Running as unit: rb-build-amd64_35-35638.service ==================================================================================== Sun Nov 24 17:49:27 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_35) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Sun Nov 24 17:49:27 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-5E4r33GK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 17:49:27 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 17:49:27 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-LAls3F' Sun Nov 24 17:49:28 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 17:49:28 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-Z1zCdP' ok, let's check if sigma-align is building anywhere yet… ok, sigma-align is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of sigma-align in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Sun Nov 24 17:49:48 UTC 2024 I: starting to build sigma-align/unstable/amd64 on jenkins on '2024-11-24 17:49' Sun Nov 24 17:49:48 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/35638/console.log 1732470588 amd64 unstable sigma-align Sun Nov 24 17:49:48 UTC 2024 I: Downloading source for unstable/sigma-align=1.1.3-9 --2024-11-24 17:49:48-- http://deb.debian.org/debian/pool/main/s/sigma-align/sigma-align_1.1.3-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2199 (2.1K) [text/prs.lines.tag] Saving to: ‘sigma-align_1.1.3-9.dsc’ 0K .. 100% 241M=0s 2024-11-24 17:49:48 (241 MB/s) - ‘sigma-align_1.1.3-9.dsc’ saved [2199/2199] --2024-11-24 17:49:48-- http://deb.debian.org/debian/pool/main/s/sigma-align/sigma-align_1.1.3-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2199 (2.1K) [text/prs.lines.tag] Saving to: ‘sigma-align_1.1.3-9.dsc’ 0K .. 100% 241M=0s 2024-11-24 17:49:48 (241 MB/s) - ‘sigma-align_1.1.3-9.dsc’ saved [2199/2199] Sun Nov 24 17:49:48 UTC 2024 I: sigma-align_1.1.3-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: sigma-align Binary: sigma-align Architecture: any Version: 1.1.3-9 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://www.imsc.res.in/~rsidd/sigma/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/sigma-align Vcs-Git: https://salsa.debian.org/med-team/sigma-align.git Testsuite: autopkgtest Testsuite-Triggers: last-align Build-Depends: debhelper-compat (= 13), libglib2.0-dev Package-List: sigma-align deb science optional arch=any Checksums-Sha1: 38d77a438c2fd801144d78cd4418ded1f81438f3 129263 sigma-align_1.1.3.orig.tar.gz 11f49478cae3d289207b10d6152eccedf2d3da2e 4624 sigma-align_1.1.3-9.debian.tar.xz Checksums-Sha256: e11deb2c184d96c263ed9129a063829d9872c47e6caa1675675faf1a02c44c91 129263 sigma-align_1.1.3.orig.tar.gz 54c4ab4532337c820b44e3aa830c8ce022ab82f8f1edbe220fd148f3334465d3 4624 sigma-align_1.1.3-9.debian.tar.xz Files: 36161cb7227b7c66e0c1a7a1b93aa81f 129263 sigma-align_1.1.3.orig.tar.gz 16c5d2b99b4e7a5d47c665cdd14dfc4d 4624 sigma-align_1.1.3-9.debian.tar.xz Dgit: 890b18b8dcaf8ddda9e7d6c81f78cb1546527afd debian archive/debian/1.1.3-9 https://git.dgit.debian.org/sigma-align -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmXtpRgUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqIIhAAkFSRy56OhiQMVJgQMRzBl+RIFEWI P9x8Ri0ISRsbEjqDl2qpm+KujPhTEq596pw1h3+wwos9PZNukpQh+OQIrpsmdS8k R3A+aYpcURQrRgGvylqrnobyrrcmD0RfPyVIkWuh2qGIY1BrmP3rg4aHiy3loFfe QiIZaQ//W+QImWeRKhW0PgUwFN+RMwkJUGoAtH+I0KWGrkjzdozNiWQpS7OuxOAt C5vlIhg+z6SOjIhh0uXMZfCxr4wcT0+wXjsfAw8cJXq7yfpR52ZKsf8xYnkJIENq a2LrhGoagHGTr+f/qjeAHRFTr4d+LpPa/6+ZduivdnQZra+2Td7zGKBXSXM7vM53 rWDFBJQt0EyyUo+nF8hA9smTcoxXC7OU1PzHrOQmmc9Hb+Hu3g00Zyj+wBq9fiBy I9BShM7zdZnpTDvPxVMOGG3pXlhKMecqzFPTtqsT65pLOJbscZwr9NHEkyWKUkii qu2MtHVX/NPmbqJ6UX6ncpdxV+BTuWzpHMyPhdaAZ8So7G/Q65il7pBCNG5JwClD 1Zeqyq6AfqrLZEcsDdm79KFPq+H49g0bWIcNPAmxSD74gpAzbNX+OyhfTisV5ox0 noXVM9Si0yAKiSQh/UNhsFGWg8NFUMT0t8xa7P6gWxwvHM+1NlXHR5GVr8hEaxGp Ri/zds9Qye1wAs0= =E1aX -----END PGP SIGNATURE----- Sun Nov 24 17:49:49 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 17:49:49 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Sun Nov 24 17:49:49 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Nov 24 17:49:49 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Nov 24 17:49:49 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-VhsFjB' ==================================================================================== Sun Nov 24 17:49:50 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 sigma-align unstable /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd 1.1.3-9" as arguments. Sun Nov 24 17:49:50 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-jNdj9eet" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 17:49:50 UTC 2024 I: Downloading source for unstable/sigma-align=1.1.3-9 Reading package lists... NOTICE: 'sigma-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sigma-align.git Please use: git clone https://salsa.debian.org/med-team/sigma-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (tar) [129 kB] Get:3 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (diff) [4624 B] Fetched 136 kB in 0s (1424 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sigma-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sigma-align.git Please use: git clone https://salsa.debian.org/med-team/sigma-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (tar) [129 kB] Get:3 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (diff) [4624 B] Fetched 136 kB in 0s (1424 kB/s) Download complete and in download only mode ============================================================================= Building sigma-align in unstable on amd64 on infom01-amd64 now. Date: Sun Nov 24 17:49:50 UTC 2024 Date UTC: Sun Nov 24 17:49:50 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 05:49:50 -12 2024 I: pbuilder-time-stamp: 1732470590 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sigma-align_1.1.3-9.dsc] I: copying [./sigma-align_1.1.3.orig.tar.gz] I: copying [./sigma-align_1.1.3-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 10 12:18:32 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sigma-align_1.1.3-9.dsc: no acceptable signature found dpkg-source: info: extracting sigma-align in sigma-align-1.1.3 dpkg-source: info: unpacking sigma-align_1.1.3.orig.tar.gz dpkg-source: info: unpacking sigma-align_1.1.3-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-10-port.patch dpkg-source: info: applying fix-warnx.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d2a3b48deb3a435ca5c1da910ede9039' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='504867' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_jetD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1 --logfile b1/build.log sigma-align_1.1.3-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 35.4 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.82.2-3 [139 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.82.2-3 [145 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.40.2-11 [47.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.40.2-11 [204 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.4.6-1 [60.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.7-1 [370 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libselinux1-dev amd64 3.7-3+b1 [160 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.40.2-11 [29.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 47.1-1 [47.6 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.82.2-3 [1675 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.82.2-3 [163 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.82.2-3 [1275 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.82.2-3 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.82.2-3 [51.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.82.2-3 [52.3 kB] Fetched 35.4 MB in 1s (33.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Nov 24 17:50:52 UTC 2024. Universal Time is now: Sun Nov 24 17:50:52 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:amd64 (47.1-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.44-4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libglib2.0-data (2.82.2-3) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up uuid-dev:amd64 (2.40.2-11) ... Setting up autopoint (0.22.5-2) ... Setting up libsepol-dev:amd64 (3.7-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:amd64 (10.44-4) ... Setting up dwz (0.15-1+b1) ... 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Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libmount-dev:amd64 (2.40.2-11) ... Setting up libgio-2.0-dev:amd64 (2.82.2-3) ... Setting up girepository-tools:amd64 (2.82.2-3) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-packaging (24.2-1) ... Setting up libgio-2.0-dev-bin (2.82.2-3) ... Setting up libglib2.0-dev-bin (2.82.2-3) ... Setting up libglib2.0-dev:amd64 (2.82.2-3) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sigma-align-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sigma-align_1.1.3-9_source.changes dpkg-buildpackage: info: source package sigma-align dpkg-buildpackage: info: source version 1.1.3-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:2: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:2: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1089: AM_CONFIG_HEADER is expanded from... configure.ac:2: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:773: AM_INIT_AUTOMAKE is expanded from... configure.ac:6: the top level configure.ac:32: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:32: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:32: the top level configure.ac:56: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:56: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:56: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:6: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:9: installing './compile' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for main in -lm... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for glib.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for gettimeofday... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make all-recursive make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making all in src make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o main.o main.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o parseopts.o parseopts.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o readfasta.o readfasta.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getbgprobs.o getbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgprobs.o setbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o initseqfrags.o initseqfrags.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o commonroutines.o commonroutines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgw.o setbgw.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o printhelp.o printhelp.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o blockseq.o blockseq.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o assemble_frags_to_seqs.o assemble_frags_to_seqs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o print_routines.o print_routines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getopt_long.o getopt_long.c gcc -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sigma main.o parseopts.o readfasta.o getbgprobs.o setbgprobs.o initseqfrags.o commonroutines.o setbgw.o printhelp.o blockseq.o assemble_frags_to_seqs.o print_routines.o getopt_long.o -lglib-2.0 -lm make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making check in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sigma-align/ make -j12 install DESTDIR=/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making install in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' /usr/bin/install -c sigma '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' /usr/bin/install -c -m 644 sigma.1 '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sigma-align' in '../sigma-align_1.1.3-9_amd64.deb'. dpkg-deb: building package 'sigma-align-dbgsym' in '../sigma-align-dbgsym_1.1.3-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sigma-align_1.1.3-9_amd64.buildinfo dpkg-genchanges --build=binary -O../sigma-align_1.1.3-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/504867 and its subdirectories I: Current time: Sun Nov 24 05:51:04 -12 2024 I: pbuilder-time-stamp: 1732470664 Sun Nov 24 17:51:04 UTC 2024 I: Signing ./b1/sigma-align_1.1.3-9_amd64.buildinfo as sigma-align_1.1.3-9_amd64.buildinfo.asc Sun Nov 24 17:51:04 UTC 2024 I: Signed ./b1/sigma-align_1.1.3-9_amd64.buildinfo as ./b1/sigma-align_1.1.3-9_amd64.buildinfo.asc Sun Nov 24 17:51:04 UTC 2024 - build #1 for sigma-align/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sun Nov 24 17:51:04 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-jNdj9eet, removing. /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:51 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:49 b2 -rw------- 1 jenkins jenkins 3329 Nov 24 17:49 rbuildlog.VUCbVvg -rw-r--r-- 1 jenkins jenkins 2199 Mar 10 2024 sigma-align_1.1.3-9.dsc /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1: total 148 -rw-r--r-- 1 jenkins jenkins 48148 Nov 24 17:51 build.log -rw-r--r-- 1 jenkins jenkins 38880 Nov 24 17:51 sigma-align-dbgsym_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 4624 Nov 24 17:51 sigma-align_1.1.3-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Nov 24 17:51 sigma-align_1.1.3-9.dsc -rw-r--r-- 1 jenkins jenkins 6503 Nov 24 17:51 sigma-align_1.1.3-9_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7385 Nov 24 17:51 sigma-align_1.1.3-9_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1504 Nov 24 17:51 sigma-align_1.1.3-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 23692 Nov 24 17:51 sigma-align_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 1346 Nov 24 17:51 sigma-align_1.1.3-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2: total 0 Sun Nov 24 17:51:05 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 05:49:50 -12 2024 I: pbuilder-time-stamp: 1732470590 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sigma-align_1.1.3-9.dsc] I: copying [./sigma-align_1.1.3.orig.tar.gz] I: copying [./sigma-align_1.1.3-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 10 12:18:32 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sigma-align_1.1.3-9.dsc: no acceptable signature found dpkg-source: info: extracting sigma-align in sigma-align-1.1.3 dpkg-source: info: unpacking sigma-align_1.1.3.orig.tar.gz dpkg-source: info: unpacking sigma-align_1.1.3-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-10-port.patch dpkg-source: info: applying fix-warnx.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d2a3b48deb3a435ca5c1da910ede9039' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='504867' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_jetD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1 --logfile b1/build.log sigma-align_1.1.3-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 35.4 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.82.2-3 [139 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.82.2-3 [145 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.40.2-11 [47.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.40.2-11 [204 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.4.6-1 [60.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.7-1 [370 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libselinux1-dev amd64 3.7-3+b1 [160 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.40.2-11 [29.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 47.1-1 [47.6 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.82.2-3 [1675 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.82.2-3 [163 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.82.2-3 [1275 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.82.2-3 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.82.2-3 [51.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.82.2-3 [52.3 kB] Fetched 35.4 MB in 1s (33.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20286 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21348 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sigma-align-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sigma-align_1.1.3-9_source.changes dpkg-buildpackage: info: source package sigma-align dpkg-buildpackage: info: source version 1.1.3-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:2: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:2: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1089: AM_CONFIG_HEADER is expanded from... configure.ac:2: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:773: AM_INIT_AUTOMAKE is expanded from... configure.ac:6: the top level configure.ac:32: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:32: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:32: the top level configure.ac:56: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:56: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:56: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:6: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:9: installing './compile' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for main in -lm... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for glib.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for gettimeofday... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make all-recursive make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making all in src make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o main.o main.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o parseopts.o parseopts.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o readfasta.o readfasta.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getbgprobs.o getbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgprobs.o setbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o initseqfrags.o initseqfrags.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o commonroutines.o commonroutines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgw.o setbgw.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o printhelp.o printhelp.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o blockseq.o blockseq.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o assemble_frags_to_seqs.o assemble_frags_to_seqs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o print_routines.o print_routines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getopt_long.o getopt_long.c gcc -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sigma main.o parseopts.o readfasta.o getbgprobs.o setbgprobs.o initseqfrags.o commonroutines.o setbgw.o printhelp.o blockseq.o assemble_frags_to_seqs.o print_routines.o getopt_long.o -lglib-2.0 -lm make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making check in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sigma-align/ make -j12 install DESTDIR=/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making install in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' /usr/bin/install -c sigma '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' /usr/bin/install -c -m 644 sigma.1 '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sigma-align' in '../sigma-align_1.1.3-9_amd64.deb'. dpkg-deb: building package 'sigma-align-dbgsym' in '../sigma-align-dbgsym_1.1.3-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sigma-align_1.1.3-9_amd64.buildinfo dpkg-genchanges --build=binary -O../sigma-align_1.1.3-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/504867 and its subdirectories I: Current time: Sun Nov 24 05:51:04 -12 2024 I: pbuilder-time-stamp: 1732470664 Sun Nov 24 17:51:06 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Nov 24 17:51:06 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Nov 24 17:51:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Nov 24 17:51:06 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-qV1AgQ' ==================================================================================== Sun Dec 28 00:14:07 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 sigma-align unstable /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd 1.1.3-9" as arguments. Sun Dec 28 00:14:07 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Li1SxeHV" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 00:14:07 UTC 2025 I: Downloading source for unstable/sigma-align=1.1.3-9 Reading package lists... NOTICE: 'sigma-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sigma-align.git Please use: git clone https://salsa.debian.org/med-team/sigma-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (tar) [129 kB] Get:3 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (diff) [4624 B] Fetched 136 kB in 0s (1662 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sigma-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sigma-align.git Please use: git clone https://salsa.debian.org/med-team/sigma-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 136 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (dsc) [2199 B] Get:2 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (tar) [129 kB] Get:3 http://deb.debian.org/debian unstable/main sigma-align 1.1.3-9 (diff) [4624 B] Fetched 136 kB in 0s (1662 kB/s) Download complete and in download only mode ============================================================================= Re-Building sigma-align in unstable on amd64 on infom02-amd64 now. Date: Sun Dec 28 00:14:07 UTC 2025 Date UTC: Sun Dec 28 00:14:07 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_n1b8 + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' sigma-align = debian-installer -o sigma-align = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' sigma-align = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_n1b8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2 --logfile b2/build.log sigma-align_1.1.3-9.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 14:14:08 +14 2025 I: pbuilder-time-stamp: 1766880848 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sigma-align_1.1.3-9.dsc] I: copying [./sigma-align_1.1.3.orig.tar.gz] I: copying [./sigma-align_1.1.3-9.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 10 12:18:32 2024 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sigma-align_1.1.3-9.dsc: no acceptable signature found dpkg-source: info: extracting sigma-align in sigma-align-1.1.3 dpkg-source: info: unpacking sigma-align_1.1.3.orig.tar.gz dpkg-source: info: unpacking sigma-align_1.1.3-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-10-port.patch dpkg-source: info: applying fix-warnx.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 28 00:14 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=8165476944184b66b3cbbb28dea39baf LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3774180 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_n1b8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2 --logfile b2/build.log sigma-align_1.1.3-9.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libglib2.0-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 35.4 MB of archives. After unpacking 142 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.82.2-3 [139 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 girepository-tools amd64 2.82.2-3 [145 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 uuid-dev amd64 2.40.2-11 [47.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libblkid-dev amd64 2.40.2-11 [204 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libffi-dev amd64 3.4.6-1 [60.6 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libsepol-dev amd64 3.7-1 [370 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-4 [790 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libselinux1-dev amd64 3.7-3+b1 [160 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libmount-dev amd64 2.40.2-11 [29.0 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 47.1-1 [47.6 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.82.2-3 [1675 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.82.2-3 [163 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libglib2.0-data all 2.82.2-3 [1275 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.82.2-3 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.82.2-3 [51.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.82.2-3 [52.3 kB] Fetched 35.4 MB in 3s (13.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20286 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21348 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. 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Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package native-architecture. Preparing to unpack .../30-native-architecture_0.2.3_all.deb ... Unpacking native-architecture (0.2.3) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../31-libglib2.0-0t64_2.82.2-3_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.82.2-3) ... Selecting previously unselected package libgirepository-2.0-0:amd64. Preparing to unpack .../32-libgirepository-2.0-0_2.82.2-3_amd64.deb ... Unpacking libgirepository-2.0-0:amd64 (2.82.2-3) ... Selecting previously unselected package girepository-tools:amd64. Preparing to unpack .../33-girepository-tools_2.82.2-3_amd64.deb ... Unpacking girepository-tools:amd64 (2.82.2-3) ... Selecting previously unselected package uuid-dev:amd64. Preparing to unpack .../34-uuid-dev_2.40.2-11_amd64.deb ... Unpacking uuid-dev:amd64 (2.40.2-11) ... Selecting previously unselected package libblkid-dev:amd64. Preparing to unpack .../35-libblkid-dev_2.40.2-11_amd64.deb ... Unpacking libblkid-dev:amd64 (2.40.2-11) ... Selecting previously unselected package libffi-dev:amd64. Preparing to unpack .../36-libffi-dev_3.4.6-1_amd64.deb ... Unpacking libffi-dev:amd64 (3.4.6-1) ... Selecting previously unselected package libsepol-dev:amd64. Preparing to unpack .../37-libsepol-dev_3.7-1_amd64.deb ... Unpacking libsepol-dev:amd64 (3.7-1) ... Selecting previously unselected package libpcre2-16-0:amd64. Preparing to unpack .../38-libpcre2-16-0_10.44-4_amd64.deb ... Unpacking libpcre2-16-0:amd64 (10.44-4) ... Selecting previously unselected package libpcre2-32-0:amd64. Preparing to unpack .../39-libpcre2-32-0_10.44-4_amd64.deb ... Unpacking libpcre2-32-0:amd64 (10.44-4) ... Selecting previously unselected package libpcre2-posix3:amd64. Preparing to unpack .../40-libpcre2-posix3_10.44-4_amd64.deb ... Unpacking libpcre2-posix3:amd64 (10.44-4) ... Selecting previously unselected package libpcre2-dev:amd64. Preparing to unpack .../41-libpcre2-dev_10.44-4_amd64.deb ... Unpacking libpcre2-dev:amd64 (10.44-4) ... Selecting previously unselected package libselinux1-dev:amd64. Preparing to unpack .../42-libselinux1-dev_3.7-3+b1_amd64.deb ... Unpacking libselinux1-dev:amd64 (3.7-3+b1) ... Selecting previously unselected package libmount-dev:amd64. Preparing to unpack .../43-libmount-dev_2.40.2-11_amd64.deb ... Unpacking libmount-dev:amd64 (2.40.2-11) ... Selecting previously unselected package libsysprof-capture-4-dev:amd64. Preparing to unpack .../44-libsysprof-capture-4-dev_47.1-1_amd64.deb ... Unpacking libsysprof-capture-4-dev:amd64 (47.1-1) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../45-libpkgconf3_1.8.1-4_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../46-pkgconf-bin_1.8.1-4_amd64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../47-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../48-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... 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Unpacking libglib2.0-dev-bin (2.82.2-3) ... Selecting previously unselected package libglib2.0-dev:amd64. Preparing to unpack .../55-libglib2.0-dev_2.82.2-3_amd64.deb ... Unpacking libglib2.0-dev:amd64 (2.82.2-3) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up native-architecture (0.2.3) ... Setting up libicu72:amd64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libffi-dev:amd64 (3.4.6-1) ... Setting up libpcre2-16-0:amd64 (10.44-4) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 28 00:15:21 UTC 2025. Universal Time is now: Sun Dec 28 00:15:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:amd64 (47.1-1) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:amd64 (10.44-4) ... Setting up libglib2.0-0t64:amd64 (2.82.2-3) ... No schema files found: doing nothing. Setting up libglib2.0-data (2.82.2-3) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up uuid-dev:amd64 (2.40.2-11) ... Setting up autopoint (0.22.5-2) ... Setting up libsepol-dev:amd64 (3.7-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:amd64 (10.44-4) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libblkid-dev:amd64 (2.40.2-11) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:amd64 (10.44-4) ... Setting up libtool (2.4.7-8) ... Setting up libgirepository-2.0-0:amd64 (2.82.2-3) ... Setting up libselinux1-dev:amd64 (3.7-3+b1) ... Setting up libglib2.0-bin (2.82.2-3) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libmount-dev:amd64 (2.40.2-11) ... Setting up libgio-2.0-dev:amd64 (2.82.2-3) ... Setting up girepository-tools:amd64 (2.82.2-3) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-packaging (24.2-1) ... Setting up libgio-2.0-dev-bin (2.82.2-3) ... Setting up libglib2.0-dev-bin (2.82.2-3) ... Setting up libglib2.0-dev:amd64 (2.82.2-3) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/sigma-align-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sigma-align_1.1.3-9_source.changes dpkg-buildpackage: info: source package sigma-align dpkg-buildpackage: info: source version 1.1.3-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:2: warning: 'AM_CONFIG_HEADER': this macro is obsolete. configure.ac:2: You should use the 'AC_CONFIG_HEADERS' macro instead. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:1089: AM_CONFIG_HEADER is expanded from... configure.ac:2: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. ./lib/autoconf/general.m4:2434: AC_DIAGNOSE is expanded from... aclocal.m4:773: AM_INIT_AUTOMAKE is expanded from... configure.ac:6: the top level configure.ac:32: warning: The macro 'AC_HEADER_STDC' is obsolete. configure.ac:32: You should run autoupdate. ./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from... configure.ac:32: the top level configure.ac:56: warning: The macro 'AC_HEADER_TIME' is obsolete. configure.ac:56: You should run autoupdate. ./lib/autoconf/headers.m4:702: AC_HEADER_TIME is expanded from... configure.ac:56: the top level configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:6: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:9: installing './compile' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for main in -lm... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/time.h... yes checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/time.h... (cached) yes checking for glib.h... yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for GNU libc compatible malloc... yes checking for gettimeofday... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make all-recursive make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making all in src make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o main.o main.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o parseopts.o parseopts.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o readfasta.o readfasta.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getbgprobs.o getbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgprobs.o setbgprobs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o initseqfrags.o initseqfrags.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o commonroutines.o commonroutines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o setbgw.o setbgw.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o printhelp.o printhelp.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o blockseq.o blockseq.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o assemble_frags_to_seqs.o assemble_frags_to_seqs.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o print_routines.o print_routines.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o getopt_long.o getopt_long.c gcc -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sigma main.o parseopts.o readfasta.o getbgprobs.o setbgprobs.o initseqfrags.o commonroutines.o setbgw.o printhelp.o blockseq.o assemble_frags_to_seqs.o print_routines.o getopt_long.o -lglib-2.0 -lm make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making check in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/sigma-align/ make -j12 install DESTDIR=/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' Making install in src make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' /usr/bin/install -c sigma '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/bin' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' /usr/bin/install -c -m 644 sigma.1 '/build/reproducible-path/sigma-align-1.1.3/debian/sigma-align/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sigma-align' in '../sigma-align_1.1.3-9_amd64.deb'. dpkg-deb: building package 'sigma-align-dbgsym' in '../sigma-align-dbgsym_1.1.3-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../sigma-align_1.1.3-9_amd64.buildinfo dpkg-genchanges --build=binary -O../sigma-align_1.1.3-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3774180 and its subdirectories I: Current time: Sun Dec 28 14:15:51 +14 2025 I: pbuilder-time-stamp: 1766880951 + false + set +x Sun Dec 28 00:15:51 UTC 2025 I: Signing ./b2/sigma-align_1.1.3-9_amd64.buildinfo as sigma-align_1.1.3-9_amd64.buildinfo.asc Sun Dec 28 00:15:51 UTC 2025 I: Signed ./b2/sigma-align_1.1.3-9_amd64.buildinfo as ./b2/sigma-align_1.1.3-9_amd64.buildinfo.asc Sun Dec 28 00:15:51 UTC 2025 - build #2 for sigma-align/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Dec 28 00:15:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Li1SxeHV, removing. /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd: total 68 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:51 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 17:52 b2 -rw------- 1 jenkins jenkins 51766 Nov 24 17:51 rbuildlog.VUCbVvg -rw-r--r-- 1 jenkins jenkins 2199 Mar 10 2024 sigma-align_1.1.3-9.dsc /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1: total 148 -rw-r--r-- 1 jenkins jenkins 48148 Nov 24 17:51 build.log -rw-r--r-- 1 jenkins jenkins 38880 Nov 24 17:51 sigma-align-dbgsym_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 4624 Nov 24 17:51 sigma-align_1.1.3-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Nov 24 17:51 sigma-align_1.1.3-9.dsc -rw-r--r-- 1 jenkins jenkins 6503 Nov 24 17:51 sigma-align_1.1.3-9_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7385 Nov 24 17:51 sigma-align_1.1.3-9_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1504 Nov 24 17:51 sigma-align_1.1.3-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 23692 Nov 24 17:51 sigma-align_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 1346 Nov 24 17:51 sigma-align_1.1.3-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2: total 156 -rw-r--r-- 1 jenkins jenkins 50003 Nov 24 17:52 build.log -rw-r--r-- 1 jenkins jenkins 38880 Nov 24 17:52 sigma-align-dbgsym_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 4624 Nov 24 17:52 sigma-align_1.1.3-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2199 Nov 24 17:52 sigma-align_1.1.3-9.dsc -rw-r--r-- 1 jenkins jenkins 6506 Nov 24 17:52 sigma-align_1.1.3-9_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 7388 Nov 24 17:52 sigma-align_1.1.3-9_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1504 Nov 24 17:52 sigma-align_1.1.3-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 23692 Nov 24 17:52 sigma-align_1.1.3-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 1346 Nov 24 17:52 sigma-align_1.1.3-9_source.changes Sun Nov 24 17:52:52 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Nov 24 17:52:53 UTC 2024 I: sigma-align_1.1.3-9_amd64.changes: Format: 1.8 Date: Sun, 10 Mar 2024 13:09:51 +0100 Source: sigma-align Binary: sigma-align sigma-align-dbgsym Architecture: amd64 Version: 1.1.3-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: sigma-align - Simple greedy multiple alignment of non-coding DNA sequences Closes: 1065800 Changes: sigma-align (1.1.3-9) unstable; urgency=medium . * Team upload. * fix-warnx.patch: new: fix build failure. (Closes: #1065800) * Update standards version to 4.6.2, no changes needed. Checksums-Sha1: 4db4fe64bc90a561467af323c8276fb5c120150a 38880 sigma-align-dbgsym_1.1.3-9_amd64.deb 70d9af1a552f25ed5732e00ac9ec795882b8908e 6503 sigma-align_1.1.3-9_amd64.buildinfo 3285e19bcf79c0250f28fa786e9e56606f5c3184 23692 sigma-align_1.1.3-9_amd64.deb Checksums-Sha256: 8e6912bc2fadeb784ade9ea9c7109a26e7995af5763ef2b3ae332921def3a858 38880 sigma-align-dbgsym_1.1.3-9_amd64.deb 62b870e5904d919e987b4c6ee23856f9f888de3937f5e211cf21257fdc790f47 6503 sigma-align_1.1.3-9_amd64.buildinfo 7503b2b393ab88a6afaefa9b0a46a9d64c0189817974977b40e9ba3416dd9ea3 23692 sigma-align_1.1.3-9_amd64.deb Files: 55040584c382058dd9c6d6d6e71a6706 38880 debug optional sigma-align-dbgsym_1.1.3-9_amd64.deb 7a39dd0e22aa1348e1fb19fb5e2c2f04 6503 science optional sigma-align_1.1.3-9_amd64.buildinfo 04ff6736702aeb09e10b16e78bd6d9cf 23692 science optional sigma-align_1.1.3-9_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/sigma-align_1.1.3-9.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/sigma-align_1.1.3-9.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/sigma-align_1.1.3-9.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/sigma-align_1.1.3-9.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/sigma-align_1.1.3-9_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/sigma-align_1.1.3-9.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 17:51:05.454952854 +0000 +++ b2/build.log 2024-11-24 17:52:52.598129374 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 24 05:49:50 -12 2024 -I: pbuilder-time-stamp: 1732470590 +I: Current time: Sun Dec 28 14:14:08 +14 2025 +I: pbuilder-time-stamp: 1766880848 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying fix-warnx.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 28 00:14 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='d2a3b48deb3a435ca5c1da910ede9039' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='504867' - PS1='# ' - PS2='> ' + INVOCATION_ID=8165476944184b66b3cbbb28dea39baf + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3774180 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_jetD --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1 --logfile b1/build.log sigma-align_1.1.3-9.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/pbuilderrc_n1b8 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2 --logfile b2/build.log sigma-align_1.1.3-9.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-27-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.115-1 (2024-11-01) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/504867/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -188,7 +220,7 @@ Get: 75 http://deb.debian.org/debian unstable/main amd64 libglib2.0-bin amd64 2.82.2-3 [127 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.82.2-3 [51.5 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libglib2.0-dev amd64 2.82.2-3 [52.3 kB] -Fetched 35.4 MB in 1s (33.2 MB/s) +Fetched 35.4 MB in 3s (13.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19966 files and directories currently installed.) @@ -456,8 +488,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 24 17:50:52 UTC 2024. -Universal Time is now: Sun Nov 24 17:50:52 UTC 2024. +Local time is now: Sun Dec 28 00:15:21 UTC 2025. +Universal Time is now: Sun Dec 28 00:15:21 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:amd64 (47.1-1) ... @@ -526,7 +558,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sigma-align-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sigma-align_1.1.3-9_source.changes +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sigma-align-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sigma-align_1.1.3-9_source.changes dpkg-buildpackage: info: source package sigma-align dpkg-buildpackage: info: source version 1.1.3-9 dpkg-buildpackage: info: source distribution unstable @@ -636,7 +672,6 @@ gcc -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DDEBUG -O2 -g -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sigma-align-1.1.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -o sigma main.o parseopts.o readfasta.o getbgprobs.o setbgprobs.o initseqfrags.o commonroutines.o setbgw.o printhelp.o blockseq.o assemble_frags_to_seqs.o print_routines.o getopt_long.o -lglib-2.0 -lm make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[3]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' -make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' @@ -648,7 +683,6 @@ make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3/src' make[2]: Entering directory '/build/reproducible-path/sigma-align-1.1.3' -make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' make[1]: Leaving directory '/build/reproducible-path/sigma-align-1.1.3' create-stamp debian/debhelper-build-stamp @@ -698,12 +732,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3774180/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/504867 and its subdirectories -I: Current time: Sun Nov 24 05:51:04 -12 2024 -I: pbuilder-time-stamp: 1732470664 +I: removing directory /srv/workspace/pbuilder/3774180 and its subdirectories +I: Current time: Sun Dec 28 14:15:51 +14 2025 +I: pbuilder-time-stamp: 1766880951 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/sigma-align_1.1.3-9.diff: 67.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/sigma-align_1.1.3-9.diff.gz b2/build.log: 80.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.3% -- replaced with stdout Sun Nov 24 17:52:55 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_sigma-align_unstable_amd64_1732470775 + touch /var/log/reproducible-builds/diffoscope_stamp_sigma-align_unstable_amd64_1732470775 + RESULT=0 + systemd-run '--description=diffoscope on sigma-align/1.1.3-9 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_35-35638 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd --run-session -c jenkins-reproducible-unstable-diffoscope-2aaed56b-f59e-46a1-8638-ed1549f4ca9d -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/dbd-tmp-E7EBrXy ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1/sigma-align_1.1.3-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2/sigma-align_1.1.3-9_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_35-35638.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/sigma-align_1.1.3-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b1/sigma-align_1.1.3-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.BYbXFQZd/b2/sigma-align_1.1.3-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.337s) 0.337s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 670ms CPU time consumed: 671ms _ _ _ ___(_) __ _ _ __ ___ __ _ __ _| (_) __ _ _ __ / __| |/ _` | '_ ` _ \ / _` |_____ / _` | | |/ _` | '_ \ \__ \ | (_| | | | | | | (_| |_____| (_| | | | (_| | | | | |___/_|\__, |_| |_| |_|\__,_| \__,_|_|_|\__, |_| |_| |___/ |___/ Sun Nov 24 18:07:43 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 18:07:43 UTC 2024 I: sigma-align from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 18:07:45] INFO: Starting at 2024-11-24 18:07:45.776809 [2024-11-24 18:07:46] INFO: Generating the pages of 1 package(s) [2024-11-24 18:07:47] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/sigma-align didn't produce a buildlog, even though it has been built. [2024-11-24 18:07:48] INFO: Finished at 2024-11-24 18:07:48.979440, took: 0:00:03.202644 Sun Nov 24 18:07:49 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sigma-align.html Sun Nov 24 18:07:49 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 18:07:49 UTC 2024 I: Submitting 8.0K b1/sigma-align_1.1.3-9_amd64.buildinfo.asc https://buildinfo.debian.net/70d9af1a552f25ed5732e00ac9ec795882b8908e/sigma-align_1.1.3-9_amd64 Sun Nov 24 18:07:56 UTC 2024 I: Submitting 8.0K b2/sigma-align_1.1.3-9_amd64.buildinfo.asc https://buildinfo.debian.net/8659c1a3fb0e2bd02b0a298ffa7cc1c6bfc3128e/sigma-align_1.1.3-9_amd64 Sun Nov 24 18:08:15 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 18:08:15 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 18:08:15 UTC 2024 I: Removing signed sigma-align_1.1.3-9_amd64.buildinfo.asc files: removed './b1/sigma-align_1.1.3-9_amd64.buildinfo.asc' removed './b2/sigma-align_1.1.3-9_amd64.buildinfo.asc' 1732471695 amd64 unstable sigma-align Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/sigma-align_1.1.3-9.rbuild.log: 78.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/sigma-align_1.1.3-9.rbuild.log.gz [2024-11-24 18:08:15] INFO: Starting at 2024-11-24 18:08:15.953913 [2024-11-24 18:08:16] INFO: Generating the pages of 1 package(s) [2024-11-24 18:08:16] INFO: Finished at 2024-11-24 18:08:16.535706, took: 0:00:00.581803 All cleanup done. Sun Nov 24 18:08:16 UTC 2024 - total duration: 0h 18m 16s. Sun Nov 24 18:08:16 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-5E4r33GK, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 18min 48.975s CPU time consumed: 9.068s