Running as unit: rb-build-amd64_35-78097.service; invocation ID: 378b8f59321a418cbbd3e391bad9898f ==================================================================================== Sun Sep 14 21:56:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_35) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Sun Sep 14 21:56:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-u2OXHCIw" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 21:56:31 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Sep 14 21:56:31 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-GlGacR' Sun Sep 14 21:56:31 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Sep 14 21:56:31 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-J85pN2' ok, let's check if ea-utils is building anywhere yet… ok, ea-utils is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ea-utils in forky on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Sun Sep 14 21:56:35 UTC 2025 I: starting to build ea-utils/forky/amd64 on jenkins on '2025-09-14 21:56' Sun Sep 14 21:56:35 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_35/78097/console.log 1757886995 amd64 forky ea-utils Sun Sep 14 21:56:35 UTC 2025 I: Downloading source for forky/ea-utils=1.1.2+dfsg-9 --2025-09-14 21:56:36-- http://deb.debian.org/debian/pool/main/e/ea-utils/ea-utils_1.1.2%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2098 (2.0K) [text/prs.lines.tag] Saving to: ‘ea-utils_1.1.2+dfsg-9.dsc’ 0K .. 100% 212M=0s 2025-09-14 21:56:36 (212 MB/s) - ‘ea-utils_1.1.2+dfsg-9.dsc’ saved [2098/2098] --2025-09-14 21:56:36-- http://deb.debian.org/debian/pool/main/e/ea-utils/ea-utils_1.1.2%2bdfsg-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2098 (2.0K) [text/prs.lines.tag] Saving to: ‘ea-utils_1.1.2+dfsg-9.dsc’ 0K .. 100% 212M=0s 2025-09-14 21:56:36 (212 MB/s) - ‘ea-utils_1.1.2+dfsg-9.dsc’ saved [2098/2098] Sun Sep 14 21:56:36 UTC 2025 I: ea-utils_1.1.2+dfsg-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ea-utils Binary: ea-utils Architecture: any Version: 1.1.2+dfsg-9 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://expressionanalysis.github.io/ea-utils/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/ea-utils Vcs-Git: https://salsa.debian.org/med-team/ea-utils.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev Package-List: ea-utils deb science optional arch=any Checksums-Sha1: e35e9d1fb9f1320775c14069f561568186a2050c 136824 ea-utils_1.1.2+dfsg.orig.tar.xz e2589d9bb18a6c20735ebecfa112a2b672728955 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz Checksums-Sha256: d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f 136824 ea-utils_1.1.2+dfsg.orig.tar.xz a3900019c7f63cb3d585438d920948123504ba9a0f2a8197a062848a7adf8213 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz Files: 167255bd7a4c4910eb2b12b97afca4dc 136824 ea-utils_1.1.2+dfsg.orig.tar.xz a2615385ce5fee70026db58441c2c8e0 32412 ea-utils_1.1.2+dfsg-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmFsfXwUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdomFg//bavLLcau5wl69ASK4gUmk5U2jhGQ FRaneSeHd+uc9ebRroUS4+1Y7Lx9MWVLLw0TJs4HgsWhKA9QonrtR94ghNx/zWFe h2VoxFZKU8t24OmzzsF2+UlDMdC/bknaG4t9Z99G4P3Mba1yg1qA44CRpNLPjIBz +otxsmAAtAwUQryaELp4CY2yhdOX7APb0f8OSGCT+OeTSBrTP8ZqFCmJ58CwBu7F pFKssGtVPAkn9n9jgwmxE/s08/99oKWQ3pPmkA1Pxc3x7UMuPt2UyIMd+jCCauel 6MhnFHEskz9QVLzAQerfIo3MwLMTM+ofFGEo4Wvn/ZmqL+e3mrKI5cGNd0m2LSLu YRnOYG6zjiAPIawp8X2VnqKH1JApKgnJjn3LvAbNPTvADw0ixFgHDCFKqPpFTJb+ KPK+ovNDXmC8ruhGYcNvVkmD7oIi0F5RoYZOwiMsmQ9MUOA0TZefUp0KDDA3uoVD hLOnn1lVlyjkSyLI3CzS7gsIyrkHsicDPlkNAdGcIDISeNNMM8TfwTfNrHFB4LbJ hEDpHe86prqabnE3hpFgTDLQB045gdkl4oTX4339QHuVPJ61PuT1F2CVEFatHenr mTrmA/cut7bi8Qf2ywLPnk7KrzptY9Bp1Zn6IhBPAr9cvWsZKPV+0ChWSs3eFXk4 pK7wTjFfR/RC3Kk= =cvna -----END PGP SIGNATURE----- Sun Sep 14 21:56:36 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 21:56:36 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Sun Sep 14 21:56:36 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Sep 14 21:56:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Sep 14 21:56:36 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-M0jUob' ==================================================================================== Sun Sep 14 21:56:36 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 ea-utils forky /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU 1.1.2+dfsg-9" as arguments. Sun Sep 14 21:56:36 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-EzMpo3If" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 21:56:36 UTC 2025 I: Downloading source for forky/ea-utils=1.1.2+dfsg-9 Reading package lists... NOTICE: 'ea-utils' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ea-utils.git Please use: git clone https://salsa.debian.org/med-team/ea-utils.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (dsc) [2098 B] Get:2 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (tar) [137 kB] Get:3 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (diff) [32.4 kB] Fetched 171 kB in 0s (657 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ea-utils' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ea-utils.git Please use: git clone https://salsa.debian.org/med-team/ea-utils.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (dsc) [2098 B] Get:2 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (tar) [137 kB] Get:3 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (diff) [32.4 kB] Fetched 171 kB in 0s (657 kB/s) Download complete and in download only mode ============================================================================= Building ea-utils in forky on amd64 on infom01-amd64 now. Date: Sun Sep 14 21:56:37 UTC 2025 Date UTC: Sun Sep 14 21:56:37 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 09:56:37 -12 2025 I: pbuilder-time-stamp: 1757886997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-9.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ea-utils_1.1.2+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying arm64.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0e7bee255c44452993365402deedc6ee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2759097' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_XnDg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsparsehash-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After unpacking 57.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Fetched 14.9 MB in 1s (26.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... 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Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgsl-dev (2.8+dfsg-5.1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-multx.c: In function 'int main(int, char**)': fastq-multx.c:292:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 292 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:293:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:516:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 516 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:517:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} | ^ | return *this; varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:33: warning: too many arguments for format [-Wformat-extra-args] 1584 | fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); | ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j12 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb'. dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2759097 and its subdirectories I: Current time: Sun Sep 14 09:57:53 -12 2025 I: pbuilder-time-stamp: 1757887073 Sun Sep 14 21:57:53 UTC 2025 I: Signing ./b1/ea-utils_1.1.2+dfsg-9_amd64.buildinfo as ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc Sun Sep 14 21:57:53 UTC 2025 I: Signed ./b1/ea-utils_1.1.2+dfsg-9_amd64.buildinfo as ./b1/ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc Sun Sep 14 21:57:53 UTC 2025 - build #1 for ea-utils/forky/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sun Sep 14 21:57:53 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-EzMpo3If, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:56 b2 -rw-rw-r-- 1 jenkins jenkins 2098 Oct 17 2021 ea-utils_1.1.2+dfsg-9.dsc -rw------- 1 jenkins jenkins 3228 Sep 14 21:56 rbuildlog.ql7Szt3 /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1: total 1900 -rw-r--r-- 1 jenkins jenkins 31211 Sep 14 21:57 build.log -rw-r--r-- 1 jenkins jenkins 1594128 Sep 14 21:57 ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 32412 Sep 14 21:57 ea-utils_1.1.2+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2098 Sep 14 21:57 ea-utils_1.1.2+dfsg-9.dsc -rw-r--r-- 1 jenkins jenkins 5107 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5989 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1469 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 251068 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 1312 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2: total 0 Sun Sep 14 21:57:54 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 09:56:37 -12 2025 I: pbuilder-time-stamp: 1757886997 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-9.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ea-utils_1.1.2+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying arm64.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0e7bee255c44452993365402deedc6ee' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2759097' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_XnDg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsparsehash-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After unpacking 57.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Fetched 14.9 MB in 1s (26.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../21-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../23-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../24-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../29-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libbam-dev. Preparing to unpack .../30-libbam-dev_0.1.19+dfsg-6_amd64.deb ... Unpacking libbam-dev (0.1.19+dfsg-6) ... Selecting previously unselected package libgslcblas0:amd64. Preparing to unpack .../31-libgslcblas0_2.8+dfsg-5.1_amd64.deb ... Unpacking libgslcblas0:amd64 (2.8+dfsg-5.1) ... Selecting previously unselected package libgsl28:amd64. Preparing to unpack .../32-libgsl28_2.8+dfsg-5.1_amd64.deb ... Unpacking libgsl28:amd64 (2.8+dfsg-5.1) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../33-libgsl-dev_2.8+dfsg-5.1_amd64.deb ... Unpacking libgsl-dev (2.8+dfsg-5.1) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../34-libsparsehash-dev_2.0.3-2_all.deb ... Unpacking libsparsehash-dev (2.0.3-2) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-2) ... Setting up libgslcblas0:amd64 (2.8+dfsg-5.1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgsl-dev (2.8+dfsg-5.1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-multx.c: In function 'int main(int, char**)': fastq-multx.c:292:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 292 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:293:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:516:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 516 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:517:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} | ^ | return *this; varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:33: warning: too many arguments for format [-Wformat-extra-args] 1584 | fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); | ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j12 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb'. dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2759097 and its subdirectories I: Current time: Sun Sep 14 09:57:53 -12 2025 I: pbuilder-time-stamp: 1757887073 Sun Sep 14 21:57:54 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Sep 14 21:57:54 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Sep 14 21:57:54 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Sep 14 21:57:54 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-XNebuA' ==================================================================================== Sun Oct 18 04:20:55 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 ea-utils forky /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU 1.1.2+dfsg-9" as arguments. Sun Oct 18 04:20:55 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-j4ZCSYKa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 04:20:55 UTC 2026 I: Downloading source for forky/ea-utils=1.1.2+dfsg-9 Reading package lists... NOTICE: 'ea-utils' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ea-utils.git Please use: git clone https://salsa.debian.org/med-team/ea-utils.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (dsc) [2098 B] Get:2 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (tar) [137 kB] Get:3 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (diff) [32.4 kB] Fetched 171 kB in 0s (1718 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ea-utils' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ea-utils.git Please use: git clone https://salsa.debian.org/med-team/ea-utils.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 171 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (dsc) [2098 B] Get:2 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (tar) [137 kB] Get:3 http://deb.debian.org/debian forky/main ea-utils 1.1.2+dfsg-9 (diff) [32.4 kB] Fetched 171 kB in 0s (1718 kB/s) Download complete and in download only mode ============================================================================= Re-Building ea-utils in forky on amd64 on infom02-amd64 now. Date: Sun Oct 18 04:20:55 UTC 2026 Date UTC: Sun Oct 18 04:20:55 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_PPqH + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' ea-utils = debian-installer -o ea-utils = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' ea-utils = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_PPqH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-9.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 18:20:55 +14 2026 I: pbuilder-time-stamp: 1792297255 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-9.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ea-utils_1.1.2+dfsg-9.dsc: no acceptable signature found dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying arm64.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 04:21 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=46394511b0694cf89e5e284ebdf750e0 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1065838 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_PPqH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-9.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev; however: Package libsparsehash-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsparsehash-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 35 newly installed, 0 to remove and 0 not upgraded. Need to get 14.9 MB of archives. After unpacking 57.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 22 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libbam-dev amd64 0.1.19+dfsg-6 [118 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libgslcblas0 amd64 2.8+dfsg-5.1 [137 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Fetched 14.9 MB in 0s (54.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. 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Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libgsl28:amd64 (2.8+dfsg-5.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgsl-dev (2.8+dfsg-5.1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbam-dev (0.1.19+dfsg-6) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': fastq-lib.cpp:284:20: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 284 | register int c = getc (stream); | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-multx.c: In function 'int main(int, char**)': fastq-multx.c:292:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 292 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:293:40: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 293 | getline(&q, &nq, fin[i]); | ~~~~~~~^~~~~~~~~~~~~~~~~ fastq-multx.c:516:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 516 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:517:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 517 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:56: warning: too many arguments for format [-Wformat-extra-args] 849 | fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } | ^ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] 128 | vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} | ^ | return *this; varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:33: warning: too many arguments for format [-Wformat-extra-args] 1584 | fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); | ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j16 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb'. dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-9_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.buildinfo dpkg-genchanges --build=binary -O../ea-utils_1.1.2+dfsg-9_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1065838 and its subdirectories I: Current time: Sun Oct 18 18:22:11 +14 2026 I: pbuilder-time-stamp: 1792297331 + false + set +x Sun Oct 18 04:22:11 UTC 2026 I: Signing ./b2/ea-utils_1.1.2+dfsg-9_amd64.buildinfo as ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc Sun Oct 18 04:22:11 UTC 2026 I: Signed ./b2/ea-utils_1.1.2+dfsg-9_amd64.buildinfo as ./b2/ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc Sun Oct 18 04:22:11 UTC 2026 - build #2 for ea-utils/forky/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 04:22:11 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-j4ZCSYKa, removing. /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU: total 48 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 21:59 b2 -rw-rw-r-- 1 jenkins jenkins 2098 Oct 17 2021 ea-utils_1.1.2+dfsg-9.dsc -rw------- 1 jenkins jenkins 34728 Sep 14 21:57 rbuildlog.ql7Szt3 /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1: total 1908 -rw-r--r-- 1 jenkins jenkins 31211 Sep 14 21:57 build.log -rw-r--r-- 1 jenkins jenkins 1594128 Sep 14 21:57 ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 32412 Sep 14 21:57 ea-utils_1.1.2+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2098 Sep 14 21:57 ea-utils_1.1.2+dfsg-9.dsc -rw-r--r-- 1 jenkins jenkins 5107 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5989 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1469 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 251068 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 1312 Sep 14 21:57 ea-utils_1.1.2+dfsg-9_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2: total 1904 -rw-rw-r-- 1 jenkins jenkins 33132 Sep 14 21:59 build.log -rw-r--r-- 1 jenkins jenkins 1594128 Sep 14 21:59 ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb -rw-r--r-- 1 jenkins jenkins 32412 Sep 14 21:59 ea-utils_1.1.2+dfsg-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2098 Sep 14 21:59 ea-utils_1.1.2+dfsg-9.dsc -rw-rw-r-- 1 jenkins jenkins 5101 Sep 14 21:59 ea-utils_1.1.2+dfsg-9_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5983 Sep 14 21:59 ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1469 Sep 14 21:59 ea-utils_1.1.2+dfsg-9_amd64.changes -rw-r--r-- 1 jenkins jenkins 251068 Sep 14 21:59 ea-utils_1.1.2+dfsg-9_amd64.deb -rw-rw-r-- 1 jenkins jenkins 1312 Sep 14 21:59 ea-utils_1.1.2+dfsg-9_source.changes Sun Sep 14 21:59:11 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Sep 14 21:59:12 UTC 2025 I: ea-utils_1.1.2+dfsg-9_amd64.changes: Format: 1.8 Date: Sun, 17 Oct 2021 21:37:07 +0200 Source: ea-utils Binary: ea-utils ea-utils-dbgsym Architecture: amd64 Version: 1.1.2+dfsg-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ea-utils - command-line tools for processing biological sequencing data Closes: 984043 Changes: ea-utils (1.1.2+dfsg-9) unstable; urgency=medium . * Team upload. * Add gcc11.patch to fix ftbfs with gcc 11. (Closes: #984043) Checksums-Sha1: 5d7bf043c99585b2ed95d7b2808b5e2e8c033a71 1594128 ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb 976a6c3612a2381b0871199b65800419bf5b2e4d 5107 ea-utils_1.1.2+dfsg-9_amd64.buildinfo c1526e0e2639008e39eca032bc80965fe4be565e 251068 ea-utils_1.1.2+dfsg-9_amd64.deb Checksums-Sha256: e4b7a609b546fe9626f29c87795b64c505522c0e5b8992cef6b69550087c7013 1594128 ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb d190dbb0ef8e93abf09c8bec856956ab53f1402be3be2110488ded80924e51ae 5107 ea-utils_1.1.2+dfsg-9_amd64.buildinfo a32c44c0875e436dcca926a1fe82112a22e24b53e094c39b9734281a8acacf8b 251068 ea-utils_1.1.2+dfsg-9_amd64.deb Files: 2dc55949b091210e6506ab646e24d342 1594128 debug optional ea-utils-dbgsym_1.1.2+dfsg-9_amd64.deb e8be754465a68e460b9d8235d52d84bd 5107 science optional ea-utils_1.1.2+dfsg-9_amd64.buildinfo decd36cb02f4de83bb7473f980cb032d 251068 science optional ea-utils_1.1.2+dfsg-9_amd64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ea-utils_1.1.2+dfsg-9.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ea-utils_1.1.2+dfsg-9.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/ea-utils_1.1.2+dfsg-9.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/amd64/ea-utils_1.1.2+dfsg-9.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/amd64/ea-utils_1.1.2+dfsg-9_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/ea-utils_1.1.2+dfsg-9.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 21:57:53.895881640 +0000 +++ b2/build.log 2025-09-14 21:59:11.663977795 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 09:56:37 -12 2025 -I: pbuilder-time-stamp: 1757886997 +I: Current time: Sun Oct 18 18:20:55 +14 2026 +I: pbuilder-time-stamp: 1792297255 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 04:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='0e7bee255c44452993365402deedc6ee' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2759097' - PS1='# ' - PS2='> ' + INVOCATION_ID=46394511b0694cf89e5e284ebdf750e0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1065838 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_XnDg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-9.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/pbuilderrc_PPqH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2 --logfile b2/build.log ea-utils_1.1.2+dfsg-9.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2759097/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -153,7 +185,7 @@ Get: 33 http://deb.debian.org/debian forky/main amd64 libgsl28 amd64 2.8+dfsg-5.1 [1068 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libgsl-dev amd64 2.8+dfsg-5.1 [1336 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] -Fetched 14.9 MB in 1s (26.7 MB/s) +Fetched 14.9 MB in 0s (54.8 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -308,7 +340,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ea-utils_1.1.2+dfsg-9_source.changes dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-9 dpkg-buildpackage: info: source distribution unstable @@ -318,7 +354,7 @@ debian/rules clean dh clean dh_auto_clean - make -j12 clean + make -j16 clean make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' @@ -329,20 +365,20 @@ dh_autoreconf dh_auto_configure dh_auto_build - make -j12 "INSTALL=install --strip-program=true" + make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now -g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-lib.cpp: In function 'int getstr(char**, size_t*, FILE*, char, int)': @@ -396,6 +432,7 @@ fastq-multx.c:554:32: warning: ignoring return value of '__ssize_t getline(char**, size_t*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 554 | getline(&q, &nq, gin); | ~~~~~~~^~~~~~~~~~~~~~ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:65: warning: too many arguments for format [-Wformat-extra-args] 633 | fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); @@ -407,7 +444,6 @@ fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] 1657 | b=atoi(strchr(optarg, ',')+1); | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:9: warning: control reaches end of non-void function [-Wreturn-type] 140 | } @@ -429,7 +465,7 @@ debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' - make -j12 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr + make -j16 install DESTDIR=/build/reproducible-path/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/reproducible-path/ea-utils-1.1.2+dfsg' mkdir -p /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/reproducible-path/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper @@ -475,12 +511,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1065838/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2759097 and its subdirectories -I: Current time: Sun Sep 14 09:57:53 -12 2025 -I: pbuilder-time-stamp: 1757887073 +I: removing directory /srv/workspace/pbuilder/1065838 and its subdirectories +I: Current time: Sun Oct 18 18:22:11 +14 2026 +I: pbuilder-time-stamp: 1792297331 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/ea-utils_1.1.2+dfsg-9.diff: 73.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/amd64/ea-utils_1.1.2+dfsg-9.diff.gz b2/build.log: 78.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.5% -- replaced with stdout Sun Sep 14 21:59:12 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ea-utils_forky_amd64_1757887152 + touch /var/log/reproducible-builds/diffoscope_stamp_ea-utils_forky_amd64_1757887152 + RESULT=0 + systemd-run '--description=diffoscope on ea-utils/1.1.2+dfsg-9 in forky/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_35-78097 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU --run-session -c jenkins-reproducible-forky-diffoscope-206bc3c1-6e75-4ac1-acd2-0110e1c9c466 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/dbd-tmp-81u9Dk8 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1/ea-utils_1.1.2+dfsg-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2/ea-utils_1.1.2+dfsg-9_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_35-78097.service; invocation ID: f20c7e89304342bab304a1f7fec966b4 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/ea-utils_1.1.2+dfsg-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b1/ea-utils_1.1.2+dfsg-9_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.Gp0FIQuU/b2/ea-utils_1.1.2+dfsg-9_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 215ms CPU time consumed: 168ms Memory peak: 17.1M (swap: 0B) _ _ _ ___ __ _ _ _| |_(_) |___ / _ \/ _` |_____| | | | __| | / __| | __/ (_| |_____| |_| | |_| | \__ \ \___|\__,_| \__,_|\__|_|_|___/ Sun Sep 14 21:59:13 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 21:59:13 UTC 2025 I: ea-utils from forky built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-14 21:59:13] INFO: Starting at 2025-09-14 21:59:13.677640 [2025-09-14 21:59:13] INFO: Generating the pages of 1 package(s) [2025-09-14 21:59:13] CRITICAL: https://tests.reproducible-builds.org/debian/forky/amd64/ea-utils didn't produce a buildlog, even though it has been built. [2025-09-14 21:59:13] INFO: Finished at 2025-09-14 21:59:13.944075, took: 0:00:00.266439 Sun Sep 14 21:59:14 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/amd64/ea-utils.html Sun Sep 14 21:59:14 UTC 2025 I: Removing signed ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc files: removed './b1/ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc' removed './b2/ea-utils_1.1.2+dfsg-9_amd64.buildinfo.asc' 1757887154 amd64 forky ea-utils Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ea-utils_1.1.2+dfsg-9.rbuild.log: 75.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/amd64/ea-utils_1.1.2+dfsg-9.rbuild.log.gz [2025-09-14 21:59:14] INFO: Starting at 2025-09-14 21:59:14.264398 [2025-09-14 21:59:14] INFO: Generating the pages of 1 package(s) [2025-09-14 21:59:14] INFO: Finished at 2025-09-14 21:59:14.530868, took: 0:00:00.266473 All cleanup done. Sun Sep 14 21:59:14 UTC 2025 - total duration: 0h 2m 42s. Sun Sep 14 21:59:14 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-u2OXHCIw, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 2min 43.672s CPU time consumed: 3.075s Memory peak: 44.4M (swap: 0B)