adds correct value ok 10 - setPropertySets throws exception with non-array argument ok 11 - setPropertySets throws exception with bad argument array ok 12 - addPropertySets throws exception with no arguments ok 13 - addPropertySets throws exception with bad array ok 14 - setPropertySets accepts empty array ref ok 15 - getPropertySets throws exception with argument ok 16 - setPropertySets throws exception with no argument ok 17 - setPropertySets throws exception with too many argument ok 18 - setPropertySets accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - propertySets->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - propertySets->self() is a valid Bio::MAGE::Association::End ok 24 - quantitationTypeMaps set in new() ok 25 - setQuantitationTypeMaps returns correct value ok 26 - getQuantitationTypeMaps fetches correct value ok 27 - addQuantitationTypeMaps returns number of items in list ok 28 - addQuantitationTypeMaps adds correct value ok 29 - setQuantitationTypeMaps throws exception with non-array argument ok 30 - setQuantitationTypeMaps throws exception with bad argument array ok 31 - addQuantitationTypeMaps throws exception with no arguments ok 32 - addQuantitationTypeMaps throws exception with bad array ok 33 - setQuantitationTypeMaps accepts empty array ref ok 34 - getQuantitationTypeMaps throws exception with argument ok 35 - setQuantitationTypeMaps throws exception with no argument ok 36 - setQuantitationTypeMaps throws exception with too many argument ok 37 - setQuantitationTypeMaps accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 43 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 44 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::Extendable' ok t/QuantityUnit.t ................. 1..47 ok 1 - use Bio::MAGE::Measurement::QuantityUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mol ok 19 - unitNameCV accepts amol ok 20 - unitNameCV accepts fmol ok 21 - unitNameCV accepts pmol ok 22 - unitNameCV accepts nmol ok 23 - unitNameCV accepts umol ok 24 - unitNameCV accepts mmol ok 25 - unitNameCV accepts molecules ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Ratio.t ........................ 1..171 ok 1 - use Bio::MAGE::QuantitationType::Ratio; ok 2 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 24 - setDataType returns value ok 25 - getDataType fetches correct value ok 26 - setDataType throws exception with bad argument ok 27 - getDataType throws exception with argument ok 28 - setDataType throws exception with no argument ok 29 - setDataType throws exception with too many argument ok 30 - setDataType accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - dataType->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - dataType->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 56 - setScale returns value ok 57 - getScale fetches correct value ok 58 - setScale throws exception with bad argument ok 59 - getScale throws exception with argument ok 60 - setScale throws exception with no argument ok 61 - setScale throws exception with too many argument ok 62 - setScale accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - scale->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - scale->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 69 - setSecurity returns value ok 70 - getSecurity fetches correct value ok 71 - setSecurity throws exception with bad argument ok 72 - getSecurity throws exception with argument ok 73 - setSecurity throws exception with no argument ok 74 - setSecurity throws exception with too many argument ok 75 - setSecurity accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - security->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - security->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 101 - setChannel returns value ok 102 - getChannel fetches correct value ok 103 - setChannel throws exception with bad argument ok 104 - getChannel throws exception with argument ok 105 - setChannel throws exception with no argument ok 106 - setChannel throws exception with too many argument ok 107 - setChannel accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - channel->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - channel->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok t/Reporter.t ..................... 1..171 ok 1 - use Bio::MAGE::DesignElement::Reporter; ok 2 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 18 - setWarningType returns value ok 19 - getWarningType fetches correct value ok 20 - setWarningType throws exception with bad argument ok 21 - getWarningType throws exception with argument ok 22 - setWarningType throws exception with no argument ok 23 - setWarningType throws exception with too many argument ok 24 - setWarningType accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - warningType->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - warningType->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 31 - setControlType returns value ok 32 - getControlType fetches correct value ok 33 - setControlType throws exception with bad argument ok 34 - getControlType throws exception with argument ok 35 - setControlType throws exception with no argument ok 36 - setControlType throws exception with too many argument ok 37 - setControlType accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - controlType->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - controlType->self() is a valid Bio::MAGE::Association::End ok 43 - failTypes set in new() ok 44 - setFailTypes returns correct value ok 45 - getFailTypes fetches correct value ok 46 - addFailTypes returns number of items in list ok 47 - addFailTypes adds correct value ok 48 - setFailTypes throws exception with non-array argument ok 49 - setFailTypes throws exception with bad argument array ok 50 - addFailTypes throws exception with no arguments ok 51 - addFailTypes throws exception with bad array ok 52 - setFailTypes accepts empty array ref ok 53 - getFailTypes throws exception with argument ok 54 - setFailTypes throws exception with no argument ok 55 - setFailTypes throws exception with too many argument ok 56 - setFailTypes accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - failTypes->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - failTypes->self() is a valid Bio::MAGE::Association::End ok 62 - descriptions set in new() ok 63 - setDescriptions returns correct value ok 64 - getDescriptions fetches correct value ok 65 - addDescriptions returns number of items in list ok 66 - addDescriptions adds correct value ok 67 - setDescriptions throws exception with non-array argument ok 68 - setDescriptions throws exception with bad argument array ok 69 - addDescriptions throws exception with no arguments ok 70 - addDescriptions throws exception with bad array ok 71 - setDescriptions accepts empty array ref ok 72 - getDescriptions throws exception with argument ok 73 - setDescriptions throws exception with no argument ok 74 - setDescriptions throws exception with too many argument ok 75 - setDescriptions accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - descriptions->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - descriptions->self() is a valid Bio::MAGE::Association::End ok 81 - auditTrail set in new() ok 82 - setAuditTrail returns correct value ok 83 - getAuditTrail fetches correct value ok 84 - addAuditTrail returns number of items in list ok 85 - addAuditTrail adds correct value ok 86 - setAuditTrail throws exception with non-array argument ok 87 - setAuditTrail throws exception with bad argument array ok 88 - addAuditTrail throws exception with no arguments ok 89 - addAuditTrail throws exception with bad array ok 90 - setAuditTrail accepts empty array ref ok 91 - getAuditTrail throws exception with argument ok 92 - setAuditTrail throws exception with no argument ok 93 - setAuditTrail throws exception with too many argument ok 94 - setAuditTrail accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 100 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 101 - setSecurity returns value ok 102 - getSecurity fetches correct value ok 103 - setSecurity throws exception with bad argument ok 104 - getSecurity throws exception with argument ok 105 - setSecurity throws exception with no argument ok 106 - setSecurity throws exception with too many argument ok 107 - setSecurity accepts undef ok 108 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 109 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 110 - security->other() is a valid Bio::MAGE::Association::End ok 111 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 112 - security->self() is a valid Bio::MAGE::Association::End ok 113 - propertySets set in new() ok 114 - setPropertySets returns correct value ok 115 - getPropertySets fetches correct value ok 116 - addPropertySets returns number of items in list ok 117 - addPropertySets adds correct value ok 118 - setPropertySets throws exception with non-array argument ok 119 - setPropertySets throws exception with bad argument array ok 120 - addPropertySets throws exception with no arguments ok 121 - addPropertySets throws exception with bad array ok 122 - setPropertySets accepts empty array ref ok 123 - getPropertySets throws exception with argument ok 124 - setPropertySets throws exception with no argument ok 125 - setPropertySets throws exception with too many argument ok 126 - setPropertySets accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - propertySets->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - propertySets->self() is a valid Bio::MAGE::Association::End ok 132 - immobilizedCharacteristics set in new() ok 133 - setImmobilizedCharacteristics returns correct value ok 134 - getImmobilizedCharacteristics fetches correct value ok 135 - addImmobilizedCharacteristics returns number of items in list ok 136 - addImmobilizedCharacteristics adds correct value ok 137 - setImmobilizedCharacteristics throws exception with non-array argument ok 138 - setImmobilizedCharacteristics throws exception with bad argument array ok 139 - addImmobilizedCharacteristics throws exception with no arguments ok 140 - addImmobilizedCharacteristics throws exception with bad array ok 141 - setImmobilizedCharacteristics accepts empty array ref ok 142 - getImmobilizedCharacteristics throws exception with argument ok 143 - setImmobilizedCharacteristics throws exception with no argument ok 144 - setImmobilizedCharacteristics throws exception with too many argument ok 145 - setImmobilizedCharacteristics accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - immobilizedCharacteristics->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - immobilizedCharacteristics->self() is a valid Bio::MAGE::Association::End ok 151 - featureReporterMaps set in new() ok 152 - setFeatureReporterMaps returns correct value ok 153 - getFeatureReporterMaps fetches correct value ok 154 - addFeatureReporterMaps returns number of items in list ok 155 - addFeatureReporterMaps adds correct value ok 156 - setFeatureReporterMaps throws exception with non-array argument ok 157 - setFeatureReporterMaps throws exception with bad argument array ok 158 - addFeatureReporterMaps throws exception with no arguments ok 159 - addFeatureReporterMaps throws exception with bad array ok 160 - setFeatureReporterMaps accepts empty array ref ok 161 - getFeatureReporterMaps throws exception with argument ok 162 - setFeatureReporterMaps throws exception with no argument ok 163 - setFeatureReporterMaps throws exception with too many argument ok 164 - setFeatureReporterMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - featureReporterMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - featureReporterMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::DesignElement::DesignElement' isa 'Bio::MAGE::DesignElement::DesignElement' ok 171 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::DesignElement' ok t/ReporterCompositeMap.t ......... 1..139 ok 1 - use Bio::MAGE::DesignElement::ReporterCompositeMap; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::DesignElement::ReporterCompositeMap' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporterPositionSources set in new() ok 18 - setReporterPositionSources returns correct value ok 19 - getReporterPositionSources fetches correct value ok 20 - addReporterPositionSources returns number of items in list ok 21 - addReporterPositionSources adds correct value ok 22 - setReporterPositionSources throws exception with non-array argument ok 23 - setReporterPositionSources throws exception with bad argument array ok 24 - addReporterPositionSources throws exception with no arguments ok 25 - addReporterPositionSources throws exception with bad array ok 26 - setReporterPositionSources accepts empty array ref ok 27 - getReporterPositionSources throws exception with argument ok 28 - setReporterPositionSources throws exception with no argument ok 29 - setReporterPositionSources throws exception with too many argument ok 30 - setReporterPositionSources accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporterPositionSources->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporterPositionSources->self() is a valid Bio::MAGE::Association::End ok 36 - protocolApplications set in new() ok 37 - setProtocolApplications returns correct value ok 38 - getProtocolApplications fetches correct value ok 39 - addProtocolApplications returns number of items in list ok 40 - addProtocolApplications adds correct value ok 41 - setProtocolApplications throws exception with non-array argument ok 42 - setProtocolApplications throws exception with bad argument array ok 43 - addProtocolApplications throws exception with no arguments ok 44 - addProtocolApplications throws exception with bad array ok 45 - setProtocolApplications accepts empty array ref ok 46 - getProtocolApplications throws exception with argument ok 47 - setProtocolApplications throws exception with no argument ok 48 - setProtocolApplications throws exception with too many argument ok 49 - setProtocolApplications accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::DesignElement::CompositeSequence' isa 'Bio::MAGE::DesignElement::CompositeSequence' ok 126 - setCompositeSequence returns value ok 127 - getCompositeSequence fetches correct value ok 128 - setCompositeSequence throws exception with bad argument ok 129 - getCompositeSequence throws exception with argument ok 130 - setCompositeSequence throws exception with no argument ok 131 - setCompositeSequence throws exception with too many argument ok 132 - setCompositeSequence accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - compositeSequence->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - compositeSequence->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok 139 - An object of class 'Bio::MAGE::DesignElement::ReporterCompositeMap' isa 'Bio::MAGE::BioAssayData::DesignElementMap' ok t/ReporterDimension.t ............ 1..107 ok 1 - use Bio::MAGE::BioAssayData::ReporterDimension; ok 2 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::ReporterDimension' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::BioAssayData::DesignElementDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok 107 - An object of class 'Bio::MAGE::BioAssayData::ReporterDimension' isa 'Bio::MAGE::BioAssayData::DesignElementDimension' ok t/ReporterGroup.t ................ 1..139 ok 1 - use Bio::MAGE::ArrayDesign::ReporterGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::ReporterGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - reporters set in new() ok 18 - setReporters returns correct value ok 19 - getReporters fetches correct value ok 20 - addReporters returns number of items in list ok 21 - addReporters adds correct value ok 22 - setReporters throws exception with non-array argument ok 23 - setReporters throws exception with bad argument array ok 24 - addReporters throws exception with no arguments ok 25 - addReporters throws exception with bad array ok 26 - setReporters accepts empty array ref ok 27 - getReporters throws exception with argument ok 28 - setReporters throws exception with no argument ok 29 - setReporters throws exception with too many argument ok 30 - setReporters accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - reporters->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - reporters->self() is a valid Bio::MAGE::Association::End ok 36 - types set in new() ok 37 - setTypes returns correct value ok 38 - getTypes fetches correct value ok 39 - addTypes returns number of items in list ok 40 - addTypes adds correct value ok 41 - setTypes throws exception with non-array argument ok 42 - setTypes throws exception with bad argument array ok 43 - addTypes throws exception with no arguments ok 44 - addTypes throws exception with bad array ok 45 - setTypes accepts empty array ref ok 46 - getTypes throws exception with argument ok 47 - setTypes throws exception with no argument ok 48 - setTypes throws exception with too many argument ok 49 - setTypes accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - types->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - types->self() is a valid Bio::MAGE::Association::End ok 55 - descriptions set in new() ok 56 - setDescriptions returns correct value ok 57 - getDescriptions fetches correct value ok 58 - addDescriptions returns number of items in list ok 59 - addDescriptions adds correct value ok 60 - setDescriptions throws exception with non-array argument ok 61 - setDescriptions throws exception with bad argument array ok 62 - addDescriptions throws exception with no arguments ok 63 - addDescriptions throws exception with bad array ok 64 - setDescriptions accepts empty array ref ok 65 - getDescriptions throws exception with argument ok 66 - setDescriptions throws exception with no argument ok 67 - setDescriptions throws exception with too many argument ok 68 - setDescriptions accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - descriptions->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - descriptions->self() is a valid Bio::MAGE::Association::End ok 74 - auditTrail set in new() ok 75 - setAuditTrail returns correct value ok 76 - getAuditTrail fetches correct value ok 77 - addAuditTrail returns number of items in list ok 78 - addAuditTrail adds correct value ok 79 - setAuditTrail throws exception with non-array argument ok 80 - setAuditTrail throws exception with bad argument array ok 81 - addAuditTrail throws exception with no arguments ok 82 - addAuditTrail throws exception with bad array ok 83 - setAuditTrail accepts empty array ref ok 84 - getAuditTrail throws exception with argument ok 85 - setAuditTrail throws exception with no argument ok 86 - setAuditTrail throws exception with too many argument ok 87 - setAuditTrail accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 94 - setSecurity returns value ok 95 - getSecurity fetches correct value ok 96 - setSecurity throws exception with bad argument ok 97 - getSecurity throws exception with argument ok 98 - setSecurity throws exception with no argument ok 99 - setSecurity throws exception with too many argument ok 100 - setSecurity accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - security->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - security->self() is a valid Bio::MAGE::Association::End ok 106 - propertySets set in new() ok 107 - setPropertySets returns correct value ok 108 - getPropertySets fetches correct value ok 109 - addPropertySets returns number of items in list ok 110 - addPropertySets adds correct value ok 111 - setPropertySets throws exception with non-array argument ok 112 - setPropertySets throws exception with bad argument array ok 113 - addPropertySets throws exception with no arguments ok 114 - addPropertySets throws exception with bad array ok 115 - setPropertySets accepts empty array ref ok 116 - getPropertySets throws exception with argument ok 117 - setPropertySets throws exception with no argument ok 118 - setPropertySets throws exception with too many argument ok 119 - setPropertySets accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - propertySets->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - propertySets->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 126 - setSpecies returns value ok 127 - getSpecies fetches correct value ok 128 - setSpecies throws exception with bad argument ok 129 - getSpecies throws exception with argument ok 130 - setSpecies throws exception with no argument ok 131 - setSpecies throws exception with too many argument ok 132 - setSpecies accepts undef ok 133 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - species->other() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 137 - species->self() is a valid Bio::MAGE::Association::End ok 138 - An object of class 'Bio::MAGE::ArrayDesign::DesignElementGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok 139 - An object of class 'Bio::MAGE::ArrayDesign::ReporterGroup' isa 'Bio::MAGE::ArrayDesign::DesignElementGroup' ok t/ReporterPosition.t ............. 1..69 ok 1 - use Bio::MAGE::DesignElement::ReporterPosition; ok 2 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 3 - package ok 4 - class_name ok 5 - end new ok 6 - end getter/setter ok 7 - end getter throws exception with argument ok 8 - end setter throws exception with no argument ok 9 - end setter throws exception with too many argument ok 10 - end setter accepts undef ok 11 - start new ok 12 - start getter/setter ok 13 - start getter throws exception with argument ok 14 - start setter throws exception with no argument ok 15 - start setter throws exception with too many argument ok 16 - start setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::Reporter' isa 'Bio::MAGE::DesignElement::Reporter' ok 37 - setReporter returns value ok 38 - getReporter fetches correct value ok 39 - setReporter throws exception with bad argument ok 40 - getReporter throws exception with argument ok 41 - setReporter throws exception with no argument ok 42 - setReporter throws exception with too many argument ok 43 - setReporter accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - reporter->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - reporter->self() is a valid Bio::MAGE::Association::End ok 49 - mismatchInformation set in new() ok 50 - setMismatchInformation returns correct value ok 51 - getMismatchInformation fetches correct value ok 52 - addMismatchInformation returns number of items in list ok 53 - addMismatchInformation adds correct value ok 54 - setMismatchInformation throws exception with non-array argument ok 55 - setMismatchInformation throws exception with bad argument array ok 56 - addMismatchInformation throws exception with no arguments ok 57 - addMismatchInformation throws exception with bad array ok 58 - setMismatchInformation accepts empty array ref ok 59 - getMismatchInformation throws exception with argument ok 60 - setMismatchInformation throws exception with no argument ok 61 - setMismatchInformation throws exception with too many argument ok 62 - setMismatchInformation accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - mismatchInformation->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - mismatchInformation->self() is a valid Bio::MAGE::Association::End ok 68 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 69 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok t/Security.t ..................... 1..126 ok 1 - use Bio::MAGE::AuditAndSecurity::Security; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - owner set in new() ok 18 - setOwner returns correct value ok 19 - getOwner fetches correct value ok 20 - addOwner returns number of items in list ok 21 - addOwner adds correct value ok 22 - setOwner throws exception with non-array argument ok 23 - setOwner throws exception with bad argument array ok 24 - addOwner throws exception with no arguments ok 25 - addOwner throws exception with bad array ok 26 - setOwner accepts empty array ref ok 27 - getOwner throws exception with argument ok 28 - setOwner throws exception with no argument ok 29 - setOwner throws exception with too many argument ok 30 - setOwner accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - owner->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - owner->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - securityGroups set in new() ok 107 - setSecurityGroups returns correct value ok 108 - getSecurityGroups fetches correct value ok 109 - addSecurityGroups returns number of items in list ok 110 - addSecurityGroups adds correct value ok 111 - setSecurityGroups throws exception with non-array argument ok 112 - setSecurityGroups throws exception with bad argument array ok 113 - addSecurityGroups throws exception with no arguments ok 114 - addSecurityGroups throws exception with bad array ok 115 - setSecurityGroups accepts empty array ref ok 116 - getSecurityGroups throws exception with argument ok 117 - setSecurityGroups throws exception with no argument ok 118 - setSecurityGroups throws exception with too many argument ok 119 - setSecurityGroups accepts undef ok 120 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 121 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 122 - securityGroups->other() is a valid Bio::MAGE::Association::End ok 123 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 124 - securityGroups->self() is a valid Bio::MAGE::Association::End ok 125 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 126 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::Identifiable' ok t/SecurityGroup.t ................ 1..107 ok 1 - use Bio::MAGE::AuditAndSecurity::SecurityGroup; ok 2 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::AuditAndSecurity::SecurityGroup' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - members set in new() ok 18 - setMembers returns correct value ok 19 - getMembers fetches correct value ok 20 - addMembers returns number of items in list ok 21 - addMembers adds correct value ok 22 - setMembers throws exception with non-array argument ok 23 - setMembers throws exception with bad argument array ok 24 - addMembers throws exception with no arguments ok 25 - addMembers throws exception with bad array ok 26 - setMembers accepts empty array ref ok 27 - getMembers throws exception with argument ok 28 - setMembers throws exception with no argument ok 29 - setMembers throws exception with too many argument ok 30 - setMembers accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - members->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - members->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 56 - setSecurity returns value ok 57 - getSecurity fetches correct value ok 58 - setSecurity throws exception with bad argument ok 59 - getSecurity throws exception with argument ok 60 - setSecurity throws exception with no argument ok 61 - setSecurity throws exception with too many argument ok 62 - setSecurity accepts undef ok 63 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - security->other() is a valid Bio::MAGE::Association::End ok 66 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 67 - security->self() is a valid Bio::MAGE::Association::End ok 68 - auditTrail set in new() ok 69 - setAuditTrail returns correct value ok 70 - getAuditTrail fetches correct value ok 71 - addAuditTrail returns number of items in list ok 72 - addAuditTrail adds correct value ok 73 - setAuditTrail throws exception with non-array argument ok 74 - setAuditTrail throws exception with bad argument array ok 75 - addAuditTrail throws exception with no arguments ok 76 - addAuditTrail throws exception with bad array ok 77 - setAuditTrail accepts empty array ref ok 78 - getAuditTrail throws exception with argument ok 79 - setAuditTrail throws exception with no argument ok 80 - setAuditTrail throws exception with too many argument ok 81 - setAuditTrail accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 107 - An object of class 'Bio::MAGE::AuditAndSecurity::SecurityGroup' isa 'Bio::MAGE::Identifiable' ok t/SeqFeature.t ................... 1..107 ok 1 - use Bio::MAGE::BioSequence::SeqFeature; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::BioSequence::SeqFeature' ok 3 - package ok 4 - class_name ok 5 - basis new ok 6 - basis getter/setter ok 7 - basis getter throws exception with argument ok 8 - basis setter throws exception with no argument ok 9 - basis setter throws exception with too many argument ok 10 - basis setter accepts undef ok 11 - basis setter throws exception with bad argument ok 12 - basis accepts experimental ok 13 - basis accepts computational ok 14 - basis accepts both ok 15 - basis accepts unknown ok 16 - basis accepts NA ok 17 - regions set in new() ok 18 - setRegions returns correct value ok 19 - getRegions fetches correct value ok 20 - addRegions returns number of items in list ok 21 - addRegions adds correct value ok 22 - setRegions throws exception with non-array argument ok 23 - setRegions throws exception with bad argument array ok 24 - addRegions throws exception with no arguments ok 25 - addRegions throws exception with bad array ok 26 - setRegions accepts empty array ref ok 27 - getRegions throws exception with argument ok 28 - setRegions throws exception with no argument ok 29 - setRegions throws exception with too many argument ok 30 - setRegions accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - regions->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - regions->self() is a valid Bio::MAGE::Association::End ok 36 - descriptions set in new() ok 37 - setDescriptions returns correct value ok 38 - getDescriptions fetches correct value ok 39 - addDescriptions returns number of items in list ok 40 - addDescriptions adds correct value ok 41 - setDescriptions throws exception with non-array argument ok 42 - setDescriptions throws exception with bad argument array ok 43 - addDescriptions throws exception with no arguments ok 44 - addDescriptions throws exception with bad array ok 45 - setDescriptions accepts empty array ref ok 46 - getDescriptions throws exception with argument ok 47 - setDescriptions throws exception with no argument ok 48 - setDescriptions throws exception with too many argument ok 49 - setDescriptions accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - descriptions->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - descriptions->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - propertySets set in new() ok 88 - setPropertySets returns correct value ok 89 - getPropertySets fetches correct value ok 90 - addPropertySets returns number of items in list ok 91 - addPropertySets adds correct value ok 92 - setPropertySets throws exception with non-array argument ok 93 - setPropertySets throws exception with bad argument array ok 94 - addPropertySets throws exception with no arguments ok 95 - addPropertySets throws exception with bad array ok 96 - setPropertySets accepts empty array ref ok 97 - getPropertySets throws exception with argument ok 98 - setPropertySets throws exception with no argument ok 99 - setPropertySets throws exception with too many argument ok 100 - setPropertySets accepts undef ok 101 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 102 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 103 - propertySets->other() is a valid Bio::MAGE::Association::End ok 104 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 105 - propertySets->self() is a valid Bio::MAGE::Association::End ok 106 - An object of class 'Bio::MAGE::Describable' isa 'Bio::MAGE::Describable' ok 107 - An object of class 'Bio::MAGE::BioSequence::SeqFeature' isa 'Bio::MAGE::Describable' ok t/SeqFeatureLocation.t ........... 1..63 ok 1 - use Bio::MAGE::BioSequence::SeqFeatureLocation; ok 2 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::BioSequence::SeqFeatureLocation' ok 3 - package ok 4 - class_name ok 5 - strandType new ok 6 - strandType getter/setter ok 7 - strandType getter throws exception with argument ok 8 - strandType setter throws exception with no argument ok 9 - strandType setter throws exception with too many argument ok 10 - strandType setter accepts undef ok 11 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 12 - setCoordinate returns value ok 13 - getCoordinate fetches correct value ok 14 - setCoordinate throws exception with bad argument ok 15 - getCoordinate throws exception with argument ok 16 - setCoordinate throws exception with no argument ok 17 - setCoordinate throws exception with too many argument ok 18 - setCoordinate accepts undef ok 19 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 20 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 21 - coordinate->other() is a valid Bio::MAGE::Association::End ok 22 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 23 - coordinate->self() is a valid Bio::MAGE::Association::End ok 24 - subregions set in new() ok 25 - setSubregions returns correct value ok 26 - getSubregions fetches correct value ok 27 - addSubregions returns number of items in list ok 28 - addSubregions adds correct value ok 29 - setSubregions throws exception with non-array argument ok 30 - setSubregions throws exception with bad argument array ok 31 - addSubregions throws exception with no arguments ok 32 - addSubregions throws exception with bad array ok 33 - setSubregions accepts empty array ref ok 34 - getSubregions throws exception with argument ok 35 - setSubregions throws exception with no argument ok 36 - setSubregions throws exception with too many argument ok 37 - setSubregions accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - subregions->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - subregions->self() is a valid Bio::MAGE::Association::End ok 43 - propertySets set in new() ok 44 - setPropertySets returns correct value ok 45 - getPropertySets fetches correct value ok 46 - addPropertySets returns number of items in list ok 47 - addPropertySets adds correct value ok 48 - setPropertySets throws exception with non-array argument ok 49 - setPropertySets throws exception with bad argument array ok 50 - addPropertySets throws exception with no arguments ok 51 - addPropertySets throws exception with bad array ok 52 - setPropertySets accepts empty array ref ok 53 - getPropertySets throws exception with argument ok 54 - setPropertySets throws exception with no argument ok 55 - setPropertySets throws exception with too many argument ok 56 - setPropertySets accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - propertySets->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - propertySets->self() is a valid Bio::MAGE::Association::End ok 62 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 63 - An object of class 'Bio::MAGE::BioSequence::SeqFeatureLocation' isa 'Bio::MAGE::Extendable' ok t/SequencePosition.t ............. 1..41 ok 1 - use Bio::MAGE::BioSequence::SequencePosition; ok 2 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 3 - package ok 4 - class_name ok 5 - start new ok 6 - start getter/setter ok 7 - start getter throws exception with argument ok 8 - start setter throws exception with no argument ok 9 - start setter throws exception with too many argument ok 10 - start setter accepts undef ok 11 - end new ok 12 - end getter/setter ok 13 - end getter throws exception with argument ok 14 - end setter throws exception with no argument ok 15 - end setter throws exception with too many argument ok 16 - end setter accepts undef ok 17 - propertySets set in new() ok 18 - setPropertySets returns correct value ok 19 - getPropertySets fetches correct value ok 20 - addPropertySets returns number of items in list ok 21 - addPropertySets adds correct value ok 22 - setPropertySets throws exception with non-array argument ok 23 - setPropertySets throws exception with bad argument array ok 24 - addPropertySets throws exception with no arguments ok 25 - addPropertySets throws exception with bad array ok 26 - setPropertySets accepts empty array ref ok 27 - getPropertySets throws exception with argument ok 28 - setPropertySets throws exception with no argument ok 29 - setPropertySets throws exception with too many argument ok 30 - setPropertySets accepts undef ok 31 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 32 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 33 - propertySets->other() is a valid Bio::MAGE::Association::End ok 34 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 35 - propertySets->self() is a valid Bio::MAGE::Association::End ok 36 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::DesignElement::ReporterPosition' ok 37 - An object of class 'Bio::MAGE::DesignElement::ReporterPosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 38 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::DesignElement::CompositePosition' ok 39 - An object of class 'Bio::MAGE::DesignElement::CompositePosition' isa 'Bio::MAGE::BioSequence::SequencePosition' ok 40 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 41 - An object of class 'Bio::MAGE::BioSequence::SequencePosition' isa 'Bio::MAGE::Extendable' ok t/Software.t ..................... 1..177 ok 1 - use Bio::MAGE::Protocol::Software; ok 2 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - URI new ok 12 - URI getter/setter ok 13 - URI getter throws exception with argument ok 14 - URI setter throws exception with no argument ok 15 - URI setter throws exception with too many argument ok 16 - URI setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - softwareManufacturers set in new() ok 24 - setSoftwareManufacturers returns correct value ok 25 - getSoftwareManufacturers fetches correct value ok 26 - addSoftwareManufacturers returns number of items in list ok 27 - addSoftwareManufacturers adds correct value ok 28 - setSoftwareManufacturers throws exception with non-array argument ok 29 - setSoftwareManufacturers throws exception with bad argument array ok 30 - addSoftwareManufacturers throws exception with no arguments ok 31 - addSoftwareManufacturers throws exception with bad array ok 32 - setSoftwareManufacturers accepts empty array ref ok 33 - getSoftwareManufacturers throws exception with argument ok 34 - setSoftwareManufacturers throws exception with no argument ok 35 - setSoftwareManufacturers throws exception with too many argument ok 36 - setSoftwareManufacturers accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - softwareManufacturers->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - softwareManufacturers->self() is a valid Bio::MAGE::Association::End ok 42 - parameterTypes set in new() ok 43 - setParameterTypes returns correct value ok 44 - getParameterTypes fetches correct value ok 45 - addParameterTypes returns number of items in list ok 46 - addParameterTypes adds correct value ok 47 - setParameterTypes throws exception with non-array argument ok 48 - setParameterTypes throws exception with bad argument array ok 49 - addParameterTypes throws exception with no arguments ok 50 - addParameterTypes throws exception with bad array ok 51 - setParameterTypes accepts empty array ref ok 52 - getParameterTypes throws exception with argument ok 53 - setParameterTypes throws exception with no argument ok 54 - setParameterTypes throws exception with too many argument ok 55 - setParameterTypes accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - parameterTypes->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - parameterTypes->self() is a valid Bio::MAGE::Association::End ok 61 - auditTrail set in new() ok 62 - setAuditTrail returns correct value ok 63 - getAuditTrail fetches correct value ok 64 - addAuditTrail returns number of items in list ok 65 - addAuditTrail adds correct value ok 66 - setAuditTrail throws exception with non-array argument ok 67 - setAuditTrail throws exception with bad argument array ok 68 - addAuditTrail throws exception with no arguments ok 69 - addAuditTrail throws exception with bad array ok 70 - setAuditTrail accepts empty array ref ok 71 - getAuditTrail throws exception with argument ok 72 - setAuditTrail throws exception with no argument ok 73 - setAuditTrail throws exception with too many argument ok 74 - setAuditTrail accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 80 - propertySets set in new() ok 81 - setPropertySets returns correct value ok 82 - getPropertySets fetches correct value ok 83 - addPropertySets returns number of items in list ok 84 - addPropertySets adds correct value ok 85 - setPropertySets throws exception with non-array argument ok 86 - setPropertySets throws exception with bad argument array ok 87 - addPropertySets throws exception with no arguments ok 88 - addPropertySets throws exception with bad array ok 89 - setPropertySets accepts empty array ref ok 90 - getPropertySets throws exception with argument ok 91 - setPropertySets throws exception with no argument ok 92 - setPropertySets throws exception with too many argument ok 93 - setPropertySets accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - propertySets->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - propertySets->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - softwares set in new() ok 119 - setSoftwares returns correct value ok 120 - getSoftwares fetches correct value ok 121 - addSoftwares returns number of items in list ok 122 - addSoftwares adds correct value ok 123 - setSoftwares throws exception with non-array argument ok 124 - setSoftwares throws exception with bad argument array ok 125 - addSoftwares throws exception with no arguments ok 126 - addSoftwares throws exception with bad array ok 127 - setSoftwares accepts empty array ref ok 128 - getSoftwares throws exception with argument ok 129 - setSoftwares throws exception with no argument ok 130 - setSoftwares throws exception with too many argument ok 131 - setSoftwares accepts undef ok 132 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 133 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 134 - softwares->other() is a valid Bio::MAGE::Association::End ok 135 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 136 - softwares->self() is a valid Bio::MAGE::Association::End ok 137 - An object of class 'Bio::MAGE::Protocol::Hardware' isa 'Bio::MAGE::Protocol::Hardware' ok 138 - setHardware returns value ok 139 - getHardware fetches correct value ok 140 - setHardware throws exception with bad argument ok 141 - getHardware throws exception with argument ok 142 - setHardware throws exception with no argument ok 143 - setHardware throws exception with too many argument ok 144 - setHardware accepts undef ok 145 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 146 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 147 - hardware->other() is a valid Bio::MAGE::Association::End ok 148 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 149 - hardware->self() is a valid Bio::MAGE::Association::End ok 150 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 151 - setSecurity returns value ok 152 - getSecurity fetches correct value ok 153 - setSecurity throws exception with bad argument ok 154 - getSecurity throws exception with argument ok 155 - setSecurity throws exception with no argument ok 156 - setSecurity throws exception with too many argument ok 157 - setSecurity accepts undef ok 158 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 159 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 160 - security->other() is a valid Bio::MAGE::Association::End ok 161 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 162 - security->self() is a valid Bio::MAGE::Association::End ok 163 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 164 - setType returns value ok 165 - getType fetches correct value ok 166 - setType throws exception with bad argument ok 167 - getType throws exception with argument ok 168 - setType throws exception with no argument ok 169 - setType throws exception with too many argument ok 170 - setType accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - type->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - type->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::Protocol::Parameterizable' isa 'Bio::MAGE::Protocol::Parameterizable' ok 177 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Parameterizable' ok t/SoftwareApplication.t .......... 1..120 ok 1 - use Bio::MAGE::Protocol::SoftwareApplication; ok 2 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::SoftwareApplication' ok 3 - package ok 4 - class_name ok 5 - releaseDate new ok 6 - releaseDate getter/setter ok 7 - releaseDate getter throws exception with argument ok 8 - releaseDate setter throws exception with no argument ok 9 - releaseDate setter throws exception with too many argument ok 10 - releaseDate setter accepts undef ok 11 - version new ok 12 - version getter/setter ok 13 - version getter throws exception with argument ok 14 - version setter throws exception with no argument ok 15 - version setter throws exception with too many argument ok 16 - version setter accepts undef ok 17 - An object of class 'Bio::MAGE::Protocol::Software' isa 'Bio::MAGE::Protocol::Software' ok 18 - setSoftware returns value ok 19 - getSoftware fetches correct value ok 20 - setSoftware throws exception with bad argument ok 21 - getSoftware throws exception with argument ok 22 - setSoftware throws exception with no argument ok 23 - setSoftware throws exception with too many argument ok 24 - setSoftware accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - software->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - software->self() is a valid Bio::MAGE::Association::End ok 30 - descriptions set in new() ok 31 - setDescriptions returns correct value ok 32 - getDescriptions fetches correct value ok 33 - addDescriptions returns number of items in list ok 34 - addDescriptions adds correct value ok 35 - setDescriptions throws exception with non-array argument ok 36 - setDescriptions throws exception with bad argument array ok 37 - addDescriptions throws exception with no arguments ok 38 - addDescriptions throws exception with bad array ok 39 - setDescriptions accepts empty array ref ok 40 - getDescriptions throws exception with argument ok 41 - setDescriptions throws exception with no argument ok 42 - setDescriptions throws exception with too many argument ok 43 - setDescriptions accepts undef ok 44 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 45 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 46 - descriptions->other() is a valid Bio::MAGE::Association::End ok 47 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 48 - descriptions->self() is a valid Bio::MAGE::Association::End ok 49 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 50 - setSecurity returns value ok 51 - getSecurity fetches correct value ok 52 - setSecurity throws exception with bad argument ok 53 - getSecurity throws exception with argument ok 54 - setSecurity throws exception with no argument ok 55 - setSecurity throws exception with too many argument ok 56 - setSecurity accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - security->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - security->self() is a valid Bio::MAGE::Association::End ok 62 - auditTrail set in new() ok 63 - setAuditTrail returns correct value ok 64 - getAuditTrail fetches correct value ok 65 - addAuditTrail returns number of items in list ok 66 - addAuditTrail adds correct value ok 67 - setAuditTrail throws exception with non-array argument ok 68 - setAuditTrail throws exception with bad argument array ok 69 - addAuditTrail throws exception with no arguments ok 70 - addAuditTrail throws exception with bad array ok 71 - setAuditTrail accepts empty array ref ok 72 - getAuditTrail throws exception with argument ok 73 - setAuditTrail throws exception with no argument ok 74 - setAuditTrail throws exception with too many argument ok 75 - setAuditTrail accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 81 - propertySets set in new() ok 82 - setPropertySets returns correct value ok 83 - getPropertySets fetches correct value ok 84 - addPropertySets returns number of items in list ok 85 - addPropertySets adds correct value ok 86 - setPropertySets throws exception with non-array argument ok 87 - setPropertySets throws exception with bad argument array ok 88 - addPropertySets throws exception with no arguments ok 89 - addPropertySets throws exception with bad array ok 90 - setPropertySets accepts empty array ref ok 91 - getPropertySets throws exception with argument ok 92 - setPropertySets throws exception with no argument ok 93 - setPropertySets throws exception with too many argument ok 94 - setPropertySets accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - propertySets->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - propertySets->self() is a valid Bio::MAGE::Association::End ok 100 - parameterValues set in new() ok 101 - setParameterValues returns correct value ok 102 - getParameterValues fetches correct value ok 103 - addParameterValues returns number of items in list ok 104 - addParameterValues adds correct value ok 105 - setParameterValues throws exception with non-array argument ok 106 - setParameterValues throws exception with bad argument array ok 107 - addParameterValues throws exception with no arguments ok 108 - addParameterValues throws exception with bad array ok 109 - setParameterValues accepts empty array ref ok 110 - getParameterValues throws exception with argument ok 111 - setParameterValues throws exception with no argument ok 112 - setParameterValues throws exception with too many argument ok 113 - setParameterValues accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - parameterValues->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - parameterValues->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::Protocol::ParameterizableApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok 120 - An object of class 'Bio::MAGE::Protocol::SoftwareApplication' isa 'Bio::MAGE::Protocol::ParameterizableApplication' ok t/SpecializedQuantitationType.t .. 1..171 ok 1 - use Bio::MAGE::QuantitationType::SpecializedQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 171 - An object of class 'Bio::MAGE::QuantitationType::SpecializedQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/StandardQuantitationType.t ..... 1..183 ok 1 - use Bio::MAGE::QuantitationType::StandardQuantitationType; ok 2 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 3 - package ok 4 - class_name ok 5 - isBackground new ok 6 - isBackground getter/setter ok 7 - isBackground getter throws exception with argument ok 8 - isBackground setter throws exception with no argument ok 9 - isBackground setter throws exception with too many argument ok 10 - isBackground setter accepts undef ok 11 - identifier new ok 12 - identifier getter/setter ok 13 - identifier getter throws exception with argument ok 14 - identifier setter throws exception with no argument ok 15 - identifier setter throws exception with too many argument ok 16 - identifier setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - descriptions set in new() ok 24 - setDescriptions returns correct value ok 25 - getDescriptions fetches correct value ok 26 - addDescriptions returns number of items in list ok 27 - addDescriptions adds correct value ok 28 - setDescriptions throws exception with non-array argument ok 29 - setDescriptions throws exception with bad argument array ok 30 - addDescriptions throws exception with no arguments ok 31 - addDescriptions throws exception with bad array ok 32 - setDescriptions accepts empty array ref ok 33 - getDescriptions throws exception with argument ok 34 - setDescriptions throws exception with no argument ok 35 - setDescriptions throws exception with too many argument ok 36 - setDescriptions accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - descriptions->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - descriptions->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 43 - setDataType returns value ok 44 - getDataType fetches correct value ok 45 - setDataType throws exception with bad argument ok 46 - getDataType throws exception with argument ok 47 - setDataType throws exception with no argument ok 48 - setDataType throws exception with too many argument ok 49 - setDataType accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - dataType->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - dataType->self() is a valid Bio::MAGE::Association::End ok 55 - auditTrail set in new() ok 56 - setAuditTrail returns correct value ok 57 - getAuditTrail fetches correct value ok 58 - addAuditTrail returns number of items in list ok 59 - addAuditTrail adds correct value ok 60 - setAuditTrail throws exception with non-array argument ok 61 - setAuditTrail throws exception with bad argument array ok 62 - addAuditTrail throws exception with no arguments ok 63 - addAuditTrail throws exception with bad array ok 64 - setAuditTrail accepts empty array ref ok 65 - getAuditTrail throws exception with argument ok 66 - setAuditTrail throws exception with no argument ok 67 - setAuditTrail throws exception with too many argument ok 68 - setAuditTrail accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 74 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 75 - setSecurity returns value ok 76 - getSecurity fetches correct value ok 77 - setSecurity throws exception with bad argument ok 78 - getSecurity throws exception with argument ok 79 - setSecurity throws exception with no argument ok 80 - setSecurity throws exception with too many argument ok 81 - setSecurity accepts undef ok 82 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - security->other() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 86 - security->self() is a valid Bio::MAGE::Association::End ok 87 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 88 - setScale returns value ok 89 - getScale fetches correct value ok 90 - setScale throws exception with bad argument ok 91 - getScale throws exception with argument ok 92 - setScale throws exception with no argument ok 93 - setScale throws exception with too many argument ok 94 - setScale accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - scale->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - scale->self() is a valid Bio::MAGE::Association::End ok 100 - propertySets set in new() ok 101 - setPropertySets returns correct value ok 102 - getPropertySets fetches correct value ok 103 - addPropertySets returns number of items in list ok 104 - addPropertySets adds correct value ok 105 - setPropertySets throws exception with non-array argument ok 106 - setPropertySets throws exception with bad argument array ok 107 - addPropertySets throws exception with no arguments ok 108 - addPropertySets throws exception with bad array ok 109 - setPropertySets accepts empty array ref ok 110 - getPropertySets throws exception with argument ok 111 - setPropertySets throws exception with no argument ok 112 - setPropertySets throws exception with too many argument ok 113 - setPropertySets accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - propertySets->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - propertySets->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::BioAssay::Channel' isa 'Bio::MAGE::BioAssay::Channel' ok 120 - setChannel returns value ok 121 - getChannel fetches correct value ok 122 - setChannel throws exception with bad argument ok 123 - getChannel throws exception with argument ok 124 - setChannel throws exception with no argument ok 125 - setChannel throws exception with too many argument ok 126 - setChannel accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - channel->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - channel->self() is a valid Bio::MAGE::Association::End ok 132 - confidenceIndicators set in new() ok 133 - setConfidenceIndicators returns correct value ok 134 - getConfidenceIndicators fetches correct value ok 135 - addConfidenceIndicators returns number of items in list ok 136 - addConfidenceIndicators adds correct value ok 137 - setConfidenceIndicators throws exception with non-array argument ok 138 - setConfidenceIndicators throws exception with bad argument array ok 139 - addConfidenceIndicators throws exception with no arguments ok 140 - addConfidenceIndicators throws exception with bad array ok 141 - setConfidenceIndicators accepts empty array ref ok 142 - getConfidenceIndicators throws exception with argument ok 143 - setConfidenceIndicators throws exception with no argument ok 144 - setConfidenceIndicators throws exception with too many argument ok 145 - setConfidenceIndicators accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - confidenceIndicators->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - confidenceIndicators->self() is a valid Bio::MAGE::Association::End ok 151 - quantitationTypeMaps set in new() ok 152 - setQuantitationTypeMaps returns correct value ok 153 - getQuantitationTypeMaps fetches correct value ok 154 - addQuantitationTypeMaps returns number of items in list ok 155 - addQuantitationTypeMaps adds correct value ok 156 - setQuantitationTypeMaps throws exception with non-array argument ok 157 - setQuantitationTypeMaps throws exception with bad argument array ok 158 - addQuantitationTypeMaps throws exception with no arguments ok 159 - addQuantitationTypeMaps throws exception with bad array ok 160 - setQuantitationTypeMaps accepts empty array ref ok 161 - getQuantitationTypeMaps throws exception with argument ok 162 - setQuantitationTypeMaps throws exception with no argument ok 163 - setQuantitationTypeMaps throws exception with too many argument ok 164 - setQuantitationTypeMaps accepts undef ok 165 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 166 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 167 - quantitationTypeMaps->other() is a valid Bio::MAGE::Association::End ok 168 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 169 - quantitationTypeMaps->self() is a valid Bio::MAGE::Association::End ok 170 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::DerivedSignal' ok 171 - An object of class 'Bio::MAGE::QuantitationType::DerivedSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 172 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::MeasuredSignal' ok 173 - An object of class 'Bio::MAGE::QuantitationType::MeasuredSignal' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 174 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::Ratio' ok 175 - An object of class 'Bio::MAGE::QuantitationType::Ratio' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 176 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::ConfidenceIndicator' ok 177 - An object of class 'Bio::MAGE::QuantitationType::ConfidenceIndicator' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 178 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::PresentAbsent' ok 179 - An object of class 'Bio::MAGE::QuantitationType::PresentAbsent' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 180 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::Failed' ok 181 - An object of class 'Bio::MAGE::QuantitationType::Failed' isa 'Bio::MAGE::QuantitationType::StandardQuantitationType' ok 182 - An object of class 'Bio::MAGE::QuantitationType::QuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok 183 - An object of class 'Bio::MAGE::QuantitationType::StandardQuantitationType' isa 'Bio::MAGE::QuantitationType::QuantitationType' ok t/TemperatureUnit.t .............. 1..41 ok 1 - use Bio::MAGE::Measurement::TemperatureUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts degree_C ok 19 - unitNameCV accepts degree_F ok 20 - unitNameCV accepts K ok 21 - propertySets set in new() ok 22 - setPropertySets returns correct value ok 23 - getPropertySets fetches correct value ok 24 - addPropertySets returns number of items in list ok 25 - addPropertySets adds correct value ok 26 - setPropertySets throws exception with non-array argument ok 27 - setPropertySets throws exception with bad argument array ok 28 - addPropertySets throws exception with no arguments ok 29 - addPropertySets throws exception with bad array ok 30 - setPropertySets accepts empty array ref ok 31 - getPropertySets throws exception with argument ok 32 - setPropertySets throws exception with no argument ok 33 - setPropertySets throws exception with too many argument ok 34 - setPropertySets accepts undef ok 35 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 36 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 37 - propertySets->other() is a valid Bio::MAGE::Association::End ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - propertySets->self() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 41 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/TimeUnit.t ..................... 1..47 ok 1 - use Bio::MAGE::Measurement::TimeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts years ok 19 - unitNameCV accepts months ok 20 - unitNameCV accepts weeks ok 21 - unitNameCV accepts d ok 22 - unitNameCV accepts h ok 23 - unitNameCV accepts m ok 24 - unitNameCV accepts s ok 25 - unitNameCV accepts us ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Transformation.t ............... 1..178 ok 1 - use Bio::MAGE::BioAssayData::Transformation; ok 2 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioAssayData::Transformation' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - name new ok 12 - name getter/setter ok 13 - name getter throws exception with argument ok 14 - name setter throws exception with no argument ok 15 - name setter throws exception with too many argument ok 16 - name setter accepts undef ok 17 - An object of class 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' isa 'Bio::MAGE::BioAssayData::QuantitationTypeMapping' ok 18 - setQuantitationTypeMapping returns value ok 19 - getQuantitationTypeMapping fetches correct value ok 20 - setQuantitationTypeMapping throws exception with bad argument ok 21 - getQuantitationTypeMapping throws exception with argument ok 22 - setQuantitationTypeMapping throws exception with no argument ok 23 - setQuantitationTypeMapping throws exception with too many argument ok 24 - setQuantitationTypeMapping accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - quantitationTypeMapping->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - quantitationTypeMapping->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::BioAssayData::DesignElementMapping' isa 'Bio::MAGE::BioAssayData::DesignElementMapping' ok 31 - setDesignElementMapping returns value ok 32 - getDesignElementMapping fetches correct value ok 33 - setDesignElementMapping throws exception with bad argument ok 34 - getDesignElementMapping throws exception with argument ok 35 - setDesignElementMapping throws exception with no argument ok 36 - setDesignElementMapping throws exception with too many argument ok 37 - setDesignElementMapping accepts undef ok 38 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 39 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 40 - designElementMapping->other() is a valid Bio::MAGE::Association::End ok 41 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 42 - designElementMapping->self() is a valid Bio::MAGE::Association::End ok 43 - auditTrail set in new() ok 44 - setAuditTrail returns correct value ok 45 - getAuditTrail fetches correct value ok 46 - addAuditTrail returns number of items in list ok 47 - addAuditTrail adds correct value ok 48 - setAuditTrail throws exception with non-array argument ok 49 - setAuditTrail throws exception with bad argument array ok 50 - addAuditTrail throws exception with no arguments ok 51 - addAuditTrail throws exception with bad array ok 52 - setAuditTrail accepts empty array ref ok 53 - getAuditTrail throws exception with argument ok 54 - setAuditTrail throws exception with no argument ok 55 - setAuditTrail throws exception with too many argument ok 56 - setAuditTrail accepts undef ok 57 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 58 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 59 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 60 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 61 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 62 - propertySets set in new() ok 63 - setPropertySets returns correct value ok 64 - getPropertySets fetches correct value ok 65 - addPropertySets returns number of items in list ok 66 - addPropertySets adds correct value ok 67 - setPropertySets throws exception with non-array argument ok 68 - setPropertySets throws exception with bad argument array ok 69 - addPropertySets throws exception with no arguments ok 70 - addPropertySets throws exception with bad array ok 71 - setPropertySets accepts empty array ref ok 72 - getPropertySets throws exception with argument ok 73 - setPropertySets throws exception with no argument ok 74 - setPropertySets throws exception with too many argument ok 75 - setPropertySets accepts undef ok 76 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 77 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 78 - propertySets->other() is a valid Bio::MAGE::Association::End ok 79 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 80 - propertySets->self() is a valid Bio::MAGE::Association::End ok 81 - protocolApplications set in new() ok 82 - setProtocolApplications returns correct value ok 83 - getProtocolApplications fetches correct value ok 84 - addProtocolApplications returns number of items in list ok 85 - addProtocolApplications adds correct value ok 86 - setProtocolApplications throws exception with non-array argument ok 87 - setProtocolApplications throws exception with bad argument array ok 88 - addProtocolApplications throws exception with no arguments ok 89 - addProtocolApplications throws exception with bad array ok 90 - setProtocolApplications accepts empty array ref ok 91 - getProtocolApplications throws exception with argument ok 92 - setProtocolApplications throws exception with no argument ok 93 - setProtocolApplications throws exception with too many argument ok 94 - setProtocolApplications accepts undef ok 95 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 98 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 99 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 100 - descriptions set in new() ok 101 - setDescriptions returns correct value ok 102 - getDescriptions fetches correct value ok 103 - addDescriptions returns number of items in list ok 104 - addDescriptions adds correct value ok 105 - setDescriptions throws exception with non-array argument ok 106 - setDescriptions throws exception with bad argument array ok 107 - addDescriptions throws exception with no arguments ok 108 - addDescriptions throws exception with bad array ok 109 - setDescriptions accepts empty array ref ok 110 - getDescriptions throws exception with argument ok 111 - setDescriptions throws exception with no argument ok 112 - setDescriptions throws exception with too many argument ok 113 - setDescriptions accepts undef ok 114 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - descriptions->other() is a valid Bio::MAGE::Association::End ok 117 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 118 - descriptions->self() is a valid Bio::MAGE::Association::End ok 119 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 120 - setSecurity returns value ok 121 - getSecurity fetches correct value ok 122 - setSecurity throws exception with bad argument ok 123 - getSecurity throws exception with argument ok 124 - setSecurity throws exception with no argument ok 125 - setSecurity throws exception with too many argument ok 126 - setSecurity accepts undef ok 127 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 128 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 129 - security->other() is a valid Bio::MAGE::Association::End ok 130 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 131 - security->self() is a valid Bio::MAGE::Association::End ok 132 - bioAssayDataSources set in new() ok 133 - setBioAssayDataSources returns correct value ok 134 - getBioAssayDataSources fetches correct value ok 135 - addBioAssayDataSources returns number of items in list ok 136 - addBioAssayDataSources adds correct value ok 137 - setBioAssayDataSources throws exception with non-array argument ok 138 - setBioAssayDataSources throws exception with bad argument array ok 139 - addBioAssayDataSources throws exception with no arguments ok 140 - addBioAssayDataSources throws exception with bad array ok 141 - setBioAssayDataSources accepts empty array ref ok 142 - getBioAssayDataSources throws exception with argument ok 143 - setBioAssayDataSources throws exception with no argument ok 144 - setBioAssayDataSources throws exception with too many argument ok 145 - setBioAssayDataSources accepts undef ok 146 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 147 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 148 - bioAssayDataSources->other() is a valid Bio::MAGE::Association::End ok 149 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 150 - bioAssayDataSources->self() is a valid Bio::MAGE::Association::End ok 151 - An object of class 'Bio::MAGE::BioAssayData::DerivedBioAssayData' isa 'Bio::MAGE::BioAssayData::DerivedBioAssayData' ok 152 - setDerivedBioAssayDataTarget returns value ok 153 - getDerivedBioAssayDataTarget fetches correct value ok 154 - setDerivedBioAssayDataTarget throws exception with bad argument ok 155 - getDerivedBioAssayDataTarget throws exception with argument ok 156 - setDerivedBioAssayDataTarget throws exception with no argument ok 157 - setDerivedBioAssayDataTarget throws exception with too many argument ok 158 - setDerivedBioAssayDataTarget accepts undef ok 159 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 160 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 161 - derivedBioAssayDataTarget->other() is a valid Bio::MAGE::Association::End ok 162 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 163 - derivedBioAssayDataTarget->self() is a valid Bio::MAGE::Association::End ok 164 - An object of class 'Bio::MAGE::BioAssayData::BioAssayMapping' isa 'Bio::MAGE::BioAssayData::BioAssayMapping' ok 165 - setBioAssayMapping returns value ok 166 - getBioAssayMapping fetches correct value ok 167 - setBioAssayMapping throws exception with bad argument ok 168 - getBioAssayMapping throws exception with argument ok 169 - setBioAssayMapping throws exception with no argument ok 170 - setBioAssayMapping throws exception with too many argument ok 171 - setBioAssayMapping accepts undef ok 172 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 173 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 174 - bioAssayMapping->other() is a valid Bio::MAGE::Association::End ok 175 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 176 - bioAssayMapping->self() is a valid Bio::MAGE::Association::End ok 177 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 178 - An object of class 'Bio::MAGE::BioAssayData::Transformation' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Treatment.t .................... 1..177 ok 1 - use Bio::MAGE::BioMaterial::Treatment; ok 2 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioMaterial::Treatment' ok 3 - package ok 4 - class_name ok 5 - identifier new ok 6 - identifier getter/setter ok 7 - identifier getter throws exception with argument ok 8 - identifier setter throws exception with no argument ok 9 - identifier setter throws exception with too many argument ok 10 - identifier setter accepts undef ok 11 - order new ok 12 - order getter/setter ok 13 - order getter throws exception with argument ok 14 - order setter throws exception with no argument ok 15 - order setter throws exception with too many argument ok 16 - order setter accepts undef ok 17 - name new ok 18 - name getter/setter ok 19 - name getter throws exception with argument ok 20 - name setter throws exception with no argument ok 21 - name setter throws exception with too many argument ok 22 - name setter accepts undef ok 23 - sourceBioMaterialMeasurements set in new() ok 24 - setSourceBioMaterialMeasurements returns correct value ok 25 - getSourceBioMaterialMeasurements fetches correct value ok 26 - addSourceBioMaterialMeasurements returns number of items in list ok 27 - addSourceBioMaterialMeasurements adds correct value ok 28 - setSourceBioMaterialMeasurements throws exception with non-array argument ok 29 - setSourceBioMaterialMeasurements throws exception with bad argument array ok 30 - addSourceBioMaterialMeasurements throws exception with no arguments ok 31 - addSourceBioMaterialMeasurements throws exception with bad array ok 32 - setSourceBioMaterialMeasurements accepts empty array ref ok 33 - getSourceBioMaterialMeasurements throws exception with argument ok 34 - setSourceBioMaterialMeasurements throws exception with no argument ok 35 - setSourceBioMaterialMeasurements throws exception with too many argument ok 36 - setSourceBioMaterialMeasurements accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - sourceBioMaterialMeasurements->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - sourceBioMaterialMeasurements->self() is a valid Bio::MAGE::Association::End ok 42 - auditTrail set in new() ok 43 - setAuditTrail returns correct value ok 44 - getAuditTrail fetches correct value ok 45 - addAuditTrail returns number of items in list ok 46 - addAuditTrail adds correct value ok 47 - setAuditTrail throws exception with non-array argument ok 48 - setAuditTrail throws exception with bad argument array ok 49 - addAuditTrail throws exception with no arguments ok 50 - addAuditTrail throws exception with bad array ok 51 - setAuditTrail accepts empty array ref ok 52 - getAuditTrail throws exception with argument ok 53 - setAuditTrail throws exception with no argument ok 54 - setAuditTrail throws exception with too many argument ok 55 - setAuditTrail accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 61 - propertySets set in new() ok 62 - setPropertySets returns correct value ok 63 - getPropertySets fetches correct value ok 64 - addPropertySets returns number of items in list ok 65 - addPropertySets adds correct value ok 66 - setPropertySets throws exception with non-array argument ok 67 - setPropertySets throws exception with bad argument array ok 68 - addPropertySets throws exception with no arguments ok 69 - addPropertySets throws exception with bad array ok 70 - setPropertySets accepts empty array ref ok 71 - getPropertySets throws exception with argument ok 72 - setPropertySets throws exception with no argument ok 73 - setPropertySets throws exception with too many argument ok 74 - setPropertySets accepts undef ok 75 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 76 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 77 - propertySets->other() is a valid Bio::MAGE::Association::End ok 78 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 79 - propertySets->self() is a valid Bio::MAGE::Association::End ok 80 - protocolApplications set in new() ok 81 - setProtocolApplications returns correct value ok 82 - getProtocolApplications fetches correct value ok 83 - addProtocolApplications returns number of items in list ok 84 - addProtocolApplications adds correct value ok 85 - setProtocolApplications throws exception with non-array argument ok 86 - setProtocolApplications throws exception with bad argument array ok 87 - addProtocolApplications throws exception with no arguments ok 88 - addProtocolApplications throws exception with bad array ok 89 - setProtocolApplications accepts empty array ref ok 90 - getProtocolApplications throws exception with argument ok 91 - setProtocolApplications throws exception with no argument ok 92 - setProtocolApplications throws exception with too many argument ok 93 - setProtocolApplications accepts undef ok 94 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 95 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 96 - protocolApplications->other() is a valid Bio::MAGE::Association::End ok 97 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 98 - protocolApplications->self() is a valid Bio::MAGE::Association::End ok 99 - descriptions set in new() ok 100 - setDescriptions returns correct value ok 101 - getDescriptions fetches correct value ok 102 - addDescriptions returns number of items in list ok 103 - addDescriptions adds correct value ok 104 - setDescriptions throws exception with non-array argument ok 105 - setDescriptions throws exception with bad argument array ok 106 - addDescriptions throws exception with no arguments ok 107 - addDescriptions throws exception with bad array ok 108 - setDescriptions accepts empty array ref ok 109 - getDescriptions throws exception with argument ok 110 - setDescriptions throws exception with no argument ok 111 - setDescriptions throws exception with too many argument ok 112 - setDescriptions accepts undef ok 113 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 114 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 115 - descriptions->other() is a valid Bio::MAGE::Association::End ok 116 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 117 - descriptions->self() is a valid Bio::MAGE::Association::End ok 118 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 119 - setSecurity returns value ok 120 - getSecurity fetches correct value ok 121 - setSecurity throws exception with bad argument ok 122 - getSecurity throws exception with argument ok 123 - setSecurity throws exception with no argument ok 124 - setSecurity throws exception with too many argument ok 125 - setSecurity accepts undef ok 126 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 127 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 128 - security->other() is a valid Bio::MAGE::Association::End ok 129 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 130 - security->self() is a valid Bio::MAGE::Association::End ok 131 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 132 - setAction returns value ok 133 - getAction fetches correct value ok 134 - setAction throws exception with bad argument ok 135 - getAction throws exception with argument ok 136 - setAction throws exception with no argument ok 137 - setAction throws exception with too many argument ok 138 - setAction accepts undef ok 139 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 140 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 141 - action->other() is a valid Bio::MAGE::Association::End ok 142 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 143 - action->self() is a valid Bio::MAGE::Association::End ok 144 - An object of class 'Bio::MAGE::Measurement::Measurement' isa 'Bio::MAGE::Measurement::Measurement' ok 145 - setActionMeasurement returns value ok 146 - getActionMeasurement fetches correct value ok 147 - setActionMeasurement throws exception with bad argument ok 148 - getActionMeasurement throws exception with argument ok 149 - setActionMeasurement throws exception with no argument ok 150 - setActionMeasurement throws exception with too many argument ok 151 - setActionMeasurement accepts undef ok 152 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 153 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 154 - actionMeasurement->other() is a valid Bio::MAGE::Association::End ok 155 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 156 - actionMeasurement->self() is a valid Bio::MAGE::Association::End ok 157 - compoundMeasurements set in new() ok 158 - setCompoundMeasurements returns correct value ok 159 - getCompoundMeasurements fetches correct value ok 160 - addCompoundMeasurements returns number of items in list ok 161 - addCompoundMeasurements adds correct value ok 162 - setCompoundMeasurements throws exception with non-array argument ok 163 - setCompoundMeasurements throws exception with bad argument array ok 164 - addCompoundMeasurements throws exception with no arguments ok 165 - addCompoundMeasurements throws exception with bad array ok 166 - setCompoundMeasurements accepts empty array ref ok 167 - getCompoundMeasurements throws exception with argument ok 168 - setCompoundMeasurements throws exception with no argument ok 169 - setCompoundMeasurements throws exception with too many argument ok 170 - setCompoundMeasurements accepts undef ok 171 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 172 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 173 - compoundMeasurements->other() is a valid Bio::MAGE::Association::End ok 174 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 175 - compoundMeasurements->self() is a valid Bio::MAGE::Association::End ok 176 - An object of class 'Bio::MAGE::BioEvent::BioEvent' isa 'Bio::MAGE::BioEvent::BioEvent' ok 177 - An object of class 'Bio::MAGE::BioMaterial::Treatment' isa 'Bio::MAGE::BioEvent::BioEvent' ok t/Unit.t ......................... 1..45 ok 1 - use Bio::MAGE::Measurement::Unit; ok 2 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - propertySets set in new() ok 12 - setPropertySets returns correct value ok 13 - getPropertySets fetches correct value ok 14 - addPropertySets returns number of items in list ok 15 - addPropertySets adds correct value ok 16 - setPropertySets throws exception with non-array argument ok 17 - setPropertySets throws exception with bad argument array ok 18 - addPropertySets throws exception with no arguments ok 19 - addPropertySets throws exception with bad array ok 20 - setPropertySets accepts empty array ref ok 21 - getPropertySets throws exception with argument ok 22 - setPropertySets throws exception with no argument ok 23 - setPropertySets throws exception with too many argument ok 24 - setPropertySets accepts undef ok 25 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 26 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 27 - propertySets->other() is a valid Bio::MAGE::Association::End ok 28 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 29 - propertySets->self() is a valid Bio::MAGE::Association::End ok 30 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::TimeUnit' ok 31 - An object of class 'Bio::MAGE::Measurement::TimeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 32 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 33 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::Unit' ok 34 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::TemperatureUnit' ok 35 - An object of class 'Bio::MAGE::Measurement::TemperatureUnit' isa 'Bio::MAGE::Measurement::Unit' ok 36 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::QuantityUnit' ok 37 - An object of class 'Bio::MAGE::Measurement::QuantityUnit' isa 'Bio::MAGE::Measurement::Unit' ok 38 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::MassUnit' ok 39 - An object of class 'Bio::MAGE::Measurement::MassUnit' isa 'Bio::MAGE::Measurement::Unit' ok 40 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 41 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok 42 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::ConcentrationUnit' ok 43 - An object of class 'Bio::MAGE::Measurement::ConcentrationUnit' isa 'Bio::MAGE::Measurement::Unit' ok 44 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 45 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Extendable' ok t/VolumeUnit.t ................... 1..47 ok 1 - use Bio::MAGE::Measurement::VolumeUnit; ok 2 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::VolumeUnit' ok 3 - package ok 4 - class_name ok 5 - unitName new ok 6 - unitName getter/setter ok 7 - unitName getter throws exception with argument ok 8 - unitName setter throws exception with no argument ok 9 - unitName setter throws exception with too many argument ok 10 - unitName setter accepts undef ok 11 - unitNameCV new ok 12 - unitNameCV getter/setter ok 13 - unitNameCV getter throws exception with argument ok 14 - unitNameCV setter throws exception with no argument ok 15 - unitNameCV setter throws exception with too many argument ok 16 - unitNameCV setter accepts undef ok 17 - unitNameCV setter throws exception with bad argument ok 18 - unitNameCV accepts mL ok 19 - unitNameCV accepts cc ok 20 - unitNameCV accepts dL ok 21 - unitNameCV accepts L ok 22 - unitNameCV accepts uL ok 23 - unitNameCV accepts nL ok 24 - unitNameCV accepts pL ok 25 - unitNameCV accepts fL ok 26 - unitNameCV accepts other ok 27 - propertySets set in new() ok 28 - setPropertySets returns correct value ok 29 - getPropertySets fetches correct value ok 30 - addPropertySets returns number of items in list ok 31 - addPropertySets adds correct value ok 32 - setPropertySets throws exception with non-array argument ok 33 - setPropertySets throws exception with bad argument array ok 34 - addPropertySets throws exception with no arguments ok 35 - addPropertySets throws exception with bad array ok 36 - setPropertySets accepts empty array ref ok 37 - getPropertySets throws exception with argument ok 38 - setPropertySets throws exception with no argument ok 39 - setPropertySets throws exception with too many argument ok 40 - setPropertySets accepts undef ok 41 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - propertySets->other() is a valid Bio::MAGE::Association::End ok 44 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 45 - propertySets->self() is a valid Bio::MAGE::Association::End ok 46 - An object of class 'Bio::MAGE::Measurement::Unit' isa 'Bio::MAGE::Measurement::Unit' ok 47 - An object of class 'Bio::MAGE::Measurement::VolumeUnit' isa 'Bio::MAGE::Measurement::Unit' ok t/Zone.t ......................... 1..137 ok 1 - use Bio::MAGE::ArrayDesign::Zone; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 3 - package ok 4 - class_name ok 5 - lowerRightY new ok 6 - lowerRightY getter/setter ok 7 - lowerRightY getter throws exception with argument ok 8 - lowerRightY setter throws exception with no argument ok 9 - lowerRightY setter throws exception with too many argument ok 10 - lowerRightY setter accepts undef ok 11 - lowerRightX new ok 12 - lowerRightX getter/setter ok 13 - lowerRightX getter throws exception with argument ok 14 - lowerRightX setter throws exception with no argument ok 15 - lowerRightX setter throws exception with too many argument ok 16 - lowerRightX setter accepts undef ok 17 - upperLeftX new ok 18 - upperLeftX getter/setter ok 19 - upperLeftX getter throws exception with argument ok 20 - upperLeftX setter throws exception with no argument ok 21 - upperLeftX setter throws exception with too many argument ok 22 - upperLeftX setter accepts undef ok 23 - name new ok 24 - name getter/setter ok 25 - name getter throws exception with argument ok 26 - name setter throws exception with no argument ok 27 - name setter throws exception with too many argument ok 28 - name setter accepts undef ok 29 - upperLeftY new ok 30 - upperLeftY getter/setter ok 31 - upperLeftY getter throws exception with argument ok 32 - upperLeftY setter throws exception with no argument ok 33 - upperLeftY setter throws exception with too many argument ok 34 - upperLeftY setter accepts undef ok 35 - identifier new ok 36 - identifier getter/setter ok 37 - identifier getter throws exception with argument ok 38 - identifier setter throws exception with no argument ok 39 - identifier setter throws exception with too many argument ok 40 - identifier setter accepts undef ok 41 - row new ok 42 - row getter/setter ok 43 - row getter throws exception with argument ok 44 - row setter throws exception with no argument ok 45 - row setter throws exception with too many argument ok 46 - row setter accepts undef ok 47 - column new ok 48 - column getter/setter ok 49 - column getter throws exception with argument ok 50 - column setter throws exception with no argument ok 51 - column setter throws exception with too many argument ok 52 - column setter accepts undef ok 53 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 54 - setDistanceUnit returns value ok 55 - getDistanceUnit fetches correct value ok 56 - setDistanceUnit throws exception with bad argument ok 57 - getDistanceUnit throws exception with argument ok 58 - setDistanceUnit throws exception with no argument ok 59 - setDistanceUnit throws exception with too many argument ok 60 - setDistanceUnit accepts undef ok 61 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 62 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 63 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 64 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 65 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 66 - descriptions set in new() ok 67 - setDescriptions returns correct value ok 68 - getDescriptions fetches correct value ok 69 - addDescriptions returns number of items in list ok 70 - addDescriptions adds correct value ok 71 - setDescriptions throws exception with non-array argument ok 72 - setDescriptions throws exception with bad argument array ok 73 - addDescriptions throws exception with no arguments ok 74 - addDescriptions throws exception with bad array ok 75 - setDescriptions accepts empty array ref ok 76 - getDescriptions throws exception with argument ok 77 - setDescriptions throws exception with no argument ok 78 - setDescriptions throws exception with too many argument ok 79 - setDescriptions accepts undef ok 80 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 81 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 82 - descriptions->other() is a valid Bio::MAGE::Association::End ok 83 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 84 - descriptions->self() is a valid Bio::MAGE::Association::End ok 85 - An object of class 'Bio::MAGE::AuditAndSecurity::Security' isa 'Bio::MAGE::AuditAndSecurity::Security' ok 86 - setSecurity returns value ok 87 - getSecurity fetches correct value ok 88 - setSecurity throws exception with bad argument ok 89 - getSecurity throws exception with argument ok 90 - setSecurity throws exception with no argument ok 91 - setSecurity throws exception with too many argument ok 92 - setSecurity accepts undef ok 93 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 94 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 95 - security->other() is a valid Bio::MAGE::Association::End ok 96 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 97 - security->self() is a valid Bio::MAGE::Association::End ok 98 - auditTrail set in new() ok 99 - setAuditTrail returns correct value ok 100 - getAuditTrail fetches correct value ok 101 - addAuditTrail returns number of items in list ok 102 - addAuditTrail adds correct value ok 103 - setAuditTrail throws exception with non-array argument ok 104 - setAuditTrail throws exception with bad argument array ok 105 - addAuditTrail throws exception with no arguments ok 106 - addAuditTrail throws exception with bad array ok 107 - setAuditTrail accepts empty array ref ok 108 - getAuditTrail throws exception with argument ok 109 - setAuditTrail throws exception with no argument ok 110 - setAuditTrail throws exception with too many argument ok 111 - setAuditTrail accepts undef ok 112 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 113 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 114 - auditTrail->other() is a valid Bio::MAGE::Association::End ok 115 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 116 - auditTrail->self() is a valid Bio::MAGE::Association::End ok 117 - propertySets set in new() ok 118 - setPropertySets returns correct value ok 119 - getPropertySets fetches correct value ok 120 - addPropertySets returns number of items in list ok 121 - addPropertySets adds correct value ok 122 - setPropertySets throws exception with non-array argument ok 123 - setPropertySets throws exception with bad argument array ok 124 - addPropertySets throws exception with no arguments ok 125 - addPropertySets throws exception with bad array ok 126 - setPropertySets accepts empty array ref ok 127 - getPropertySets throws exception with argument ok 128 - setPropertySets throws exception with no argument ok 129 - setPropertySets throws exception with too many argument ok 130 - setPropertySets accepts undef ok 131 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 132 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 133 - propertySets->other() is a valid Bio::MAGE::Association::End ok 134 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 135 - propertySets->self() is a valid Bio::MAGE::Association::End ok 136 - An object of class 'Bio::MAGE::Identifiable' isa 'Bio::MAGE::Identifiable' ok 137 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::Identifiable' ok t/ZoneDefect.t ................... 1..64 ok 1 - use Bio::MAGE::Array::ZoneDefect; ok 2 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Array::ZoneDefect' ok 3 - package ok 4 - class_name ok 5 - An object of class 'Bio::MAGE::Array::PositionDelta' isa 'Bio::MAGE::Array::PositionDelta' ok 6 - setPositionDelta returns value ok 7 - getPositionDelta fetches correct value ok 8 - setPositionDelta throws exception with bad argument ok 9 - getPositionDelta throws exception with argument ok 10 - setPositionDelta throws exception with no argument ok 11 - setPositionDelta throws exception with too many argument ok 12 - setPositionDelta accepts undef ok 13 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 14 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 15 - positionDelta->other() is a valid Bio::MAGE::Association::End ok 16 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 17 - positionDelta->self() is a valid Bio::MAGE::Association::End ok 18 - An object of class 'Bio::MAGE::ArrayDesign::Zone' isa 'Bio::MAGE::ArrayDesign::Zone' ok 19 - setZone returns value ok 20 - getZone fetches correct value ok 21 - setZone throws exception with bad argument ok 22 - getZone throws exception with argument ok 23 - setZone throws exception with no argument ok 24 - setZone throws exception with too many argument ok 25 - setZone accepts undef ok 26 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 27 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 28 - zone->other() is a valid Bio::MAGE::Association::End ok 29 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 30 - zone->self() is a valid Bio::MAGE::Association::End ok 31 - An object of class 'Bio::MAGE::Description::OntologyEntry' isa 'Bio::MAGE::Description::OntologyEntry' ok 32 - setDefectType returns value ok 33 - getDefectType fetches correct value ok 34 - setDefectType throws exception with bad argument ok 35 - getDefectType throws exception with argument ok 36 - setDefectType throws exception with no argument ok 37 - setDefectType throws exception with too many argument ok 38 - setDefectType accepts undef ok 39 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - defectType->other() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 43 - defectType->self() is a valid Bio::MAGE::Association::End ok 44 - propertySets set in new() ok 45 - setPropertySets returns correct value ok 46 - getPropertySets fetches correct value ok 47 - addPropertySets returns number of items in list ok 48 - addPropertySets adds correct value ok 49 - setPropertySets throws exception with non-array argument ok 50 - setPropertySets throws exception with bad argument array ok 51 - addPropertySets throws exception with no arguments ok 52 - addPropertySets throws exception with bad array ok 53 - setPropertySets accepts empty array ref ok 54 - getPropertySets throws exception with argument ok 55 - setPropertySets throws exception with no argument ok 56 - setPropertySets throws exception with too many argument ok 57 - setPropertySets accepts undef ok 58 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->other() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 62 - propertySets->self() is a valid Bio::MAGE::Association::End ok 63 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 64 - An object of class 'Bio::MAGE::Array::ZoneDefect' isa 'Bio::MAGE::Extendable' ok t/ZoneGroup.t .................... 1..94 ok 1 - use Bio::MAGE::ArrayDesign::ZoneGroup; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::ArrayDesign::ZoneGroup' ok 3 - package ok 4 - class_name ok 5 - zonesPerY new ok 6 - zonesPerY getter/setter ok 7 - zonesPerY getter throws exception with argument ok 8 - zonesPerY setter throws exception with no argument ok 9 - zonesPerY setter throws exception with too many argument ok 10 - zonesPerY setter accepts undef ok 11 - zonesPerX new ok 12 - zonesPerX getter/setter ok 13 - zonesPerX getter throws exception with argument ok 14 - zonesPerX setter throws exception with no argument ok 15 - zonesPerX setter throws exception with too many argument ok 16 - zonesPerX setter accepts undef ok 17 - spacingsBetweenZonesX new ok 18 - spacingsBetweenZonesX getter/setter ok 19 - spacingsBetweenZonesX getter throws exception with argument ok 20 - spacingsBetweenZonesX setter throws exception with no argument ok 21 - spacingsBetweenZonesX setter throws exception with too many argument ok 22 - spacingsBetweenZonesX setter accepts undef ok 23 - spacingsBetweenZonesY new ok 24 - spacingsBetweenZonesY getter/setter ok 25 - spacingsBetweenZonesY getter throws exception with argument ok 26 - spacingsBetweenZonesY setter throws exception with no argument ok 27 - spacingsBetweenZonesY setter throws exception with too many argument ok 28 - spacingsBetweenZonesY setter accepts undef ok 29 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 30 - setZoneLayout returns value ok 31 - getZoneLayout fetches correct value ok 32 - setZoneLayout throws exception with bad argument ok 33 - getZoneLayout throws exception with argument ok 34 - setZoneLayout throws exception with no argument ok 35 - setZoneLayout throws exception with too many argument ok 36 - setZoneLayout accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - zoneLayout->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - zoneLayout->self() is a valid Bio::MAGE::Association::End ok 42 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 43 - setDistanceUnit returns value ok 44 - getDistanceUnit fetches correct value ok 45 - setDistanceUnit throws exception with bad argument ok 46 - getDistanceUnit throws exception with argument ok 47 - setDistanceUnit throws exception with no argument ok 48 - setDistanceUnit throws exception with too many argument ok 49 - setDistanceUnit accepts undef ok 50 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 51 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 52 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 53 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 54 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 55 - propertySets set in new() ok 56 - setPropertySets returns correct value ok 57 - getPropertySets fetches correct value ok 58 - addPropertySets returns number of items in list ok 59 - addPropertySets adds correct value ok 60 - setPropertySets throws exception with non-array argument ok 61 - setPropertySets throws exception with bad argument array ok 62 - addPropertySets throws exception with no arguments ok 63 - addPropertySets throws exception with bad array ok 64 - setPropertySets accepts empty array ref ok 65 - getPropertySets throws exception with argument ok 66 - setPropertySets throws exception with no argument ok 67 - setPropertySets throws exception with too many argument ok 68 - setPropertySets accepts undef ok 69 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 70 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 71 - propertySets->other() is a valid Bio::MAGE::Association::End ok 72 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 73 - propertySets->self() is a valid Bio::MAGE::Association::End ok 74 - zoneLocations set in new() ok 75 - setZoneLocations returns correct value ok 76 - getZoneLocations fetches correct value ok 77 - addZoneLocations returns number of items in list ok 78 - addZoneLocations adds correct value ok 79 - setZoneLocations throws exception with non-array argument ok 80 - setZoneLocations throws exception with bad argument array ok 81 - addZoneLocations throws exception with no arguments ok 82 - addZoneLocations throws exception with bad array ok 83 - setZoneLocations accepts empty array ref ok 84 - getZoneLocations throws exception with argument ok 85 - setZoneLocations throws exception with no argument ok 86 - setZoneLocations throws exception with too many argument ok 87 - setZoneLocations accepts undef ok 88 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 89 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 90 - zoneLocations->other() is a valid Bio::MAGE::Association::End ok 91 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 92 - zoneLocations->self() is a valid Bio::MAGE::Association::End ok 93 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 94 - An object of class 'Bio::MAGE::ArrayDesign::ZoneGroup' isa 'Bio::MAGE::Extendable' ok t/ZoneLayout.t ................... 1..62 ok 1 - use Bio::MAGE::ArrayDesign::ZoneLayout; ok 2 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::ArrayDesign::ZoneLayout' ok 3 - package ok 4 - class_name ok 5 - spacingBetweenRows new ok 6 - spacingBetweenRows getter/setter ok 7 - spacingBetweenRows getter throws exception with argument ok 8 - spacingBetweenRows setter throws exception with no argument ok 9 - spacingBetweenRows setter throws exception with too many argument ok 10 - spacingBetweenRows setter accepts undef ok 11 - numFeaturesPerCol new ok 12 - numFeaturesPerCol getter/setter ok 13 - numFeaturesPerCol getter throws exception with argument ok 14 - numFeaturesPerCol setter throws exception with no argument ok 15 - numFeaturesPerCol setter throws exception with too many argument ok 16 - numFeaturesPerCol setter accepts undef ok 17 - numFeaturesPerRow new ok 18 - numFeaturesPerRow getter/setter ok 19 - numFeaturesPerRow getter throws exception with argument ok 20 - numFeaturesPerRow setter throws exception with no argument ok 21 - numFeaturesPerRow setter throws exception with too many argument ok 22 - numFeaturesPerRow setter accepts undef ok 23 - spacingBetweenCols new ok 24 - spacingBetweenCols getter/setter ok 25 - spacingBetweenCols getter throws exception with argument ok 26 - spacingBetweenCols setter throws exception with no argument ok 27 - spacingBetweenCols setter throws exception with too many argument ok 28 - spacingBetweenCols setter accepts undef ok 29 - An object of class 'Bio::MAGE::Measurement::DistanceUnit' isa 'Bio::MAGE::Measurement::DistanceUnit' ok 30 - setDistanceUnit returns value ok 31 - getDistanceUnit fetches correct value ok 32 - setDistanceUnit throws exception with bad argument ok 33 - getDistanceUnit throws exception with argument ok 34 - setDistanceUnit throws exception with no argument ok 35 - setDistanceUnit throws exception with too many argument ok 36 - setDistanceUnit accepts undef ok 37 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 38 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 39 - distanceUnit->other() is a valid Bio::MAGE::Association::End ok 40 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 41 - distanceUnit->self() is a valid Bio::MAGE::Association::End ok 42 - propertySets set in new() ok 43 - setPropertySets returns correct value ok 44 - getPropertySets fetches correct value ok 45 - addPropertySets returns number of items in list ok 46 - addPropertySets adds correct value ok 47 - setPropertySets throws exception with non-array argument ok 48 - setPropertySets throws exception with bad argument array ok 49 - addPropertySets throws exception with no arguments ok 50 - addPropertySets throws exception with bad array ok 51 - setPropertySets accepts empty array ref ok 52 - getPropertySets throws exception with argument ok 53 - setPropertySets throws exception with no argument ok 54 - setPropertySets throws exception with too many argument ok 55 - setPropertySets accepts undef ok 56 - An object of class 'Bio::MAGE::Association' isa 'Bio::MAGE::Association' ok 57 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 58 - propertySets->other() is a valid Bio::MAGE::Association::End ok 59 - An object of class 'Bio::MAGE::Association::End' isa 'Bio::MAGE::Association::End' ok 60 - propertySets->self() is a valid Bio::MAGE::Association::End ok 61 - An object of class 'Bio::MAGE::Extendable' isa 'Bio::MAGE::Extendable' ok 62 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok All tests successful. Files=151, Tests=16488, 17 wallclock secs ( 1.37 usr 0.45 sys + 13.69 cusr 2.93 csys = 18.44 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-mage-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Identifiable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/PhysicalBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/MeasuredBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/ImageAcquisition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayTreatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/QuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Error.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Failed.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/Node.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/Transformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/ReporterDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataTuples.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/FeatureDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ProtocolApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Software.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Protocol.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/SoftwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterizableApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterValue.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/DesignElementGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/FeatureGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/CompositeGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ReporterGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Unit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/QuantityUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TemperatureUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Measurement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/ConcentrationUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/MassUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Position.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/ExternalReference.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Database.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/DatabaseEntry.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/OntologyEntry.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Identifiable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::SecurityGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Error.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::ConcentrationUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ZoneDefect.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Base.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::StandardQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::FeatureExtraction.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Channel.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::DerivedSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Image.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::QuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Association.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::ImageAcquisition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::PhysicalArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataCube.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterPosition.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Compound.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::MismatchInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufactureDeviation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Extendable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDatum.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Reporter.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::PositionDelta.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::NameValueType.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Describable.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-mage-perl' in '../libbio-mage-perl_20030502.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-mage-perl_20030502.3-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2183355 and its subdirectories I: Current time: Sun Dec 28 09:21:17 +14 2025 I: pbuilder-time-stamp: 1766863277 + false + set +x Sat Dec 27 19:21:17 UTC 2025 I: Signing ./b2/libbio-mage-perl_20030502.3-6_amd64.buildinfo as libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc Sat Dec 27 19:21:17 UTC 2025 I: Signed ./b2/libbio-mage-perl_20030502.3-6_amd64.buildinfo as ./b2/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc Sat Dec 27 19:21:17 UTC 2025 - build #2 for libbio-mage-perl/trixie/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sat Dec 27 19:21:17 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-fir1XAD5, removing. /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf: total 1080 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 12:57 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 12:58 b2 -rw-r--r-- 1 jenkins jenkins 2158 Nov 27 2020 libbio-mage-perl_20030502.3-6.dsc -rw------- 1 jenkins jenkins 1088192 Nov 24 12:57 rbuildlog.EoHr3O3 /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1: total 2096 -rw-r--r-- 1 jenkins jenkins 1084556 Nov 24 12:57 build.log -rw-r--r-- 1 jenkins jenkins 3880 Nov 24 12:57 libbio-mage-perl_20030502.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2158 Nov 24 12:57 libbio-mage-perl_20030502.3-6.dsc -rw-r--r-- 1 jenkins jenkins 1018860 Nov 24 12:57 libbio-mage-perl_20030502.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 4780 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5662 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1289 Nov 24 12:57 libbio-mage-perl_20030502.3-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1467 Nov 24 12:57 libbio-mage-perl_20030502.3-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2: total 2092 -rw-r--r-- 1 jenkins jenkins 1086491 Nov 24 12:58 build.log -rw-r--r-- 1 jenkins jenkins 3880 Nov 24 12:58 libbio-mage-perl_20030502.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2158 Nov 24 12:58 libbio-mage-perl_20030502.3-6.dsc -rw-r--r-- 1 jenkins jenkins 1018860 Nov 24 12:58 libbio-mage-perl_20030502.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 4783 Nov 24 12:58 libbio-mage-perl_20030502.3-6_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 5665 Nov 24 12:58 libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1289 Nov 24 12:58 libbio-mage-perl_20030502.3-6_amd64.changes -rw-r--r-- 1 jenkins jenkins 1467 Nov 24 12:58 libbio-mage-perl_20030502.3-6_source.changes Sun Nov 24 12:58:18 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Nov 24 12:58:19 UTC 2024 I: libbio-mage-perl_20030502.3-6_amd64.changes: Format: 1.8 Date: Fri, 27 Nov 2020 11:37:09 +0100 Source: libbio-mage-perl Binary: libbio-mage-perl Architecture: all Version: 20030502.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-mage-perl - Container module for classes in the MAGE package: MAGE Changes: libbio-mage-perl (20030502.3-6) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) Checksums-Sha1: 267ef35b3078e247ed272674b1a6e310040c6ba1 1018860 libbio-mage-perl_20030502.3-6_all.deb 69175b479abfeeae04752eda05f623b8c3e9fcd4 4780 libbio-mage-perl_20030502.3-6_amd64.buildinfo Checksums-Sha256: 2a10ab6ea236b792ab1466c86ee2db97301c6cce07451e19b8b19cb5c8b9607e 1018860 libbio-mage-perl_20030502.3-6_all.deb 0f4b33f4893d7d74482b36d92ee555ea6d89beab071b03f76d5b129dbc0c90b0 4780 libbio-mage-perl_20030502.3-6_amd64.buildinfo Files: d46f6145d6ff4ad2898c143746d63e65 1018860 perl optional libbio-mage-perl_20030502.3-6_all.deb 1d25fae3325379534d992d18aa5ee3a6 4780 science optional libbio-mage-perl_20030502.3-6_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbio-mage-perl_20030502.3-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbio-mage-perl_20030502.3-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbio-mage-perl_20030502.3-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/libbio-mage-perl_20030502.3-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/libbio-mage-perl_20030502.3-6_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbio-mage-perl_20030502.3-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 12:57:16.726918182 +0000 +++ b2/build.log 2024-11-24 12:58:18.628100703 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 24 00:56:00 -12 2024 -I: pbuilder-time-stamp: 1732452960 +I: Current time: Sun Dec 28 09:20:19 +14 2025 +I: pbuilder-time-stamp: 1766863219 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,51 +28,83 @@ dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 27 19:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0dfd5cb9156248c7b53ebb6abf560269' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3022037' - PS1='# ' - PS2='> ' + INVOCATION_ID=69e335bac27e48de80886b3d6694ea19 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2183355 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_z8Z3 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1 --logfile b1/build.log libbio-mage-perl_20030502.3-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/pbuilderrc_ACBI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2 --logfile b2/build.log libbio-mage-perl_20030502.3-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3022037/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -140,7 +172,7 @@ Get: 28 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libtie-ixhash-perl all 1.23-4 [11.7 kB] -Fetched 19.8 MB in 0s (72.6 MB/s) +Fetched 19.8 MB in 1s (20.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) @@ -275,7 +307,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-mage-perl-20030502.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-mage-perl_20030502.3-6_source.changes dpkg-buildpackage: info: source package libbio-mage-perl dpkg-buildpackage: info: source version 20030502.3-6 dpkg-buildpackage: info: source distribution unstable @@ -299,158 +335,158 @@ dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-mage-perl-20030502.3' -cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm -cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm +cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm +cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm +cp MAGE.pm blib/lib/Bio/MAGE.pm +cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm +cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm +cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm +cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm +cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm cp MAGE/ArrayDesign/FeatureGroup.pm blib/lib/Bio/MAGE/ArrayDesign/FeatureGroup.pm -cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm +cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm +cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm +cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm +cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm +cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm +cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm +cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm +cp MAGE/AuditAndSecurity/Audit.pm blib/lib/Bio/MAGE/AuditAndSecurity/Audit.pm +cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm cp MAGE/Array/ManufactureLIMSBiomaterial.pm blib/lib/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm -cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm -cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm -cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm +cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm cp MAGE/Array/Fiducial.pm blib/lib/Bio/MAGE/Array/Fiducial.pm -cp MAGE.pm blib/lib/Bio/MAGE.pm -cp MAGE/Array/Array.pm blib/lib/Bio/MAGE/Array/Array.pm -cp MAGE/ArrayDesign/ZoneLayout.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneLayout.pm -cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm -cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm -cp MAGE/ArrayDesign/ReporterGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ReporterGroup.pm cp MAGE/Base.pm blib/lib/Bio/MAGE/Base.pm -cp MAGE/AuditAndSecurity/Contact.pm blib/lib/Bio/MAGE/AuditAndSecurity/Contact.pm -cp MAGE/Association.pm blib/lib/Bio/MAGE/Association.pm +cp MAGE/Array/ArrayManufactureDeviation.pm blib/lib/Bio/MAGE/Array/ArrayManufactureDeviation.pm +cp MAGE/Array.pm blib/lib/Bio/MAGE/Array.pm +cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm +cp MAGE/AuditAndSecurity/Person.pm blib/lib/Bio/MAGE/AuditAndSecurity/Person.pm +cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm +cp MAGE/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign.pm cp MAGE/Array/ArrayManufacture.pm blib/lib/Bio/MAGE/Array/ArrayManufacture.pm -cp MAGE/BQS.pm blib/lib/Bio/MAGE/BQS.pm +cp MAGE/BQS/BibliographicReference.pm blib/lib/Bio/MAGE/BQS/BibliographicReference.pm cp MAGE/Array/FeatureDefect.pm blib/lib/Bio/MAGE/Array/FeatureDefect.pm -cp MAGE/ArrayDesign/PhysicalArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm -cp MAGE/ArrayDesign/DesignElementGroup.pm blib/lib/Bio/MAGE/ArrayDesign/DesignElementGroup.pm cp MAGE/Array/PositionDelta.pm blib/lib/Bio/MAGE/Array/PositionDelta.pm -cp MAGE/ArrayDesign/CompositeGroup.pm blib/lib/Bio/MAGE/ArrayDesign/CompositeGroup.pm -cp MAGE/Array/ArrayGroup.pm blib/lib/Bio/MAGE/Array/ArrayGroup.pm -cp MAGE/AuditAndSecurity/SecurityGroup.pm blib/lib/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm -cp MAGE/Array/ZoneDefect.pm blib/lib/Bio/MAGE/Array/ZoneDefect.pm -cp MAGE/ArrayDesign/ZoneGroup.pm blib/lib/Bio/MAGE/ArrayDesign/ZoneGroup.pm -cp MAGE/ArrayDesign/ArrayDesign.pm blib/lib/Bio/MAGE/ArrayDesign/ArrayDesign.pm -cp MAGE/AuditAndSecurity/Organization.pm blib/lib/Bio/MAGE/AuditAndSecurity/Organization.pm -cp MAGE/Array/ManufactureLIMS.pm blib/lib/Bio/MAGE/Array/ManufactureLIMS.pm -cp MAGE/BioAssay.pm blib/lib/Bio/MAGE/BioAssay.pm -cp MAGE/ArrayDesign/Zone.pm blib/lib/Bio/MAGE/ArrayDesign/Zone.pm +cp MAGE/AuditAndSecurity.pm blib/lib/Bio/MAGE/AuditAndSecurity.pm +cp MAGE/AuditAndSecurity/Security.pm blib/lib/Bio/MAGE/AuditAndSecurity/Security.pm +cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm +cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm cp MAGE/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData.pm -cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm -cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm -cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm -cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm -cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm -cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm cp MAGE/BioAssay/BioAssayTreatment.pm blib/lib/Bio/MAGE/BioAssay/BioAssayTreatment.pm +cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm +cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm cp MAGE/BioAssayData/DesignElementDimension.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementDimension.pm cp MAGE/BioAssayData/FeatureDimension.pm blib/lib/Bio/MAGE/BioAssayData/FeatureDimension.pm -cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm -cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm -cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm -cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm cp MAGE/BioAssayData/BioDataValues.pm blib/lib/Bio/MAGE/BioAssayData/BioDataValues.pm -cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm -cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm -cp MAGE/BioAssay/ImageAcquisition.pm blib/lib/Bio/MAGE/BioAssay/ImageAcquisition.pm -cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm -cp MAGE/BioAssayData/MeasuredBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm -cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm +cp MAGE/BioAssay/FeatureExtraction.pm blib/lib/Bio/MAGE/BioAssay/FeatureExtraction.pm cp MAGE/BioAssay/BioAssay.pm blib/lib/Bio/MAGE/BioAssay/BioAssay.pm -cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm +cp MAGE/BioAssayData/BioDataTuples.pm blib/lib/Bio/MAGE/BioAssayData/BioDataTuples.pm cp MAGE/BioAssayData/BioAssayDimension.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDimension.pm -cp MAGE/BioAssayData/BioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayData.pm -cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm +cp MAGE/BioAssayData/DesignElementMap.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMap.pm +cp MAGE/BioAssay/Hybridization.pm blib/lib/Bio/MAGE/BioAssay/Hybridization.pm cp MAGE/BioAssayData/DesignElementMapping.pm blib/lib/Bio/MAGE/BioAssayData/DesignElementMapping.pm -cp MAGE/BioAssayData/BioAssayDatum.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayDatum.pm -cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm -cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm -cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm +cp MAGE/BioAssay/Image.pm blib/lib/Bio/MAGE/BioAssay/Image.pm +cp MAGE/BioAssay/MeasuredBioAssay.pm blib/lib/Bio/MAGE/BioAssay/MeasuredBioAssay.pm +cp MAGE/BioAssay/BioAssayCreation.pm blib/lib/Bio/MAGE/BioAssay/BioAssayCreation.pm +cp MAGE/BioAssay/PhysicalBioAssay.pm blib/lib/Bio/MAGE/BioAssay/PhysicalBioAssay.pm +cp MAGE/BioAssayData/CompositeSequenceDimension.pm blib/lib/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm +cp MAGE/BioAssayData/BioAssayMap.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMap.pm +cp MAGE/BioAssayData/QuantitationTypeDimension.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm +cp MAGE/BioAssayData/DerivedBioAssayData.pm blib/lib/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm +cp MAGE/BioAssay/Channel.pm blib/lib/Bio/MAGE/BioAssay/Channel.pm +cp MAGE/BioAssayData/BioDataCube.pm blib/lib/Bio/MAGE/BioAssayData/BioDataCube.pm +cp MAGE/BioAssayData/BioAssayMapping.pm blib/lib/Bio/MAGE/BioAssayData/BioAssayMapping.pm +cp MAGE/BioAssay/DerivedBioAssay.pm blib/lib/Bio/MAGE/BioAssay/DerivedBioAssay.pm cp MAGE/BioAssayData/QuantitationTypeMap.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm -cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm -cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm -cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm -cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm -cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm cp MAGE/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial.pm -cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm -cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm -cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm -cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm +cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm cp MAGE/BioSequence/SequencePosition.pm blib/lib/Bio/MAGE/BioSequence/SequencePosition.pm +cp MAGE/BioEvent/Map.pm blib/lib/Bio/MAGE/BioEvent/Map.pm +cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm +cp MAGE/BioMaterial/BioMaterialMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm cp MAGE/Description/ExternalReference.pm blib/lib/Bio/MAGE/Description/ExternalReference.pm -cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm -cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm cp MAGE/BioMaterial/BioSource.pm blib/lib/Bio/MAGE/BioMaterial/BioSource.pm -cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm +cp MAGE/BioMaterial/Treatment.pm blib/lib/Bio/MAGE/BioMaterial/Treatment.pm +cp MAGE/BioMaterial/BioMaterial.pm blib/lib/Bio/MAGE/BioMaterial/BioMaterial.pm +cp MAGE/BioMaterial/LabeledExtract.pm blib/lib/Bio/MAGE/BioMaterial/LabeledExtract.pm +cp MAGE/BioSequence/SeqFeature.pm blib/lib/Bio/MAGE/BioSequence/SeqFeature.pm +cp MAGE/Description/DatabaseEntry.pm blib/lib/Bio/MAGE/Description/DatabaseEntry.pm +cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm +cp MAGE/BioMaterial/BioSample.pm blib/lib/Bio/MAGE/BioMaterial/BioSample.pm cp MAGE/Description/OntologyEntry.pm blib/lib/Bio/MAGE/Description/OntologyEntry.pm -cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm -cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm cp MAGE/DesignElement/CompositeCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/CompositeCompositeMap.pm cp MAGE/Description/Description.pm blib/lib/Bio/MAGE/Description/Description.pm +cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm +cp MAGE/DesignElement.pm blib/lib/Bio/MAGE/DesignElement.pm cp MAGE/DesignElement/CompositePosition.pm blib/lib/Bio/MAGE/DesignElement/CompositePosition.pm -cp MAGE/Description/Database.pm blib/lib/Bio/MAGE/Description/Database.pm -cp MAGE/BioAssayData/ReporterDimension.pm blib/lib/Bio/MAGE/BioAssayData/ReporterDimension.pm cp MAGE/Description.pm blib/lib/Bio/MAGE/Description.pm -cp MAGE/BioEvent.pm blib/lib/Bio/MAGE/BioEvent.pm -cp MAGE/BioAssayData/QuantitationTypeMapping.pm blib/lib/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm -cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm -cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm -cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm +cp MAGE/BioSequence/BioSequence.pm blib/lib/Bio/MAGE/BioSequence/BioSequence.pm +cp MAGE/BioMaterial/Compound.pm blib/lib/Bio/MAGE/BioMaterial/Compound.pm +cp MAGE/BioAssayData/Transformation.pm blib/lib/Bio/MAGE/BioAssayData/Transformation.pm +cp MAGE/BioSequence/SeqFeatureLocation.pm blib/lib/Bio/MAGE/BioSequence/SeqFeatureLocation.pm +cp MAGE/BioEvent/BioEvent.pm blib/lib/Bio/MAGE/BioEvent/BioEvent.pm +cp MAGE/BioMaterial/CompoundMeasurement.pm blib/lib/Bio/MAGE/BioMaterial/CompoundMeasurement.pm +cp MAGE/BioSequence.pm blib/lib/Bio/MAGE/BioSequence.pm +cp MAGE/Describable.pm blib/lib/Bio/MAGE/Describable.pm +cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm +cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm +cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm +cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm cp MAGE/Experiment.pm blib/lib/Bio/MAGE/Experiment.pm -cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm -cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm -cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm +cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm cp MAGE/Experiment/FactorValue.pm blib/lib/Bio/MAGE/Experiment/FactorValue.pm -cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm -cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm -cp MAGE/DesignElement/FeatureReporterMap.pm blib/lib/Bio/MAGE/DesignElement/FeatureReporterMap.pm -cp MAGE/DesignElement/ReporterCompositeMap.pm blib/lib/Bio/MAGE/DesignElement/ReporterCompositeMap.pm cp MAGE/DesignElement/ReporterPosition.pm blib/lib/Bio/MAGE/DesignElement/ReporterPosition.pm -cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm -cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm +cp MAGE/HigherLevelAnalysis.pm blib/lib/Bio/MAGE/HigherLevelAnalysis.pm cp MAGE/Experiment/Experiment.pm blib/lib/Bio/MAGE/Experiment/Experiment.pm cp MAGE/Measurement/Measurement.pm blib/lib/Bio/MAGE/Measurement/Measurement.pm +cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm +cp MAGE/HigherLevelAnalysis/NodeContents.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm +cp MAGE/DesignElement/Feature.pm blib/lib/Bio/MAGE/DesignElement/Feature.pm +cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm +cp MAGE/Experiment/ExperimentDesign.pm blib/lib/Bio/MAGE/Experiment/ExperimentDesign.pm +cp MAGE/Measurement/DistanceUnit.pm blib/lib/Bio/MAGE/Measurement/DistanceUnit.pm cp MAGE/Identifiable.pm blib/lib/Bio/MAGE/Identifiable.pm +cp MAGE/DesignElement/Position.pm blib/lib/Bio/MAGE/DesignElement/Position.pm +cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm cp MAGE/Measurement.pm blib/lib/Bio/MAGE/Measurement.pm -cp MAGE/DesignElement/FeatureLocation.pm blib/lib/Bio/MAGE/DesignElement/FeatureLocation.pm -cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm -cp MAGE/Experiment/ExperimentalFactor.pm blib/lib/Bio/MAGE/Experiment/ExperimentalFactor.pm -cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm +cp MAGE/DesignElement/FeatureInformation.pm blib/lib/Bio/MAGE/DesignElement/FeatureInformation.pm +cp MAGE/Measurement/QuantityUnit.pm blib/lib/Bio/MAGE/Measurement/QuantityUnit.pm +cp MAGE/HigherLevelAnalysis/Node.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/Node.pm cp MAGE/DesignElement/Reporter.pm blib/lib/Bio/MAGE/DesignElement/Reporter.pm -cp MAGE/DesignElement/CompositeSequence.pm blib/lib/Bio/MAGE/DesignElement/CompositeSequence.pm +cp MAGE/Measurement/ConcentrationUnit.pm blib/lib/Bio/MAGE/Measurement/ConcentrationUnit.pm +cp MAGE/DesignElement/MismatchInformation.pm blib/lib/Bio/MAGE/DesignElement/MismatchInformation.pm +cp MAGE/DesignElement/DesignElement.pm blib/lib/Bio/MAGE/DesignElement/DesignElement.pm cp MAGE/Measurement/MassUnit.pm blib/lib/Bio/MAGE/Measurement/MassUnit.pm -cp MAGE/Extendable.pm blib/lib/Bio/MAGE/Extendable.pm -cp MAGE/HigherLevelAnalysis/NodeValue.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm -cp MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm blib/lib/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm -cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm +cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm cp MAGE/QuantitationType/DerivedSignal.pm blib/lib/Bio/MAGE/QuantitationType/DerivedSignal.pm +cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm +cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm +cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm cp MAGE/Protocol/Parameter.pm blib/lib/Bio/MAGE/Protocol/Parameter.pm cp MAGE/QuantitationType/SpecializedQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm +cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm +cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm +cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm cp MAGE/QuantitationType/Failed.pm blib/lib/Bio/MAGE/QuantitationType/Failed.pm cp classes.pm blib/lib/Bio/classes.pm -cp MAGE/QuantitationType/PValue.pm blib/lib/Bio/MAGE/QuantitationType/PValue.pm -cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm -cp MAGE/Protocol/Parameterizable.pm blib/lib/Bio/MAGE/Protocol/Parameterizable.pm -cp MAGE/QuantitationType/ExpectedValue.pm blib/lib/Bio/MAGE/QuantitationType/ExpectedValue.pm -cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm -cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm -cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm -cp MAGE/Measurement/Unit.pm blib/lib/Bio/MAGE/Measurement/Unit.pm -cp MAGE/QuantitationType/PresentAbsent.pm blib/lib/Bio/MAGE/QuantitationType/PresentAbsent.pm -cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm -cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm +cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm cp MAGE/QuantitationType/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/QuantitationType.pm +cp MAGE/QuantitationType/MeasuredSignal.pm blib/lib/Bio/MAGE/QuantitationType/MeasuredSignal.pm cp MAGE/Protocol/ProtocolApplication.pm blib/lib/Bio/MAGE/Protocol/ProtocolApplication.pm -cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm +cp MAGE/QuantitationType.pm blib/lib/Bio/MAGE/QuantitationType.pm +cp MAGE/QuantitationType/ConfidenceIndicator.pm blib/lib/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm cp MAGE/Protocol/Protocol.pm blib/lib/Bio/MAGE/Protocol/Protocol.pm -cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm +cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm +cp MAGE/Protocol/Software.pm blib/lib/Bio/MAGE/Protocol/Software.pm +cp MAGE/Measurement/TimeUnit.pm blib/lib/Bio/MAGE/Measurement/TimeUnit.pm cp MAGE/NameValueType.pm blib/lib/Bio/MAGE/NameValueType.pm cp MAGE/QuantitationType/Error.pm blib/lib/Bio/MAGE/QuantitationType/Error.pm +cp MAGE/Protocol/ParameterizableApplication.pm blib/lib/Bio/MAGE/Protocol/ParameterizableApplication.pm cp MAGE/Protocol/SoftwareApplication.pm blib/lib/Bio/MAGE/Protocol/SoftwareApplication.pm -cp MAGE/Protocol.pm blib/lib/Bio/MAGE/Protocol.pm -cp MAGE/Measurement/TemperatureUnit.pm blib/lib/Bio/MAGE/Measurement/TemperatureUnit.pm -cp MAGE/QuantitationType/Ratio.pm blib/lib/Bio/MAGE/QuantitationType/Ratio.pm -cp MAGE/Protocol/ParameterValue.pm blib/lib/Bio/MAGE/Protocol/ParameterValue.pm +cp MAGE/Measurement/VolumeUnit.pm blib/lib/Bio/MAGE/Measurement/VolumeUnit.pm +cp MAGE/QuantitationType/StandardQuantitationType.pm blib/lib/Bio/MAGE/QuantitationType/StandardQuantitationType.pm cp MAGE/Protocol/HardwareApplication.pm blib/lib/Bio/MAGE/Protocol/HardwareApplication.pm +cp MAGE/Protocol/Hardware.pm blib/lib/Bio/MAGE/Protocol/Hardware.pm Manifying 29 pod documents Manifying 28 pod documents Manifying 27 pod documents @@ -17405,7 +17441,7 @@ ok 62 - An object of class 'Bio::MAGE::ArrayDesign::ZoneLayout' isa 'Bio::MAGE::Extendable' ok All tests successful. -Files=151, Tests=16488, 14 wallclock secs ( 0.58 usr 0.15 sys + 8.27 cusr 1.04 csys = 10.04 CPU) +Files=151, Tests=16488, 17 wallclock secs ( 1.37 usr 0.45 sys + 13.69 cusr 2.93 csys = 18.44 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' create-stamp debian/debhelper-build-stamp @@ -17419,309 +17455,309 @@ Manifying 27 pod documents Manifying 28 pod documents Manifying 12 pod documents -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/classes.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Identifiable.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Extendable.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Base.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Describable.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Error.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Failed.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/QuantitationType.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/OntologyEntry.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Database.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/DatabaseEntry.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/ExternalReference.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Association.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/NameValueType.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/PhysicalBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/MeasuredBioAssay.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Image.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/ImageAcquisition.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/DerivedBioAssay.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayTreatment.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssayCreation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/FeatureDimension.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/ReporterDimension.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayData.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Hybridization.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/BioAssay.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/Channel.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssay/FeatureExtraction.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SequencePosition.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/BioSequence.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeature.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioSequence/SeqFeatureLocation.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Ratio.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/StandardQuantitationType.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/QuantitationType.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Error.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/SpecializedQuantitationType.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PresentAbsent.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/Failed.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ExpectedValue.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/PValue.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/MeasuredSignal.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/DerivedSignal.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/QuantitationType/ConfidenceIndicator.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentDesign.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/ExperimentalFactor.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/Experiment.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Experiment/FactorValue.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/Map.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioEvent/BioEvent.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/Node.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMapping.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeDimension.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DerivedBioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/CompositeSequenceDimension.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDimension.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayData.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/Transformation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataCube.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/MeasuredBioAssayData.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMapping.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/ReporterDimension.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataTuples.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/QuantitationTypeMapping.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/DesignElementMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Position.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/Node.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeContents.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/BioAssayDataCluster.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/HigherLevelAnalysis/NodeValue.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayMap.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioDataValues.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/BioAssayDatum.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioAssayData/FeatureDimension.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Compound.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterialMeasurement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/LabeledExtract.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/CompoundMeasurement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSample.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioMaterial.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/Treatment.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BioMaterial/BioSource.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ProtocolApplication.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Software.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Protocol.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/HardwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/SoftwareApplication.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterizableApplication.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameterizable.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/ParameterValue.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Parameter.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Protocol/Hardware.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/BQS/BibliographicReference.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/DesignElementGroup.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/FeatureGroup.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneLayout.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ZoneGroup.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/Zone.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/CompositeGroup.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/PhysicalArrayDesign.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/ArrayDesign/ReporterGroup.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMS.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Fiducial.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ZoneDefect.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufacture.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/FeatureDefect.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/PositionDelta.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayGroup.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/Array.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ManufactureLIMSBiomaterial.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Array/ArrayManufactureDeviation.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Unit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/QuantityUnit.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/VolumeUnit.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TemperatureUnit.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/TimeUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/Measurement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/ConcentrationUnit.pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/MassUnit.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Measurement/DistanceUnit.pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMSBiomaterial.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureReporterMap.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterCompositeMap.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/DesignElement.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Position.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Feature.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureInformation.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/FeatureLocation.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/ReporterPosition.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/Reporter.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeCompositeMap.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositePosition.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/MismatchInformation.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/DesignElement/CompositeSequence.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/ExternalReference.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Database.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/DatabaseEntry.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/Description.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/Description/OntologyEntry.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Organization.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/SecurityGroup.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Person.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Security.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Contact.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/perl5/Bio/MAGE/AuditAndSecurity/Audit.pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Protocol.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Hardware.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Identifiable.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeDimension.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Organization.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameter.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::MeasuredBioAssayData.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BQS::BibliographicReference.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TemperatureUnit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::FeatureDefect.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::ReporterDimension.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMapping.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm -Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ManufactureLIMS.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayTreatment.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayData.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::PhysicalBioAssay.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::LabeledExtract.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneGroup.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::DesignElementGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayGroup.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Measurement.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::MassUnit.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMap.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::Treatment.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterial.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Fiducial.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementDimension.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::SpecializedQuantitationType.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::SoftwareApplication.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DerivedBioAssayData.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::VolumeUnit.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositePosition.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::DistanceUnit.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Association.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Database.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ExpectedValue.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::DatabaseEntry.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::Zone.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::Transformation.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Contact.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataTuples.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ReporterGroup.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::FeatureGroup.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Base.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Extendable.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::QuantitationTypeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ZoneLayout.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Security.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::ConfidenceIndicator.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::HardwareApplication.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::QuantityUnit.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SequencePosition.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Person.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::BioAssayCreation.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::Description.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::BioAssayDataCluster.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::ArrayDesign.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::CompoundMeasurement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::ReporterCompositeMap.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm -Installing 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-Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterValue.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::ExperimentalFactor.3pm Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayDimension.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioAssayMapping.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::Array.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Parameterizable.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSample.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Array::ArrayManufacture.3pm -Installing 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/build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::ExternalReference.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Failed.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ParameterizableApplication.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::TimeUnit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureReporterMap.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Position.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::Ratio.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::Feature.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::FactorValue.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PresentAbsent.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::MeasuredBioAssay.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::PValue.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::Software.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::CompositeSequence.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::FeatureDimension.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::Map.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::DesignElement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::NameValueType.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::QuantitationType::MeasuredSignal.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::BioSequence.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::AuditAndSecurity::Audit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::ArrayDesign::CompositeGroup.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::Hybridization.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Experiment::Experiment.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::CompositeSequenceDimension.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeature.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol::ProtocolApplication.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMapping.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Measurement::Unit.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeContents.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureInformation.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioMaterialMeasurement.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::DesignElement::FeatureLocation.3pm Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::Node.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Protocol.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::DesignElementMap.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioEvent::BioEvent.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssayData::BioDataValues.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::HigherLevelAnalysis::NodeValue.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioAssay::DerivedBioAssay.3pm -Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioMaterial::BioSource.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::BioSequence::SeqFeatureLocation.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Description::OntologyEntry.3pm +Installing /build/reproducible-path/libbio-mage-perl-20030502.3/debian/libbio-mage-perl/usr/share/man/man3/Bio::MAGE::Describable.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-mage-perl-20030502.3' dh_installdocs dh_installchangelogs @@ -17744,12 +17780,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2183355/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3022037 and its subdirectories -I: Current time: Sun Nov 24 00:57:15 -12 2024 -I: pbuilder-time-stamp: 1732453035 +I: removing directory /srv/workspace/pbuilder/2183355 and its subdirectories +I: Current time: Sun Dec 28 09:21:17 +14 2025 +I: pbuilder-time-stamp: 1766863277 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbio-mage-perl_20030502.3-6.diff: 92.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/libbio-mage-perl_20030502.3-6.diff.gz b2/build.log: 92.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 92.1% -- replaced with stdout Sun Nov 24 12:58:20 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbio-mage-perl_trixie_amd64_1732453100 + touch /var/log/reproducible-builds/diffoscope_stamp_libbio-mage-perl_trixie_amd64_1732453100 + RESULT=0 + systemd-run '--description=diffoscope on libbio-mage-perl/20030502.3-6 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_35-35584 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf --run-session -c jenkins-reproducible-trixie-diffoscope-f30d7194-0403-482f-bd8f-d9865c31977c -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/dbd-tmp-QhMcj1N ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1/libbio-mage-perl_20030502.3-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2/libbio-mage-perl_20030502.3-6_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_35-35584.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/libbio-mage-perl_20030502.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b1/libbio-mage-perl_20030502.3-6_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.5OyS9jMf/b2/libbio-mage-perl_20030502.3-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.402s) 0.402s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.028s) 0.028s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 712ms CPU time consumed: 712ms _ _ _ _ _ | (_) |__ | |__ (_) ___ _ __ ___ __ _ __ _ ___ _ __ ___ | | | '_ \| '_ \| |/ _ \ _____| '_ ` _ \ / _` |/ _` |/ _ \_____| '_ \ / _ \ | | | |_) | |_) | | (_) |_____| | | | | | (_| | (_| | __/_____| |_) | __/ |_|_|_.__/|_.__/|_|\___/ |_| |_| |_|\__,_|\__, |\___| | .__/ \___| |___/ |_| _ _ __| | | '__| | | | | | |_| |_| Sun Nov 24 12:58:21 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 12:58:21 UTC 2024 I: libbio-mage-perl from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 12:58:22] INFO: Starting at 2024-11-24 12:58:22.202600 [2024-11-24 12:58:22] INFO: Generating the pages of 1 package(s) [2024-11-24 12:58:22] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/libbio-mage-perl didn't produce a buildlog, even though it has been built. [2024-11-24 12:58:22] INFO: Finished at 2024-11-24 12:58:22.650011, took: 0:00:00.447418 Sun Nov 24 12:58:22 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/libbio-mage-perl.html Sun Nov 24 12:58:22 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 12:58:22 UTC 2024 I: Submitting 8.0K b1/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc https://buildinfo.debian.net/69175b479abfeeae04752eda05f623b8c3e9fcd4/libbio-mage-perl_20030502.3-6_all Sun Nov 24 12:58:23 UTC 2024 I: Submitting 8.0K b2/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc https://buildinfo.debian.net/ba192fb38d06ddbf9157ad6309461f4de1a86695/libbio-mage-perl_20030502.3-6_all Sun Nov 24 12:58:24 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 12:58:24 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 12:58:24 UTC 2024 I: Removing signed libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc files: removed './b1/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc' removed './b2/libbio-mage-perl_20030502.3-6_amd64.buildinfo.asc' 1732453104 amd64 trixie libbio-mage-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbio-mage-perl_20030502.3-6.rbuild.log: 91.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/libbio-mage-perl_20030502.3-6.rbuild.log.gz [2024-11-24 12:58:25] INFO: Starting at 2024-11-24 12:58:25.336505 [2024-11-24 12:58:25] INFO: Generating the pages of 1 package(s) [2024-11-24 12:58:25] INFO: Finished at 2024-11-24 12:58:25.758536, took: 0:00:00.422037 All cleanup done. Sun Nov 24 12:58:25 UTC 2024 - total duration: 0h 2m 38s. Sun Nov 24 12:58:25 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-y7JHcBWb, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 42.472s CPU time consumed: 7.333s