Running as unit: rb-build-amd64_38-79355.service; invocation ID: 6031f9deed694962af4ebe9381d0be9c ==================================================================================== Thu Sep 18 21:13:42 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_amd64_38) on jenkins, called using "infom02-amd64 infom01-amd64" as arguments. Thu Sep 18 21:13:42 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-mIg8tJTp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 21:13:42 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Thu Sep 18 21:13:42 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-unrlPa' Thu Sep 18 21:13:42 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Sep 18 21:13:42 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-MrSBpw' ok, let's check if libbio-coordinate-perl is building anywhere yet… ok, libbio-coordinate-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbio-coordinate-perl in unstable on amd64 on jenkins now. 1st build will be done on infom02-amd64.debian.net. 2nd build will be done on infom01-amd64.debian.net. ============================================================================= Thu Sep 18 21:14:05 UTC 2025 I: starting to build libbio-coordinate-perl/unstable/amd64 on jenkins on '2025-09-18 21:13' Thu Sep 18 21:14:05 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_38/79355/console.log 1758230045 amd64 unstable libbio-coordinate-perl Thu Sep 18 21:14:05 UTC 2025 I: Downloading source for unstable/libbio-coordinate-perl=1.7.1-4 --2025-09-18 21:14:06-- http://deb.debian.org/debian/pool/main/libb/libbio-coordinate-perl/libbio-coordinate-perl_1.7.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2171 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-coordinate-perl_1.7.1-4.dsc’ 0K .. 100% 256M=0s 2025-09-18 21:14:06 (256 MB/s) - ‘libbio-coordinate-perl_1.7.1-4.dsc’ saved [2171/2171] --2025-09-18 21:14:06-- http://deb.debian.org/debian/pool/main/libb/libbio-coordinate-perl/libbio-coordinate-perl_1.7.1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2171 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-coordinate-perl_1.7.1-4.dsc’ 0K .. 100% 256M=0s 2025-09-18 21:14:06 (256 MB/s) - ‘libbio-coordinate-perl_1.7.1-4.dsc’ saved [2171/2171] Thu Sep 18 21:14:06 UTC 2025 I: libbio-coordinate-perl_1.7.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all Version: 1.7.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://metacpan.org/release/Bio-Coordinate Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/libbio-coordinate-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: bioperl (>= 1.7.1), perl Package-List: libbio-coordinate-perl deb perl optional arch=all Checksums-Sha1: c6c03b7406c85c7fca0e8488635d933089449967 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz 5c7f281dc78f80d21a48e3c7e8d50ba8e810253f 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz Checksums-Sha256: 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz bf01a6c0dee853676de704f203700ff758c1096e247b97a258ec958c4e146143 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz Files: 7353a7d2f672a69f573aa08b86b4ddab 44111 libbio-coordinate-perl_1.7.1.orig.tar.gz 8d5ec6405bea1b93258a52c858482828 2836 libbio-coordinate-perl_1.7.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+9G5wRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEuxQ//fc0WJBarWAm8k5+0enYYhbPUUErW+JUC mAnTjck8rC4Zr5z4ebOJ/iDFyuxzbSlWByjFIkEzjY551HrD5xQlot1nqaNRttBa 09nC5K24NuwkgESpjjGBgCFvzfOy4roi8Z2h1+ZWQxF7zj0CyrogtMY9B5gv9qQu jrWSmR+lpf2R4H3yse+LTWGJt24tZaa7+VfT6/R0n3oZQFFIIX3g7LpsvL9JFmlx Mm2lBkyyRAXBvxYaom4j1ZV348m2kVPk3ue1lk/NZkUEBDcewJINcnOan0Qfhwng YNVMpCsGYuBKLj1OLV/flbvZSa82pv7ePcRzPAbltxNWHttFHiGkVkjxuSvKCUEm w08Zsrhp3j33WlJlD2O3um6LU5WgzNxW1/gYNciNDJGl4a/h7cEInTvmqYDVeTBy U3++yJFNLNca4KJIxJ8aeKkFSWank2ZZSb8PgVVsBG1nmScjTEmS4P49zqycxALL VQW78+APPVmwdrut+dFG72O+4We3uxV9ibOpJrgoaKbE+XtgZAD3CyJB+S11LVVy 5z8EaWkDcwuP3ys2xKKrtKro5f6UV84NjNV0fRb34ApUCZu/gIZ2zVj2dyT4DMsE enuHL4uJjWrAvgovM1Z9ie+uPD5fWTxuPLCuaqxQovruKoUWpmTTpreu99+da3ek ro6HZj+4Hw4= =hFOD -----END PGP SIGNATURE----- Thu Sep 18 21:14:06 UTC 2025 I: Checking whether the package is not for us Thu Sep 18 21:14:06 UTC 2025 I: Starting 1st build on remote node infom02-amd64.debian.net. Thu Sep 18 21:14:06 UTC 2025 I: Preparing to do remote build '1' on infom02-amd64.debian.net. Thu Sep 18 21:14:06 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom02-amd64.debian.net is marked as down. Thu Sep 18 21:14:06 UTC 2025 - checking via ssh if infom02-amd64.debian.net is up. removed '/tmp/read-only-fs-test-naTutF' ==================================================================================== Thu Oct 22 03:37:06 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom02-amd64, called using "1 libbio-coordinate-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL 1.7.1-4" as arguments. Thu Oct 22 03:37:06 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-P4IVgaYk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Oct 22 03:37:06 UTC 2026 I: Downloading source for unstable/libbio-coordinate-perl=1.7.1-4 Reading package lists... NOTICE: 'libbio-coordinate-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-coordinate-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 49.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (dsc) [2171 B] Get:2 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (tar) [44.1 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (diff) [2836 B] Fetched 49.1 kB in 0s (825 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-coordinate-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-coordinate-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 49.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (dsc) [2171 B] Get:2 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (tar) [44.1 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (diff) [2836 B] Fetched 49.1 kB in 0s (825 kB/s) Download complete and in download only mode ============================================================================= Building libbio-coordinate-perl in unstable on amd64 on infom02-amd64 now. Date: Thu Oct 22 03:37:07 UTC 2026 Date UTC: Thu Oct 22 03:37:07 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 15:37:07 -12 2026 I: pbuilder-time-stamp: 1792640227 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-coordinate-perl_1.7.1-4.dsc] I: copying [./libbio-coordinate-perl_1.7.1.orig.tar.gz] I: copying [./libbio-coordinate-perl_1.7.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-coordinate-perl_1.7.1-4.dsc: no acceptable signature found dpkg-source: info: extracting libbio-coordinate-perl in libbio-coordinate-perl-1.7.1 dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='885023a38410498b9f80ee1df58c7adf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3166622' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_kaqW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1 --logfile b1/build.log libbio-coordinate-perl_1.7.1-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), bioperl (>= 1.7.1), perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.1); however: Package bioperl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libio-string-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 14.7 MB of archives. After unpacking 53.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-2 [231 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Fetched 14.7 MB in 1s (14.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build make -j16 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm Manifying 13 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_auto_test make -j16 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..13 ok 1 - Bio/Coordinate.pm loaded ok ok 2 - Bio/Coordinate/Chain.pm loaded ok ok 3 - Bio/Coordinate/Collection.pm loaded ok ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok ok 6 - Bio/Coordinate/Graph.pm loaded ok ok 7 - Bio/Coordinate/MapperI.pm loaded ok ok 8 - Bio/Coordinate/Pair.pm loaded ok ok 9 - Bio/Coordinate/Result.pm loaded ok ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok ok 11 - Bio/Coordinate/Result/Match.pm loaded ok ok 12 - Bio/Coordinate/ResultI.pm loaded ok ok 13 - Bio/Coordinate/Utils.pm loaded ok ok t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/CoordinateBoundaryTest.t .. 1..174 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 5 ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 7 ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 9 ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 11 ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 33 ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 35 ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 51 ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 53 ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 69 ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 71 ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 89 ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 91 ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 109 ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 111 ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 113 ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 115 ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 133 ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 143 ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 153 ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 165 ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok t/CoordinateGraph.t ......... 1..7 ok 1 - use Bio::Coordinate::Graph; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/CoordinateMapper.t ........ 1..175 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::Result::Match; ok 4 - use Bio::Coordinate::Result::Gap; ok 5 - use Bio::Coordinate::Chain; ok 6 - use Bio::Coordinate::Collection; ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI' ok 16 ok 17 ok 18 ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI' ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap' ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 - Match: |314696| Test: 314696| ok 139 ok 140 ok 141 ok 142 - Match: |341| Test: 341| ok 143 ok 144 ok 145 ok 146 - Match: |315843| Test: 315843| ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - Match: |627011| Test: 627011| ok 153 ok 154 ok 155 ok 156 - Match: |chr1| Test: chr1| ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok t/GeneCoordinateMapper.t .... 1..116 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::ExtrapolatingPair; ok 4 - use Bio::Coordinate::GeneMapper; ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. Files=8, Tests=485, 1 wallclock secs ( 0.07 usr 0.03 sys + 1.22 cusr 0.28 csys = 1.60 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-coordinate-perl/ make -j16 install DESTDIR=/build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' Manifying 13 pod documents Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3166622 and its subdirectories I: Current time: Wed Oct 21 15:38:15 -12 2026 I: pbuilder-time-stamp: 1792640295 Thu Oct 22 03:38:15 UTC 2026 I: Signing ./b1/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo as libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc Thu Oct 22 03:38:15 UTC 2026 I: Signed ./b1/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo as ./b1/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc Thu Oct 22 03:38:15 UTC 2026 - build #1 for libbio-coordinate-perl/unstable/amd64 on infom02-amd64 done. Starting cleanup. All cleanup done. Thu Oct 22 03:38:15 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-P4IVgaYk, removing. /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:15 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:14 b2 -rw-rw-r-- 1 jenkins jenkins 2171 Nov 24 2020 libbio-coordinate-perl_1.7.1-4.dsc -rw------- 1 jenkins jenkins 3381 Sep 18 21:14 rbuildlog.SgFc1UF /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1: total 128 -rw-r--r-- 1 jenkins jenkins 37442 Sep 18 21:15 build.log -rw-r--r-- 1 jenkins jenkins 2836 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2171 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4.dsc -rw-r--r-- 1 jenkins jenkins 53532 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_all.deb -rw-r--r-- 1 jenkins jenkins 5185 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6067 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1424 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1592 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2: total 0 Thu Sep 18 21:15:16 UTC 2025 I: Deleting $TMPDIR on infom02-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 15:37:07 -12 2026 I: pbuilder-time-stamp: 1792640227 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-coordinate-perl_1.7.1-4.dsc] I: copying [./libbio-coordinate-perl_1.7.1.orig.tar.gz] I: copying [./libbio-coordinate-perl_1.7.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-coordinate-perl_1.7.1-4.dsc: no acceptable signature found dpkg-source: info: extracting libbio-coordinate-perl in libbio-coordinate-perl-1.7.1 dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='885023a38410498b9f80ee1df58c7adf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3166622' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_kaqW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1 --logfile b1/build.log libbio-coordinate-perl_1.7.1-4.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), bioperl (>= 1.7.1), perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.1); however: Package bioperl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libio-string-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 14.7 MB of archives. After unpacking 53.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-2 [231 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Fetched 14.7 MB in 1s (14.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../15-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../16-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../17-libbio-perl-perl_1.7.8-2_all.deb ... Unpacking libbio-perl-perl (1.7.8-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../18-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../19-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../20-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../21-libtest-deep-perl_1.205-1_all.deb ... Unpacking libtest-deep-perl (1.205-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../22-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../23-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../24-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../25-libtest-differences-perl_0.72-1_all.deb ... Unpacking libtest-differences-perl (0.72-1) ... Selecting previously unselected package libsub-uplevel-perl. 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Preparing to unpack .../44-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.72-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build make -j16 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm Manifying 13 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_auto_test make -j16 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..13 ok 1 - Bio/Coordinate.pm loaded ok ok 2 - Bio/Coordinate/Chain.pm loaded ok ok 3 - Bio/Coordinate/Collection.pm loaded ok ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok ok 6 - Bio/Coordinate/Graph.pm loaded ok ok 7 - Bio/Coordinate/MapperI.pm loaded ok ok 8 - Bio/Coordinate/Pair.pm loaded ok ok 9 - Bio/Coordinate/Result.pm loaded ok ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok ok 11 - Bio/Coordinate/Result/Match.pm loaded ok ok 12 - Bio/Coordinate/ResultI.pm loaded ok ok 13 - Bio/Coordinate/Utils.pm loaded ok ok t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/CoordinateBoundaryTest.t .. 1..174 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 5 ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 7 ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 9 ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 11 ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 33 ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 35 ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 51 ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 53 ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 69 ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 71 ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 89 ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 91 ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 109 ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 111 ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 113 ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 115 ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 133 ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 143 ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 153 ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 165 ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok t/CoordinateGraph.t ......... 1..7 ok 1 - use Bio::Coordinate::Graph; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/CoordinateMapper.t ........ 1..175 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::Result::Match; ok 4 - use Bio::Coordinate::Result::Gap; ok 5 - use Bio::Coordinate::Chain; ok 6 - use Bio::Coordinate::Collection; ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI' ok 16 ok 17 ok 18 ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI' ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap' ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 - Match: |314696| Test: 314696| ok 139 ok 140 ok 141 ok 142 - Match: |341| Test: 341| ok 143 ok 144 ok 145 ok 146 - Match: |315843| Test: 315843| ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - Match: |627011| Test: 627011| ok 153 ok 154 ok 155 ok 156 - Match: |chr1| Test: chr1| ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok t/GeneCoordinateMapper.t .... 1..116 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::ExtrapolatingPair; ok 4 - use Bio::Coordinate::GeneMapper; ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. Files=8, Tests=485, 1 wallclock secs ( 0.07 usr 0.03 sys + 1.22 cusr 0.28 csys = 1.60 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-coordinate-perl/ make -j16 install DESTDIR=/build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' Manifying 13 pod documents Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3166622 and its subdirectories I: Current time: Wed Oct 21 15:38:15 -12 2026 I: pbuilder-time-stamp: 1792640295 Thu Sep 18 21:15:16 UTC 2025 I: 1st build successful. Starting 2nd build on remote node infom01-amd64.debian.net. Thu Sep 18 21:15:16 UTC 2025 I: Preparing to do remote build '2' on infom01-amd64.debian.net. Thu Sep 18 21:15:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if infom01-amd64.debian.net is marked as down. Thu Sep 18 21:15:16 UTC 2025 - checking via ssh if infom01-amd64.debian.net is up. removed '/tmp/read-only-fs-test-IghIG2' ==================================================================================== Thu Sep 18 21:15:17 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on infom01-amd64, called using "2 libbio-coordinate-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL 1.7.1-4" as arguments. Thu Sep 18 21:15:17 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-6YbnfmvN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 18 21:15:17 UTC 2025 I: Downloading source for unstable/libbio-coordinate-perl=1.7.1-4 Reading package lists... NOTICE: 'libbio-coordinate-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-coordinate-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 49.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (dsc) [2171 B] Get:2 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (tar) [44.1 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (diff) [2836 B] Fetched 49.1 kB in 0s (508 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-coordinate-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-coordinate-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-coordinate-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 49.1 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (dsc) [2171 B] Get:2 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (tar) [44.1 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-coordinate-perl 1.7.1-4 (diff) [2836 B] Fetched 49.1 kB in 0s (508 kB/s) Download complete and in download only mode ============================================================================= Re-Building libbio-coordinate-perl in unstable on amd64 on infom01-amd64 now. Date: Thu Sep 18 21:15:17 UTC 2025 Date UTC: Thu Sep 18 21:15:17 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_O8qW + case ${ARCH} in + case $ARCH in + locale=et_EE + language=et + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbio-coordinate-perl = debian-installer -o libbio-coordinate-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbio-coordinate-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_O8qW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2 --logfile b2/build.log libbio-coordinate-perl_1.7.1-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 19 11:15:17 +14 2025 I: pbuilder-time-stamp: 1758230117 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-coordinate-perl_1.7.1-4.dsc] I: copying [./libbio-coordinate-perl_1.7.1.orig.tar.gz] I: copying [./libbio-coordinate-perl_1.7.1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libbio-coordinate-perl_1.7.1-4.dsc: no acceptable signature found dpkg-source: info: extracting libbio-coordinate-perl in libbio-coordinate-perl-1.7.1 dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1.orig.tar.gz dpkg-source: info: unpacking libbio-coordinate-perl_1.7.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D01_modify_environment starting debug: Running on infom01-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 18 21:15 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=42416ff83b5a446f9324a460131e848b LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=631270 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_O8qW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2 --logfile b2/build.log libbio-coordinate-perl_1.7.1-4.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), bioperl (>= 1.7.1), perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on bioperl (>= 1.7.1); however: Package bioperl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bioperl{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libexception-class-perl{a} libfile-stripnondeterminism-perl{a} libio-string-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libapache-dbi-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libcache-cache-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libdbi-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libhttp-message-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl libyaml-perl lynx perl-doc perl-tk wget 0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 14.7 MB of archives. After unpacking 53.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41.1-3 [100 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libdata-stag-perl all 0.14-3 [448 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libbio-perl-perl all 1.7.8-2 [2498 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 20 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libtest-deep-perl all 1.205-1 [52.3 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libtest-differences-perl all 0.72-1 [17.7 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 bioperl all 1.7.8-2 [231 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] Fetched 14.7 MB in 0s (55.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.1-3_amd64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../08-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../15-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../16-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../17-libbio-perl-perl_1.7.8-2_all.deb ... Unpacking libbio-perl-perl (1.7.8-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../18-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../19-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../20-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../21-libtest-deep-perl_1.205-1_all.deb ... Unpacking libtest-deep-perl (1.205-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../22-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../23-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../24-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../25-libtest-differences-perl_0.72-1_all.deb ... Unpacking libtest-differences-perl (0.72-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../26-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../27-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../28-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../29-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package bioperl. Preparing to unpack .../30-bioperl_1.7.8-2_all.deb ... Unpacking bioperl (1.7.8-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../31-libdebhelper-perl_13.26_all.deb ... Unpacking libdebhelper-perl (13.26) ... Selecting previously unselected package libtool. Preparing to unpack .../32-libtool_2.5.4-5_all.deb ... Unpacking libtool (2.5.4-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../33-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../35-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../36-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../37-libelf1t64_0.193-3_amd64.deb ... Unpacking libelf1t64:amd64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../38-dwz_0.16-2_amd64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../39-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../40-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../41-gettext_0.23.1-2+b1_amd64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../42-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../43-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../44-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libtest-deep-perl (1.205-1) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20240727.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up dwz (0.16-2) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.72-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libtest-exception-perl (0.43-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up bioperl (1.7.8-2) ... Setting up debhelper (13.26) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/631270/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/631270/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2" "LD=x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-coordinate-perl-1.7.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm Manifying 13 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. 1..13 ok 1 - Bio/Coordinate.pm loaded ok ok 2 - Bio/Coordinate/Chain.pm loaded ok ok 3 - Bio/Coordinate/Collection.pm loaded ok ok 4 - Bio/Coordinate/ExtrapolatingPair.pm loaded ok ok 5 - Bio/Coordinate/GeneMapper.pm loaded ok ok 6 - Bio/Coordinate/Graph.pm loaded ok ok 7 - Bio/Coordinate/MapperI.pm loaded ok ok 8 - Bio/Coordinate/Pair.pm loaded ok ok 9 - Bio/Coordinate/Result.pm loaded ok ok 10 - Bio/Coordinate/Result/Gap.pm loaded ok ok 11 - Bio/Coordinate/Result/Match.pm loaded ok ok 12 - Bio/Coordinate/ResultI.pm loaded ok ok 13 - Bio/Coordinate/Utils.pm loaded ok ok t/author-mojibake.t ......... skipped: these tests are for testing by the author t/author-pod-syntax.t ....... skipped: these tests are for testing by the author t/CoordinateBoundaryTest.t .. 1..174 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 ok 4 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 5 ok 6 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 7 ok 8 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 9 ok 10 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 11 ok 12 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 33 ok 34 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 35 ok 36 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 51 ok 52 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 53 ok 54 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 69 ok 70 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 71 ok 72 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 - An object of class 'Bio::Location::Simple' isa 'Bio::LocationI' ok 89 ok 90 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 91 ok 92 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 109 ok 110 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 111 ok 112 - An object of class 'Bio::Location::Simple' isa 'Bio::Location::Simple' ok 113 ok 114 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 115 ok 116 - An object of class 'Bio::Coordinate::Pair' isa 'Bio::Coordinate::Pair' ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 133 ok 134 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 143 ok 144 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 153 ok 154 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 165 ok 166 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok t/CoordinateGraph.t ......... 1..7 ok 1 - use Bio::Coordinate::Graph; ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/CoordinateMapper.t ........ 1..175 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::Result::Match; ok 4 - use Bio::Coordinate::Result::Gap; ok 5 - use Bio::Coordinate::Chain; ok 6 - use Bio::Coordinate::Collection; ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Coordinate::Result' ok 15 - An object of class 'Bio::Coordinate::Result' isa 'Bio::Location::SplitLocationI' ok 16 ok 17 ok 18 ok 19 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::LocationI' ok 20 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::Coordinate::Result::Gap' ok 38 - An object of class 'Bio::Coordinate::Result::Gap' isa 'Bio::LocationI' ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Coordinate::Result::Match' ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 - Match: |314696| Test: 314696| ok 139 ok 140 ok 141 ok 142 - Match: |341| Test: 341| ok 143 ok 144 ok 145 ok 146 - Match: |315843| Test: 315843| ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 - Match: |627011| Test: 627011| ok 153 ok 154 ok 155 ok 156 - Match: |chr1| Test: chr1| ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok t/GeneCoordinateMapper.t .... 1..116 ok 1 - use Bio::Location::Simple; ok 2 - use Bio::Coordinate::Pair; ok 3 - use Bio::Coordinate::ExtrapolatingPair; ok 4 - use Bio::Coordinate::GeneMapper; ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 - An object of class 'Bio::Coordinate::Result::Match' isa 'Bio::Location::Simple' ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. Files=8, Tests=485, 1 wallclock secs ( 0.04 usr 0.03 sys + 0.74 cusr 0.24 csys = 1.05 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-coordinate-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' Manifying 13 pod documents Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-coordinate-perl' in '../libbio-coordinate-perl_1.7.1-4_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.buildinfo dpkg-genchanges --build=binary -O../libbio-coordinate-perl_1.7.1-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/631270/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/631270/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/631270 and its subdirectories I: Current time: Fri Sep 19 11:16:09 +14 2025 I: pbuilder-time-stamp: 1758230169 + false + set +x Thu Sep 18 21:16:09 UTC 2025 I: Signing ./b2/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo as libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc Thu Sep 18 21:16:09 UTC 2025 I: Signed ./b2/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo as ./b2/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc Thu Sep 18 21:16:09 UTC 2025 - build #2 for libbio-coordinate-perl/unstable/amd64 on infom01-amd64 done. Starting cleanup. All cleanup done. Thu Sep 18 21:16:09 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6YbnfmvN, removing. /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL: total 56 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:15 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 18 21:16 b2 -rw-rw-r-- 1 jenkins jenkins 2171 Nov 24 2020 libbio-coordinate-perl_1.7.1-4.dsc -rw------- 1 jenkins jenkins 41112 Sep 18 21:15 rbuildlog.SgFc1UF /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1: total 132 -rw-r--r-- 1 jenkins jenkins 37442 Sep 18 21:15 build.log -rw-r--r-- 1 jenkins jenkins 2836 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2171 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4.dsc -rw-r--r-- 1 jenkins jenkins 53532 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_all.deb -rw-r--r-- 1 jenkins jenkins 5185 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6067 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1424 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_amd64.changes -rw-r--r-- 1 jenkins jenkins 1592 Sep 18 21:15 libbio-coordinate-perl_1.7.1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2: total 128 -rw-rw-r-- 1 jenkins jenkins 39368 Sep 18 21:16 build.log -rw-r--r-- 1 jenkins jenkins 2836 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2171 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4.dsc -rw-r--r-- 1 jenkins jenkins 53532 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4_all.deb -rw-rw-r-- 1 jenkins jenkins 5191 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6073 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1424 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4_amd64.changes -rw-rw-r-- 1 jenkins jenkins 1592 Sep 18 21:16 libbio-coordinate-perl_1.7.1-4_source.changes Thu Sep 18 21:16:09 UTC 2025 I: Deleting $TMPDIR on infom01-amd64.debian.net. Thu Sep 18 21:16:10 UTC 2025 I: libbio-coordinate-perl_1.7.1-4_amd64.changes: Format: 1.8 Date: Tue, 24 Nov 2020 15:39:07 +0100 Source: libbio-coordinate-perl Binary: libbio-coordinate-perl Architecture: all Version: 1.7.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbio-coordinate-perl - BioPerl modules for working with biological coordinates Changes: libbio-coordinate-perl (1.7.1-4) unstable; urgency=medium . * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: ad8435f9575ecc68ac18c8f9022d53bf25c7fb18 53532 libbio-coordinate-perl_1.7.1-4_all.deb 90305bcb44676e8e7f0cda9fb02382a4b8623749 5185 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo Checksums-Sha256: 1f712e22da1a9216c39cabe988d32dc2dd5fcc83fb03add7585ed97ddfb17707 53532 libbio-coordinate-perl_1.7.1-4_all.deb eccb8a335bc79d3afbda47fbcb2203aaaf94f1cd3fbb9a759f4f9f82f4b00e50 5185 libbio-coordinate-perl_1.7.1-4_amd64.buildinfo Files: e971efb6bd28bb5857150ccffe3f8704 53532 perl optional libbio-coordinate-perl_1.7.1-4_all.deb f8fd3f8b57a8cea5c33a0d0c1856a675 5185 perl optional libbio-coordinate-perl_1.7.1-4_amd64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-coordinate-perl_1.7.1-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-coordinate-perl_1.7.1-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libbio-coordinate-perl_1.7.1-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/libbio-coordinate-perl_1.7.1-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libbio-coordinate-perl_1.7.1-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-09-18 21:15:15.931893193 +0000 +++ b2/build.log 2025-09-18 21:16:09.739968737 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 21 15:37:07 -12 2026 -I: pbuilder-time-stamp: 1792640227 +I: Current time: Fri Sep 19 11:15:17 +14 2025 +I: pbuilder-time-stamp: 1758230117 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 18 21:15 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='885023a38410498b9f80ee1df58c7adf' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3166622' - PS1='# ' - PS2='> ' + INVOCATION_ID=42416ff83b5a446f9324a460131e848b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=631270 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_kaqW --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1 --logfile b1/build.log libbio-coordinate-perl_1.7.1-4.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/pbuilderrc_O8qW --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2 --logfile b2/build.log libbio-coordinate-perl_1.7.1-4.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3166622/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -152,7 +184,7 @@ Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.26 [939 kB] -Fetched 14.7 MB in 1s (14.0 MB/s) +Fetched 14.7 MB in 0s (55.1 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -347,7 +379,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-coordinate-perl-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-coordinate-perl_1.7.1-4_source.changes dpkg-buildpackage: info: source package libbio-coordinate-perl dpkg-buildpackage: info: source version 1.7.1-4 dpkg-buildpackage: info: source distribution unstable @@ -369,25 +405,25 @@ Writing Makefile for Bio::Coordinate Writing MYMETA.yml and MYMETA.json dh_auto_build - make -j16 + make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' -cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm -cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm -cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm -cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm +cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm cp lib/Bio/Coordinate/Graph.pm blib/lib/Bio/Coordinate/Graph.pm -cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm +cp lib/Bio/Coordinate/ResultI.pm blib/lib/Bio/Coordinate/ResultI.pm cp lib/Bio/Coordinate/Result.pm blib/lib/Bio/Coordinate/Result.pm -cp lib/Bio/Coordinate/Collection.pm blib/lib/Bio/Coordinate/Collection.pm -cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm +cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm cp lib/Bio/Coordinate/Utils.pm blib/lib/Bio/Coordinate/Utils.pm +cp lib/Bio/Coordinate/GeneMapper.pm blib/lib/Bio/Coordinate/GeneMapper.pm +cp lib/Bio/Coordinate/Result/Gap.pm blib/lib/Bio/Coordinate/Result/Gap.pm cp lib/Bio/Coordinate/Pair.pm blib/lib/Bio/Coordinate/Pair.pm +cp lib/Bio/Coordinate/ExtrapolatingPair.pm blib/lib/Bio/Coordinate/ExtrapolatingPair.pm +cp lib/Bio/Coordinate/Chain.pm blib/lib/Bio/Coordinate/Chain.pm cp lib/Bio/Coordinate.pm blib/lib/Bio/Coordinate.pm -cp lib/Bio/Coordinate/Result/Match.pm blib/lib/Bio/Coordinate/Result/Match.pm +cp lib/Bio/Coordinate/MapperI.pm blib/lib/Bio/Coordinate/MapperI.pm Manifying 13 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_auto_test - make -j16 test TEST_VERBOSE=1 + make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t .............. @@ -894,41 +930,41 @@ ok t/release-eol.t ............. skipped: these tests are for release candidate testing All tests successful. -Files=8, Tests=485, 1 wallclock secs ( 0.07 usr 0.03 sys + 1.22 cusr 0.28 csys = 1.60 CPU) +Files=8, Tests=485, 1 wallclock secs ( 0.04 usr 0.03 sys + 0.74 cusr 0.24 csys = 1.05 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-coordinate-perl/ - make -j16 install DESTDIR=/build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr + make -j12 install DESTDIR=/build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' Manifying 13 pod documents Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result.pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/MapperI.pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Chain.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Collection.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Pair.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Graph.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ExtrapolatingPair.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/ResultI.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/GeneMapper.pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Utils.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Match.pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/perl5/Bio/Coordinate/Result/Gap.pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Graph.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::GeneMapper.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ExtrapolatingPair.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Gap.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::MapperI.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Pair.3pm +Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Chain.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Collection.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::ResultI.3pm Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Result::Match.3pm -Installing /build/reproducible-path/libbio-coordinate-perl-1.7.1/debian/libbio-coordinate-perl/usr/share/man/man3/Bio::Coordinate::Utils.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-coordinate-perl-1.7.1' dh_installdocs dh_installchangelogs @@ -951,12 +987,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/631270/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3166622 and its subdirectories -I: Current time: Wed Oct 21 15:38:15 -12 2026 -I: pbuilder-time-stamp: 1792640295 +I: removing directory /srv/workspace/pbuilder/631270 and its subdirectories +I: Current time: Fri Sep 19 11:16:09 +14 2025 +I: pbuilder-time-stamp: 1758230169 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libbio-coordinate-perl_1.7.1-4.diff: 77.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/libbio-coordinate-perl_1.7.1-4.diff.gz b2/build.log: 79.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.7% -- replaced with stdout Thu Sep 18 21:16:10 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbio-coordinate-perl_unstable_amd64_1758230170 + touch /var/log/reproducible-builds/diffoscope_stamp_libbio-coordinate-perl_unstable_amd64_1758230170 + RESULT=0 + systemd-run '--description=diffoscope on libbio-coordinate-perl/1.7.1-4 in unstable/amd64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-amd64_38-79355 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL --run-session -c jenkins-reproducible-unstable-diffoscope-be222e63-15c6-4f13-860f-8d4cbdea93df -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/dbd-tmp-6oLCDlK ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1/libbio-coordinate-perl_1.7.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2/libbio-coordinate-perl_1.7.1-4_amd64.changes' + false + set +x Running as unit: rb-diffoscope-amd64_38-79355.service; invocation ID: 4531cd0c3ca24724a6e270dbdf104549 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/libbio-coordinate-perl_1.7.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b1/libbio-coordinate-perl_1.7.1-4_amd64.changes /srv/reproducible-results/rbuild-debian/r-b-build.kDKA2TfL/b2/libbio-coordinate-perl_1.7.1-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 214ms CPU time consumed: 171ms Memory peak: 18M (swap: 0B) _ _ _ _ _ _ _ _ | (_) |__ | |__ (_) ___ ___ ___ ___ _ __ __| (_)_ __ __ _| |_ ___ | | | '_ \| '_ \| |/ _ \ _____ / __/ _ \ / _ \| '__/ _` | | '_ \ / _` | __/ _ \ | | | |_) | |_) | | (_) |_____| (_| (_) | (_) | | | (_| | | | | | (_| | || __/ |_|_|_.__/|_.__/|_|\___/ \___\___/ \___/|_| \__,_|_|_| |_|\__,_|\__\___| _ _ __ ___ _ __| | _____| '_ \ / _ \ '__| | |_____| |_) | __/ | | | | .__/ \___|_| |_| |_| Thu Sep 18 21:16:11 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 18 21:16:11 UTC 2025 I: libbio-coordinate-perl from unstable built successfully and reproducibly on amd64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-09-18 21:16:11] INFO: Starting at 2025-09-18 21:16:11.663792 [2025-09-18 21:16:11] INFO: Generating the pages of 1 package(s) [2025-09-18 21:16:11] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/amd64/libbio-coordinate-perl didn't produce a buildlog, even though it has been built. [2025-09-18 21:16:11] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/libbio-coordinate-perl didn't produce a buildlog, even though it has been built. [2025-09-18 21:16:11] INFO: Finished at 2025-09-18 21:16:11.926229, took: 0:00:00.262440 Thu Sep 18 21:16:11 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbio-coordinate-perl.html Thu Sep 18 21:16:11 UTC 2025 I: Removing signed libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc files: removed './b1/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc' removed './b2/libbio-coordinate-perl_1.7.1-4_amd64.buildinfo.asc' 1758230171 amd64 unstable libbio-coordinate-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-coordinate-perl_1.7.1-4.rbuild.log: 76.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/amd64/libbio-coordinate-perl_1.7.1-4.rbuild.log.gz [2025-09-18 21:16:12] INFO: Starting at 2025-09-18 21:16:12.239766 [2025-09-18 21:16:12] INFO: Generating the pages of 1 package(s) [2025-09-18 21:16:12] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/libbio-coordinate-perl didn't produce a buildlog, even though it has been built. [2025-09-18 21:16:12] INFO: Finished at 2025-09-18 21:16:12.494936, took: 0:00:00.255172 All cleanup done. Thu Sep 18 21:16:12 UTC 2025 - total duration: 0h 2m 29s. Thu Sep 18 21:16:12 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-mIg8tJTp, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 2min 30.289s CPU time consumed: 3.035s Memory peak: 40M (swap: 0B)