Running as unit: rb-build-amd64_37-38603.service ==================================================================================== Mon Nov 25 06:40:04 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_37) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Mon Nov 25 06:40:04 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-zpS1WSiO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 06:40:05 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Nov 25 06:40:05 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-4Cp9pB' Mon Nov 25 06:40:05 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Nov 25 06:40:05 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-8bX5mC' ok, let's check if biomaj3 is building anywhere yet… ok, biomaj3 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of biomaj3 in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Mon Nov 25 06:40:25 UTC 2024 I: starting to build biomaj3/unstable/amd64 on jenkins on '2024-11-25 06:40' Mon Nov 25 06:40:25 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/38603/console.log 1732516825 amd64 unstable biomaj3 Mon Nov 25 06:40:25 UTC 2024 I: Downloading source for unstable/biomaj3=3.1.24-1 --2024-11-25 06:40:25-- http://deb.debian.org/debian/pool/main/b/biomaj3/biomaj3_3.1.24-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘biomaj3_3.1.24-1.dsc’ 0K .. 100% 254M=0s 2024-11-25 06:40:25 (254 MB/s) - ‘biomaj3_3.1.24-1.dsc’ saved [2250/2250] --2024-11-25 06:40:25-- http://deb.debian.org/debian/pool/main/b/biomaj3/biomaj3_3.1.24-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2250 (2.2K) [text/prs.lines.tag] Saving to: ‘biomaj3_3.1.24-1.dsc’ 0K .. 100% 254M=0s 2024-11-25 06:40:25 (254 MB/s) - ‘biomaj3_3.1.24-1.dsc’ saved [2250/2250] Mon Nov 25 06:40:25 UTC 2024 I: biomaj3_3.1.24-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biomaj3 Binary: python3-biomaj3 Architecture: all Version: 3.1.24-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3 Vcs-Git: https://salsa.debian.org/med-team/biomaj3.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-bcrypt, python3-mock, python3-pytest, python3-pymongo, python3-redis, python3-setuptools, python3-yapsy, python3-biomaj3-core, python3-biomaj3-zipkin, python3-biomaj3-download, python3-biomaj3-user, python3-biomaj3-process Package-List: python3-biomaj3 deb python optional arch=all Checksums-Sha1: 9a8c87a162c2f1083491fd04f065efca0518e0eb 69068 biomaj3_3.1.24.orig.tar.xz 45d91d9ff7d24ac52dcc5b3b6db59d0f5e52ee58 16976 biomaj3_3.1.24-1.debian.tar.xz Checksums-Sha256: d524b2573be628742cf0c4cf2a04fd87353e3689564a229860bdebdcc2ba88df 69068 biomaj3_3.1.24.orig.tar.xz 755d19321d9578e65f69d666cfb6bd5ddcfa1e1f5f975b0f6149c98e64d3751a 16976 biomaj3_3.1.24-1.debian.tar.xz Files: 2dde746288ab1fab771054bc6339c21e 69068 biomaj3_3.1.24.orig.tar.xz 0c33f82799a4080761b28400ab8e351f 16976 biomaj3_3.1.24-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEc0cUmcxg7Z7ugFlGxb1sjyKV1QIFAmYh8YgSHHBsZXNzeUBk ZWJpYW4ub3JnAAoJEMW9bI8ildUCUhUQAKeDh7Jj2G4lbXaUnqGgBWzyk80ZJXXT OpXlfCoyFsf58chxSeDFcwzAhaTgRs10T9izQVl1dPpywB8gdGzARCHn3eq/R13k D+5TcySehQA4pe19pnk+fgpcrReJquqPRcI6i85hYAf2qgJgSk8+4IZW7SQVIWqn qfddiKYB8s5FgoSnqHLJ8TTf6ZovthTRPfZUOoHQLBgoGlzdH1XJa6p7HeGlwOvz rSsvC8iMoa/DcyGdYZMSa2/miwENcJ+A0qG0d25xfIWRlZvabmmfFuyGOmIFR/rk X7rrqhpNURa67hsaNH+bZdhQ1i3qq6/9mRY/IgtrvUMLQywtg+rbDU/Cg9OcGd+p MYzkGWmX7rcO1Wn0ulNkFN+/MJtO/TanO/Hfte5m3PnQ40MqmYZWQtr7X+xjtB12 t+ydRh98xGsA7ldVxsz/9f9EPW+4MCG0BKA06YbS8puyHTwopXka7Su1sIVtWfQt ejtarSAtGG+WXgm5KP9yfiiqkwpX+tgJYB3LZhiVLHx/IQpN7OEHS1nxylkc6DC6 hAQcBy58+Bq8HA/6qqeFyzgG5KZyLpZpF8nwBqXYRd1GZdO4QCT9AOjaD0HEsdji +AWnwT35Ouj0tFF05I3myteGYRDdYSieTz8osLeyWZafEUuTP42upsaW4qUULerD 2B/CCqpZEqV7 =MV0s -----END PGP SIGNATURE----- Mon Nov 25 06:40:25 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 06:40:25 UTC 2024 I: Starting 1st build on remote node infom01-amd64.debian.net. Mon Nov 25 06:40:25 UTC 2024 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Mon Nov 25 06:40:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Mon Nov 25 06:40:25 UTC 2024 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-UY9QPm' ==================================================================================== Mon Nov 25 06:40:27 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 biomaj3 unstable /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy 3.1.24-1" as arguments. Mon Nov 25 06:40:27 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-FlJY5S2n" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 06:40:27 UTC 2024 I: Downloading source for unstable/biomaj3=3.1.24-1 Reading package lists... NOTICE: 'biomaj3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3.git Please use: git clone https://salsa.debian.org/med-team/biomaj3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (tar) [69.1 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (diff) [17.0 kB] Fetched 88.3 kB in 0s (1058 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3.git Please use: git clone https://salsa.debian.org/med-team/biomaj3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (tar) [69.1 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (diff) [17.0 kB] Fetched 88.3 kB in 0s (1058 kB/s) Download complete and in download only mode ============================================================================= Building biomaj3 in unstable on amd64 on infom01-amd64 now. Date: Mon Nov 25 06:40:27 UTC 2024 Date UTC: Mon Nov 25 06:40:27 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 18:40:27 -12 2024 I: pbuilder-time-stamp: 1732516827 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3_3.1.24-1.dsc] I: copying [./biomaj3_3.1.24.orig.tar.xz] I: copying [./biomaj3_3.1.24-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Apr 19 04:22:32 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biomaj3_3.1.24-1.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3 in biomaj3-3.1.24 dpkg-source: info: unpacking biomaj3_3.1.24.orig.tar.xz dpkg-source: info: unpacking biomaj3_3.1.24-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_remove_drmaa.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5b2a4d420f494faf888f2a8484cc6bd9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1890452' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_vZIA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1 --logfile b1/build.log biomaj3_3.1.24-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-bcrypt, python3-mock, python3-pytest, python3-pymongo, python3-redis, python3-setuptools, python3-yapsy, python3-biomaj3-core, python3-biomaj3-zipkin, python3-biomaj3-download, python3-biomaj3-user, python3-biomaj3-process dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yapsy; however: Package python3-yapsy is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-download; however: Package python3-biomaj3-download is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-user; however: Package python3-biomaj3-user is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-process; however: Package python3-biomaj3-process is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-mock{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-six{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext python3-simplejson wget 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 42.5 MB of archives. After unpacking 170 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b1 [982 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-2 [25.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 2.2.0-1 [209 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b1 [271 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.3-3 [77.8 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-3+b1 [43.8 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.15-1 [14.5 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-3 [188 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-1 [46.0 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-1 [49.4 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-1 [26.2 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.0-1 [70.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-3 [87.0 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-mock all 5.1.0-1 [70.2 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-3 [272 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-2 [30.4 kB] Fetched 42.5 MB in 2s (17.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20285 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21347 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.0-2_amd64.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../013-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... 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Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-mock (5.1.0-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-six (1.16.0-7) ... Setting up python3-bson (4.10.1-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-pycurl (7.45.3-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-wrapt (1.15.0-3+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-pyasn1 (0.6.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b1) ... Setting up python3-pymongo (4.10.1-3) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.15-1) ... Setting up python3-yapsy (1.12.2-2) ... /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-1) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.19.0+ds1-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-redis (4.3.4-3) ... Setting up python3-irodsclient (2.2.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up dh-python (6.20241024) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-biomaj3-core (3.0.28-2) ... Setting up python3-biomaj3-download (3.2.12-1) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3_3.1.24-1_source.changes dpkg-buildpackage: info: source package biomaj3 dpkg-buildpackage: info: source version 3.1.24-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process running egg_info creating biomaj.egg-info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt writing manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying scripts/biomaj_migrate_database.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_migrate_database.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying scripts/biomaj_migrate_database.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj_migrate_database.py from 644 to 755 dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/notify.py to notify.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/bank.py to bank.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/options.py to options.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/session.py to session.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/schema_version.py to schema_version.cpython-313.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin copying build/scripts-3.13/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/schema_version.py to schema_version.cpython-312.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_installexamples sed -i '1s;^;#!/bin/bash\n;' debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/tools/process/concat.sh chmod -x debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/global.properties.example make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3' in '../python3-biomaj3_3.1.24-1_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3_3.1.24-1_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3_3.1.24-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1890452 and its subdirectories I: Current time: Sun Nov 24 18:43:45 -12 2024 I: pbuilder-time-stamp: 1732517025 Mon Nov 25 06:43:45 UTC 2024 I: Signing ./b1/biomaj3_3.1.24-1_amd64.buildinfo as biomaj3_3.1.24-1_amd64.buildinfo.asc Mon Nov 25 06:43:45 UTC 2024 I: Signed ./b1/biomaj3_3.1.24-1_amd64.buildinfo as ./b1/biomaj3_3.1.24-1_amd64.buildinfo.asc Mon Nov 25 06:43:45 UTC 2024 - build #1 for biomaj3/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Mon Nov 25 06:43:45 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-FlJY5S2n, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 06:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 06:40 b2 -rw-r--r-- 1 jenkins jenkins 2250 Apr 19 2024 biomaj3_3.1.24-1.dsc -rw------- 1 jenkins jenkins 3357 Nov 25 06:40 rbuildlog.nGlk3eX /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1: total 272 -rw-r--r-- 1 jenkins jenkins 16976 Nov 25 06:43 biomaj3_3.1.24-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2250 Nov 25 06:43 biomaj3_3.1.24-1.dsc -rw-r--r-- 1 jenkins jenkins 8384 Nov 25 06:43 biomaj3_3.1.24-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9266 Nov 25 06:43 biomaj3_3.1.24-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1100 Nov 25 06:43 biomaj3_3.1.24-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1499 Nov 25 06:43 biomaj3_3.1.24-1_source.changes -rw-r--r-- 1 jenkins jenkins 69068 Nov 25 06:43 biomaj3_3.1.24.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 84399 Nov 25 06:43 build.log -rw-r--r-- 1 jenkins jenkins 65144 Nov 25 06:43 python3-biomaj3_3.1.24-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2: total 0 Mon Nov 25 06:43:46 UTC 2024 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 18:40:27 -12 2024 I: pbuilder-time-stamp: 1732516827 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3_3.1.24-1.dsc] I: copying [./biomaj3_3.1.24.orig.tar.xz] I: copying [./biomaj3_3.1.24-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Apr 19 04:22:32 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biomaj3_3.1.24-1.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3 in biomaj3-3.1.24 dpkg-source: info: unpacking biomaj3_3.1.24.orig.tar.xz dpkg-source: info: unpacking biomaj3_3.1.24-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_remove_drmaa.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='5b2a4d420f494faf888f2a8484cc6bd9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1890452' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_vZIA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1 --logfile b1/build.log biomaj3_3.1.24-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-bcrypt, python3-mock, python3-pytest, python3-pymongo, python3-redis, python3-setuptools, python3-yapsy, python3-biomaj3-core, python3-biomaj3-zipkin, python3-biomaj3-download, python3-biomaj3-user, python3-biomaj3-process dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yapsy; however: Package python3-yapsy is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-download; however: Package python3-biomaj3-download is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-user; however: Package python3-biomaj3-user is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-process; however: Package python3-biomaj3-process is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-mock{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-six{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext python3-simplejson wget 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 42.5 MB of archives. After unpacking 170 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b1 [982 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-2 [25.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 2.2.0-1 [209 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b1 [271 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.3-3 [77.8 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-3+b1 [43.8 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.15-1 [14.5 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-3 [188 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-1 [46.0 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-1 [49.4 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-1 [26.2 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.0-1 [70.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-3 [87.0 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-mock all 5.1.0-1 [70.2 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-3 [272 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-2 [30.4 kB] Fetched 42.5 MB in 2s (17.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20285 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... 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Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 06:42:00 UTC 2024. Universal Time is now: Mon Nov 25 06:42:00 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-mock (5.1.0-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-six (1.16.0-7) ... Setting up python3-bson (4.10.1-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-pycurl (7.45.3-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-wrapt (1.15.0-3+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-pyasn1 (0.6.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b1) ... Setting up python3-pymongo (4.10.1-3) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.15-1) ... Setting up python3-yapsy (1.12.2-2) ... /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-1) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.19.0+ds1-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-redis (4.3.4-3) ... Setting up python3-irodsclient (2.2.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up dh-python (6.20241024) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-biomaj3-core (3.0.28-2) ... Setting up python3-biomaj3-download (3.2.12-1) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3_3.1.24-1_source.changes dpkg-buildpackage: info: source package biomaj3 dpkg-buildpackage: info: source version 3.1.24-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process running egg_info creating biomaj.egg-info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt writing manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying scripts/biomaj_migrate_database.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_migrate_database.py from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying scripts/biomaj_migrate_database.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj_migrate_database.py from 644 to 755 dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/notify.py to notify.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/bank.py to bank.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/options.py to options.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/session.py to session.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/schema_version.py to schema_version.cpython-313.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin copying build/scripts-3.13/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/schema_version.py to schema_version.cpython-312.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_installexamples sed -i '1s;^;#!/bin/bash\n;' debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/tools/process/concat.sh chmod -x debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/global.properties.example make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3' in '../python3-biomaj3_3.1.24-1_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3_3.1.24-1_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3_3.1.24-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1890452 and its subdirectories I: Current time: Sun Nov 24 18:43:45 -12 2024 I: pbuilder-time-stamp: 1732517025 Mon Nov 25 06:43:46 UTC 2024 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Mon Nov 25 06:43:47 UTC 2024 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Mon Nov 25 06:43:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Mon Nov 25 06:43:47 UTC 2024 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-4twdH1' ==================================================================================== Sun Dec 28 13:06:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 biomaj3 unstable /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy 3.1.24-1" as arguments. Sun Dec 28 13:06:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-YEje7M16" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 13:06:48 UTC 2025 I: Downloading source for unstable/biomaj3=3.1.24-1 Reading package lists... NOTICE: 'biomaj3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3.git Please use: git clone https://salsa.debian.org/med-team/biomaj3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (tar) [69.1 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (diff) [17.0 kB] Fetched 88.3 kB in 0s (1671 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3.git Please use: git clone https://salsa.debian.org/med-team/biomaj3.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 88.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (dsc) [2250 B] Get:2 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (tar) [69.1 kB] Get:3 http://deb.debian.org/debian unstable/main biomaj3 3.1.24-1 (diff) [17.0 kB] Fetched 88.3 kB in 0s (1671 kB/s) Download complete and in download only mode ============================================================================= Re-Building biomaj3 in unstable on amd64 on infom02-amd64 now. Date: Sun Dec 28 13:06:48 UTC 2025 Date UTC: Sun Dec 28 13:06:48 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_OCfl + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' biomaj3 = debian-installer -o biomaj3 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' biomaj3 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_OCfl --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2 --logfile b2/build.log biomaj3_3.1.24-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Dec 29 03:06:48 +14 2025 I: pbuilder-time-stamp: 1766927208 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3_3.1.24-1.dsc] I: copying [./biomaj3_3.1.24.orig.tar.xz] I: copying [./biomaj3_3.1.24-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Apr 19 04:22:32 2024 gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 gpgv: issuer "plessy@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./biomaj3_3.1.24-1.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3 in biomaj3-3.1.24 dpkg-source: info: unpacking biomaj3_3.1.24.orig.tar.xz dpkg-source: info: unpacking biomaj3_3.1.24-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_remove_drmaa.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 28 13:06 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=d4e9264a8dcf404b84678251f2f51c30 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1922934 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_OCfl --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2 --logfile b2/build.log biomaj3_3.1.24-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-bcrypt, python3-mock, python3-pytest, python3-pymongo, python3-redis, python3-setuptools, python3-yapsy, python3-biomaj3-core, python3-biomaj3-zipkin, python3-biomaj3-download, python3-biomaj3-user, python3-biomaj3-process dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-mock; however: Package python3-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-redis; however: Package python3-redis is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-yapsy; however: Package python3-yapsy is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-zipkin; however: Package python3-biomaj3-zipkin is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-download; however: Package python3-biomaj3-download is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-user; however: Package python3-biomaj3-user is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-process; however: Package python3-biomaj3-process is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libprotobuf32t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-async-timeout{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-biomaj3-download{a} python3-biomaj3-process{a} python3-biomaj3-user{a} python3-biomaj3-zipkin{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-colorama{a} python3-consul{a} python3-decorator{a} python3-defusedxml{a} python3-deprecated{a} python3-dnspython{a} python3-elasticsearch{a} python3-flask{a} python3-ftputil{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-irodsclient{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-mock{a} python3-more-itertools{a} python3-packaging{a} python3-pika{a} python3-pkg-resources{a} python3-pluggy{a} python3-prettytable{a} python3-prometheus-client{a} python3-protobuf{a} python3-py-zipkin{a} python3-pyasn1{a} python3-pycurl{a} python3-pymongo{a} python3-pytest{a} python3-redis{a} python3-requests{a} python3-setuptools{a} python3-simpleeval{a} python3-six{a} python3-tabulate{a} python3-tenacity{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-werkzeug{a} python3-wrapt{a} python3-yaml{a} python3-yapsy{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pygments python3-pyinotify python3-pymongo-ext python3-simplejson wget 0 packages upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 42.5 MB of archives. After unpacking 170 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.0-2 [856 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.0-2 [2038 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20241024 [109 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b1 [982 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.0-2 [1992 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.0-2 [730 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.12.7-1 [1052 B] Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-async-timeout all 5.0.1-1 [8324 B] Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-bcrypt amd64 4.2.0-2.1 [236 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-elasticsearch all 7.17.6-1 [113 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-core all 3.0.28-2 [25.0 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 python3-py-zipkin all 1.2.8-2 [36.4 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-zipkin all 0.2.2-3 [15.1 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 python3-consul all 1.5.1+dfsg-1 [22.7 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 python3-click all 8.1.7-2 [94.3 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 python3-itsdangerous all 2.2.0-1 [18.0 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 python3-werkzeug all 3.0.4-1 [207 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 python3-flask all 3.0.3-1 [104 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 python3-ftputil all 5.1.0-1 [40.4 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 python3-prettytable all 3.12.0-1 [39.5 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 python3-six all 1.16.0-7 [16.4 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 python3-irodsclient all 2.2.0-1 [209 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 python3-pika all 1.3.2-1 [125 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 python3-prometheus-client all 0.19.0+ds1-1 [35.0 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 python3-protobuf amd64 3.21.12-10+b1 [271 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 python3-pycurl amd64 7.45.3-3 [77.8 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 python3-wrapt amd64 1.15.0-3+b1 [43.8 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 python3-deprecated all 1.2.15-1 [14.5 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 python3-redis all 4.3.4-3 [188 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 python3-simpleeval all 1.0.3-1 [24.0 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 python3-tenacity all 8.4.2+really8.4.1-1 [46.0 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 python3-yaml amd64 6.0.2-1+b1 [178 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-download all 3.2.12-1 [49.4 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-process all 3.0.19-1 [26.2 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 python3-pyasn1 all 0.6.0-1 [70.0 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 python3-biomaj3-user all 3.0.12-2 [19.7 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 python3-bson all 4.10.1-3 [87.0 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 python3-dnspython all 2.6.1-1 [161 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 132 http://deb.debian.org/debian unstable/main amd64 python3-mock all 5.1.0-1 [70.2 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-3 [272 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-2 [30.4 kB] Fetched 42.5 MB in 1s (66.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.7-3) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_amd64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:amd64 (3.12.7-3) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20285 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_amd64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:amd64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../14-libreadline8t64_8.2-5_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_amd64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21347 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_amd64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../001-libpython3.13-minimal_3.13.0-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.0-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../002-python3.13-minimal_3.13.0-2_amd64.deb ... Unpacking python3.13-minimal (3.13.0-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.3.2-2_amd64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../013-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../025-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../026-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../028-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../029-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../030-gettext_0.22.5-2_amd64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../031-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../032-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../033-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../034-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../035-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../036-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. 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Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:amd64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libkrb5support0:amd64 (1.21.3-3) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 28 13:08:00 UTC 2025. Universal Time is now: Sun Dec 28 13:08:00 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:amd64 (1.21.3-3) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ... Setting up libreadline8t64:amd64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libpython3.13-stdlib:amd64 (3.13.0-2) ... Setting up libcurl4t64:amd64 (8.11.0-1) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.0-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:amd64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b2) ... Setting up python3-simpleeval (1.0.3-1) ... Setting up python3-mock (5.1.0-1) ... Setting up python3-async-timeout (5.0.1-1) ... Setting up python3-six (1.16.0-7) ... Setting up python3-bson (4.10.1-3) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-pycurl (7.45.3-3) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-humanfriendly (10.0-6) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-werkzeug (3.0.4-1) ... Setting up python3-idna (3.8-2) ... Setting up python3-wrapt (1.15.0-3+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-dnspython (2.6.1-1) ... Setting up python3-pyasn1 (0.6.0-1) ... Setting up python3-py-zipkin (1.2.8-2) ... Setting up python3-protobuf (3.21.12-10+b1) ... Setting up python3-pymongo (4.10.1-3) ... Setting up python3-prettytable (3.12.0-1) ... Setting up python3-deprecated (1.2.15-1) ... Setting up python3-yapsy (1.12.2-2) ... /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init__.py:73: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:76: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W", re.U) /usr/lib/python3/dist-packages/yapsy/__init___flymake.py:78: SyntaxWarning: invalid escape sequence '\W' RE_NON_ALPHANUM = re.compile("\W") Setting up python3-blinker (1.9.0-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-elasticsearch (7.17.6-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-ftputil (5.1.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pika (1.3.2-1) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-tenacity (8.4.2+really8.4.1-1) ... Setting up python3-bcrypt (4.2.0-2.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-1) ... Setting up python3-all (3.12.7-1) ... Setting up python3-yaml (6.0.2-1+b1) ... Setting up python3-click (8.1.7-2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-prometheus-client (0.19.0+ds1-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-redis (4.3.4-3) ... Setting up python3-irodsclient (2.2.0-1) ... /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') /usr/lib/python3/dist-packages/irods/test/admin_test.py:380: SyntaxWarning: invalid escape sequence '\]' new_password = '''abc123!"#$%&'()*+,-./:;<=>?@[\]^_`{|}~Z''' /usr/lib/python3/dist-packages/irods/test/admin_test.py:406: SyntaxWarning: invalid escape sequence '\]' new_comment = '''comment-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/admin_test.py:426: SyntaxWarning: invalid escape sequence '\]' new_info = '''info-abc123!"#$%&'()*+,-./:;<=>?@[\]^_{|}~Z''' # omitting backtick due to #170 /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:38: SyntaxWarning: invalid escape sequence '\.' localhost_with_optional_domain_pattern = re.compile('localhost(\.\S\S*)?$') /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:335: SyntaxWarning: invalid escape sequence '\s' NumThreadsRegex = re.compile(u'^num_threads\s*=\s*(\d+)',re.MULTILINE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:463: SyntaxWarning: invalid escape sequence '\s' NO_CHECKSUM_MESSAGE_PATTERN = re.compile( 'No\s+Checksum\s+Available.+\s+Replica\s\[(\d+)\]', re.IGNORECASE) /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:857: SyntaxWarning: invalid escape sequence '\S' find_iterator = itertools.chain( re.finditer(u'redirect_to_host = (\S+)', search_text), /usr/lib/python3/dist-packages/irods/test/data_obj_test.py:858: SyntaxWarning: invalid escape sequence '\S' re.finditer(u'target_host = (\S+)', search_text) ) /usr/lib/python3/dist-packages/irods/test/rule_test.py:371: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '.*\[Hello world!\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:392: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:393: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:399: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[0], '\[INTEGER\]\[5\]') /usr/lib/python3/dist-packages/irods/test/rule_test.py:400: SyntaxWarning: invalid escape sequence '\[' self.assertRegexpMatches (lines[1], '\[STRING\]\[A String\]') Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-flask (3.0.3-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-consul (1.5.1+dfsg-1) ... Setting up dh-python (6.20241024) ... Setting up python3-biomaj3-zipkin (0.2.2-3) ... Setting up python3-biomaj3-core (3.0.28-2) ... Setting up python3-biomaj3-download (3.2.12-1) ... Setting up python3-biomaj3-user (3.0.12-2) ... Setting up python3-biomaj3-process (3.0.19-1) ... Processing triggers for libc-bin (2.40-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3_3.1.24-1_source.changes dpkg-buildpackage: info: source package biomaj3 dpkg-buildpackage: info: source version 3.1.24-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Charles Plessy dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process running egg_info creating biomaj.egg-info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt writing manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying scripts/biomaj_migrate_database.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj_migrate_database.py from 664 to 775 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.12 copying scripts/biomaj_migrate_database.py -> build/scripts-3.12 changing mode of build/scripts-3.12/biomaj_migrate_database.py from 664 to 775 dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/notify.py to notify.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/schema_version.py to schema_version.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/session.py to session.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/options.py to options.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/bank.py to bank.cpython-313.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin copying build/scripts-3.13/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 775 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt writing requirements to biomaj.egg-info/requires.txt writing top-level names to biomaj.egg-info/top_level.txt reading manifest file 'biomaj.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj' adding license file 'LICENSE' writing manifest file 'biomaj.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/schema_version.py to schema_version.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 775 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_installexamples sed -i '1s;^;#!/bin/bash\n;' debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/tools/process/concat.sh chmod -x debian/python3-biomaj3/usr/share/doc/python3-biomaj3/examples/global.properties.example make[1]: Leaving directory '/build/reproducible-path/biomaj3-3.1.24' dh_python3 -O--buildsystem=pybuild I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3' in '../python3-biomaj3_3.1.24-1_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3_3.1.24-1_amd64.buildinfo dpkg-genchanges --build=binary -O../biomaj3_3.1.24-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1922934 and its subdirectories I: Current time: Mon Dec 29 03:09:05 +14 2025 I: pbuilder-time-stamp: 1766927345 + false + set +x Sun Dec 28 13:09:05 UTC 2025 I: Signing ./b2/biomaj3_3.1.24-1_amd64.buildinfo as biomaj3_3.1.24-1_amd64.buildinfo.asc Sun Dec 28 13:09:05 UTC 2025 I: Signed ./b2/biomaj3_3.1.24-1_amd64.buildinfo as ./b2/biomaj3_3.1.24-1_amd64.buildinfo.asc Sun Dec 28 13:09:05 UTC 2025 - build #2 for biomaj3/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Dec 28 13:09:05 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-YEje7M16, removing. /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy: total 104 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 06:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 06:46 b2 -rw-r--r-- 1 jenkins jenkins 2250 Apr 19 2024 biomaj3_3.1.24-1.dsc -rw------- 1 jenkins jenkins 88045 Nov 25 06:43 rbuildlog.nGlk3eX /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1: total 284 -rw-r--r-- 1 jenkins jenkins 16976 Nov 25 06:43 biomaj3_3.1.24-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2250 Nov 25 06:43 biomaj3_3.1.24-1.dsc -rw-r--r-- 1 jenkins jenkins 8384 Nov 25 06:43 biomaj3_3.1.24-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9266 Nov 25 06:43 biomaj3_3.1.24-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1100 Nov 25 06:43 biomaj3_3.1.24-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1499 Nov 25 06:43 biomaj3_3.1.24-1_source.changes -rw-r--r-- 1 jenkins jenkins 69068 Nov 25 06:43 biomaj3_3.1.24.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 84399 Nov 25 06:43 build.log -rw-r--r-- 1 jenkins jenkins 65144 Nov 25 06:43 python3-biomaj3_3.1.24-1_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2: total 276 -rw-r--r-- 1 jenkins jenkins 16976 Nov 25 06:46 biomaj3_3.1.24-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2250 Nov 25 06:46 biomaj3_3.1.24-1.dsc -rw-r--r-- 1 jenkins jenkins 8387 Nov 25 06:46 biomaj3_3.1.24-1_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 9269 Nov 25 06:46 biomaj3_3.1.24-1_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1100 Nov 25 06:46 biomaj3_3.1.24-1_amd64.changes -rw-r--r-- 1 jenkins jenkins 1499 Nov 25 06:46 biomaj3_3.1.24-1_source.changes -rw-r--r-- 1 jenkins jenkins 69068 Nov 25 06:46 biomaj3_3.1.24.orig.tar.xz -rw-r--r-- 1 jenkins jenkins 86336 Nov 25 06:46 build.log -rw-r--r-- 1 jenkins jenkins 65144 Nov 25 06:46 python3-biomaj3_3.1.24-1_all.deb Mon Nov 25 06:46:06 UTC 2024 I: Deleting $TMPDIR on infom02-amd64.debian.net. Mon Nov 25 06:46:07 UTC 2024 I: biomaj3_3.1.24-1_amd64.changes: Format: 1.8 Date: Fri, 19 Apr 2024 13:13:23 +0900 Source: biomaj3 Binary: python3-biomaj3 Architecture: all Version: 3.1.24-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Charles Plessy Description: python3-biomaj3 - BioMAJ workflow management library Changes: biomaj3 (3.1.24-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.7.0 (routine-update) Checksums-Sha1: f574ae6200bf10f22260a25b8e6f7e77a86c0cc3 8384 biomaj3_3.1.24-1_amd64.buildinfo 562cc2c1bc3e5e7f233fbb32a9e25cd4da417b1f 65144 python3-biomaj3_3.1.24-1_all.deb Checksums-Sha256: 1dfd7ca5ed11e33b7717b63935ffec4966a333899c0b3d67553814d3e06aceac 8384 biomaj3_3.1.24-1_amd64.buildinfo 8710bf1d87d2b68a4d6e9d9e0b991625704ad9298ed1fbb0e238eafcd29e9dd7 65144 python3-biomaj3_3.1.24-1_all.deb Files: 7e21715a186d210f16537a6d816ef4ce 8384 python optional biomaj3_3.1.24-1_amd64.buildinfo 34024e8f9bfcc0e128b15da7929e57f5 65144 python optional python3-biomaj3_3.1.24-1_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3_3.1.24-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3_3.1.24-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/biomaj3_3.1.24-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/biomaj3_3.1.24-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/biomaj3_3.1.24-1_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3_3.1.24-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-25 06:43:46.260705000 +0000 +++ b2/build.log 2024-11-25 06:46:06.742344352 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 24 18:40:27 -12 2024 -I: pbuilder-time-stamp: 1732516827 +I: Current time: Mon Dec 29 03:06:48 +14 2025 +I: pbuilder-time-stamp: 1766927208 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -28,51 +28,83 @@ dpkg-source: info: applying fix_remove_drmaa.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 28 13:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5b2a4d420f494faf888f2a8484cc6bd9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1890452' - PS1='# ' - PS2='> ' + INVOCATION_ID=d4e9264a8dcf404b84678251f2f51c30 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1922934 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_vZIA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1 --logfile b1/build.log biomaj3_3.1.24-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/pbuilderrc_OCfl --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2 --logfile b2/build.log biomaj3_3.1.24-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-28-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1890452/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -272,7 +304,7 @@ Get: 134 http://deb.debian.org/debian unstable/main amd64 python3-pymongo all 4.10.1-3 [272 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.3-1 [249 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 python3-yapsy all 1.12.2-2 [30.4 kB] -Fetched 42.5 MB in 2s (17.8 MB/s) +Fetched 42.5 MB in 1s (66.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -720,8 +752,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 25 06:42:00 UTC 2024. -Universal Time is now: Mon Nov 25 06:42:00 UTC 2024. +Local time is now: Sun Dec 28 13:08:00 UTC 2025. +Universal Time is now: Sun Dec 28 13:08:00 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:amd64 (3.13.0-2) ... @@ -916,7 +948,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3_3.1.24-1_source.changes +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biomaj3-3.1.24/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3_3.1.24-1_source.changes dpkg-buildpackage: info: source package biomaj3 dpkg-buildpackage: info: source version 3.1.24-1 dpkg-buildpackage: info: source distribution unstable @@ -964,16 +1000,16 @@ creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj -copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj -copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj -copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj -copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj +copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj +copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj +copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj +copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process -copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process +copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process running egg_info creating biomaj.egg-info writing biomaj.egg-info/PKG-INFO @@ -989,7 +1025,7 @@ running build_scripts creating build/scripts-3.13 copying scripts/biomaj_migrate_database.py -> build/scripts-3.13 -changing mode of build/scripts-3.13/biomaj_migrate_database.py from 644 to 755 +changing mode of build/scripts-3.13/biomaj_migrate_database.py from 664 to 775 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) @@ -998,16 +1034,16 @@ creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj -copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj -copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj -copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj -copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj copying biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj +copying biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj +copying biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj +copying biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj +copying biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj creating /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process -copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process copying biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process +copying biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process running egg_info writing biomaj.egg-info/PKG-INFO writing dependency_links to biomaj.egg-info/dependency_links.txt @@ -1021,7 +1057,7 @@ running build_scripts creating build/scripts-3.12 copying scripts/biomaj_migrate_database.py -> build/scripts-3.12 -changing mode of build/scripts-3.12/biomaj_migrate_database.py from 644 to 755 +changing mode of build/scripts-3.12/biomaj_migrate_database.py from 664 to 775 dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1062,35 +1098,35 @@ creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.13_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/workflow.py to workflow.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/notify.py to notify.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/bank.py to bank.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/options.py to options.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/session.py to session.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-313.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/process/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/notify.py to notify.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/schema_version.py to schema_version.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/session.py to session.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/options.py to options.cpython-313.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj/bank.py to bank.cpython-313.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.13/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin copying build/scripts-3.13/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin -changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 +changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 775 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3 /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) @@ -1125,34 +1161,34 @@ creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/workflow.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj creating /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/processfactory.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process -copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/metaprocess.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/process/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/notify.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/__init__.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/schema_version.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/mongo_connector.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/session.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/options.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj +copying /build/reproducible-path/biomaj3-3.1.24/.pybuild/cpython3_3.12_biomaj/build/biomaj/bank.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/workflow.py to workflow.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/processfactory.py to processfactory.cpython-312.pyc -byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/metaprocess.py to metaprocess.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/process/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/notify.py to notify.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/schema_version.py to schema_version.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/mongo_connector.py to mongo_connector.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/session.py to session.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/options.py to options.cpython-312.pyc +byte-compiling /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj/bank.py to bank.cpython-312.pyc running install_egg_info Copying biomaj.egg-info to /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/lib/python3.12/dist-packages/biomaj-3.1.24.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.12/biomaj_migrate_database.py -> /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin -changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 755 +changing mode of /build/reproducible-path/biomaj3-3.1.24/debian/python3-biomaj3/usr/bin/biomaj_migrate_database.py to 775 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-3.1.24' dh_install @@ -1190,12 +1226,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1922934/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1890452 and its subdirectories -I: Current time: Sun Nov 24 18:43:45 -12 2024 -I: pbuilder-time-stamp: 1732517025 +I: removing directory /srv/workspace/pbuilder/1922934 and its subdirectories +I: Current time: Mon Dec 29 03:09:05 +14 2025 +I: pbuilder-time-stamp: 1766927345 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3_3.1.24-1.diff: 85.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/biomaj3_3.1.24-1.diff.gz b2/build.log: 84.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.5% -- replaced with stdout Mon Nov 25 06:46:08 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_biomaj3_unstable_amd64_1732517168 + touch /var/log/reproducible-builds/diffoscope_stamp_biomaj3_unstable_amd64_1732517168 + RESULT=0 + systemd-run '--description=diffoscope on biomaj3/3.1.24-1 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_37-38603 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy --run-session -c jenkins-reproducible-unstable-diffoscope-39f22377-2130-40f3-b8c1-ea76ba652c3b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/dbd-tmp-7Zqpe3p ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1/biomaj3_3.1.24-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2/biomaj3_3.1.24-1_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_37-38603.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/biomaj3_3.1.24-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b1/biomaj3_3.1.24-1_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.gopwLELy/b2/biomaj3_3.1.24-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.362s) 0.362s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 720ms CPU time consumed: 718ms _ _ _ _____ | |__ (_) ___ _ __ ___ __ _ (_)___ / | '_ \| |/ _ \| '_ ` _ \ / _` || | |_ \ | |_) | | (_) | | | | | | (_| || |___) | |_.__/|_|\___/|_| |_| |_|\__,_|/ |____/ |__/ Mon Nov 25 06:46:09 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 25 06:46:09 UTC 2024 I: biomaj3 from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 06:46:10] INFO: Starting at 2024-11-25 06:46:10.407260 [2024-11-25 06:46:10] INFO: Generating the pages of 1 package(s) [2024-11-25 06:46:10] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/biomaj3 didn't produce a buildlog, even though it has been built. [2024-11-25 06:46:10] INFO: Finished at 2024-11-25 06:46:10.968730, took: 0:00:00.561477 Mon Nov 25 06:46:11 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/biomaj3.html Mon Nov 25 06:46:11 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 25 06:46:11 UTC 2024 I: Submitting 12K b1/biomaj3_3.1.24-1_amd64.buildinfo.asc https://buildinfo.debian.net/f574ae6200bf10f22260a25b8e6f7e77a86c0cc3/biomaj3_3.1.24-1_all Mon Nov 25 06:46:12 UTC 2024 I: Submitting 12K b2/biomaj3_3.1.24-1_amd64.buildinfo.asc https://buildinfo.debian.net/c5fab8757af03b61e64486390cf76f2084dfd8c1/biomaj3_3.1.24-1_all Mon Nov 25 06:46:13 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 25 06:46:13 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 25 06:46:13 UTC 2024 I: Removing signed biomaj3_3.1.24-1_amd64.buildinfo.asc files: removed './b1/biomaj3_3.1.24-1_amd64.buildinfo.asc' removed './b2/biomaj3_3.1.24-1_amd64.buildinfo.asc' 1732517173 amd64 unstable biomaj3 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3_3.1.24-1.rbuild.log: 82.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/biomaj3_3.1.24-1.rbuild.log.gz [2024-11-25 06:46:13] INFO: Starting at 2024-11-25 06:46:13.966731 [2024-11-25 06:46:14] INFO: Generating the pages of 1 package(s) [2024-11-25 06:46:14] INFO: Finished at 2024-11-25 06:46:14.374499, took: 0:00:00.407775 All cleanup done. Mon Nov 25 06:46:14 UTC 2024 - total duration: 0h 6m 4s. Mon Nov 25 06:46:14 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-zpS1WSiO, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 6min 9.524s CPU time consumed: 7.375s