Running as unit: rb-build-amd64_37-51508.service ==================================================================================== Sat Feb 22 06:01:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_37) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Sat Feb 22 06:01:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-TX1Pjafu" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 06:01:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sat Feb 22 06:01:59 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-dHXzjf' Sat Feb 22 06:02:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sat Feb 22 06:02:00 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KOyHRD' ok, let's check if deblur is building anywhere yet… ok, deblur is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of deblur in trixie on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Sat Feb 22 06:02:15 UTC 2025 I: starting to build deblur/trixie/amd64 on jenkins on '2025-02-22 06:01' Sat Feb 22 06:02:15 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/51508/console.log 1740204135 amd64 trixie deblur Sat Feb 22 06:02:15 UTC 2025 I: Downloading source for trixie/deblur=1.1.1-4 --2025-02-22 06:02:15-- http://deb.debian.org/debian/pool/main/d/deblur/deblur_1.1.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2252 (2.2K) [text/prs.lines.tag] Saving to: ‘deblur_1.1.1-4.dsc’ 0K .. 100% 258M=0s 2025-02-22 06:02:15 (258 MB/s) - ‘deblur_1.1.1-4.dsc’ saved [2252/2252] --2025-02-22 06:02:15-- http://deb.debian.org/debian/pool/main/d/deblur/deblur_1.1.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2252 (2.2K) [text/prs.lines.tag] Saving to: ‘deblur_1.1.1-4.dsc’ 0K .. 100% 258M=0s 2025-02-22 06:02:15 (258 MB/s) - ‘deblur_1.1.1-4.dsc’ saved [2252/2252] Sat Feb 22 06:02:15 UTC 2025 I: deblur_1.1.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: deblur Binary: deblur Architecture: all Version: 1.1.1-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/biocore/deblur Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/deblur Vcs-Git: https://salsa.debian.org/med-team/deblur.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest , sortmerna (>> 4~) [amd64] , vsearch, mafft Package-List: deblur deb science optional arch=all Checksums-Sha1: e6e86817af379b29fbed698573f3463d154a16bf 3901272 deblur_1.1.1.orig.tar.gz cd102dc36c2e16c617925a77dff760437ba572ec 4280 deblur_1.1.1-4.debian.tar.xz Checksums-Sha256: a4d60bde48de1619300a20e689cf80f367c45649f73ce7d196fcfe2db70d3d40 3901272 deblur_1.1.1.orig.tar.gz 5bdaef691817fc5fd7f15146b7182b7f8377742b5469b3c68a7261b32e5e3c95 4280 deblur_1.1.1-4.debian.tar.xz Files: 38ee00ccde82293c5f122ee36dc4bf25 3901272 deblur_1.1.1.orig.tar.gz 6569d8d9ebe54f134a10c36cc92bee08 4280 deblur_1.1.1-4.debian.tar.xz Dgit: 8cefaf9d683f11c872a8a4f962dd15b6badfe00d debian archive/debian/1.1.1-4 https://git.dgit.debian.org/deblur -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmeyKEsUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdrZ8A/7BIc+e+nosCA32DENzZ2KFOI60pkb sN6yzF6bfaq2sFBQXXIwCy5jbeGMvdfJg6fGZKl+3DEh6niciIMK4tD/Pn9X53iS +7RqgHbeQI3LRP5Aha11qbSnDwe0oGcvuBaOZEvBvrX+NH5PZBkHLHyjVeCVKx+1 Z3rdwwBYqcri7ypiY1aCVXIiE8laX+6GKCvZekHdwS5PFPo1sr43JivrtHN8YjTS rAyA6Smig4XFVUf9uhUMIIH/zv++LbN2hQiZrEUYrPANXtZmNHeYY7efx6OoPV7E 8bSARxcr3f+5QHJP5JVzkOhBuTnQgFEUDddheiP7/YydXq7GgiXMwE6h1LWj18uE 2e6SYSm0t9zmIH8M95fRPQkfnlenfPRBP1bcMiB3YhYybQfG3u/0cb2LtMpLB8bX 7apoV7ciSJg4KHVcRMypeEGT5KvdmTpHeSH3vMHe89zvLQEKGydmtJHyOE+oqe5T Z/tRxQ05rUZXA7ypbPCf8GpVRIx3JQ+8m07dTBGsEm6VbBI/rX3T5pirbNpkQDiq +y8hQlpY9hTfxhdCzmw0ExaMYq4zt96GunIPFwHs27FvqYLFScp8O/i7xjZ11hqb NbPwjsnJ40Y1fxf+SE+SSbZv2HeZe/A3ZcCN8K7pqucfMYH9Z0Z8CEz0fk4YrehF vmyTz/kLsGsDAv4= =4F7g -----END PGP SIGNATURE----- Sat Feb 22 06:02:15 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 06:02:15 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Sat Feb 22 06:02:15 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sat Feb 22 06:02:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sat Feb 22 06:02:15 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-9vfZpZ' ==================================================================================== Sat Feb 22 06:02:17 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 deblur trixie /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t 1.1.1-4" as arguments. Sat Feb 22 06:02:17 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-26fDRoJK" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 06:02:17 UTC 2025 I: Downloading source for trixie/deblur=1.1.1-4 Reading package lists... NOTICE: 'deblur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/deblur.git Please use: git clone https://salsa.debian.org/med-team/deblur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3908 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (dsc) [2252 B] Get:2 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (tar) [3901 kB] Get:3 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (diff) [4280 B] Fetched 3908 kB in 0s (10.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'deblur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/deblur.git Please use: git clone https://salsa.debian.org/med-team/deblur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3908 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (dsc) [2252 B] Get:2 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (tar) [3901 kB] Get:3 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (diff) [4280 B] Fetched 3908 kB in 0s (10.7 MB/s) Download complete and in download only mode ============================================================================= Building deblur in trixie on amd64 on infom01-amd64 now. Date: Sat Feb 22 06:02:17 UTC 2025 Date UTC: Sat Feb 22 06:02:17 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 18:02:17 -12 2025 I: pbuilder-time-stamp: 1740204137 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [deblur_1.1.1-4.dsc] I: copying [./deblur_1.1.1.orig.tar.gz] I: copying [./deblur_1.1.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./deblur_1.1.1-4.dsc: unsupported subcommand dpkg-source: info: extracting deblur in deblur-1.1.1 dpkg-source: info: unpacking deblur_1.1.1.orig.tar.gz dpkg-source: info: unpacking deblur_1.1.1-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='599e7c2695924627a723db4efd35bcf2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1657061' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_PE6V --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1 --logfile b1/build.log deblur_1.1.1-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest, sortmerna (>> 4~), vsearch, mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on sortmerna (>> 4~); however: Package sortmerna is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgflags2.2{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librocksdb9.10{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsnappy1v5{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sortmerna{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-pygments python3-tables ruby wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 98.7 MB of archives. After unpacking 492 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libgflags2.2 amd64 2.2.2-2 [83.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librocksdb9.10 amd64 9.10.0-1+b1 [3923 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.12.1-1+b2 [1471 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.8-1 [95.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [7295 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4 [20.5 MB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.16-1+b4 [174 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-6 [177 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b2 [2498 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4+b1 [1506 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 sortmerna amd64 4.3.7-2+b2 [585 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 vsearch amd64 2.29.1-1+b1 [433 kB] Fetched 98.7 MB in 6s (17.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20192 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_amd64.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025a-2_all.deb ... Unpacking tzdata (2025a-2) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21202 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.9-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.9-1_amd64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.40.4-3_amd64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:amd64. 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Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../020-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../021-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../022-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../023-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../024-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../025-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../026-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../028-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../035-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../036-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../037-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../038-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../039-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../040-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../041-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../042-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. 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Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 06:03:34 UTC 2025. Universal Time is now: Sat Feb 22 06:03:34 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.4.1-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up librocksdb9.10 (9.10.0-1+b1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sortmerna (4.3.7-2+b2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-hdmedians (0.14.2-6) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-h5py-serial (3.12.1-1+b2) ... Setting up python3-h5py (3.12.1-1) ... Setting up dh-python (6.20250108) ... Setting up python3-biom-format (2.1.16-1+b4) ... Setting up python3-skbio (0.6.2-4+b1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../deblur_1.1.1-4_source.changes dpkg-buildpackage: info: source package deblur dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.12 copying and adjusting scripts/deblur -> build/scripts-3.12 changing mode of build/scripts-3.12/deblur from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.13 copying and adjusting scripts/deblur -> build/scripts-3.13 changing mode of build/scripts-3.13/deblur from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build; python3.12 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 1.27s ================= I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build; python3.13 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 0.81s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/deblur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_script.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_support_files.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_workflow.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_sequence.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/parallel_deblur.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/workflow.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc running install_egg_info running egg_info creating deblur.egg-info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt writing manifest file 'deblur.egg-info/SOURCES.txt' reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin copying build/scripts-3.12/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_support_files.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_script.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_workflow.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_sequence.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/parallel_deblur.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/sequence.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/deblurring.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/deblurring.py to deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_script.py to test_script.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/sequence.py to sequence.cpython-313.pyc running install_egg_info running egg_info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'deblur' in '../deblur_1.1.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../deblur_1.1.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../deblur_1.1.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1657061 and its subdirectories I: Current time: Fri Feb 21 18:04:55 -12 2025 I: pbuilder-time-stamp: 1740204295 Sat Feb 22 06:04:55 UTC 2025 I: Signing ./b1/deblur_1.1.1-4_amd64.buildinfo as deblur_1.1.1-4_amd64.buildinfo.asc Sat Feb 22 06:04:55 UTC 2025 I: Signed ./b1/deblur_1.1.1-4_amd64.buildinfo as ./b1/deblur_1.1.1-4_amd64.buildinfo.asc Sat Feb 22 06:04:55 UTC 2025 - build #1 for deblur/trixie/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sat Feb 22 06:04:55 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-26fDRoJK, removing. /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 06:04 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 06:02 b2 -rw-r--r-- 1 jenkins jenkins 2252 Feb 16 18:10 deblur_1.1.1-4.dsc -rw------- 1 jenkins jenkins 3343 Feb 22 06:02 rbuildlog.TXsyJ0W /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1: total 2084 -rw-r--r-- 1 jenkins jenkins 114911 Feb 22 06:04 build.log -rw-r--r-- 1 jenkins jenkins 4280 Feb 22 06:04 deblur_1.1.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2252 Feb 22 06:04 deblur_1.1.1-4.dsc -rw-r--r-- 1 jenkins jenkins 1970592 Feb 22 06:04 deblur_1.1.1-4_all.deb -rw-r--r-- 1 jenkins jenkins 7821 Feb 22 06:04 deblur_1.1.1-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8703 Feb 22 06:04 deblur_1.1.1-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1669 Feb 22 06:04 deblur_1.1.1-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1823 Feb 22 06:04 deblur_1.1.1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2: total 0 Sat Feb 22 06:04:56 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 18:02:17 -12 2025 I: pbuilder-time-stamp: 1740204137 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [deblur_1.1.1-4.dsc] I: copying [./deblur_1.1.1.orig.tar.gz] I: copying [./deblur_1.1.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./deblur_1.1.1-4.dsc: unsupported subcommand dpkg-source: info: extracting deblur in deblur-1.1.1 dpkg-source: info: unpacking deblur_1.1.1.orig.tar.gz dpkg-source: info: unpacking deblur_1.1.1-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='599e7c2695924627a723db4efd35bcf2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1657061' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_PE6V --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1 --logfile b1/build.log deblur_1.1.1-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest, sortmerna (>> 4~), vsearch, mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on sortmerna (>> 4~); however: Package sortmerna is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgflags2.2{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librocksdb9.10{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsnappy1v5{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sortmerna{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-pygments python3-tables ruby wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 98.7 MB of archives. After unpacking 492 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libgflags2.2 amd64 2.2.2-2 [83.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librocksdb9.10 amd64 9.10.0-1+b1 [3923 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.12.1-1+b2 [1471 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.8-1 [95.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [7295 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4 [20.5 MB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.16-1+b4 [174 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-6 [177 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b2 [2498 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4+b1 [1506 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 sortmerna amd64 4.3.7-2+b2 [585 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 vsearch amd64 2.29.1-1+b1 [433 kB] Fetched 98.7 MB in 6s (17.1 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. 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Preparing to unpack .../116-vsearch_2.29.1-1+b1_amd64.deb ... Unpacking vsearch (2.29.1-1+b1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up libicu72:amd64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up mafft (7.505-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up vsearch (2.29.1-1+b1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:amd64 (1.1.0-2+b6) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:amd64 (3.12.9-1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:amd64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:amd64 (1.1.3-1+b1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 22 06:03:34 UTC 2025. Universal Time is now: Sat Feb 22 06:03:34 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.4.1-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:amd64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:amd64 (3.13.2-1) ... Setting up librocksdb9.10 (9.10.0-1+b1) ... Setting up libpython3-stdlib:amd64 (3.13.1-2) ... Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1+b2) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sortmerna (4.3.7-2+b2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-hdmedians (0.14.2-6) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-h5py-serial (3.12.1-1+b2) ... Setting up python3-h5py (3.12.1-1) ... Setting up dh-python (6.20250108) ... Setting up python3-biom-format (2.1.16-1+b4) ... Setting up python3-skbio (0.6.2-4+b1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../deblur_1.1.1-4_source.changes dpkg-buildpackage: info: source package deblur dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.12 copying and adjusting scripts/deblur -> build/scripts-3.12 changing mode of build/scripts-3.12/deblur from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.13 copying and adjusting scripts/deblur -> build/scripts-3.13 changing mode of build/scripts-3.13/deblur from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build; python3.12 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 1.27s ================= I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build; python3.13 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 0.81s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/deblur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_script.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_support_files.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_workflow.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_sequence.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/parallel_deblur.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/workflow.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc running install_egg_info running egg_info creating deblur.egg-info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt writing manifest file 'deblur.egg-info/SOURCES.txt' reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin copying build/scripts-3.12/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_support_files.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_script.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_workflow.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_sequence.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/parallel_deblur.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/sequence.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/deblurring.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/deblurring.py to deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_script.py to test_script.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/sequence.py to sequence.cpython-313.pyc running install_egg_info running egg_info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'deblur' in '../deblur_1.1.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../deblur_1.1.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../deblur_1.1.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1657061 and its subdirectories I: Current time: Fri Feb 21 18:04:55 -12 2025 I: pbuilder-time-stamp: 1740204295 Sat Feb 22 06:04:56 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sat Feb 22 06:04:56 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sat Feb 22 06:04:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sat Feb 22 06:04:56 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-flqxHv' ==================================================================================== Fri Mar 27 12:27:57 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 deblur trixie /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t 1.1.1-4" as arguments. Fri Mar 27 12:27:57 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ZPQxtIYG" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 12:27:58 UTC 2026 I: Downloading source for trixie/deblur=1.1.1-4 Reading package lists... NOTICE: 'deblur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/deblur.git Please use: git clone https://salsa.debian.org/med-team/deblur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3908 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (dsc) [2252 B] Get:2 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (tar) [3901 kB] Get:3 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (diff) [4280 B] Fetched 3908 kB in 0s (13.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'deblur' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/deblur.git Please use: git clone https://salsa.debian.org/med-team/deblur.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3908 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (dsc) [2252 B] Get:2 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (tar) [3901 kB] Get:3 http://deb.debian.org/debian trixie/main deblur 1.1.1-4 (diff) [4280 B] Fetched 3908 kB in 0s (13.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building deblur in trixie on amd64 on infom02-amd64 now. Date: Fri Mar 27 12:27:58 UTC 2026 Date UTC: Fri Mar 27 12:27:58 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_IsTX + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' deblur = debian-installer -o deblur = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' deblur = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_IsTX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2 --logfile b2/build.log deblur_1.1.1-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 28 02:27:58 +14 2026 I: pbuilder-time-stamp: 1774614478 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [deblur_1.1.1-4.dsc] I: copying [./deblur_1.1.1.orig.tar.gz] I: copying [./deblur_1.1.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./deblur_1.1.1-4.dsc: unsupported subcommand dpkg-source: info: extracting deblur in deblur-1.1.1 dpkg-source: info: unpacking deblur_1.1.1.orig.tar.gz dpkg-source: info: unpacking deblur_1.1.1-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 27 12:28 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=9c42c05fe8794b08849604fff7b99d0a LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1144472 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_IsTX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2 --logfile b2/build.log deblur_1.1.1-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-skbio, python3-biom-format, python3-pytest, sortmerna (>> 4~), vsearch, mafft dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-skbio; however: Package python3-skbio is not installed. pbuilder-satisfydepends-dummy depends on python3-biom-format; however: Package python3-biom-format is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on sortmerna (>> 4~); however: Package sortmerna is not installed. pbuilder-satisfydepends-dummy depends on vsearch; however: Package vsearch is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgflags2.2{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhdf5-310{a} libhdf5-hl-310{a} libicu72{a} libidn2-0{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} libldap2{a} liblzf1{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librocksdb9.10{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsnappy1v5{a} libssh2-1t64{a} libssw0{a} libsz2{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-biom-format{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-dateutil{a} python3-decorator{a} python3-h5py{a} python3-h5py-serial{a} python3-hdmedians{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-natsort{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-patsy{a} python3-pkg-resources{a} python3-pluggy{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-scipy{a} python3-setuptools{a} python3-skbio{a} python3-statsmodels{a} python3-statsmodels-lib{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sortmerna{a} tzdata{a} vsearch{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-colorama python3-cvxopt python3-html5lib python3-jinja2 python3-joblib python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pil python3-pooch python3-pygments python3-tables ruby wget 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 98.7 MB of archives. After unpacking 492 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025a-2 [259 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 libpython3.12-minimal amd64 3.12.9-1 [817 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 python3.12-minimal amd64 3.12.9-1 [2163 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 openssl amd64 3.4.1-1 [1427 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 ca-certificates all 20241223 [164 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 26 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-5 [294 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-3 [539 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 64 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 68 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get: 71 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB] Get: 72 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB] Get: 73 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB] Get: 74 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 75 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get: 76 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 77 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 78 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 79 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 80 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 81 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 82 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.12.1-2 [369 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 libgflags2.2 amd64 2.2.2-2 [83.5 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-16 [836 kB] Get: 85 http://deb.debian.org/debian trixie/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B] Get: 86 http://deb.debian.org/debian trixie/main amd64 libhdf5-310 amd64 1.14.5+repack-3 [1344 kB] Get: 87 http://deb.debian.org/debian trixie/main amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [69.3 kB] Get: 88 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 89 http://deb.debian.org/debian trixie/main amd64 liblbfgsb0 amd64 3.0+dfsg.4-1+b2 [29.4 kB] Get: 90 http://deb.debian.org/debian trixie/main amd64 liblzf1 amd64 3.6-4+b3 [10.1 kB] Get: 91 http://deb.debian.org/debian trixie/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 92 http://deb.debian.org/debian trixie/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get: 93 http://deb.debian.org/debian trixie/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get: 94 http://deb.debian.org/debian trixie/main amd64 libpython3.12-stdlib amd64 3.12.9-1 [1974 kB] Get: 95 http://deb.debian.org/debian trixie/main amd64 libsnappy1v5 amd64 1.2.1-1+b1 [29.6 kB] Get: 96 http://deb.debian.org/debian trixie/main amd64 librocksdb9.10 amd64 9.10.0-1+b1 [3923 kB] Get: 97 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 98 http://deb.debian.org/debian trixie/main amd64 mafft amd64 7.505-1 [1078 kB] Get: 99 http://deb.debian.org/debian trixie/main amd64 python3.12 amd64 3.12.9-1 [681 kB] Get: 100 http://deb.debian.org/debian trixie/main amd64 python3-all amd64 3.13.1-2 [1056 B] Get: 101 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB] Get: 102 http://deb.debian.org/debian trixie/main amd64 python3-h5py-serial amd64 3.12.1-1+b2 [1471 kB] Get: 103 http://deb.debian.org/debian trixie/main amd64 python3-h5py all 3.12.1-1 [15.0 kB] Get: 104 http://deb.debian.org/debian trixie/main amd64 python3-click all 8.1.8-1 [95.2 kB] Get: 105 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 106 http://deb.debian.org/debian trixie/main amd64 python3-pytz all 2025.1-3 [150 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 python3-tz all 2025.1-3 [4004 B] Get: 108 http://deb.debian.org/debian trixie/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-8 [7295 kB] Get: 109 http://deb.debian.org/debian trixie/main amd64 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 110 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 111 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.14.1-4 [20.5 MB] Get: 112 http://deb.debian.org/debian trixie/main amd64 python3-biom-format amd64 2.1.16-1+b4 [174 kB] Get: 113 http://deb.debian.org/debian trixie/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 114 http://deb.debian.org/debian trixie/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 115 http://deb.debian.org/debian trixie/main amd64 python3-charset-normalizer amd64 3.4.1-1 [142 kB] Get: 116 http://deb.debian.org/debian trixie/main amd64 python3-hdmedians amd64 0.14.2-6 [177 kB] Get: 117 http://deb.debian.org/debian trixie/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 118 http://deb.debian.org/debian trixie/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 119 http://deb.debian.org/debian trixie/main amd64 python3-natsort all 8.0.2-2 [39.0 kB] Get: 120 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get: 121 http://deb.debian.org/debian trixie/main amd64 python3-patsy all 1.0.1-1 [172 kB] Get: 122 http://deb.debian.org/debian trixie/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 123 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.4-1 [250 kB] Get: 124 http://deb.debian.org/debian trixie/main amd64 python3-urllib3 all 2.3.0-1 [114 kB] Get: 125 http://deb.debian.org/debian trixie/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 126 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels-lib amd64 0.14.4+dfsg-1+b2 [2498 kB] Get: 127 http://deb.debian.org/debian trixie/main amd64 python3-statsmodels all 0.14.4+dfsg-1 [4825 kB] Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4+b1 [1506 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 sortmerna amd64 4.3.7-2+b2 [585 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 vsearch amd64 2.29.1-1+b1 [433 kB] Fetched 98.7 MB in 2s (62.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:amd64 (3.13.2-1) ... Setting up libexpat1:amd64 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20192 files and directories currently installed.) 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21202 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.1-2_amd64.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:amd64. Preparing to unpack .../001-libpython3.12-minimal_3.12.9-1_amd64.deb ... Unpacking libpython3.12-minimal:amd64 (3.12.9-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../002-python3.12-minimal_3.12.9-1_amd64.deb ... Unpacking python3.12-minimal (3.12.9-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../004-openssl_3.4.1-1_amd64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../005-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../026-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../027-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../028-libunistring5_1.3-1_amd64.deb ... Unpacking libunistring5:amd64 (1.3-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../029-libicu72_72.1-6_amd64.deb ... Unpacking libicu72:amd64 (72.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../035-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../036-python3-more-itertools_10.6.0-1_all.deb ... Unpacking python3-more-itertools (10.6.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../037-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../038-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../039-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../040-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../041-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../042-python3-pkg-resources_75.6.0-1_all.deb ... Unpacking python3-pkg-resources (75.6.0-1) ... Selecting previously unselected package python3-jaraco.text. 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Setting up libsnappy1v5:amd64 (1.2.1-1+b1) ... Setting up libkrb5support0:amd64 (1.21.3-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Mar 27 12:30:35 UTC 2026. Universal Time is now: Fri Mar 27 12:30:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:amd64 (3.12.1-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up liblzf1:amd64 (3.6-4+b3) ... Setting up libunistring5:amd64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-4) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:amd64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.6.0-2) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:amd64 (1.21.3-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up openssl (3.4.1-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:amd64 (2.6.9+dfsg-1) ... Setting up libsz2:amd64 (1.1.3-1+b1) ... Setting up libgflags2.2 (2.2.2-2) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... 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Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sortmerna (4.3.7-2+b2) ... Setting up python3-natsort (8.0.2-2) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-hdmedians (0.14.2-6) ... Setting up libnsl2:amd64 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-statsmodels-lib:amd64 (0.14.4+dfsg-1+b2) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-scipy (1.14.1-4) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:amd64 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:amd64 (8.12.1-2) ... Setting up python3-charset-normalizer (3.4.1-1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-tz (2025.1-3) ... Setting up python3-patsy (1.0.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... Setting up python3-statsmodels (0.14.4+dfsg-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-h5py-serial (3.12.1-1+b2) ... Setting up python3-h5py (3.12.1-1) ... Setting up dh-python (6.20250108) ... Setting up python3-biom-format (2.1.16-1+b4) ... Setting up python3-skbio (0.6.2-4+b1) ... Processing triggers for libc-bin (2.40-7) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../deblur_1.1.1-4_source.changes dpkg-buildpackage: info: source package deblur dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.12 copying and adjusting scripts/deblur -> build/scripts-3.12 changing mode of build/scripts-3.12/deblur from 644 to 755 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files running build_scripts creating build/scripts-3.13 copying and adjusting scripts/deblur -> build/scripts-3.13 changing mode of build/scripts-3.13/deblur from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build; python3.12 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 4.03s ================= I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.biom' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/final.s4.seqs.fa' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/no_trim_results.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/readme.txt' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_bad.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_empty.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_illumina1.3.fq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/seqs_s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s1.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s2.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s3.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s4.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/simset.s5.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq' I: pybuild base:311: cd /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build; python3.13 -m pytest deblur/test/test_*.py -k ' not test_workflow and not test_parallel_deblur and not test_workflow and not test_build_index_sortmerna and not test_build_index_sortmerna_fail and not test_launch_workflow and not test_launch_workflow_incorrect_trim and not test_launch_workflow_skip_trim and not test_remove_artifacts_from_biom_table and not test_remove_artifacts_seqs and not test_remove_artifacts_seqs_index_prebuilt and not test_remove_artifacts_seqs_negate ' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 rootdir: /build/reproducible-path/deblur-1.1.1 plugins: typeguard-4.4.1 collected 53 items / 31 deselected / 22 selected deblur/test/test_deblurring.py ........... [ 50%] deblur/test/test_mixedcase.py . [ 54%] deblur/test/test_sequence.py ......... [ 95%] deblur/test/test_support_files.py . [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_error_empty /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:53: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('No sequences found in fasta file!') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_deblur_noseqs /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py:116: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead logger.warn('no sequences deblurred') .pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py::DeblurringTests::test_get_sequences_empty_file /usr/lib/python3/dist-packages/skbio/io/registry.py:536: FormatIdentificationWarning: <_io.BufferedReader name='/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta'> does not look like a fasta file warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 22 passed, 31 deselected, 5 warnings in 2.72s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/deblur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_script.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_support_files.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_workflow.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_sequence.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/parallel_deblur.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/workflow.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/workflow.py to workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-312.pyc running install_egg_info running egg_info creating deblur.egg-info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt writing manifest file 'deblur.egg-info/SOURCES.txt' reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin copying build/scripts-3.12/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/deblur-1.1.1/debian/deblur /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running build_scripts running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_sequence.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_script.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_support_files.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_workflow.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/parallel_deblur.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/sequence.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/deblurring.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/sequence.py to sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/workflow.py to workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_script.py to test_script.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/deblurring.py to deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-313.pyc running install_egg_info running egg_info writing deblur.egg-info/PKG-INFO writing dependency_links to deblur.egg-info/dependency_links.txt writing requirements to deblur.egg-info/requires.txt writing top-level names to deblur.egg-info/top_level.txt reading manifest file 'deblur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'COPYING.txt' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'deblur.egg-info/SOURCES.txt' Copying deblur.egg-info to /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur-1.1.1.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/deblur -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin changing mode of /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/bin/deblur to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'deblur' in '../deblur_1.1.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../deblur_1.1.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../deblur_1.1.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from deblur-1.1.1/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1144472 and its subdirectories I: Current time: Sat Mar 28 02:33:00 +14 2026 I: pbuilder-time-stamp: 1774614780 + false + set +x Fri Mar 27 12:33:00 UTC 2026 I: Signing ./b2/deblur_1.1.1-4_amd64.buildinfo as deblur_1.1.1-4_amd64.buildinfo.asc Fri Mar 27 12:33:00 UTC 2026 I: Signed ./b2/deblur_1.1.1-4_amd64.buildinfo as ./b2/deblur_1.1.1-4_amd64.buildinfo.asc Fri Mar 27 12:33:00 UTC 2026 - build #2 for deblur/trixie/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Fri Mar 27 12:33:00 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-ZPQxtIYG, removing. /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t: total 132 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 06:04 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 06:10 b2 -rw-r--r-- 1 jenkins jenkins 2252 Feb 16 18:10 deblur_1.1.1-4.dsc -rw------- 1 jenkins jenkins 118543 Feb 22 06:04 rbuildlog.TXsyJ0W /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1: total 2092 -rw-r--r-- 1 jenkins jenkins 114911 Feb 22 06:04 build.log -rw-r--r-- 1 jenkins jenkins 4280 Feb 22 06:04 deblur_1.1.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2252 Feb 22 06:04 deblur_1.1.1-4.dsc -rw-r--r-- 1 jenkins jenkins 1970592 Feb 22 06:04 deblur_1.1.1-4_all.deb -rw-r--r-- 1 jenkins jenkins 7821 Feb 22 06:04 deblur_1.1.1-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8703 Feb 22 06:04 deblur_1.1.1-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1669 Feb 22 06:04 deblur_1.1.1-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1823 Feb 22 06:04 deblur_1.1.1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2: total 2084 -rw-r--r-- 1 jenkins jenkins 116846 Feb 22 06:10 build.log -rw-r--r-- 1 jenkins jenkins 4280 Feb 22 06:10 deblur_1.1.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2252 Feb 22 06:10 deblur_1.1.1-4.dsc -rw-r--r-- 1 jenkins jenkins 1970592 Feb 22 06:10 deblur_1.1.1-4_all.deb -rw-r--r-- 1 jenkins jenkins 7824 Feb 22 06:10 deblur_1.1.1-4_amd64.buildinfo -rw-r--r-- 1 jenkins jenkins 8706 Feb 22 06:10 deblur_1.1.1-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1669 Feb 22 06:10 deblur_1.1.1-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1823 Feb 22 06:10 deblur_1.1.1-4_source.changes Sat Feb 22 06:10:01 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sat Feb 22 06:10:01 UTC 2025 I: deblur_1.1.1-4_amd64.changes: Format: 1.8 Date: Sun, 16 Feb 2025 18:48:17 +0100 Source: deblur Binary: deblur Architecture: all Version: 1.1.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: deblur - deconvolution for Illumina amplicon sequencing Closes: 1091151 Changes: deblur (1.1.1-4) unstable; urgency=medium . * Team upload. * d/control: limit sortmerna build-dep to amd64. The dependency is only needed for the test suite, and given the current state of the test suite, it is not strictly needed; the package is kept to preserve the relation between the two packages. (Closes: #1091151) * d/salsa-ci.yml: skip build on i386. The module is inoperative anywhere else than on 64-bit little-endian due to the dependency on python-skbio. Since the package is otherwise arch-all, there is not much else that can be done on 32-bit other than ignoring tests. This is not a regression, contrary to the problem of buildability on arm64. Checksums-Sha1: 66f7df50a20b20f3d7b21a2cc3babf4da39f7a90 1970592 deblur_1.1.1-4_all.deb bf74ad3d081443f2d7fbec18f32bc2b318870af3 7821 deblur_1.1.1-4_amd64.buildinfo Checksums-Sha256: f672c1dea09876aacaadd0c4cdbc1bc4b4efc46793e0ffdbf3f0dba9820073b0 1970592 deblur_1.1.1-4_all.deb 34b0e40e6917fc11bc6ab305cc651fd86be2c56ffc7d8828209d75625f2b2b5f 7821 deblur_1.1.1-4_amd64.buildinfo Files: eb2aecb3d1f994222ef1ada843b80c71 1970592 science optional deblur_1.1.1-4_all.deb d9cf095b59a781a3a7eba2007db46d90 7821 science optional deblur_1.1.1-4_amd64.buildinfo Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 06:04:56.051308268 +0000 +++ b2/build.log 2025-02-22 06:10:01.149519121 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 21 18:02:17 -12 2025 -I: pbuilder-time-stamp: 1740204137 +I: Current time: Sat Mar 28 02:27:58 +14 2026 +I: pbuilder-time-stamp: 1774614478 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,51 +22,83 @@ dpkg-source: info: unpacking deblur_1.1.1-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 27 12:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='599e7c2695924627a723db4efd35bcf2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1657061' - PS1='# ' - PS2='> ' + INVOCATION_ID=9c42c05fe8794b08849604fff7b99d0a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1144472 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_PE6V --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1 --logfile b1/build.log deblur_1.1.1-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/pbuilderrc_IsTX --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2 --logfile b2/build.log deblur_1.1.1-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1657061/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -250,7 +282,7 @@ Get: 128 http://deb.debian.org/debian trixie/main amd64 python3-skbio amd64 0.6.2-4+b1 [1506 kB] Get: 129 http://deb.debian.org/debian trixie/main amd64 sortmerna amd64 4.3.7-2+b2 [585 kB] Get: 130 http://deb.debian.org/debian trixie/main amd64 vsearch amd64 2.29.1-1+b1 [433 kB] -Fetched 98.7 MB in 6s (17.1 MB/s) +Fetched 98.7 MB in 2s (62.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19858 files and directories currently installed.) @@ -682,8 +714,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Feb 22 06:03:34 UTC 2025. -Universal Time is now: Sat Feb 22 06:03:34 UTC 2025. +Local time is now: Fri Mar 27 12:30:35 UTC 2026. +Universal Time is now: Fri Mar 27 12:30:35 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -808,7 +840,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../deblur_1.1.1-4_source.changes +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/deblur-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../deblur_1.1.1-4_source.changes dpkg-buildpackage: info: source package deblur dpkg-buildpackage: info: source version 1.1.1-4 dpkg-buildpackage: info: source distribution unstable @@ -855,21 +891,21 @@ running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur +copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur -copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test -copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test -copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test -copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test +copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test +copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test +copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files running build_scripts @@ -882,21 +918,21 @@ running build running build_py creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur +copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur copying deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur -copying deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test -copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test -copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test -copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test +copying deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test +copying deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test +copying deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test copying deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files copying deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files running build_scripts @@ -962,7 +998,7 @@ warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================ 22 passed, 31 deselected, 5 warnings in 1.27s ================= +================ 22 passed, 31 deselected, 5 warnings in 4.03s ================= I: pybuild pybuild:308: cp -Rv /build/reproducible-path/deblur-1.1.1/deblur/test/data /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test '/build/reproducible-path/deblur-1.1.1/deblur/test/data' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data' '/build/reproducible-path/deblur-1.1.1/deblur/test/data/70_otus.fasta' -> '/build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta' @@ -1021,7 +1057,7 @@ warn( -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================ 22 passed, 31 deselected, 5 warnings in 0.81s ================= +================ 22 passed, 31 deselected, 5 warnings in 2.72s ================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1049,81 +1085,81 @@ running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars/split +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_script.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_support_files.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_workflow.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/__pycache__/test_sequence.cpython-312-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/support_files/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/parallel_deblur.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/workflow.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/sequence.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.12_deblur/build/deblur/__pycache__/deblurring.cpython-312.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__pycache__ +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/workflow.py to workflow.cpython-312.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-312.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-312.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-312.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-312.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-312.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/test/test_script.py to test_script.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/support_files/__init__.py to __init__.cpython-312.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/deblurring.py to deblurring.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-312.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.12/dist-packages/deblur/sequence.py to sequence.cpython-312.pyc running install_egg_info running egg_info creating deblur.egg-info @@ -1169,81 +1205,81 @@ running install_lib creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_workflow.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/readme.txt -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s1.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_empty.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/70_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s4.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB8.640193.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/split/1.SKB7.640196.fastq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars/split +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB8.640193.fastq.trim.derep.no_artifacts.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/usecase_mixedchars/1.SKB7.640196.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data/usecase_mixedchars copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.seqs.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/simset.s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/final.s4.biom -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s3.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge2.fasta.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/testmerge.fastq.trim.derep.no_artifacts.msa.deblur.no_chimeras -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_bad.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_illumina1.3.fq -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/no_trim_results.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_mixedcase.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s5.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/data/seqs_s2.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/data copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_support_files.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_support_files.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_sequence.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_script.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_support_files.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_workflow.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_sequence.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_deblurring.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_parallel_deblur.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/__pycache__/test_mixedcase.cpython-313-pytest-8.3.4.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/test/test_script.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/artifacts.fa -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/88_otus.fasta -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/support_files/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/deblurring.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__init__.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/parallel_deblur.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/sequence.py -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur creating /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/parallel_deblur.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ +copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/sequence.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/deblurring.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ -copying /build/reproducible-path/deblur-1.1.1/.pybuild/cpython3_3.13_deblur/build/deblur/__pycache__/workflow.cpython-313.pyc -> /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__pycache__ +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/sequence.py to sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/workflow.py to workflow.cpython-313.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/deblurring.py to deblurring.cpython-313.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_script.py to test_script.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_workflow.py to test_workflow.cpython-313.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_deblurring.py to test_deblurring.cpython-313.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_mixedcase.py to test_mixedcase.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_support_files.py to test_support_files.cpython-313.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_sequence.py to test_sequence.cpython-313.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_parallel_deblur.py to test_parallel_deblur.cpython-313.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/test/test_script.py to test_script.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/support_files/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/deblurring.py to deblurring.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/parallel_deblur.py to parallel_deblur.cpython-313.pyc -byte-compiling /build/reproducible-path/deblur-1.1.1/debian/deblur/usr/lib/python3.13/dist-packages/deblur/sequence.py to sequence.cpython-313.pyc running install_egg_info running egg_info writing deblur.egg-info/PKG-INFO @@ -1286,12 +1322,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1144472/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1657061 and its subdirectories -I: Current time: Fri Feb 21 18:04:55 -12 2025 -I: pbuilder-time-stamp: 1740204295 +I: removing directory /srv/workspace/pbuilder/1144472 and its subdirectories +I: Current time: Sat Mar 28 02:33:00 +14 2026 +I: pbuilder-time-stamp: 1774614780 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/deblur_1.1.1-4.diff: 91.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/deblur_1.1.1-4.diff.gz b2/build.log: 87.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 88.2% -- replaced with stdout Sat Feb 22 06:10:02 UTC 2025 I: diffoscope 289 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_deblur_trixie_amd64_1740204602 + touch /var/log/reproducible-builds/diffoscope_stamp_deblur_trixie_amd64_1740204602 + RESULT=0 + systemd-run '--description=diffoscope on deblur/1.1.1-4 in trixie/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_37-51508 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t --run-session -c jenkins-reproducible-trixie-diffoscope-2ffb6f73-fcb1-4a2c-934f-a3c9aeedd1d5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/dbd-tmp-G0oFUP3 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1/deblur_1.1.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2/deblur_1.1.1-4_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_37-51508.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/deblur_1.1.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b1/deblur_1.1.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.NSlhia0t/b2/deblur_1.1.1-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 245ms CPU time consumed: 244ms _ _ _ __| | ___| |__ | |_ _ _ __ / _` |/ _ \ '_ \| | | | | '__| | (_| | __/ |_) | | |_| | | \__,_|\___|_.__/|_|\__,_|_| Sat Feb 22 06:10:03 UTC 2025 I: diffoscope 289 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 06:10:03 UTC 2025 I: deblur from trixie built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 06:10:04] INFO: Starting at 2025-02-22 06:10:04.086722 [2025-02-22 06:10:04] INFO: Generating the pages of 1 package(s) [2025-02-22 06:10:04] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/deblur_1.1.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/deblur_1.1.1-3.diff.gz is missing [2025-02-22 06:10:04] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/deblur_1.1.1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/deblur_1.1.1-4.diff.gz is missing [2025-02-22 06:10:04] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/amd64/deblur didn't produce a buildlog, even though it has been built. [2025-02-22 06:10:04] INFO: Finished at 2025-02-22 06:10:04.321383, took: 0:00:00.234667 Sat Feb 22 06:10:04 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/amd64/deblur.html Sat Feb 22 06:10:04 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 06:10:04 UTC 2025 I: Submitting 12K b1/deblur_1.1.1-4_amd64.buildinfo.asc https://buildinfo.debian.net/bf74ad3d081443f2d7fbec18f32bc2b318870af3/deblur_1.1.1-4_all Sat Feb 22 06:10:05 UTC 2025 I: Submitting 12K b2/deblur_1.1.1-4_amd64.buildinfo.asc https://buildinfo.debian.net/308cbdf36dd31215c1f3856f7c48b677aee84157/deblur_1.1.1-4_all Sat Feb 22 06:10:06 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 06:10:06 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 06:10:06 UTC 2025 I: Removing signed deblur_1.1.1-4_amd64.buildinfo.asc files: removed './b1/deblur_1.1.1-4_amd64.buildinfo.asc' removed './b2/deblur_1.1.1-4_amd64.buildinfo.asc' 1740204606 amd64 trixie deblur Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/deblur_1.1.1-4.rbuild.log: 86.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/amd64/deblur_1.1.1-4.rbuild.log.gz [2025-02-22 06:10:06] INFO: Starting at 2025-02-22 06:10:06.825012 [2025-02-22 06:10:06] INFO: Generating the pages of 1 package(s) [2025-02-22 06:10:07] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/deblur_1.1.1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/deblur_1.1.1-3.diff.gz is missing [2025-02-22 06:10:07] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/deblur_1.1.1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/deblur_1.1.1-4.diff.gz is missing [2025-02-22 06:10:07] INFO: Finished at 2025-02-22 06:10:07.066265, took: 0:00:00.241257 All cleanup done. Sat Feb 22 06:10:07 UTC 2025 - total duration: 0h 8m 4s. Sat Feb 22 06:10:07 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-TX1Pjafu, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 7.618s CPU time consumed: 6.995s