Running as unit: rb-build-amd64_37-82743.service; invocation ID: c4dce41f7f0f482e8cd09136d687ac85 ==================================================================================== Sun Sep 14 22:43:10 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_37) on jenkins, called using "infom01-amd64 infom02-amd64" as arguments. Sun Sep 14 22:43:10 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-8QtAJoo6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 22:43:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Sep 14 22:43:10 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-KhZNiM' Sun Sep 14 22:43:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Sep 14 22:43:10 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-gMOMpS' ok, let's check if mshr is building anywhere yet… ok, mshr is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of mshr in unstable on amd64 on jenkins now. 1st build will be done on infom01-amd64.debian.net. 2nd build will be done on infom02-amd64.debian.net. ============================================================================= Sun Sep 14 22:43:29 UTC 2025 I: starting to build mshr/unstable/amd64 on jenkins on '2025-09-14 22:43' Sun Sep 14 22:43:29 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_37/82743/console.log 1757889809 amd64 unstable mshr Sun Sep 14 22:43:29 UTC 2025 I: Downloading source for unstable/mshr=2019.2.0~git20230811.ff54a68+dfsg1-5 --2025-09-14 22:43:29-- http://deb.debian.org/debian/pool/main/m/mshr/mshr_2019.2.0%7egit20230811.ff54a68%2bdfsg1-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3128 (3.1K) [text/prs.lines.tag] Saving to: ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc’ 0K ... 100% 162M=0s 2025-09-14 22:43:29 (162 MB/s) - ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc’ saved [3128/3128] --2025-09-14 22:43:29-- http://deb.debian.org/debian/pool/main/m/mshr/mshr_2019.2.0%7egit20230811.ff54a68%2bdfsg1-5.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 3128 (3.1K) [text/prs.lines.tag] Saving to: ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc’ 0K ... 100% 162M=0s 2025-09-14 22:43:29 (162 MB/s) - ‘mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc’ saved [3128/3128] Sun Sep 14 22:43:29 UTC 2025 I: mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mshr Binary: libmshr2019.2, libmshr-dev, libmshr-dev-common, python3-mshr, python3-mshr-real, libmshr64-2019.2, libmshr64-dev, python3-mshr64-real Architecture: any all Version: 2019.2.0~git20230811.ff54a68+dfsg1-5 Maintainer: Debian Science Maintainers Uploaders: Johannes Ring , Drew Parsons , Francesco Ballarin Homepage: https://fenicsproject.org Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/science-team/fenics/mshr Vcs-Git: https://salsa.debian.org/science-team/fenics/mshr.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest Build-Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev, libdolfin64-dev, python3-ffc, python3-numpy-dev, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real Package-List: libmshr-dev deb libdevel optional arch=any libmshr-dev-common deb libdevel optional arch=any libmshr2019.2 deb libs optional arch=any libmshr64-2019.2 deb libs optional arch=any libmshr64-dev deb libdevel optional arch=any python3-mshr deb python optional arch=all python3-mshr-real deb python optional arch=any python3-mshr64-real deb python optional arch=any Checksums-Sha1: 8abb2f4cf49293eb43c5e4161db4f1f66f1fde85 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz 7ef3a8c635d74121b029ea9b26cd8e770d8e669d 14352 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz Checksums-Sha256: ff8acee3a86db94d06007d5fe9b4144c1ec3c0c793cf3b67e1dc292440e71839 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz 0c91b0d4d1f82763afb1a47bb6314f5c6954dc5f1a60216046988d27b3e14b28 14352 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz Files: 18dcfc422441a7b9636f3774c1232fe6 122156 mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz 86dffc1f8c7e1ab5a5c21b97fd9d7702 14352 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- wsG7BAEBCgBvBYJoxRPpCRAB81/DPnOvjEcUAAAAAAAeACBzYWx0QG5vdGF0aW9u cy5zZXF1b2lhLXBncC5vcmcMHSmF0+i06rsB5Jt2DhxDEuMdbUcj2Y662Liq64yt rRYhBBtdBLHlB7vwNmniuAHzX8M+c6+MAADx2g//VbyyleL2gkCjr3exVoLmKq3M e3MMjFesAlDJEYusOhddhr0mybLn4U5P5VjFCjXXXS8q+EO+FK1Dou4A51lBQAI9 CwE6xUhmRfKlQLJ+LfbSg8AtFAJ7vupryrkB5BDMtHErsajJLhC8y8F0eADyijfX GRwxKaISvwXdFdYC49n+1ISGbIhs7Z9DZUryclbnk/HhXB62VoPIzwUBqcjRfQ+X rLUVQZtkEVKzemtVPvxY1lXhk+lU3WEJCbpS+HL60Uk9LsNp2zEEbtNHFpRHdDg2 SE+AjdzZNRvs+C9k1rb4ACCib/2WK4+VyenMWdwq2AhEGShQ+faZsxgUus5Fs21x +00dY4eecgyCXKHCUSzBIXqOydVwZRkvghDFYRI21z79gJJuEUn27XrcStY2CHk3 R7gBpaoarqx+9mqV+hJInuTn7wY+wLUJEveKGfdB+30F8u/wBhom9sOLuEZf7IXo v5lfFusSFZZUn9DZK10LgluZWiyYw0RKOvqElm1euZ2eJb67CcWBnh+8CQehvATx emaqeVeXQ7nK7ZGPTMrYKraoq7j1Sg8/hU6MhH0gE6Xi2lMjXFFFESNWrhXgKde8 d0gvXdPTYzHBNQmYtOBNkltRNFebi4Y92vNCgBzHFUDEqkPij6VraiAlQSQHsWoN jcbQSkxN6eWWYkLLBq4= =gXlv -----END PGP SIGNATURE----- Sun Sep 14 22:43:29 UTC 2025 I: Checking whether the package is not for us Sun Sep 14 22:43:29 UTC 2025 I: Starting 1st build on remote node infom01-amd64.debian.net. Sun Sep 14 22:43:29 UTC 2025 I: Preparing to do remote build '1' on infom01-amd64.debian.net. Sun Sep 14 22:43:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Sun Sep 14 22:43:29 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-ZeBikU' ==================================================================================== Sun Sep 14 22:43:30 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "1 mshr unstable /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO 2019.2.0~git20230811.ff54a68+dfsg1-5" as arguments. Sun Sep 14 22:43:30 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-3M5yiHy6" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Sep 14 22:43:30 UTC 2025 I: Downloading source for unstable/mshr=2019.2.0~git20230811.ff54a68+dfsg1-5 Reading package lists... NOTICE: 'mshr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/mshr.git Please use: git clone https://salsa.debian.org/science-team/fenics/mshr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (dsc) [3128 B] Get:2 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (tar) [122 kB] Get:3 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (diff) [14.4 kB] Fetched 140 kB in 0s (1231 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mshr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/mshr.git Please use: git clone https://salsa.debian.org/science-team/fenics/mshr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (dsc) [3128 B] Get:2 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (tar) [122 kB] Get:3 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (diff) [14.4 kB] Fetched 140 kB in 0s (1231 kB/s) Download complete and in download only mode ============================================================================= Building mshr in unstable on amd64 on infom01-amd64 now. Date: Sun Sep 14 22:43:30 UTC 2025 Date UTC: Sun Sep 14 22:43:30 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 10:43:30 -12 2025 I: pbuilder-time-stamp: 1757889810 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc: no acceptable signature found dpkg-source: info: extracting mshr in mshr-2019.2.0~git20230811.ff54a68+dfsg1 dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_controls.diff dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying CGAL_6_compatibility.diff I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='399f18d421f447fe81d46860d3b82cdc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2919999' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_zmPA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1 --logfile b1/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev, libdolfin64-dev, python3-ffc, python3-numpy-dev, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on libmpfr-dev; however: Package libmpfr-dev is not installed. pbuilder-satisfydepends-dummy depends on libgmp-dev; however: Package libgmp-dev is not installed. pbuilder-satisfydepends-dummy depends on libcgal-dev (>= 6.0~); however: Package libcgal-dev is not installed. pbuilder-satisfydepends-dummy depends on libtet1.5-dev; however: Package libtet1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin-dev; however: Package libdolfin-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin64-dev; however: Package libdolfin64-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc; however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev; however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-64-real; however: Package python3-petsc4py-64-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-64-real; however: Package python3-slepc4py-64-real is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gcc-14-base{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libblas64-3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcgal-dev{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfin-dev{a} libdolfin-dev-common{a} libdolfin2019.2t64{a} libdolfin64-2019.2t64{a} libdolfin64-dev{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran-15-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libhypre64m-2.32.0{a} libhypre64m-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblapack64-3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmpfr-dev{a} libmumps-5.7{a} libmumps-64pord-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmumps64-dev{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenblas64-0{a} libopenblas64-0-pthread{a} libopenblas64-dev{a} libopenblas64-pthread-dev{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpetsc64-real3.22{a} libpetsc64-real3.22-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libslepc64-real3.22{a} libslepc64-real3.22-dev{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtet1.5{a} libtet1.5-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-dev{a} libz3-4{a} libze1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python-petsc4py-doc{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-dijitso{a} python3-ffc{a} python3-fiat{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-petsc4py{a} python3-petsc4py-64-real{a} python3-petsc4py-64-real3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-64-real{a} python3-slepc4py-64-real3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-sympy{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl-legacy{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} swig{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libjson-xs-perl libldap-common libmail-sendmail-perl libpetsc-complex-dev libpetsc-real-dev libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-pil python3-sphinx wget xauth zsh 0 packages upgraded, 369 newly installed, 0 to remove and 0 not upgraded. Need to get 429 MB of archives. After unpacking 2027 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.16.0-2 [78.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:10.0p1-8 [986 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.16.0-1 [437 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-1 [12.0 MB] Get: 69 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.2.0-4 [886 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-4 [78.8 MB] Get: 87 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.2.0-4 [17.9 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 89 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.11.0-2 [67.1 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.11.0-2 [211 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-22+b3 [23.6 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-6 [120 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libblas64-3 amd64 3.12.1-7 [205 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-5 [235 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-5 [236 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-5 [241 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-5 [247 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 129 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-5 [231 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-5 [239 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 134 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-5 [286 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-5 [231 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-5 [232 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-5 [302 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5 [265 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-5 [541 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-5 [590 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 147 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.2-1 [164 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.19.0+ds-1 [1336 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.12.2-1 [23.5 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.8-9 [3258 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-5 [276 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.8-9 [107 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.11.0-2 [110 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.11.0-2 [235 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 56.1-1 [654 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.19-1 [36.5 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-5 [416 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.5.4-5 [168 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.12.2-1 [257 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.8-9 [203 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.8-9 [1228 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 187 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-5 [296 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-5 [355 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-5 [385 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 193 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-5 [273 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-5 [280 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 197 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-5 [235 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-5 [237 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 200 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.41-12 [7341 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libmpfr-dev amd64 4.2.2-2 [283 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libcgal-dev amd64 6.0.1-1 [5115 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.11.0+dfsg-2 [703 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.16.0-1 [568 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.11.0+dfsg-2 [101 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-21 [223 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-4 [1518 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.7-1 [660 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5.1 [655 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-5 [1803 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.11.0+dfsg-2 [104 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 246 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.11.0+dfsg-2 [164 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [174 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.11.0+dfsg-2 [309 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.5+dfsg1-2+b2 [8958 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-6 [99.9 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1+b1 [1398 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2005 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-4 [125 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-4 [72.7 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-4 [47.7 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-4 [3433 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-4 [18.8 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.11.0+dfsg-2 [58.8 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.11.0+dfsg-2 [50.8 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.11.0+dfsg-2 [72.2 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.11.0+dfsg-2 [78.1 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.11.0+dfsg-2 [1598 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.7-1 [411 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.7-1 [1583 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.1.0-5 [797 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-5 [24.8 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-7 [70.2 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-ufl-legacy all 1:2022.3.0-3 [158 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-4 [232 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.7-1 [1380 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 289 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2025.07.22-1 [47.5 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2025.07.22-1 [51.0 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.3-1 [8812 B] Get: 296 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.1+dfsg1-2 [22.0 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5.1 [960 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.5+dfsg1-2 [310 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-5 [2096 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.24.0-3 [15.4 MB] Get: 311 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.24.0-3 [55.5 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7965 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-6 [112 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6381 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [53.2 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0-pthread amd64 0.3.30+ds-3 [7235 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 liblapack64-3 amd64 3.12.1-7 [2658 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libhypre64m-2.32.0 amd64 2.32.0-5 [1652 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libmumps-64pord-5.7 amd64 5.7.3-3+b1 [1963 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22 amd64 3.22.5+dfsg1-2+b2 [8868 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22 amd64 3.22.2+dfsg1-1+b1 [1394 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2001 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0 amd64 0.3.30+ds-3 [43.5 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libopenblas64-pthread-dev amd64 0.3.30+ds-3 [5359 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libopenblas64-dev amd64 0.3.30+ds-3 [43.5 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libhypre64m-dev amd64 2.32.0-5 [1924 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libmumps64-dev amd64 5.7.3-3+b1 [1861 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7961 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6426 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [45.8 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 338 http://deb.debian.org/debian unstable/main amd64 libtet1.5 amd64 1.5.0-5+b2 [239 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libtet1.5-dev amd64 1.5.0-5+b2 [29.9 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.13.6-2 [205 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.4-2 [778 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 347 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 358 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.3.0-1 [1503 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.4-2 [1267 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.4-2 [11.1 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real3.22 amd64 3.22.4-2 [1265 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real all 3.22.4-2 [10.9 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.4-2 [11.2 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.13.6-2 [215 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.2-1 [6636 B] Get: 367 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real all 3.22.2-1 [6608 B] Get: 369 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.2-1 [6828 B] Fetched 429 MB in 9s (50.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_15.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../010-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Preparing to unpack .../019-libcbor0.10_0.10.2-2_amd64.deb ... Unpacking libcbor0.10:amd64 (0.10.2-2) ... Selecting previously unselected package libfido2-1:amd64. Preparing to unpack .../020-libfido2-1_1.16.0-2_amd64.deb ... Unpacking libfido2-1:amd64 (1.16.0-2) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../021-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../022-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../023-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../024-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../025-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../026-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package openssh-client. Preparing to unpack .../027-openssh-client_1%3a10.0p1-8_amd64.deb ... Unpacking openssh-client (1:10.0p1-8) ... Selecting previously unselected package m4. Preparing to unpack .../028-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../029-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../030-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. 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Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 22:48:48 UTC 2025. Universal Time is now: Sun Sep 14 22:48:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-5) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-5) ... Setting up libbtf2:amd64 (1:7.11.0+dfsg-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... 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Setting up libopenblas64-0-pthread:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-5) ... Setting up libaec-dev:amd64 (1.1.4-2) ... Setting up libcxsparse4:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-5) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libopenblas64-pthread-dev:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode Setting up liblapack64-3:amd64 (3.12.1-7) ... Setting up libgfortran-15-dev:amd64 (15.2.0-4) ... Setting up libmpfr-dev:amd64 (4.2.2-2) ... Setting up libcamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... 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Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.3-1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-5) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libopenblas64-0:amd64 (0.3.30+ds-3) ... Setting up libdrm2:amd64 (2.4.125-2) ... Setting up libnl-3-dev:amd64 (3.11.0-2) ... Setting up groff-base (1.23.0-9) ... Setting up libhwloc-dev:amd64 (2.12.2-1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-5) ... Setting up libsuperlu-dev:amd64 (7.0.1+dfsg1-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.125-2) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-5) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-2) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-4) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-6) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libopenblas64-dev:amd64 (0.3.30+ds-3) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libspqr4:amd64 (1:7.11.0+dfsg-2) ... Setting up python3.13 (3.13.7-1) ... Setting up openssh-client (1:10.0p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up python3 (3.13.7-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-5) ... Setting up python3-zipp (3.23.0-1) ... Setting up python-petsc4py-doc (3.22.4-2) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.11.0-2) ... Setting up libgnutls-dane0t64:amd64 (3.8.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libklu2:amd64 (1:7.11.0+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Setting up python3-ufl-legacy (1:2022.3.0-3) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up gfortran-15 (15.2.0-4) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:amd64 (3.8.10-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-fiat (2019.2.0~git20210419.7d418fa-7) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.16.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up python3.13-dev (3.13.7-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libibverbs-dev:amd64 (56.1-1) ... Setting up libparu1:amd64 (1:7.11.0+dfsg-2) ... Setting up pybind11-dev (2.13.6-2) ... Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcgal-dev:amd64 (6.0.1-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up python3-pybind11 (2.13.6-2) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libsuitesparse-dev:amd64 (1:7.11.0+dfsg-2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libcurl4-openssl-dev:amd64 (8.16.0-1) ... Setting up libucx0:amd64 (1.19.0+ds-1) ... Setting up libopenmpi40:amd64 (5.0.8-9) ... Setting up libptscotch-7.0:amd64 (7.0.7-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libparpack2t64:amd64 (3.9.1-6) ... Setting up libboost-mpi1.83.0 (1.83.0-5) ... Setting up openmpi-bin (5.0.8-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5.1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-5) ... Setting up python3-mpi4py (4.1.0-5) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5.1) ... Setting up libopenmpi-dev:amd64 (5.0.8-9) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre64m-2.32.0:amd64 (2.32.0-5) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-5) ... Setting up python3-ffc (2019.2.0~legacy20230509.35df986-4) ... Setting up libmumps-64pord-5.7:amd64 (5.7.3-3+b1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libpetsc64-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.22 (libpetsc64.so.3.22) in auto mode Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libhypre64m-dev:amd64 (2.32.0-5) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libslepc64-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.22 (libslepc64.so.3.22) in auto mode Setting up libmumps64-dev:amd64 (5.7.3-3+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.7-1) ... Setting up libparpack2-dev:amd64 (3.9.1-6) ... Setting up libpetsc-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-5) ... Setting up libptscotch-dev (7.0.7-1) ... Setting up python3-petsc4py-real3.22 (3.22.4-2) ... Setting up python3-petsc4py-64-real3.22 (3.22.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-5) ... Setting up python3-petsc4py-64-real (3.22.4-2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-4) ... Setting up libpetsc3.22-dev-common (3.22.5+dfsg1-2) ... Setting up python3-petsc4py (3.22.4-2) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-real (3.22.4-2) ... Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up python3-slepc4py-64-real3.22 (3.22.2-1+b1) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up python3-slepc4py-real3.22 (3.22.2-1+b1) ... Setting up libpetsc64-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.22 (petsc64-3.22) in auto mode Setting up python3-slepc4py (3.22.2-1) ... Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up python3-slepc4py-real (3.22.2-1) ... Setting up python3-slepc4py-64-real (3.22.2-1) ... Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libslepc64-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.22 (slepc64-3.22) in auto mode Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake \ --with python3 \ --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean rm -rf python/build* rm -rf python/mshr.egg-info rm -rf debian/tmp64 rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake \ --with python3 \ --no-parallel dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (3.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64" cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr.so.2019.2 -o libmshr.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/cmake -E cmake_symlink_library libmshr.so.2019.2.0.dev0 libmshr.so.2019.2 libmshr.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 90%] Built target mshr make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/depend make[4]: Entering 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95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable 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/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real 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CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles/mshr.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr64.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr64.so.2019.2 -o libmshr64.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/cmake -E cmake_symlink_library libmshr64.so.2019.2.0.dev0 libmshr64.so.2019.2 libmshr64.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 90%] Built target mshr make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles/mshrable.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_auto_test -O--buildsystem=cmake -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--no-parallel dh_prep -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=obj-x86_64-linux-gnu --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64 cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' set -e; \ for v in python3.13; do \ cd python; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp --install-layout=deb; \ PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64 --install-layout=deb; \ cd ..; \ done CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Configuring done (2.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64 running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. Can't stat debian/libmshr2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev-common: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI Can't stat debian/python3-mshr-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI Can't stat debian/libmshr64-2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr64-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI Can't stat debian/python3-mshr64-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_install -O--buildsystem=cmake -O--no-parallel dh_installdocs -O--buildsystem=cmake -O--no-parallel dh_installchangelogs -O--buildsystem=cmake -O--no-parallel dh_installexamples -O--buildsystem=cmake -O--no-parallel dh_installman -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a dh_numpy3 -a Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI mkdir -p debian/python3-mshr-real//usr/lib/mshr mv debian/python3-mshr-real/usr/lib/python3 debian/python3-mshr-real//usr/lib/mshr mkdir -p debian/python3-mshr64-real//usr/lib/mshr64 mv debian/python3-mshr64-real/usr/lib/python3 debian/python3-mshr64-real//usr/lib/mshr64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_python3 -O--buildsystem=cmake -O--no-parallel -Nlibmshr2019.2 -Nlibmshr-dev -Nlibmshr-dev-common -Npython3-mshr-real -Nlibmshr64-2019.2 -Nlibmshr64-dev -Npython3-mshr64-real dh_installsystemduser -O--buildsystem=cmake -O--no-parallel dh_perl -O--buildsystem=cmake -O--no-parallel dh_link -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel dh_compress -O--buildsystem=cmake -O--no-parallel dh_fixperms -O--buildsystem=cmake -O--no-parallel dh_missing -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off for amd64";; \ *) dh_dwz;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) dh_strip --no-automatic-dbgsym;; \ *) dh_strip;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_makeshlibs -a -O--buildsystem=cmake -O--no-parallel dh_shlibdeps -a -O--buildsystem=cmake -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \ -Vpybind11:Upstream-Version=2.13 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: Depends field of package python3-mshr: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmshr64-dev: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb'. dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2919999 and its subdirectories I: Current time: Sun Sep 14 11:07:47 -12 2025 I: pbuilder-time-stamp: 1757891267 Sun Sep 14 23:07:47 UTC 2025 I: Signing ./b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo as mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc Sun Sep 14 23:07:48 UTC 2025 I: Signed ./b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo as ./b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc Sun Sep 14 23:07:48 UTC 2025 - build #1 for mshr/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Sun Sep 14 23:07:48 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-3M5yiHy6, removing. /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO: total 20 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:07 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 22:43 b2 -rw-rw-r-- 1 jenkins jenkins 3128 Sep 13 06:56 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -rw------- 1 jenkins jenkins 4358 Sep 14 22:43 rbuildlog.kfuV3Co /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1: total 108700 -rw-r--r-- 1 jenkins jenkins 378860 Sep 14 23:07 build.log -rw-r--r-- 1 jenkins jenkins 15884 Sep 14 23:07 libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 636428 Sep 14 23:07 libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 40628 Sep 14 23:07 libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402136 Sep 14 23:07 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1843296 Sep 14 23:07 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402608 Sep 14 23:07 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1839716 Sep 14 23:07 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6220 Sep 14 23:07 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 14352 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 3128 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -rw-r--r-- 1 jenkins jenkins 21065 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 21947 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 7246 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 2277 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes -rw-r--r-- 1 jenkins jenkins 1689328 Sep 14 23:07 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122176 Sep 14 23:07 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1689316 Sep 14 23:07 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122664 Sep 14 23:07 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 9208 Sep 14 23:07 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2: total 0 Sun Sep 14 23:07:49 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 10:43:30 -12 2025 I: pbuilder-time-stamp: 1757889810 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc: no acceptable signature found dpkg-source: info: extracting mshr in mshr-2019.2.0~git20230811.ff54a68+dfsg1 dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_controls.diff dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying CGAL_6_compatibility.diff I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='399f18d421f447fe81d46860d3b82cdc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2919999' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_zmPA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1 --logfile b1/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev, libdolfin64-dev, python3-ffc, python3-numpy-dev, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on libmpfr-dev; however: Package libmpfr-dev is not installed. pbuilder-satisfydepends-dummy depends on libgmp-dev; however: Package libgmp-dev is not installed. pbuilder-satisfydepends-dummy depends on libcgal-dev (>= 6.0~); however: Package libcgal-dev is not installed. pbuilder-satisfydepends-dummy depends on libtet1.5-dev; however: Package libtet1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin-dev; however: Package libdolfin-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin64-dev; however: Package libdolfin64-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc; however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev; however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-64-real; however: Package python3-petsc4py-64-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-64-real; however: Package python3-slepc4py-64-real is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gcc-14-base{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libblas64-3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcgal-dev{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfin-dev{a} libdolfin-dev-common{a} libdolfin2019.2t64{a} libdolfin64-2019.2t64{a} libdolfin64-dev{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran-15-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libhypre64m-2.32.0{a} libhypre64m-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblapack64-3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmpfr-dev{a} libmumps-5.7{a} libmumps-64pord-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmumps64-dev{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenblas64-0{a} libopenblas64-0-pthread{a} libopenblas64-dev{a} libopenblas64-pthread-dev{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpetsc64-real3.22{a} libpetsc64-real3.22-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libslepc64-real3.22{a} libslepc64-real3.22-dev{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtet1.5{a} libtet1.5-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-dev{a} libz3-4{a} libze1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python-petsc4py-doc{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-dijitso{a} python3-ffc{a} python3-fiat{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-petsc4py{a} python3-petsc4py-64-real{a} python3-petsc4py-64-real3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-64-real{a} python3-slepc4py-64-real3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-sympy{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl-legacy{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} swig{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libjson-xs-perl libldap-common libmail-sendmail-perl libpetsc-complex-dev libpetsc-real-dev libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-pil python3-sphinx wget xauth zsh 0 packages upgraded, 369 newly installed, 0 to remove and 0 not upgraded. Need to get 429 MB of archives. After unpacking 2027 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.16.0-2 [78.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:10.0p1-8 [986 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.16.0-1 [437 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-1 [12.0 MB] Get: 69 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.2.0-4 [886 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-4 [78.8 MB] Get: 87 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.2.0-4 [17.9 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 89 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.11.0-2 [67.1 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.11.0-2 [211 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-22+b3 [23.6 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-6 [120 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libblas64-3 amd64 3.12.1-7 [205 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-5 [235 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-5 [236 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-5 [241 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-5 [247 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 129 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-5 [231 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-5 [239 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 134 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-5 [286 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-5 [231 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-5 [232 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-5 [302 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5 [265 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-5 [541 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-5 [590 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 147 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.2-1 [164 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.19.0+ds-1 [1336 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.12.2-1 [23.5 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.8-9 [3258 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-5 [276 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.8-9 [107 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.11.0-2 [110 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.11.0-2 [235 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 56.1-1 [654 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.19-1 [36.5 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-5 [416 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.5.4-5 [168 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.12.2-1 [257 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.8-9 [203 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.8-9 [1228 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 187 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-5 [296 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-5 [355 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-5 [385 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 193 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-5 [273 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-5 [280 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 197 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-5 [235 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-5 [237 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 200 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.41-12 [7341 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libmpfr-dev amd64 4.2.2-2 [283 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libcgal-dev amd64 6.0.1-1 [5115 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.11.0+dfsg-2 [703 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.16.0-1 [568 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.11.0+dfsg-2 [101 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-21 [223 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-4 [1518 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.7-1 [660 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5.1 [655 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-5 [1803 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.11.0+dfsg-2 [104 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 246 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.11.0+dfsg-2 [164 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [174 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.11.0+dfsg-2 [309 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.5+dfsg1-2+b2 [8958 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-6 [99.9 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1+b1 [1398 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2005 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-4 [125 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-4 [72.7 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-4 [47.7 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-4 [3433 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-4 [18.8 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.11.0+dfsg-2 [58.8 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.11.0+dfsg-2 [50.8 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.11.0+dfsg-2 [72.2 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.11.0+dfsg-2 [78.1 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.11.0+dfsg-2 [1598 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.7-1 [411 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.7-1 [1583 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.1.0-5 [797 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-5 [24.8 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-7 [70.2 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-ufl-legacy all 1:2022.3.0-3 [158 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-4 [232 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.7-1 [1380 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 289 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2025.07.22-1 [47.5 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2025.07.22-1 [51.0 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.3-1 [8812 B] Get: 296 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.1+dfsg1-2 [22.0 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5.1 [960 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.5+dfsg1-2 [310 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-5 [2096 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.24.0-3 [15.4 MB] Get: 311 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.24.0-3 [55.5 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7965 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-6 [112 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6381 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [53.2 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0-pthread amd64 0.3.30+ds-3 [7235 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 liblapack64-3 amd64 3.12.1-7 [2658 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libhypre64m-2.32.0 amd64 2.32.0-5 [1652 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libmumps-64pord-5.7 amd64 5.7.3-3+b1 [1963 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22 amd64 3.22.5+dfsg1-2+b2 [8868 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22 amd64 3.22.2+dfsg1-1+b1 [1394 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2001 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0 amd64 0.3.30+ds-3 [43.5 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libopenblas64-pthread-dev amd64 0.3.30+ds-3 [5359 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libopenblas64-dev amd64 0.3.30+ds-3 [43.5 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libhypre64m-dev amd64 2.32.0-5 [1924 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libmumps64-dev amd64 5.7.3-3+b1 [1861 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7961 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6426 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [45.8 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 338 http://deb.debian.org/debian unstable/main amd64 libtet1.5 amd64 1.5.0-5+b2 [239 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libtet1.5-dev amd64 1.5.0-5+b2 [29.9 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.13.6-2 [205 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.4-2 [778 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 347 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 358 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.3.0-1 [1503 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.4-2 [1267 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.4-2 [11.1 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real3.22 amd64 3.22.4-2 [1265 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real all 3.22.4-2 [10.9 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.4-2 [11.2 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.13.6-2 [215 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.2-1 [6636 B] Get: 367 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real all 3.22.2-1 [6608 B] Get: 369 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.2-1 [6828 B] Fetched 429 MB in 9s (50.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_amd64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:amd64 (3.13.7-1) ... Setting up libexpat1:amd64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20251 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../4-libffi8_3.5.2-2_amd64.deb ... Unpacking libffi8:amd64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../6-libreadline8t64_8.3-3_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_amd64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21266 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:amd64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../002-libblas3_3.12.1-7_amd64.deb ... Unpacking libblas3:amd64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../003-libgfortran5_15.2.0-4_amd64.deb ... Unpacking libgfortran5:amd64 (15.2.0-4) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../004-liblapack3_3.12.1-7_amd64.deb ... Unpacking liblapack3:amd64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_amd64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../006-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... 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Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up libfftw3-single3:amd64 (3.3.10-2+b1) ... Setting up swig (4.3.0-1) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libboost-date-time1.83.0:amd64 (1.83.0-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libboost-timer1.83.0:amd64 (1.83.0-5) ... Setting up gcc-14-base:amd64 (14.3.0-8) ... Setting up libcbor0.10:amd64 (0.10.2-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:amd64 (0.2.5-2) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libscotch-7.0:amd64 (7.0.7-1) ... Setting up libboost-regex1.83.0:amd64 (1.83.0-5) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libedit2:amd64 (3.1-20250104-1) ... Setting up libboost-system1.83.0:amd64 (1.83.0-5) ... Setting up libuv1t64:amd64 (1.51.0-2) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ... Setting up libibumad3:amd64 (56.1-1) ... Setting up libboost-thread1.83.0:amd64 (1.83.0-5) ... Setting up libfftw3-long3:amd64 (3.3.10-2+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libmetis5:amd64 (5.1.0.dfsg-7+b2) ... Setting up libibmad5:amd64 (56.1-1) ... Setting up libcom-err2:amd64 (1.47.2-3+b3) ... Setting up libldl3:amd64 (1:7.11.0+dfsg-2) ... Setting up file (1:5.46-5) ... Setting up libboost-filesystem1.83.0:amd64 (1.83.0-5) ... Setting up libdolfin-dev-common (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libaec0:amd64 (1.1.4-2) ... Setting up libze1:amd64 (1.24.1-2) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libc6-dbg:amd64 (2.41-12) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Sep 14 22:48:48 UTC 2025. Universal Time is now: Sun Sep 14 22:48:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-5) ... Setting up libboost-serialization1.83.0:amd64 (1.83.0-5) ... Setting up libbtf2:amd64 (1:7.11.0+dfsg-2) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libz3-4:amd64 (4.13.3-1) ... Setting up libblas3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libunbound8:amd64 (1.23.1-1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-5) ... Setting up libexpat1-dev:amd64 (2.7.1-2) ... Setting up libjpeg62-turbo:amd64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjpeg62-turbo-dev:amd64 (1:2.1.5-4) ... Setting up libboost-chrono1.83.0t64:amd64 (1.83.0-5) ... Setting up libjsoncpp26:amd64 (1.9.6-4) ... Setting up libfftw3-quad3:amd64 (3.3.10-2+b1) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libssl-dev:amd64 (3.5.2-1) ... Setting up libhwloc15:amd64 (2.12.2-1) ... Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1.2) ... Setting up autopoint (0.23.1-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libltdl7:amd64 (2.5.4-5) ... Setting up opencl-c-headers (3.0~2025.07.22-1) ... Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libgfortran5:amd64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:amd64 (1.11.0-1) ... Setting up libnghttp3-dev:amd64 (1.11.0-1) ... Setting up libmumps-headers-dev (5.7.3-3) ... Setting up liblzma-dev:amd64 (5.8.1-1.1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:amd64 (3.5.2-2) ... Setting up libnuma1:amd64 (2.0.19-1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... Setting up libtet1.5:amd64 (1.5.0-5+b2) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libjson-perl (4.10000-1) ... Setting up libnl-3-200:amd64 (3.11.0-2) ... Setting up libpsm2-2 (11.2.185-2.1) ... Setting up openmpi-common (5.0.8-9) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libsuitesparseconfig7:amd64 (1:7.11.0+dfsg-2) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.5) ... Setting up libtet1.5-dev:amd64 (1.5.0-5+b2) ... Setting up cmake-data (4.1.1+really3.31.6-1) ... Setting up librhash1:amd64 (1.4.6-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libboost-math1.83.0:amd64 (1.83.0-5) ... Setting up libjs-jquery (3.7.1+dfsg+~3.5.33-1) ... Setting up libgcc-14-dev:amd64 (14.3.0-8) ... Setting up libfido2-1:amd64 (1.16.0-2) ... Setting up valgrind (1:3.24.0-3) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libstdc++-14-dev:amd64 (14.3.0-8) ... Setting up libdrm-common (2.4.125-2) ... Setting up valgrind-mpi (1:3.24.0-3) ... Setting up libarchive13t64:amd64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.4-2) ... Setting up libblas64-3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost1.83-dev:amd64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-5) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-5) ... Setting up libtool (2.5.4-5) ... Setting up libcolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libspex3:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.11.0+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libopenblas64-0-pthread:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-5) ... Setting up libaec-dev:amd64 (1.1.4-2) ... Setting up libcxsparse4:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-5) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libopenblas64-pthread-dev:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode Setting up liblapack64-3:amd64 (3.12.1-7) ... Setting up libgfortran-15-dev:amd64 (15.2.0-4) ... Setting up libmpfr-dev:amd64 (4.2.2-2) ... Setting up libcamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.19-1) ... Setting up libnl-route-3-200:amd64 (3.11.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (21) ... Setting up libltdl-dev:amd64 (2.5.4-5) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-5) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b3) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up librbio4:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-5) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up sphinx-common (8.2.3-6) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2025.07.22-1) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.3-1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-5) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libopenblas64-0:amd64 (0.3.30+ds-3) ... Setting up libdrm2:amd64 (2.4.125-2) ... Setting up libnl-3-dev:amd64 (3.11.0-2) ... Setting up groff-base (1.23.0-9) ... Setting up libhwloc-dev:amd64 (2.12.2-1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-5) ... Setting up libsuperlu-dev:amd64 (7.0.1+dfsg1-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.125-2) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-5) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-2) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-4) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-6) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libopenblas64-dev:amd64 (0.3.30+ds-3) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libspqr4:amd64 (1:7.11.0+dfsg-2) ... Setting up python3.13 (3.13.7-1) ... Setting up openssh-client (1:10.0p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up python3 (3.13.7-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-5) ... Setting up python3-zipp (3.23.0-1) ... Setting up python-petsc4py-doc (3.22.4-2) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.11.0-2) ... Setting up libgnutls-dane0t64:amd64 (3.8.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libklu2:amd64 (1:7.11.0+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Setting up python3-ufl-legacy (1:2022.3.0-3) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up gfortran-15 (15.2.0-4) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:amd64 (3.8.10-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-fiat (2019.2.0~git20210419.7d418fa-7) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.16.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up python3.13-dev (3.13.7-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libibverbs-dev:amd64 (56.1-1) ... Setting up libparu1:amd64 (1:7.11.0+dfsg-2) ... Setting up pybind11-dev (2.13.6-2) ... Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcgal-dev:amd64 (6.0.1-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up python3-pybind11 (2.13.6-2) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libsuitesparse-dev:amd64 (1:7.11.0+dfsg-2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libcurl4-openssl-dev:amd64 (8.16.0-1) ... Setting up libucx0:amd64 (1.19.0+ds-1) ... Setting up libopenmpi40:amd64 (5.0.8-9) ... Setting up libptscotch-7.0:amd64 (7.0.7-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libparpack2t64:amd64 (3.9.1-6) ... Setting up libboost-mpi1.83.0 (1.83.0-5) ... Setting up openmpi-bin (5.0.8-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5.1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-5) ... Setting up python3-mpi4py (4.1.0-5) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5.1) ... Setting up libopenmpi-dev:amd64 (5.0.8-9) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre64m-2.32.0:amd64 (2.32.0-5) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-5) ... Setting up python3-ffc (2019.2.0~legacy20230509.35df986-4) ... Setting up libmumps-64pord-5.7:amd64 (5.7.3-3+b1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libpetsc64-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.22 (libpetsc64.so.3.22) in auto mode Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libhypre64m-dev:amd64 (2.32.0-5) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libslepc64-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.22 (libslepc64.so.3.22) in auto mode Setting up libmumps64-dev:amd64 (5.7.3-3+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.7-1) ... Setting up libparpack2-dev:amd64 (3.9.1-6) ... Setting up libpetsc-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-5) ... Setting up libptscotch-dev (7.0.7-1) ... Setting up python3-petsc4py-real3.22 (3.22.4-2) ... Setting up python3-petsc4py-64-real3.22 (3.22.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-5) ... Setting up python3-petsc4py-64-real (3.22.4-2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-4) ... Setting up libpetsc3.22-dev-common (3.22.5+dfsg1-2) ... Setting up python3-petsc4py (3.22.4-2) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-real (3.22.4-2) ... Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up python3-slepc4py-64-real3.22 (3.22.2-1+b1) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up python3-slepc4py-real3.22 (3.22.2-1+b1) ... Setting up libpetsc64-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.22 (petsc64-3.22) in auto mode Setting up python3-slepc4py (3.22.2-1) ... Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up python3-slepc4py-real (3.22.2-1) ... Setting up python3-slepc4py-64-real (3.22.2-1) ... Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libslepc64-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.22 (slepc64-3.22) in auto mode Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake \ --with python3 \ --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean rm -rf python/build* rm -rf python/mshr.egg-info rm -rf debian/tmp64 rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake \ --with python3 \ --no-parallel dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (3.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64" cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (1.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr.so.2019.2 -o libmshr.so.2019.2.0.dev0 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directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshrable.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu-64 cd obj-x86_64-linux-gnu-64 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshr.dir/build.make 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'/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr64.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr64.so.2019.2 -o libmshr64.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/bin/cmake -E cmake_symlink_library libmshr64.so.2019.2.0.dev0 libmshr64.so.2019.2 libmshr64.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 90%] Built target mshr make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles/mshrable.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_auto_test -O--buildsystem=cmake -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--no-parallel dh_prep -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=obj-x86_64-linux-gnu --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64 cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' set -e; \ for v in python3.13; do \ cd python; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp --install-layout=deb; \ PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64 --install-layout=deb; \ cd ..; \ done CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Configuring done (2.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Configuring done (0.6s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64 running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. Can't stat debian/libmshr2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev-common: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI Can't stat debian/python3-mshr-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI Can't stat debian/libmshr64-2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr64-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI Can't stat debian/python3-mshr64-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_install -O--buildsystem=cmake -O--no-parallel dh_installdocs -O--buildsystem=cmake -O--no-parallel dh_installchangelogs -O--buildsystem=cmake -O--no-parallel dh_installexamples -O--buildsystem=cmake -O--no-parallel dh_installman -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a dh_numpy3 -a Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI mkdir -p debian/python3-mshr-real//usr/lib/mshr mv debian/python3-mshr-real/usr/lib/python3 debian/python3-mshr-real//usr/lib/mshr mkdir -p debian/python3-mshr64-real//usr/lib/mshr64 mv debian/python3-mshr64-real/usr/lib/python3 debian/python3-mshr64-real//usr/lib/mshr64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_python3 -O--buildsystem=cmake -O--no-parallel -Nlibmshr2019.2 -Nlibmshr-dev -Nlibmshr-dev-common -Npython3-mshr-real -Nlibmshr64-2019.2 -Nlibmshr64-dev -Npython3-mshr64-real dh_installsystemduser -O--buildsystem=cmake -O--no-parallel dh_perl -O--buildsystem=cmake -O--no-parallel dh_link -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel dh_compress -O--buildsystem=cmake -O--no-parallel dh_fixperms -O--buildsystem=cmake -O--no-parallel dh_missing -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off for amd64";; \ *) dh_dwz;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) dh_strip --no-automatic-dbgsym;; \ *) dh_strip;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_makeshlibs -a -O--buildsystem=cmake -O--no-parallel dh_shlibdeps -a -O--buildsystem=cmake -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \ -Vpybind11:Upstream-Version=2.13 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: Depends field of package python3-mshr: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmshr64-dev: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb'. dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2919999 and its subdirectories I: Current time: Sun Sep 14 11:07:47 -12 2025 I: pbuilder-time-stamp: 1757891267 Sun Sep 14 23:07:49 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom02-amd64.debian.net. Sun Sep 14 23:07:49 UTC 2025 I: Preparing to do remote build '2' on infom02-amd64.debian.net. Sun Sep 14 23:07:49 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Sun Sep 14 23:07:49 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-wxMIZ6' ==================================================================================== Sun Oct 18 05:30:50 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "2 mshr unstable /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO 2019.2.0~git20230811.ff54a68+dfsg1-5" as arguments. Sun Oct 18 05:30:50 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-32vSghba" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 05:30:50 UTC 2026 I: Downloading source for unstable/mshr=2019.2.0~git20230811.ff54a68+dfsg1-5 Reading package lists... NOTICE: 'mshr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/mshr.git Please use: git clone https://salsa.debian.org/science-team/fenics/mshr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (dsc) [3128 B] Get:2 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (tar) [122 kB] Get:3 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (diff) [14.4 kB] Fetched 140 kB in 0s (1725 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mshr' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/fenics/mshr.git Please use: git clone https://salsa.debian.org/science-team/fenics/mshr.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 140 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (dsc) [3128 B] Get:2 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (tar) [122 kB] Get:3 http://deb.debian.org/debian unstable/main mshr 2019.2.0~git20230811.ff54a68+dfsg1-5 (diff) [14.4 kB] Fetched 140 kB in 0s (1725 kB/s) Download complete and in download only mode ============================================================================= Re-Building mshr in unstable on amd64 on infom02-amd64 now. Date: Sun Oct 18 05:30:51 UTC 2026 Date UTC: Sun Oct 18 05:30:51 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_Chqj + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' mshr = debian-installer -o mshr = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' mshr = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_Chqj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2 --logfile b2/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 18 19:30:51 +14 2026 I: pbuilder-time-stamp: 1792301451 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz] I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc: no acceptable signature found dpkg-source: info: extracting mshr in mshr-2019.2.0~git20230811.ff54a68+dfsg1 dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying test_controls.diff dpkg-source: info: applying lib_rename.patch dpkg-source: info: applying CGAL_6_compatibility.diff I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D01_modify_environment starting debug: Running on infom02-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 05:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=b4edef685f91448e9bfa992832cb6dc0 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1389757 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_Chqj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2 --logfile b2/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev, libdolfin64-dev, python3-ffc, python3-numpy-dev, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on libmpfr-dev; however: Package libmpfr-dev is not installed. pbuilder-satisfydepends-dummy depends on libgmp-dev; however: Package libgmp-dev is not installed. pbuilder-satisfydepends-dummy depends on libcgal-dev (>= 6.0~); however: Package libcgal-dev is not installed. pbuilder-satisfydepends-dummy depends on libtet1.5-dev; however: Package libtet1.5-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin-dev; however: Package libdolfin-dev is not installed. pbuilder-satisfydepends-dummy depends on libdolfin64-dev; however: Package libdolfin64-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-ffc; however: Package python3-ffc is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy-dev; however: Package python3-numpy-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py; however: Package python3-petsc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py; however: Package python3-slepc4py is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however: Package python3-petsc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however: Package python3-slepc4py-real is not installed. pbuilder-satisfydepends-dummy depends on python3-petsc4py-64-real; however: Package python3-petsc4py-64-real is not installed. pbuilder-satisfydepends-dummy depends on python3-slepc4py-64-real; however: Package python3-slepc4py-64-real is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-mathjax{a} gcc-14-base{a} gettext{a} gettext-base{a} gfortran{a} gfortran-15{a} gfortran-15-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libblas64-3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcgal-dev{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfin-dev{a} libdolfin-dev-common{a} libdolfin2019.2t64{a} libdolfin64-2019.2t64{a} libdolfin64-dev{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgfortran-15-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libhypre64m-2.32.0{a} libhypre64m-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu76{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblapack64-3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmpfr-dev{a} libmumps-5.7{a} libmumps-64pord-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmumps64-dev{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenblas64-0{a} libopenblas64-0-pthread{a} libopenblas64-dev{a} libopenblas64-pthread-dev{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpetsc64-real3.22{a} libpetsc64-real3.22-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libslepc64-real3.22{a} libslepc64-real3.22-dev{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libstdc++-14-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtet1.5{a} libtet1.5-dev{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2-16{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-dev{a} libz3-4{a} libze1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python-petsc4py-doc{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-dijitso{a} python3-ffc{a} python3-fiat{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-petsc4py{a} python3-petsc4py-64-real{a} python3-petsc4py-64-real3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-64-real{a} python3-slepc4py-64-real3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-sympy{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl-legacy{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} swig{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libjson-xs-perl libldap-common libmail-sendmail-perl libpetsc-complex-dev libpetsc-real-dev libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-pil python3-sphinx wget xauth zsh 0 packages upgraded, 369 newly installed, 0 to remove and 0 not upgraded. Need to get 429 MB of archives. After unpacking 2027 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.7-1 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.7-1 [2216 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.7-1 [1960 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.7-1 [761 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1.2 [142 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-7 [215 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 15.2.0-4 [862 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-7 [2785 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1.2 [5224 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.16.0-2 [78.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:10.0p1-8 [986 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.11.0-1 [73.7 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.10-2 [1484 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.16.0-1 [437 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 66 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-1 [12.0 MB] Get: 69 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b3 [56.7 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 76 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 gcc-14-base amd64 14.3.0-8 [52.1 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libgfortran-15-dev amd64 15.2.0-4 [886 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 gfortran-15-x86-64-linux-gnu amd64 15.2.0-4 [78.8 MB] Get: 87 http://deb.debian.org/debian unstable/main amd64 gfortran-15 amd64 15.2.0-4 [17.9 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:15.2.0-4 [1276 B] Get: 89 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:15.2.0-4 [1436 B] Get: 90 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.11.0-2 [67.1 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.11.0-2 [211 kB] Get: 92 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 56.1-1 [62.4 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 56.1-1 [357 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 76.1-4 [215 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.4-2 [23.8 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.4-2 [8108 B] Get: 103 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.4-2 [21.5 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-22+b3 [23.6 MB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.11.0+dfsg-2 [33.4 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.11.0+dfsg-2 [51.0 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.125-2 [8576 B] Get: 110 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.125-2 [39.1 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.125-2 [23.2 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.19-1 [22.2 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.2.4+ds-1 [61.1 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-3 [535 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-6 [8924 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-6 [104 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.1-7 [229 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.1-7 [5894 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-6 [120 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libblas64-3 amd64 3.12.1-7 [205 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libgcc-14-dev amd64 14.3.0-8 [2670 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.3.0-8 [2673 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-5 [10.6 MB] Get: 124 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-5 [235 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-5 [236 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-5 [241 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-5 [247 kB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B] Get: 129 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-5 [231 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-5 [343 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-5 [383 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-5 [239 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B] Get: 134 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-5 [286 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-5 [231 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-5 [232 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-5 [302 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B] Get: 139 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-5 [336 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 76.1-4 [10.8 MB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-5 [352 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-5 [265 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B] Get: 144 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-5 [541 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-5 [590 kB] Get: 146 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B] Get: 147 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 56.1-1 [70.4 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 2.1.0-1.1 [706 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.2-1 [164 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 56.1-1 [30.0 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 56.1-1 [44.5 kB] Get: 155 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.19.0+ds-1 [1336 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB] Get: 157 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 163 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b2 [14.2 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 libze1 amd64 1.24.1-2 [514 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [42.9 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.12.2-1 [23.5 kB] Get: 167 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.8-9 [3258 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-5 [276 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.8-9 [107 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.11.0-2 [110 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.11.0-2 [235 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 56.1-1 [654 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.19-1 [36.5 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-5 [416 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.5.4-5 [168 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.12.2-1 [257 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB] Get: 181 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.7.1+dfsg+~3.5.33-1 [319 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.8-9 [203 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.8-9 [1228 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.18 [3372 B] Get: 187 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-5 [296 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B] Get: 189 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-5 [355 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-5 [385 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B] Get: 193 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B] Get: 194 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-5 [273 kB] Get: 195 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-5 [280 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B] Get: 197 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-5 [235 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-5 [237 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B] Get: 200 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.41-12 [7341 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.11.0+dfsg-2 [47.8 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.11.0+dfsg-2 [49.7 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-5 [330 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-5 [658 kB] Get: 207 http://deb.debian.org/debian unstable/main amd64 libmpfr-dev amd64 4.2.2-2 [283 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 libcgal-dev amd64 6.0.1-1 [5115 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.11.0+dfsg-2 [42.4 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.11.0+dfsg-2 [703 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-4 [103 kB] Get: 213 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1+b1 [117 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 libnghttp3-dev amd64 1.11.0-1 [101 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.23.1-1 [606 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.10-2 [458 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.10-2 [458 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get: 227 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.10-2 [1423 kB] Get: 228 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-3 [67.9 kB] Get: 229 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.5.2-1 [2957 kB] Get: 230 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get: 231 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1.1 [389 kB] Get: 232 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.16.0-1 [568 kB] Get: 233 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.11.0+dfsg-2 [101 kB] Get: 234 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-21 [223 kB] Get: 235 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-4 [1518 kB] Get: 236 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB] Get: 237 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB] Get: 238 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB] Get: 239 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB] Get: 240 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB] Get: 241 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.7-1 [660 kB] Get: 242 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5.1 [655 kB] Get: 243 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-5 [1803 kB] Get: 244 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.11.0+dfsg-2 [104 kB] Get: 245 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.18 [2576 B] Get: 246 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB] Get: 247 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB] Get: 248 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.11.0+dfsg-2 [164 kB] Get: 249 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.1+dfsg1-2 [174 kB] Get: 250 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.11.0+dfsg-2 [309 kB] Get: 251 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB] Get: 252 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.5+dfsg1-2+b2 [8958 kB] Get: 253 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-6 [99.9 kB] Get: 254 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1+b1 [1398 kB] Get: 255 http://deb.debian.org/debian unstable/main amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2005 kB] Get: 256 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB] Get: 257 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-5 [1034 kB] Get: 258 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-4 [125 kB] Get: 259 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-4 [72.7 kB] Get: 260 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-4 [47.7 kB] Get: 261 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-4 [146 kB] Get: 262 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-4 [24.9 kB] Get: 263 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-4 [168 kB] Get: 264 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-4 [292 kB] Get: 265 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-4 [72.2 kB] Get: 266 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-4 [3433 kB] Get: 267 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-4 [18.8 kB] Get: 268 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.11.0+dfsg-2 [34.3 kB] Get: 269 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.11.0+dfsg-2 [58.8 kB] Get: 270 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.11.0+dfsg-2 [50.8 kB] Get: 271 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.11.0+dfsg-2 [72.2 kB] Get: 272 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.11.0+dfsg-2 [78.1 kB] Get: 273 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.11.0+dfsg-2 [1598 kB] Get: 274 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.7-1 [411 kB] Get: 275 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.7-1 [1583 kB] Get: 276 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1.1 [357 kB] Get: 277 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.14.5+dfsg-0.2 [744 kB] Get: 278 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.1.0-5 [797 kB] Get: 279 http://deb.debian.org/debian unstable/main amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-5 [24.8 kB] Get: 280 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 281 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.14.0-2 [4228 kB] Get: 282 http://deb.debian.org/debian unstable/main amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-7 [70.2 kB] Get: 283 http://deb.debian.org/debian unstable/main amd64 python3-ufl-legacy all 1:2022.3.0-3 [158 kB] Get: 284 http://deb.debian.org/debian unstable/main amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-4 [232 kB] Get: 285 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 286 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.7-1 [1380 kB] Get: 287 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB] Get: 288 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B] Get: 289 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB] Get: 290 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB] Get: 291 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB] Get: 292 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB] Get: 293 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2025.07.22-1 [47.5 kB] Get: 294 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2025.07.22-1 [51.0 kB] Get: 295 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.3-1 [8812 B] Get: 296 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.1+dfsg1-2 [22.0 kB] Get: 297 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5.1 [960 kB] Get: 298 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get: 299 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get: 300 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get: 301 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get: 302 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get: 303 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get: 304 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get: 305 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB] Get: 306 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.5+dfsg1-2 [310 kB] Get: 307 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-5 [2096 kB] Get: 308 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB] Get: 309 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB] Get: 310 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.24.0-3 [15.4 MB] Get: 311 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.24.0-3 [55.5 kB] Get: 312 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7965 kB] Get: 313 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-6 [112 kB] Get: 314 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6381 kB] Get: 315 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [53.2 kB] Get: 316 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0-pthread amd64 0.3.30+ds-3 [7235 kB] Get: 317 http://deb.debian.org/debian unstable/main amd64 liblapack64-3 amd64 3.12.1-7 [2658 kB] Get: 318 http://deb.debian.org/debian unstable/main amd64 libhypre64m-2.32.0 amd64 2.32.0-5 [1652 kB] Get: 319 http://deb.debian.org/debian unstable/main amd64 libmumps-64pord-5.7 amd64 5.7.3-3+b1 [1963 kB] Get: 320 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22 amd64 3.22.5+dfsg1-2+b2 [8868 kB] Get: 321 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22 amd64 3.22.2+dfsg1-1+b1 [1394 kB] Get: 322 http://deb.debian.org/debian unstable/main amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-21 [2001 kB] Get: 323 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0 amd64 0.3.30+ds-3 [43.5 kB] Get: 324 http://deb.debian.org/debian unstable/main amd64 libopenblas64-pthread-dev amd64 0.3.30+ds-3 [5359 kB] Get: 325 http://deb.debian.org/debian unstable/main amd64 libopenblas64-dev amd64 0.3.30+ds-3 [43.5 kB] Get: 326 http://deb.debian.org/debian unstable/main amd64 libhypre64m-dev amd64 2.32.0-5 [1924 kB] Get: 327 http://deb.debian.org/debian unstable/main amd64 libmumps64-dev amd64 5.7.3-3+b1 [1861 kB] Get: 328 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22-dev amd64 3.22.5+dfsg1-2+b2 [7961 kB] Get: 329 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [6426 kB] Get: 330 http://deb.debian.org/debian unstable/main amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-21 [45.8 kB] Get: 331 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-2 [161 kB] Get: 332 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 333 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB] Get: 334 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.7-1 [2162 kB] Get: 335 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.7-1 [5279 kB] Get: 336 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.7-1 [10.5 kB] Get: 337 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.7-1 [1068 B] Get: 338 http://deb.debian.org/debian unstable/main amd64 libtet1.5 amd64 1.5.0-5+b2 [239 kB] Get: 339 http://deb.debian.org/debian unstable/main amd64 libtet1.5-dev amd64 1.5.0-5+b2 [29.9 kB] Get: 340 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.13.6-2 [205 kB] Get: 341 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 342 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.4-2 [778 kB] Get: 343 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.7-1 [1048 B] Get: 344 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.7-1 [504 kB] Get: 345 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.7-1 [26.1 kB] Get: 346 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.7-1 [1068 B] Get: 347 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 348 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 349 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 350 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 351 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 352 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 353 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 354 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 355 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 356 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 357 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 358 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.3.0-1 [1503 kB] Get: 359 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.4-2 [1267 kB] Get: 360 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.4-2 [11.1 kB] Get: 361 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real3.22 amd64 3.22.4-2 [1265 kB] Get: 362 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real all 3.22.4-2 [10.9 kB] Get: 363 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.4-2 [11.2 kB] Get: 364 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.13.6-2 [215 kB] Get: 365 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 366 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.2-1 [6636 B] Get: 367 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real all 3.22.2-1 [6608 B] Get: 369 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.2-1 [6828 B] Fetched 429 MB in 8s (53.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.7-1) ... 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Setting up libblas-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libsz2:amd64 (1.1.4-2) ... Setting up libblas64-3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up liblapack3:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libboost1.83-dev:amd64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libarpack2t64:amd64 (3.9.1-6) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-5) ... Setting up libamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up libboost-chrono1.83-dev:amd64 (1.83.0-5) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libyaml-dev:amd64 (0.2.5-2) ... Setting up libboost-math1.83-dev:amd64 (1.83.0-5) ... Setting up libtool (2.5.4-5) ... Setting up libcolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libspex3:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ... Setting up libfftw3-bin (3.3.10-2+b1) ... Setting up libsuitesparse-mongoose3:amd64 (1:7.11.0+dfsg-2) ... Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ... Setting up libopenblas64-0-pthread:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-5) ... Setting up libaec-dev:amd64 (1.1.4-2) ... Setting up libcxsparse4:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-serialization1.83-dev:amd64 (1.83.0-5) ... Setting up libjpeg-dev:amd64 (1:2.1.5-4) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-4) ... Setting up libopenblas64-pthread-dev:amd64 (0.3.30+ds-3) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode Setting up liblapack64-3:amd64 (3.12.1-7) ... Setting up libgfortran-15-dev:amd64 (15.2.0-4) ... Setting up libmpfr-dev:amd64 (4.2.2-2) ... Setting up libcamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libsuperlu7:amd64 (7.0.1+dfsg1-2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libnuma-dev:amd64 (2.0.19-1) ... Setting up libnl-route-3-200:amd64 (3.11.0-2) ... Setting up libxnvctrl0:amd64 (535.171.04-1+b2) ... Setting up dh-autoreconf (21) ... Setting up libltdl-dev:amd64 (2.5.4-5) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libxml2-dev:amd64 (2.14.5+dfsg-0.2) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libboost-timer1.83-dev:amd64 (1.83.0-5) ... Setting up libllvm17t64:amd64 (1:17.0.6-22+b3) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up librbio4:amd64 (1:7.11.0+dfsg-2) ... Setting up libboost-date-time1.83-dev:amd64 (1.83.0-5) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up sphinx-common (8.2.3-6) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up opencl-clhpp-headers (3.0~2025.07.22-1) ... Setting up liblapack-dev:amd64 (3.12.1-7) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libeigen3-dev (3.4.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up icu-devtools (76.1-4) ... Setting up pkg-config:amd64 (1.8.1-4) ... Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libidn2-dev:amd64 (2.3.8-4) ... Setting up ocl-icd-opencl-dev:amd64 (2.3.3-1) ... Setting up libboost-atomic1.83-dev:amd64 (1.83.0-5) ... Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libccolamd3:amd64 (1:7.11.0+dfsg-2) ... Setting up libreadline8t64:amd64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up libopenblas64-0:amd64 (0.3.30+ds-3) ... Setting up libdrm2:amd64 (2.4.125-2) ... Setting up libnl-3-dev:amd64 (3.11.0-2) ... Setting up groff-base (1.23.0-9) ... Setting up libhwloc-dev:amd64 (2.12.2-1) ... Setting up libboost-dev:amd64 (1.83.0.2+b2) ... Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-5) ... Setting up libsuperlu-dev:amd64 (7.0.1+dfsg1-2) ... Setting up libpython3.13-stdlib:amd64 (3.13.7-1) ... Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ... Setting up libicu-dev:amd64 (76.1-4) ... Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libpython3-stdlib:amd64 (3.13.7-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.125-2) ... Setting up libpython3.13:amd64 (3.13.7-1) ... Setting up libgnutls30t64:amd64 (3.8.10-2) ... Setting up libboost-thread1.83-dev:amd64 (1.83.0-5) ... Setting up libgnutls-openssl27t64:amd64 (3.8.10-2) ... Setting up gfortran-15-x86-64-linux-gnu (15.2.0-4) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1+b1) ... Setting up libibverbs1:amd64 (56.1-1) ... Setting up libcholmod5:amd64 (1:7.11.0+dfsg-2) ... Setting up libarpack2-dev:amd64 (3.9.1-6) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libopenblas64-dev:amd64 (0.3.30+ds-3) ... Setting up ibverbs-providers:amd64 (56.1-1) ... Setting up libspqr4:amd64 (1:7.11.0+dfsg-2) ... Setting up python3.13 (3.13.7-1) ... Setting up openssh-client (1:10.0p1-8) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up python3 (3.13.7-1) ... /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l' axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence') /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d' print("\documentclass{article}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c' print("\centering") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m' print(" & & \multicolumn{4}{c}{--------------- Percent of -------------} & \\\\") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h' print("\hline") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e' print("\end{tabular}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e' print("\end{table}") /usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e' print("\end{document}") Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-5) ... Setting up python3-zipp (3.23.0-1) ... Setting up python-petsc4py-doc (3.22.4-2) ... Setting up python3-autocommand (2.2.2-3) ... Setting up libhwloc-plugins:amd64 (2.12.2-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran-x86-64-linux-gnu (4:15.2.0-4) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libnl-route-3-dev:amd64 (3.11.0-2) ... Setting up libgnutls-dane0t64:amd64 (3.8.10-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libklu2:amd64 (1:7.11.0+dfsg-2) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up libpython3.13-dev:amd64 (3.13.7-1) ... Setting up libevent-dev (2.1.12-stable-10+b1) ... Setting up libboost-regex1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up libumfpack6:amd64 (1:7.11.0+dfsg-2) ... Setting up python3-ufl-legacy (1:2022.3.0-3) ... Setting up librdmacm1t64:amd64 (56.1-1) ... Setting up python3-mpmath (1.3.0-1) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ... Setting up libhsakmt1:amd64 (6.2.4+ds-1) ... Setting up gfortran-15 (15.2.0-4) ... Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up dh-python (6.20250414) ... Setting up libgnutls28-dev:amd64 (3.8.10-2) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libfabric1:amd64 (2.1.0-1.1) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-fiat (2019.2.0~git20210419.7d418fa-7) ... Setting up libpython3-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up libcurl4t64:amd64 (8.16.0-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up python3.13-dev (3.13.7-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-5) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ... Setting up libibverbs-dev:amd64 (56.1-1) ... Setting up libparu1:amd64 (1:7.11.0+dfsg-2) ... Setting up pybind11-dev (2.13.6-2) ... Setting up gfortran (4:15.2.0-4) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcgal-dev:amd64 (6.0.1-1) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:amd64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libhsa-runtime64-1:amd64 (6.1.2-3) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up cmake (4.1.1+really3.31.6-1) ... Setting up python3-pybind11 (2.13.6-2) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up libsuitesparse-dev:amd64 (1:7.11.0+dfsg-2) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libamdhip64-5:amd64 (5.7.1-6) ... Setting up libcurl4-openssl-dev:amd64 (8.16.0-1) ... Setting up libucx0:amd64 (1.19.0+ds-1) ... Setting up libopenmpi40:amd64 (5.0.8-9) ... Setting up libptscotch-7.0:amd64 (7.0.7-1) ... Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ... Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ... Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libparpack2t64:amd64 (3.9.1-6) ... Setting up libboost-mpi1.83.0 (1.83.0-5) ... Setting up openmpi-bin (5.0.8-9) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-4) ... Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5.1) ... Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-4) ... Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ... Setting up mpi-default-bin (1.18) ... Setting up libhypre-2.32.0:amd64 (2.32.0-5) ... Setting up python3-mpi4py (4.1.0-5) ... Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5.1) ... Setting up libopenmpi-dev:amd64 (5.0.8-9) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode Setting up libhdf5-openmpi-dev (1.14.5+repack-4) ... update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libhypre64m-2.32.0:amd64 (2.32.0-5) ... Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ... Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-5) ... Setting up python3-ffc (2019.2.0~legacy20230509.35df986-4) ... Setting up libmumps-64pord-5.7:amd64 (5.7.3-3+b1) ... Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ... Setting up libpetsc64-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.22 (libpetsc64.so.3.22) in auto mode Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ... Setting up mpi-default-dev (1.18) ... Setting up libhypre64m-dev:amd64 (2.32.0-5) ... Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ... Setting up libslepc64-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.22 (libslepc64.so.3.22) in auto mode Setting up libmumps64-dev:amd64 (5.7.3-3+b1) ... Setting up libmumps-dev:amd64 (5.7.3-3+b1) ... Setting up libscotch-dev (7.0.7-1) ... Setting up libparpack2-dev:amd64 (3.9.1-6) ... Setting up libpetsc-real3.22:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode Setting up libhypre-dev:amd64 (2.32.0-5) ... Setting up libptscotch-dev (7.0.7-1) ... Setting up python3-petsc4py-real3.22 (3.22.4-2) ... Setting up python3-petsc4py-64-real3.22 (3.22.4-2) ... Setting up libboost-mpi1.83-dev (1.83.0-5) ... Setting up python3-petsc4py-64-real (3.22.4-2) ... Setting up libboost-mpi-dev (1.83.0.2+b2) ... Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-4) ... Setting up libpetsc3.22-dev-common (3.22.5+dfsg1-2) ... Setting up python3-petsc4py (3.22.4-2) ... Setting up libslepc-real3.22 (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode Setting up python3-petsc4py-real (3.22.4-2) ... Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up python3-slepc4py-64-real3.22 (3.22.2-1+b1) ... Setting up libpetsc-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: error: no alternatives for petsc update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode Setting up python3-slepc4py-real3.22 (3.22.2-1+b1) ... Setting up libpetsc64-real3.22-dev:amd64 (3.22.5+dfsg1-2+b2) ... update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.5 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.22 (petsc64-3.22) in auto mode Setting up python3-slepc4py (3.22.2-1) ... Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: error: no alternatives for slepc update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode Setting up python3-slepc4py-real (3.22.2-1) ... Setting up python3-slepc4py-64-real (3.22.2-1) ... Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Setting up libslepc64-real3.22-dev (3.22.2+dfsg1-1+b1) ... update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.22 (slepc64-3.22) in auto mode Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-21) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Francesco Ballarin dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean py3versions: no X-Python3-Version in control file, using supported versions dh clean --buildsystem=cmake \ --with python3 \ --no-parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_clean rm -rf python/build* rm -rf python/mshr.egg-info rm -rf debian/tmp64 rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel dh_clean -O--buildsystem=cmake -O--no-parallel debian/rules binary py3versions: no X-Python3-Version in control file, using supported versions dh binary --buildsystem=cmake \ --with python3 \ --no-parallel dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel dh_autoreconf -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (2.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64" cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 .. CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Targeting Unix Makefiles -- Using /usr/bin/c++ compiler. -- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so -- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include) /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include) CMakeLists.txt:17 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72") -- Boost include dirs: /usr/include -- Boost libraries: -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Using gcc version 4 or later. Adding -frounding-math CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message): The package name passed to `find_package_handle_standard_args` (TETGEN) does not match the name of the calling package (TetGen). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) CMakeLists.txt:32 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so CMake Warning (dev) at CMakeLists.txt:59 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options -- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0") CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package): Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake --help-policy CMP0167" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:95 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for one of the modules 'craypetsc_real;petsc;PETSc' -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of PetscInt -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled -- Configuring done (2.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 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directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshrable.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make -f CMakeFiles/mshrable.dir/build.make CMakeFiles/mshrable.dir/build make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/lib/libslepc_real.so /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/lib/libpetsc_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu-64 cd obj-x86_64-linux-gnu-64 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make -f CMakeFiles/mshr.dir/build.make 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'/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp" [ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp" [ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp" In file included from /usr/include/CGAL/AABB_traits.h:19, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope: /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Please use `` instead. ' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ In file included from /usr/include/c++/15/bits/shared_ptr_atomic.h:33, from /usr/include/c++/15/memory:83, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGGeometry.h:24, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitive.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGPrimitives3D.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include/mshr/CSGCGALDomain3D.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:18: In member function 'std::__atomic_base<_IntTp>::__int_type std::__atomic_base<_IntTp>::fetch_add(__int_type, std::memory_order) [with _ITp = int]', inlined from 'void CGAL::Handle::incref() const' at /usr/include/CGAL/Handle.h:87:29, inlined from 'CGAL::Handle::Handle(const CGAL::Handle&)' at /usr/include/CGAL/Handle.h:55:13, inlined from 'CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >::Lazy(const CGAL::Lazy > >, CGAL::Point_3 > >, CGAL::Cartesian_converter >, CGAL::Simple_cartesian >, CGAL::NT_converter, CGAL::Interval_nt > > >&)' at /usr/include/CGAL/Lazy.h:1084:7, inlined from 'CGAL::Point_3::Point_3(const CGAL::Point_3&)' at /usr/include/CGAL/Point_3.h:30:7, inlined from 'P CGAL::Vertex_point::point() const [with P = CGAL::Point_3; H = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:48:28, inlined from 'int CGAL::Halffacet_geometry::compare_xy(const Point_2&, const Point_2&) const [with Point = CGAL::Point_3; Plane = CGAL::Plane_3; Handle = CGAL::internal::In_place_list_iterator >, std::allocator > > >]' at /usr/include/CGAL/Nef_3/SNC_FM_decorator.h:213:35, inlined from 'bool CGAL::stl_seg_overlay_traits::lt_pnts_xy::operator()(const CGAL::stl_seg_overlay_traits::Point_2&, const CGAL::stl_seg_overlay_traits::Point_2&) const [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:555:26, inlined from 'std::pair::rebind<_Val>::other>::pointer>::_Base_ptr, typename std::__rb_tree::_Node_traits<_Val, typename __gnu_cxx::__alloc_traits::rebind<_Val>::other>::pointer>::_Base_ptr> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_equal_pos(const key_type&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2771:32, inlined from 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_equal(_Arg&&) [with _Arg = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Val = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*>; _KeyOfValue = std::_Select1st, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_tree.h:2820:27, inlined from 'std::multimap<_Key, _Tp, _Compare, _Alloc>::iterator std::multimap<_Key, _Tp, _Compare, _Alloc>::insert(value_type&&) [with _Key = CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > >; _Tp = std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*; _Compare = CGAL::stl_seg_overlay_traits, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >, CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >, CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >::lt_pnts_xy; _Alloc = std::allocator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, std::pair, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >*> >]' at /usr/include/c++/15/bits/stl_multimap.h:576:36, inlined from 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]' at /usr/include/CGAL/Nef_2/Segment_overlay_traits.h:775:16: /usr/include/c++/15/bits/atomic_base.h:631:34: warning: 'unsigned int __atomic_fetch_add_4(volatile void*, unsigned int, int)' writing 4 bytes into a region of size 0 overflows the destination [-Wstringop-overflow=] 631 | { return __atomic_fetch_add(&_M_i, __i, int(__m)); } | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void CGAL::stl_seg_overlay_traits::initialize_structures() [with IT = std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > >; PMDEC = CGAL::Halffacet_output, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::internal::In_place_list_iterator >, std::allocator > > >, CGAL::internal::In_place_list_iterator > >, std::allocator > > > >, std::_List_iterator, CGAL::internal::In_place_list_iterator >, std::allocator > > > >, CGAL::Vertex_point, CGAL::internal::In_place_list_iterator >, std::allocator > > > > > > >; GEOM = CGAL::Halffacet_geometry, CGAL::Plane_3, CGAL::internal::In_place_list_iterator >, std::allocator > > > >]': cc1plus: note: destination object is likely at address zero [ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp" [ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp" In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations] 855 | typedef CGAL::No_intersection_tag Itag; | ^~~~ In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32: /usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here 49 | struct CGAL_DEPRECATED No_intersection_tag : | ^~~~~~~~~~~~~~~~~~~ [ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp" [ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp" [ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp" [ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp" [ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp" [ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp" [ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp" [ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp" [ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp" [ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp" [ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp" [ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp" [ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp" In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24, from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20, from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23, from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/make_surface_mesh.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher_generator.h:21, from /usr/include/CGAL/make_surface_mesh.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28, from /usr/include/CGAL/Surface_mesher_generator.h:23: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24, from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:24: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21, from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:26: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22, from /usr/include/CGAL/Surface_mesher_generator.h:27: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20, from /usr/include/CGAL/Surface_mesher_generator.h:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21, from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22, from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesher_generator.h:29: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21, from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20, from /usr/include/CGAL/make_surface_mesh.h:30: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22, from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Implicit_surface_3.h:20, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22, from /usr/include/CGAL/Implicit_surface_3.h:25: /usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp] 80 | # warning "A deprecated header has been included." | ^~~~~~~ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ /usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.' 81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE) | ^ [ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp" [ 90%] Linking CXX shared library libmshr64.so /usr/bin/cmake -E cmake_link_script CMakeFiles/mshr.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/mshr.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libmshr64.so.2019.2 -o libmshr64.so.2019.2.0.dev0 CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o CMakeFiles/mshr.dir/src/Meshes.cpp.o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet 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'/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [ 95%] Building CXX object CMakeFiles/mshrable.dir/app/mshrable.cpp.o /usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)': /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations] 128 | std::string extension = boost::filesystem::extension(vm["polyout"].as()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/filesystem.hpp:21, from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25: /usr/include/boost/filesystem/convenience.hpp:29:20: note: declared here 29 | inline std::string extension(const path& p) | ^~~~~~~~~ [100%] Linking CXX executable mshrable /usr/bin/cmake -E cmake_link_script CMakeFiles/mshrable.dir/link.txt --verbose=1 /usr/bin/c++ -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/mshrable.dir/link.d CMakeFiles/mshrable.dir/app/mshrable.cpp.o -o mshrable libmshr64.so.2019.2.0.dev0 /usr/lib/x86_64-linux-gnu/libdolfin64.so.2019.2.0.64.dev0 /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so /usr/lib/x86_64-linux-gnu/libboost_timer.so /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/lib/libslepc64_real.so /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/lib/libpetsc64_real.so /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so /usr/lib/x86_64-linux-gnu/libgmp.so /usr/lib/x86_64-linux-gnu/libmpfr.so -ltet /usr/lib/x86_64-linux-gnu/libboost_system.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so /usr/lib/x86_64-linux-gnu/libboost_program_options.so make[4]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' [100%] Built target mshrable make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64/CMakeFiles" 0 make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_auto_test -O--buildsystem=cmake -O--no-parallel create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake -O--no-parallel dh_prep -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_auto_install --builddir=obj-x86_64-linux-gnu --destdir=debian/tmp cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64 cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' /usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2 -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' set -e; \ for v in python3.13; do \ cd python; \ PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp --install-layout=deb; \ PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real \ CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \ $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64 --install-layout=deb; \ cd ..; \ done CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Configuring done (0.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info creating mshr.egg-info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt writing manifest file 'mshr.egg-info/SOURCES.txt' reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 15.2.0 -- The CXX compiler identification is GNU 15.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message): Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules are removed. Run "cmake --help-policy CMP0148" for policy details. Use the cmake_policy command to set the policy and suppress this warning, or preferably upgrade to using FindPython, either by calling it explicitly before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11. Call Stack (most recent call first): /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package) /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include) /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include) CMakeLists.txt:22 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.7", minimum required is "3.7") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Configuring done (0.8s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64 running build running build_py creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr running build_ext building 'mshr.cpp' extension creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17 x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info writing mshr.egg-info/PKG-INFO writing dependency_links to mshr.egg-info/dependency_links.txt writing requirements to mshr.egg-info/requires.txt writing top-level names to mshr.egg-info/top_level.txt reading manifest file 'mshr.egg-info/SOURCES.txt' writing manifest file 'mshr.egg-info/SOURCES.txt' Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info Skipping SOURCES.txt running install_scripts dh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. Can't stat debian/libmshr2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI Can't stat debian/libmshr-dev-common: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI Can't stat debian/python3-mshr-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI Can't stat debian/libmshr64-2019.2: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI Can't stat debian/libmshr64-dev: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI Can't stat debian/python3-mshr64-real: No such file or directory at /usr/bin/dh_numpy3 line 85. dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_install -O--buildsystem=cmake -O--no-parallel dh_installdocs -O--buildsystem=cmake -O--no-parallel dh_installchangelogs -O--buildsystem=cmake -O--no-parallel dh_installexamples -O--buildsystem=cmake -O--no-parallel dh_installman -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_python3-arch make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_python3 -a dh_numpy3 -a Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. dh_numpy3: warning: skipping binary package libmshr2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr-dev-common which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr-real which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-2019.2 which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package libmshr64-dev which does not depend on the NumPy C ABI dh_numpy3: warning: skipping binary package python3-mshr64-real which does not depend on the NumPy C ABI mkdir -p debian/python3-mshr-real//usr/lib/mshr mv debian/python3-mshr-real/usr/lib/python3 debian/python3-mshr-real//usr/lib/mshr mkdir -p debian/python3-mshr64-real//usr/lib/mshr64 mv debian/python3-mshr64-real/usr/lib/python3 debian/python3-mshr64-real//usr/lib/mshr64 make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_python3 -O--buildsystem=cmake -O--no-parallel -Nlibmshr2019.2 -Nlibmshr-dev -Nlibmshr-dev-common -Npython3-mshr-real -Nlibmshr64-2019.2 -Nlibmshr64-dev -Npython3-mshr64-real dh_installsystemduser -O--buildsystem=cmake -O--no-parallel dh_perl -O--buildsystem=cmake -O--no-parallel dh_link -O--buildsystem=cmake -O--no-parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel dh_compress -O--buildsystem=cmake -O--no-parallel dh_fixperms -O--buildsystem=cmake -O--no-parallel dh_missing -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_dwz make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off for amd64";; \ *) dh_dwz;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' debian/rules override_dh_strip make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \ *\ amd64\ *) dh_strip --no-automatic-dbgsym;; \ *) dh_strip;; \ esac make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_makeshlibs -a -O--buildsystem=cmake -O--no-parallel dh_shlibdeps -a -O--buildsystem=cmake -O--no-parallel dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged dh_installdeb -O--buildsystem=cmake -O--no-parallel debian/rules override_dh_gencontrol make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' py3versions: no X-Python3-Version in control file, using supported versions dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \ -Vpybind11:Upstream-Version=2.13 -Vpybind11:Next-Upstream-Version=3 dpkg-gencontrol: warning: Depends field of package python3-mshr: substitution variable ${python3:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libmshr64-dev: substitution variable ${shlibs:Depends} used, but is not defined make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb'. dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1389757 and its subdirectories I: Current time: Sun Oct 18 19:54:34 +14 2026 I: pbuilder-time-stamp: 1792302874 + false + set +x Sun Oct 18 05:54:34 UTC 2026 I: Signing ./b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo as mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc Sun Oct 18 05:54:34 UTC 2026 I: Signed ./b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo as ./b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc Sun Oct 18 05:54:34 UTC 2026 - build #2 for mshr/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Sun Oct 18 05:54:34 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-32vSghba, removing. /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO: total 392 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:07 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 14 23:31 b2 -rw-rw-r-- 1 jenkins jenkins 3128 Sep 13 06:56 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -rw------- 1 jenkins jenkins 383507 Sep 14 23:07 rbuildlog.kfuV3Co /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1: total 108844 -rw-r--r-- 1 jenkins jenkins 378860 Sep 14 23:07 build.log -rw-r--r-- 1 jenkins jenkins 15884 Sep 14 23:07 libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 636428 Sep 14 23:07 libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 40628 Sep 14 23:07 libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402136 Sep 14 23:07 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1843296 Sep 14 23:07 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402608 Sep 14 23:07 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1839716 Sep 14 23:07 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6220 Sep 14 23:07 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 14352 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 3128 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -rw-r--r-- 1 jenkins jenkins 21065 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 21947 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 7246 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes -rw-r--r-- 1 jenkins jenkins 2277 Sep 14 23:07 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes -rw-r--r-- 1 jenkins jenkins 1689328 Sep 14 23:07 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122176 Sep 14 23:07 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1689316 Sep 14 23:07 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122664 Sep 14 23:07 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 9208 Sep 14 23:07 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2: total 108700 -rw-rw-r-- 1 jenkins jenkins 380784 Sep 14 23:31 build.log -rw-r--r-- 1 jenkins jenkins 15884 Sep 14 23:31 libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 636428 Sep 14 23:31 libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 40628 Sep 14 23:31 libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402136 Sep 14 23:31 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1843296 Sep 14 23:31 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 51402608 Sep 14 23:31 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1839716 Sep 14 23:31 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 6220 Sep 14 23:31 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 14352 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 3128 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc -rw-rw-r-- 1 jenkins jenkins 21059 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 21941 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 7246 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes -rw-rw-r-- 1 jenkins jenkins 2277 Sep 14 23:31 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes -rw-r--r-- 1 jenkins jenkins 1689328 Sep 14 23:31 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122176 Sep 14 23:31 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 1689316 Sep 14 23:31 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 122664 Sep 14 23:31 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb -rw-r--r-- 1 jenkins jenkins 9208 Sep 14 23:31 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb Sun Sep 14 23:31:35 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. Sun Sep 14 23:31:36 UTC 2025 I: mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes: Format: 1.8 Date: Sat, 13 Sep 2025 06:12:51 +0000 Source: mshr Binary: libmshr-dev libmshr-dev-common libmshr-dev-dbgsym libmshr2019.2 libmshr2019.2-dbgsym libmshr64-2019.2 libmshr64-2019.2-dbgsym libmshr64-dev python3-mshr python3-mshr-real python3-mshr-real-dbgsym python3-mshr64-real python3-mshr64-real-dbgsym Architecture: amd64 all Version: 2019.2.0~git20230811.ff54a68+dfsg1-5 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Francesco Ballarin Description: libmshr-dev - Shared links and header files for mshr libmshr-dev-common - Shared links and header files for mshr libmshr2019.2 - Shared libraries for mshr libmshr64-2019.2 - Shared libraries for mshr with 64-bit indexing libmshr64-dev - Shared links and header files for mshr with 64-bit indexing python3-mshr - Python 3 interface for mshr python3-mshr-real - Python 3 interface for mshr python3-mshr64-real - Python 3 interface for mshr with 64-bit indexing Changes: mshr (2019.2.0~git20230811.ff54a68+dfsg1-5) unstable; urgency=medium . * Fix Debian Science Maintainers name [Alexandre Detiste] * Update Francesco Ballarin's email address * Standards-Version: 4.7.2 (routine-update) * Reorder sequence of d/control fields by cme (routine-update) * Secure URI in copyright format (routine-update) * Drop useless get-orig-source target (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Do not parse d/changelog, as suggested by routine-update: - Get DEB_VERSION from /usr/share/dpkg/default.mk in d/rules - Drop usage of DISTRIBUTION from d/rules: it seems that the variable is not actually used anywhere * Use secure URI in Homepage field (routine-update) * Add missing build dependency on python3-numpy-dev for command dh_numpy3 (routine-update). * watch file standard 4 (routine-update) Checksums-Sha1: 7b918fb082b8cfd9f7b964934d59f2ae393461b8 15884 libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb ad371b92134422b013f76314a03c14da210adb9f 636428 libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb ce2df7d5271ed0a038bc4a3a6a254d59bcd19942 40628 libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 1194f2c1229824b5e8e2bc038e8980966cbad9db 51402136 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb d38008b844fe58df27020c9d09b651d194f701e1 1843296 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 121bc7f5034992a9f49188502b41fa084d03626b 51402608 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb d6a00a068eaefacf6c2cc4da257f30dd0099be66 1839716 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 1c1d7850c6e65f7d3dd85fe2657ae0bedb79632f 6220 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 68c4bd0d1d8598842928575ac36681e8f0be8d3a 21065 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo f19143c2a671b117d39ba881e272ea5ebc61c1c5 1689328 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb f321450573e2245c48aace107669a3cd7625b3b0 122176 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 288ad8175717b79018b2fa00bb527be2e29f8484 1689316 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 722f2f41f88e4b80f4d3d02e4b22d7b3d63f1826 122664 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb a2c455aecbb443f7f2160aab0a851ed785d687c3 9208 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb Checksums-Sha256: dd075074df342afd7166fcae3848c3a771843dda0ca1fa17005c28f9cd7e64b1 15884 libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 759ef1813f4f187799d7384af51f9b54fa9d4b4f1ec35c9e4e75b246512ac9b9 636428 libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 1f7a281cb229566e7b316687838600d92225ffb701efdf1ee3586de69249ed43 40628 libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 1bb2b73e5d6c24db036abdd0dc8c1ebe433996451f0767162705f09502ebc9ef 51402136 libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 1c66f376d924acedab3d4e0a4a5b147cff74599df107cce47c8e415b9a8440ec 1843296 libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 2afb01389cd334cdcad476f631e7da4b918015395a641c3f8dd307f22a05c501 51402608 libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb ea3fb9a509222b271506a2f2c06425a8f11f411c32f84e4e70d621f5bc9ddaf0 1839716 libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb b72395ef944d98237ad11104de1b95afc8d9334bb149ea208e76099e3b57c53a 6220 libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 95e74cfaeb50c62bb733d1d136c64bbfd3232eeb302ce91985670b6ef865bb28 21065 mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo dedc34ba4fe81ca9ca2865f0bd5a95ac795ee04aaad379c588a84730ebd8f799 1689328 python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb fbbb9230bddf36972929bc9c4bf4f163b836a616158ad6afff80435b43827452 122176 python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 960610e4ba6bc20b87e8dcdc2e5bbb38c12360570fa3ec941ca87f153a46c090 1689316 python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb ebf4e4b238e7b1e27fe002629b7c4179e1a89617c5e58ced7bababd4ed3b84ef 122664 python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb bb81aa57ee730cc1c280506e9e7cc6af8ef1b0a7ab4b2898734ec661b59de478 9208 python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb Files: 8a845d85ed484e8f42758e25f1410a53 15884 libdevel optional libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb d08b7cda4c72da422b92056ec93f7680 636428 debug optional libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 23384b8344d33ea691355f820c1d8937 40628 libdevel optional libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 6df2f3babbf46145d631b1d7de9b15c8 51402136 debug optional libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb c1b1a4600f204c07c9f2e2b28f73deb9 1843296 libs optional libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 48829c9c63ca4c9aac6daad4c65d7568 51402608 debug optional libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 95a7116da94cd9c551966d95b04fbc35 1839716 libs optional libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb f49346f67d215b826092b99815c44fb0 6220 libdevel optional libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb e75ccfb2d3139cfc1dd6568a9b1da47d 21065 math optional mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo f6f752d4ed4d078cff998d7ee08034f5 1689328 debug optional python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 45a726e45050116a83649abf9a4f3021 122176 python optional python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 009ea39f584ea561c79cb39ce06ae855 1689316 debug optional python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb dbf8eb590ce9066273033a9ef75bf088 122664 python optional python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb 0d2aacce86fef0d43f6372d72d271c8f 9208 python optional python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 23:07:48.493100414 +0000 +++ b2/build.log 2025-09-14 23:31:34.962871266 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Sep 14 10:43:30 -12 2025 -I: pbuilder-time-stamp: 1757889810 +I: Current time: Sun Oct 18 19:30:51 +14 2026 +I: pbuilder-time-stamp: 1792301451 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying CGAL_6_compatibility.diff I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 18 05:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='399f18d421f447fe81d46860d3b82cdc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2919999' - PS1='# ' - PS2='> ' + INVOCATION_ID=b4edef685f91448e9bfa992832cb6dc0 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1389757 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_zmPA --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1 --logfile b1/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/pbuilderrc_Chqj --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2 --logfile b2/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2919999/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -514,7 +546,7 @@ Get: 367 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.2-1+b1 [305 kB] Get: 368 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real all 3.22.2-1 [6608 B] Get: 369 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.2-1 [6828 B] -Fetched 429 MB in 9s (50.5 MB/s) +Fetched 429 MB in 8s (53.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -1687,8 +1719,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Sep 14 22:48:48 UTC 2025. -Universal Time is now: Sun Sep 14 22:48:48 UTC 2025. +Local time is now: Sun Oct 18 05:34:53 UTC 2026. +Universal Time is now: Sun Oct 18 05:34:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-5) ... @@ -2079,7 +2111,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_source.changes dpkg-buildpackage: info: source package mshr dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-5 dpkg-buildpackage: info: source distribution unstable @@ -2198,7 +2234,7 @@ -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled --- Configuring done (3.1s) +-- Configuring done (2.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -2298,7 +2334,7 @@ -- Check size of PetscInt - failed -- Checking for one of the modules 'crayslepc_real;slepc;SLEPc' -- Testing disabled --- Configuring done (1.7s) +-- Configuring done (2.2s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -3044,28 +3080,28 @@ -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain2D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/GlobalInitializer.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu' @@ -3085,28 +3121,28 @@ -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h --- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h +-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake -- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64' @@ -3161,7 +3197,7 @@ -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so --- Configuring done (2.9s) +-- Configuring done (0.9s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build running build @@ -3190,8 +3226,8 @@ running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr -copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr +copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info @@ -3246,7 +3282,7 @@ -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/include (found version "2.13.6") -- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so --- Configuring done (0.6s) +-- Configuring done (0.8s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64 running build @@ -3275,8 +3311,8 @@ running install_lib creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr -copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr +copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc running install_egg_info running egg_info @@ -3389,19 +3425,19 @@ make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1' dh_md5sums -O--buildsystem=cmake -O--no-parallel dh_builddeb -O--buildsystem=cmake -O--no-parallel -dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb'. -dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_all.deb'. +dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. -dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. +dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.deb'. dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3409,12 +3445,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1389757/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2919999 and its subdirectories -I: Current time: Sun Sep 14 11:07:47 -12 2025 -I: pbuilder-time-stamp: 1757891267 +I: removing directory /srv/workspace/pbuilder/1389757 and its subdirectories +I: Current time: Sun Oct 18 19:54:34 +14 2026 +I: pbuilder-time-stamp: 1792302874 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diff: 83.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diff.gz b2/build.log: 89.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 89.4% -- replaced with stdout Sun Sep 14 23:31:37 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_mshr_unstable_amd64_1757892697 + touch /var/log/reproducible-builds/diffoscope_stamp_mshr_unstable_amd64_1757892697 + RESULT=0 + systemd-run '--description=diffoscope on mshr/2019.2.0~git20230811.ff54a68+dfsg1-5 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_37-82743 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO --run-session -c jenkins-reproducible-unstable-diffoscope-5a7eea89-a0fc-40e7-a51d-a217099a2a19 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/dbd-tmp-5BCH6nR ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_37-82743.service; invocation ID: a9edce11f16c4a59ba2feb52ea731b26 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.TqZTOEFO/b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 211ms CPU time consumed: 171ms Memory peak: 17.6M (swap: 0B) _ _ __ ___ ___| |__ _ __ | '_ ` _ \/ __| '_ \| '__| | | | | | \__ \ | | | | |_| |_| |_|___/_| |_|_| Sun Sep 14 23:31:37 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Sun Sep 14 23:31:37 UTC 2025 I: mshr from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-14 23:31:38] INFO: Starting at 2025-09-14 23:31:38.283221 [2025-09-14 23:31:38] INFO: Generating the pages of 1 package(s) [2025-09-14 23:31:38] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/mshr didn't produce a buildlog, even though it has been built. [2025-09-14 23:31:38] INFO: Finished at 2025-09-14 23:31:38.547731, took: 0:00:00.264513 Sun Sep 14 23:31:38 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/mshr.html Sun Sep 14 23:31:38 UTC 2025 I: Removing signed mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc files: removed './b1/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc' removed './b2/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5_amd64.buildinfo.asc' 1757892698 amd64 unstable mshr Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.rbuild.log: 88.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/mshr_2019.2.0~git20230811.ff54a68+dfsg1-5.rbuild.log.gz [2025-09-14 23:31:38] INFO: Starting at 2025-09-14 23:31:38.886627 [2025-09-14 23:31:39] INFO: Generating the pages of 1 package(s) [2025-09-14 23:31:39] INFO: Finished at 2025-09-14 23:31:39.151397, took: 0:00:00.264773 All cleanup done. Sun Sep 14 23:31:39 UTC 2025 - total duration: 0h 48m 27s. Sun Sep 14 23:31:39 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-8QtAJoo6, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 48min 29.183s CPU time consumed: 4.942s Memory peak: 258.8M (swap: 0B)